BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033947
         (108 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|449442647|ref|XP_004139092.1| PREDICTED: thioredoxin F2, chloroplastic-like [Cucumis sativus]
 gi|449476195|ref|XP_004154668.1| PREDICTED: thioredoxin F2, chloroplastic-like [Cucumis sativus]
          Length = 180

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 61/90 (67%), Gaps = 6/90 (6%)

Query: 19  CSGNHQITASAFSAGVSSSRTGSYSSSLVAKKANKKSNKQLNGGVFTVRSSLEIAGATVG 78
           CSG   I      A +S S++G +SS  ++  +++        G F V SSLE AGATVG
Sbjct: 20  CSGRQPI------ATLSESKSGCFSSRSLSLSSSRSIGVSGRNGSFKVNSSLETAGATVG 73

Query: 79  EVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           +VTEVNKDTFWPIV AAGDKTVVLDMYTQW
Sbjct: 74  QVTEVNKDTFWPIVNAAGDKTVVLDMYTQW 103


>gi|255547546|ref|XP_002514830.1| thioredoxin f-type, putative [Ricinus communis]
 gi|223545881|gb|EEF47384.1| thioredoxin f-type, putative [Ricinus communis]
          Length = 186

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 74/119 (62%), Gaps = 21/119 (17%)

Query: 1   MSLLQFS---STTVRSPTSVPCSGNHQITASAFSAGVSSSRTGSYSSSLVAKKANKKSN- 56
           M+++QFS   ST++RS  S+     H+I  S        S+  S+   L    +N K++ 
Sbjct: 1   MAMIQFSISPSTSIRSSPSISGPSAHRIVPSI-------SKEHSFKHFL---NSNSKTSC 50

Query: 57  -----KQLNGGVFTVRSSLEIAG--ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
                K  N   FTV+SSL+  G  ATVG+VTEV+KDTFWPIVK+AGDKTVVLDMYTQW
Sbjct: 51  FPVTSKNGNCLAFTVKSSLDTVGPRATVGQVTEVSKDTFWPIVKSAGDKTVVLDMYTQW 109


>gi|217071258|gb|ACJ83989.1| unknown [Medicago truncatula]
 gi|388514077|gb|AFK45100.1| unknown [Medicago truncatula]
          Length = 186

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 42/49 (85%), Gaps = 2/49 (4%)

Query: 62  GVFTVRSSLEIAG--ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           G F+VRSSLE  G   TVG+VTEVNKDTFWPIV AAGDKTVVLDMYTQW
Sbjct: 61  GSFSVRSSLETTGPTVTVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQW 109


>gi|357507807|ref|XP_003624192.1| Thioredoxin [Medicago truncatula]
 gi|355499207|gb|AES80410.1| Thioredoxin [Medicago truncatula]
          Length = 182

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 42/49 (85%), Gaps = 2/49 (4%)

Query: 62  GVFTVRSSLEIAG--ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           G F+VRSSLE  G   TVG+VTEVNKDTFWPIV AAGDKTVVLDMYTQW
Sbjct: 57  GSFSVRSSLETTGPTVTVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQW 105


>gi|15237341|ref|NP_197144.1| thioredoxin F2 [Arabidopsis thaliana]
 gi|11135405|sp|Q9XFH9.1|TRXF2_ARATH RecName: Full=Thioredoxin F2, chloroplastic; Short=AtTrxf2;
           AltName: Full=Thioredoxin F1; Short=AtTrxf1; Flags:
           Precursor
 gi|4973254|gb|AAD35004.1|AF144386_1 thioredoxin f2 [Arabidopsis thaliana]
 gi|13878187|gb|AAK44171.1|AF370356_1 putative thioredoxin f2 protein [Arabidopsis thaliana]
 gi|9759122|dbj|BAB09607.1| thioredoxin f2 [Arabidopsis thaliana]
 gi|16323396|gb|AAL15192.1| putative thioredoxin f2 protein [Arabidopsis thaliana]
 gi|332004905|gb|AED92288.1| thioredoxin F2 [Arabidopsis thaliana]
          Length = 185

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/47 (76%), Positives = 38/47 (80%)

