BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033947
MSLLQFSSTTVRSPTSVPCSGNHQITASAFSAGVSSSRTGSYSSSLVAKKANKKSNKQLN
GGVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW

High Scoring Gene Products

Symbol, full name Information P value
TRXF2
thioredoxin F2
protein from Arabidopsis thaliana 1.4e-14
TRXF1
thioredoxin F-type 1
protein from Arabidopsis thaliana 1.3e-13
P09856
Thioredoxin F-type, chloroplastic
protein from Spinacia oleracea 1.6e-13

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033947
        (108 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2171322 - symbol:TRXF2 "thioredoxin F2" specie...   186  1.4e-14   1
TAIR|locus:2075522 - symbol:TRXF1 "thioredoxin F-type 1" ...   177  1.3e-13   1
UNIPROTKB|P09856 - symbol:P09856 "Thioredoxin F-type, chl...   176  1.6e-13   1


>TAIR|locus:2171322 [details] [associations]
            symbol:TRXF2 "thioredoxin F2" species:3702 "Arabidopsis
            thaliana" [GO:0006662 "glycerol ether metabolic process"
            evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0015035 "protein
            disulfide oxidoreductase activity" evidence=IEA] [GO:0045454 "cell
            redox homeostasis" evidence=IEA] [GO:0008047 "enzyme activator
            activity" evidence=IDA] [GO:0043085 "positive regulation of
            catalytic activity" evidence=RCA;IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            InterPro:IPR005746 InterPro:IPR013766 InterPro:IPR017937
            Pfam:PF00085 PRINTS:PR00421 PROSITE:PS00194 GO:GO:0005829
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0009055
            EMBL:AB005242 Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833
            GO:GO:0022900 GO:GO:0045454 PROSITE:PS51352 GO:GO:0015035
            GO:GO:0008047 GO:GO:0006662 PANTHER:PTHR10438 eggNOG:COG0526
            HOGENOM:HOG000238599 ProtClustDB:CLSN2685211 EMBL:AF144386
            EMBL:AF370356 EMBL:AY059086 IPI:IPI00523387 RefSeq:NP_197144.1
            UniGene:At.6451 ProteinModelPortal:Q9XFH9 SMR:Q9XFH9 STRING:Q9XFH9
            PaxDb:Q9XFH9 PRIDE:Q9XFH9 EnsemblPlants:AT5G16400.1 GeneID:831501
            KEGG:ath:AT5G16400 GeneFarm:2538 TAIR:At5g16400 InParanoid:Q9XFH9
            OMA:PIVNSAG PhylomeDB:Q9XFH9 Genevestigator:Q9XFH9
            GermOnline:AT5G16400 Uniprot:Q9XFH9
        Length = 185

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 36/47 (76%), Positives = 38/47 (80%)

Query:    62 GVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
             G   VR SLE    TVG+VTEV+KDTFWPIVKAAGDK VVLDMYTQW
Sbjct:    62 GSCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQW 108


>TAIR|locus:2075522 [details] [associations]
            symbol:TRXF1 "thioredoxin F-type 1" species:3702
            "Arabidopsis thaliana" [GO:0006662 "glycerol ether metabolic
            process" evidence=IEA] [GO:0009055 "electron carrier activity"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0015035 "protein disulfide oxidoreductase activity"
            evidence=IEA] [GO:0045454 "cell redox homeostasis" evidence=IEA]
            [GO:0008047 "enzyme activator activity" evidence=IDA] [GO:0043085
            "positive regulation of catalytic activity" evidence=RCA;IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0004857 "enzyme
            inhibitor activity" evidence=IDA] [GO:0006109 "regulation of
            carbohydrate metabolic process" evidence=IDA] [GO:0043086 "negative
            regulation of catalytic activity" evidence=IDA] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0006098 "pentose-phosphate
            shunt" evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0019760
            "glucosinolate metabolic process" evidence=RCA] InterPro:IPR005746
            InterPro:IPR013766 InterPro:IPR017937 Pfam:PF00085 PRINTS:PR00421
            PROSITE:PS00194 GO:GO:0009570 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006109 GO:GO:0009055 GO:GO:0004857
            Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833 GO:GO:0022900
            GO:GO:0045454 PROSITE:PS51352 GO:GO:0015035 GO:GO:0008047
            GO:GO:0009534 KO:K03671 EMBL:AC018363 GO:GO:0006662
            PANTHER:PTHR10438 eggNOG:COG0526 EMBL:AF144385 EMBL:AY065391
            EMBL:AY096721 EMBL:AY084778 IPI:IPI00518514 RefSeq:NP_186922.1
            UniGene:At.20211 UniGene:At.46169 ProteinModelPortal:Q9XFH8
            SMR:Q9XFH8 STRING:Q9XFH8 PaxDb:Q9XFH8 PRIDE:Q9XFH8 ProMEX:Q9XFH8
            EnsemblPlants:AT3G02730.1 GeneID:821260 KEGG:ath:AT3G02730
            GeneFarm:2480 TAIR:At3g02730 HOGENOM:HOG000238599 InParanoid:Q9XFH8
            OMA:CRIPYSG PhylomeDB:Q9XFH8 ProtClustDB:CLSN2685211
            Genevestigator:Q9XFH8 GermOnline:AT3G02730 Uniprot:Q9XFH8
        Length = 178

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 34/48 (70%), Positives = 38/48 (79%)

Query:    61 GGVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
             G    VR SLE    +VG+VTEV+KDTFWPIVKAAG+K VVLDMYTQW
Sbjct:    51 GDSSVVRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQW 98


>UNIPROTKB|P09856 [details] [associations]
            symbol:P09856 "Thioredoxin F-type, chloroplastic"
            species:3562 "Spinacia oleracea" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR005746 InterPro:IPR013766
            InterPro:IPR017937 Pfam:PF00085 PRINTS:PR00421 PROSITE:PS00194
            GO:GO:0009507 GO:GO:0009055 Gene3D:3.40.30.10 InterPro:IPR012336
            SUPFAM:SSF52833 GO:GO:0022900 GO:GO:0045454 PROSITE:PS51352
            GO:GO:0015035 GO:GO:0006662 PANTHER:PTHR10438 PDB:2PVO PDBsum:2PVO
            EMBL:X14959 PIR:S04661 PDB:1F9M PDB:1FAA PDB:2PU9 PDBsum:1F9M
            PDBsum:1FAA PDBsum:2PU9 ProteinModelPortal:P09856 SMR:P09856
            IntAct:P09856 EvolutionaryTrace:P09856 Uniprot:P09856
        Length = 190

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 39/62 (62%), Positives = 47/62 (75%)

Query:    53 KKSNKQLNGGVFTVRSSLEIA-G-----ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYT 106
             +K  +++ GG   VR+S+E A G     A VG+VTEVNKDTFWPIVKAAGDK VVLDM+T
Sbjct:    54 RKDRRRMRGG--EVRASMEQALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFT 111

Query:   107 QW 108
             QW
Sbjct:   112 QW 113


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.128   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      108        79   0.00091  102 3  11 22  0.41    29
                                                     29  0.39    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  503 (54 KB)
  Total size of DFA:  86 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.98u 0.16s 7.14t   Elapsed:  00:00:00
  Total cpu time:  6.98u 0.16s 7.14t   Elapsed:  00:00:00
  Start:  Fri May 10 09:15:14 2013   End:  Fri May 10 09:15:14 2013

Back to top