Query: 62  GVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           G   VR SLE    TVG+VTEV+KDTFWPIVKAAGDK VVLDMYTQW
Sbjct: 62  GSCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQW 108


>gi|224146173|ref|XP_002325907.1| thioredoxin f [Populus trichocarpa]
 gi|118488397|gb|ABK96015.1| unknown [Populus trichocarpa]
 gi|222862782|gb|EEF00289.1| thioredoxin f [Populus trichocarpa]
          Length = 188

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 69/115 (60%), Gaps = 12/115 (10%)

Query: 1   MSLLQFS---STTVRSPTSVPCSGNHQITASAFSAGVSSSRTGSYSS--SLVAKKANKKS 55
           M+ +QFS   ++++RS  S   S  + IT        SS+ T   SS   L +++ N   
Sbjct: 1   MASIQFSLSPTSSIRSSPSFAGSPANPITPQ-----YSSTPTKDLSSYCKLSSRQKNVIK 55

Query: 56  NKQLNGGVFTVRSSLEIAGAT--VGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
                  V TVRSSL+ AG T  VG+VTEV KDTFWPIV +AGDKTVVLDMYTQW
Sbjct: 56  RNGSRNLVSTVRSSLDTAGPTSAVGQVTEVTKDTFWPIVNSAGDKTVVLDMYTQW 110


>gi|388520393|gb|AFK48258.1| unknown [Lotus japonicus]
          Length = 179

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 41/49 (83%), Gaps = 2/49 (4%)

Query: 62  GVFTVRSSLEIAG--ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           G   VRSSLE AG   TVG+VTEVNKDTFWPIV AAGDKTVVLDM+TQW
Sbjct: 54  GSVAVRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTQW 102


>gi|388498704|gb|AFK37418.1| unknown [Lotus japonicus]
          Length = 179

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 41/49 (83%), Gaps = 2/49 (4%)

Query: 62  GVFTVRSSLEIAG--ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           G   VRSSLE AG   TVG+VTEVNKDTFWPIV AAGDKTVVLDM+TQW
Sbjct: 54  GSVAVRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTQW 102


>gi|297811781|ref|XP_002873774.1| ATF2/TRXF2 [Arabidopsis lyrata subsp. lyrata]
 gi|297319611|gb|EFH50033.1| ATF2/TRXF2 [Arabidopsis lyrata subsp. lyrata]
          Length = 186

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 38/47 (80%)

Query: 62  GVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           G + VR SLE    +VG+V EV+KDTFWPIVKAAGDK VVLDMYTQW
Sbjct: 63  GSYVVRCSLETVNVSVGQVMEVDKDTFWPIVKAAGDKIVVLDMYTQW 109


>gi|225430920|ref|XP_002277021.1| PREDICTED: thioredoxin F, chloroplastic [Vitis vinifera]
 gi|297735248|emb|CBI17610.3| unnamed protein product [Vitis vinifera]
          Length = 172

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 37/41 (90%)

Query: 68  SSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           SS++ A A VG+VTEVNKDTFWPIVKAAGDK VVLDMYTQW
Sbjct: 55  SSIDTAEAVVGQVTEVNKDTFWPIVKAAGDKAVVLDMYTQW 95


>gi|135748|sp|P09856.2|TRXF_SPIOL RecName: Full=Thioredoxin F-type, chloroplastic; Short=Trx-F;
           Flags: Precursor
 gi|21344|emb|CAA33082.1| unnamed protein product [Spinacia oleracea]
          Length = 190

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 46/63 (73%), Gaps = 8/63 (12%)

Query: 52  NKKSNKQLNGGVFTVRSSLEIA------GATVGEVTEVNKDTFWPIVKAAGDKTVVLDMY 105
            +K  +++ GG   VR+S+E A       A VG+VTEVNKDTFWPIVKAAGDK VVLDM+
Sbjct: 53  KRKDRRRMRGG--EVRASMEQALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMF 110

Query: 106 TQW 108
           TQW
Sbjct: 111 TQW 113


>gi|158427468|gb|ABW38329.1| chloroplast thioredoxin f [Fragaria x ananassa]
          Length = 186

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 47/65 (72%), Gaps = 9/65 (13%)

Query: 52  NKKSN---KQLNGGV-----FTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLD 103
           N K N    QL G V     F V SSL+ A ATVG+VTEV+KDTFWPIV AAGDKT+VLD
Sbjct: 46  NNKRNAAQHQLVGFVRRKKPFAVSSSLDTA-ATVGQVTEVDKDTFWPIVNAAGDKTIVLD 104

Query: 104 MYTQW 108
           MYTQW
Sbjct: 105 MYTQW 109


>gi|351727176|ref|NP_001235872.1| uncharacterized protein LOC100499776 [Glycine max]
 gi|255626459|gb|ACU13574.1| unknown [Glycine max]
          Length = 181

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 37/41 (90%), Gaps = 2/41 (4%)

Query: 70  LEIAG--ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           LE AG   TVG+VTEVNKDTFWPIVKAAGDKTVVLDMYTQW
Sbjct: 64  LETAGPTVTVGQVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 104


>gi|351728060|ref|NP_001236670.1| uncharacterized protein LOC100306555 [Glycine max]
 gi|255628867|gb|ACU14778.1| unknown [Glycine max]
          Length = 179

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 37/41 (90%), Gaps = 2/41 (4%)

Query: 70  LEIAG--ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           LE AG   TVG+VTEVNKDTFWPIVKAAGDKTVVLDMYTQW
Sbjct: 62  LETAGPTVTVGQVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 102


>gi|15232959|ref|NP_186922.1| thioredoxin F1 [Arabidopsis thaliana]
 gi|27735269|sp|Q9XFH8.2|TRXF1_ARATH RecName: Full=Thioredoxin F1, chloroplastic; Short=AtTrxf1;
           AltName: Full=Thioredoxin F2; Short=AtTrxf2; Flags:
           Precursor
 gi|6728989|gb|AAF26987.1|AC018363_32 thioredoxin f1 [Arabidopsis thaliana]
 gi|17529210|gb|AAL38832.1| putative thioredoxin f1 protein [Arabidopsis thaliana]
 gi|20466041|gb|AAM20355.1| putative thioredoxin f1 protein [Arabidopsis thaliana]
 gi|21537004|gb|AAM61345.1| thioredoxin f1 [Arabidopsis thaliana]
 gi|332640331|gb|AEE73852.1| thioredoxin F1 [Arabidopsis thaliana]
          Length = 178

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 37/43 (86%)

Query: 66  VRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           VR SLE    +VG+VTEV+KDTFWPIVKAAG+K VVLDMYTQW
Sbjct: 56  VRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQW 98


>gi|4973252|gb|AAD35003.1|AF144385_1 thioredoxin f1 [Arabidopsis thaliana]
          Length = 178

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 37/43 (86%)

Query: 66  VRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           VR SLE    +VG+VTEV+KDTFWPIVKAAG+K VVLDMYTQW
Sbjct: 56  VRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQW 98


>gi|297832906|ref|XP_002884335.1| thioredoxin F-type 1 [Arabidopsis lyrata subsp. lyrata]
 gi|297330175|gb|EFH60594.1| thioredoxin F-type 1 [Arabidopsis lyrata subsp. lyrata]
          Length = 178

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 37/43 (86%)

Query: 66  VRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           VR SLE    +VG+VTEV+KDTFWPIVKAAG+K VVLDMYTQW
Sbjct: 56  VRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKIVVLDMYTQW 98


>gi|11135108|sp|O48897.1|TRXF_BRANA RecName: Full=Thioredoxin F-type, chloroplastic; Short=Trx-F;
           Flags: Precursor
 gi|2921094|gb|AAC04671.1| thioredoxin-f [Brassica napus]
          Length = 182

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 50/87 (57%), Gaps = 6/87 (6%)

Query: 26  TASAFSAGVSSSRTGSYSSSLVAKKANKKSNKQLN----GGVFTVRSSLEIAGATVGEVT 81
           T   FS      R  SYS   VA    +     L+    G    VR SL+    +VG+VT
Sbjct: 17  TTGGFSPAKKQCRIPSYSG--VATTTRRIGLCSLDYVKRGDSSVVRCSLQTVNVSVGQVT 74

Query: 82  EVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           EV+KDTFWPIVKAAG+K VVLDMYTQW
Sbjct: 75  EVDKDTFWPIVKAAGEKIVVLDMYTQW 101


>gi|116785620|gb|ABK23796.1| unknown [Picea sitchensis]
          Length = 194

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 37/45 (82%)

Query: 64  FTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           F VR+S++    T+G+VTEV+KD+FWP V AAGDK VVLDMYTQW
Sbjct: 72  FLVRASVKTVEVTIGQVTEVDKDSFWPAVDAAGDKVVVLDMYTQW 116


>gi|116782582|gb|ABK22559.1| unknown [Picea sitchensis]
 gi|224284794|gb|ACN40127.1| unknown [Picea sitchensis]
          Length = 194

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 37/45 (82%)

Query: 64  FTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           F VR+S++    T+G+VTEV+KD+FWP V AAGDK VVLDMYTQW
Sbjct: 72  FLVRASVKTVEVTIGQVTEVDKDSFWPAVDAAGDKVVVLDMYTQW 116


>gi|413917683|gb|AFW57615.1| putative thioredoxin superfamily protein [Zea mays]
          Length = 138

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 7/99 (7%)

Query: 17  VPCSGNHQITASAFSAGVSSSRTGSYSSSLVAKKANKKSNKQLNGGVFTVRSS-LEI--- 72
           +P S +H + ++      ++ R    +++   K++   +      GV  VRSS +E    
Sbjct: 5   LPISSSHGLASTPAPISTTTCRPAVLATAAAQKRSLLLATASETRGVAPVRSSGIETSTV 64

Query: 73  ---AGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
                A  G+VTEVNKDTFWPIV+AAGDK VVLDMYT+W
Sbjct: 65  GLGCEAVTGQVTEVNKDTFWPIVEAAGDKVVVLDMYTEW 103


>gi|195640294|gb|ACG39615.1| thioredoxin F-type [Zea mays]
          Length = 200

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 41/55 (74%), Gaps = 7/55 (12%)

Query: 61  GGVFTVRSS-LEI------AGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           GGV  VRSS +E       A A  G+VTEVNKDTFWPIV+AAGDK VVLDMYT+W
Sbjct: 67  GGVAPVRSSGIETTSTSVGAEAVTGQVTEVNKDTFWPIVEAAGDKVVVLDMYTEW 121


>gi|413917682|gb|AFW57614.1| putative thioredoxin superfamily protein [Zea mays]
          Length = 180

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 7/99 (7%)

Query: 17  VPCSGNHQITASAFSAGVSSSRTGSYSSSLVAKKANKKSNKQLNGGVFTVRSS-LEI--- 72
           +P S +H + ++      ++ R    +++   K++   +      GV  VRSS +E    
Sbjct: 5   LPISSSHGLASTPAPISTTTCRPAVLATAAAQKRSLLLATASETRGVAPVRSSGIETSTV 64

Query: 73  ---AGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
                A  G+VTEVNKDTFWPIV+AAGDK VVLDMYT+W
Sbjct: 65  GLGCEAVTGQVTEVNKDTFWPIVEAAGDKVVVLDMYTEW 103


>gi|226530809|ref|NP_001150158.1| LOC100283787 [Zea mays]
 gi|195637214|gb|ACG38075.1| thioredoxin F-type [Zea mays]
          Length = 180

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 7/99 (7%)

Query: 17  VPCSGNHQITASAFSAGVSSSRTGSYSSSLVAKKANKKSNKQLNGGVFTVRSS-LEI--- 72
           +P S +H + ++      ++ R    +++   K++   +      GV  VRSS +E    
Sbjct: 5   LPISSSHGLASTPAPISTTTCRPAVLATAAAQKRSLLLATASETRGVAPVRSSGIETSTV 64

Query: 73  ---AGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
                A  G+VTEVNKDTFWPIV+AAGDK VVLDMYT+W
Sbjct: 65  GLGCEAVTGQVTEVNKDTFWPIVEAAGDKVVVLDMYTEW 103


>gi|42565411|gb|AAS20979.1| thioredoxin, partial [Hyacinthus orientalis]
          Length = 195

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 61  GGVFTVRSSLEI-AGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           G V  V  SL+  AG TVG+VT+VN+DTFWP+VKAAG K VVLDMYTQW
Sbjct: 76  GQVTDVEDSLDTTAGPTVGQVTDVNQDTFWPLVKAAGTKIVVLDMYTQW 124


>gi|267120|sp|P29450.1|TRXF_PEA RecName: Full=Thioredoxin F-type, chloroplastic; Short=Trx-F;
           Flags: Precursor
 gi|20907|emb|CAA45098.1| thioredoxin F [Pisum sativum]
 gi|1388086|gb|AAC49357.1| thioredoxin f [Pisum sativum]
          Length = 182

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/41 (80%), Positives = 36/41 (87%), Gaps = 2/41 (4%)

Query: 70  LEIAG--ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           LE AG   TVG+VTEVNKDTFWPIV AAGDKTVVLDM+T+W
Sbjct: 65  LETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTKW 105


>gi|10835722|pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
           Chloroplast (Long Form)
          Length = 124

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 75  ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           A VG+VTEVNKDTFWPIVKAAGDK VVLDM+TQW
Sbjct: 15  AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQW 48


>gi|10835710|pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
           Chloroplast (Short Form)
 gi|10835711|pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
           Chloroplast (Short Form)
          Length = 112

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 75  ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           A VG+VTEVNKDTFWPIVKAAGDK VVLDM+TQW
Sbjct: 3   AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQW 36


>gi|226531728|ref|NP_001140943.1| uncharacterized protein LOC100273021 [Zea mays]
 gi|194701858|gb|ACF85013.1| unknown [Zea mays]
 gi|413949995|gb|AFW82644.1| putative thioredoxin superfamily protein [Zea mays]
          Length = 129

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 41/57 (71%), Gaps = 8/57 (14%)

Query: 60  NGGVFT-VRSS-LEI------AGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
            GGV   VRSS +E       A A  G+VTEVNKDTFWPIV+AAGDK VVLDMYT+W
Sbjct: 66  GGGVLAPVRSSGIETTTTSVGAEAVTGQVTEVNKDTFWPIVEAAGDKVVVLDMYTEW 122


>gi|152149372|pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
           Ferredoxin: Thioredoxin Reductase And Thioredoxin F
 gi|152149394|pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
           Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
           Reductase
          Length = 111

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 75  ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           A VG+VTEVNKDTFWPIVKAAGDK VVLDM+TQW
Sbjct: 2   AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQW 35


>gi|194690578|gb|ACF79373.1| unknown [Zea mays]
 gi|413949996|gb|AFW82645.1| putative thioredoxin superfamily protein [Zea mays]
          Length = 201

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 32/36 (88%)

Query: 73  AGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           A A  G+VTEVNKDTFWPIV+AAGDK VVLDMYT+W
Sbjct: 87  AEAVTGQVTEVNKDTFWPIVEAAGDKVVVLDMYTEW 122


>gi|312231980|gb|ADQ53451.1| plastid thioredoxin F precursor [Nicotiana tabacum]
          Length = 175

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 32/33 (96%)

Query: 76  TVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           TVG+VTEV KDTFWPIV+AAGDKTVV+DMYTQW
Sbjct: 66  TVGQVTEVCKDTFWPIVEAAGDKTVVVDMYTQW 98


>gi|11135152|sp|O81332.1|TRXF_MESCR RecName: Full=Thioredoxin F-type, chloroplastic; Short=Trx-F;
           Flags: Precursor
 gi|3202022|gb|AAC19392.1| thioredoxin F precursor [Mesembryanthemum crystallinum]
          Length = 191

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 7/74 (9%)

Query: 40  GSYSSSLVAKKANKKSNKQLNGGVFTVRSSLEIA-GAT----VGEVTEVNKDTFWPIVKA 94
           G+ +  L+ +K  ++   +++G    V++SLE A GA     VG+VTEV+KDTFWPI   
Sbjct: 43  GATAGKLMREKVGERM--RMSGRSCCVKASLETAVGAESETLVGKVTEVDKDTFWPIANG 100

Query: 95  AGDKTVVLDMYTQW 108
           AGDK VVLDMYTQW
Sbjct: 101 AGDKPVVLDMYTQW 114


>gi|115441775|ref|NP_001045167.1| Os01g0913000 [Oryza sativa Japonica Group]
 gi|75330816|sp|Q8S091.1|TRXF_ORYSJ RecName: Full=Thioredoxin F, chloroplastic; Short=OsTrxf; AltName:
           Full=OsTrx03; Flags: Precursor
 gi|20161376|dbj|BAB90300.1| putative thioredoxin F [Oryza sativa Japonica Group]
 gi|113534698|dbj|BAF07081.1| Os01g0913000 [Oryza sativa Japonica Group]
 gi|125528816|gb|EAY76930.1| hypothetical protein OsI_04888 [Oryza sativa Indica Group]
 gi|125573075|gb|EAZ14590.1| hypothetical protein OsJ_04513 [Oryza sativa Japonica Group]
 gi|215715230|dbj|BAG94981.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 187

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 31/36 (86%)

Query: 73  AGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           A A  G+VTEVNKDTFWPIVK+AG K VVLDMYTQW
Sbjct: 75  AVAVTGQVTEVNKDTFWPIVKSAGPKVVVLDMYTQW 110


>gi|300681437|emb|CBH32529.1| thioredoxin F-type, chloroplast precursor,putative, expressed
           [Triticum aestivum]
          Length = 189

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 31/36 (86%)

Query: 73  AGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           A A  G+VTEV KDTFWPIVKAAG+K VVLDMYTQW
Sbjct: 77  AVAVTGQVTEVCKDTFWPIVKAAGEKPVVLDMYTQW 112


>gi|357126448|ref|XP_003564899.1| PREDICTED: thioredoxin F, chloroplastic-like [Brachypodium
           distachyon]
          Length = 192

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 52/102 (50%), Gaps = 21/102 (20%)

Query: 28  SAFSAGVSSSRTGSYSSSLVAKKANKK------SNKQLNGGVFTVRS-SLEIAG------ 74
           +A S  +SS R  +    L    A++K      S     GGV  V+S SLE A       
Sbjct: 14  AASSPAISSCRPAACGRFLACATASQKRSLMVMSGSDGRGGVTPVKSGSLETATGEEVET 73

Query: 75  --------ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
                   A  G+VTEV KDTFWPIVKAA  K VVLDMYTQW
Sbjct: 74  ATTGADAVAVTGQVTEVCKDTFWPIVKAAPPKLVVLDMYTQW 115


>gi|302813886|ref|XP_002988628.1| hypothetical protein SELMODRAFT_183993 [Selaginella moellendorffii]
 gi|300143735|gb|EFJ10424.1| hypothetical protein SELMODRAFT_183993 [Selaginella moellendorffii]
          Length = 174

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 26/29 (89%)

Query: 80  VTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           VTEV+KD+FWP+V  AGDK VVLDMYTQW
Sbjct: 69  VTEVDKDSFWPLVDGAGDKVVVLDMYTQW 97


>gi|302795109|ref|XP_002979318.1| hypothetical protein SELMODRAFT_110708 [Selaginella moellendorffii]
 gi|300153086|gb|EFJ19726.1| hypothetical protein SELMODRAFT_110708 [Selaginella moellendorffii]
          Length = 134

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 26/29 (89%)

Query: 80  VTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           VTEV+KD+FWP+V  AGDK VVLDMYTQW
Sbjct: 21  VTEVDKDSFWPLVDGAGDKVVVLDMYTQW 49


>gi|168056319|ref|XP_001780168.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668401|gb|EDQ55009.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 112

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%), Gaps = 3/40 (7%)

Query: 69  SLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           S+E+A   VG +TEV  DTF+P +K AG+K VVLDMYTQW
Sbjct: 1   SVEVA---VGGITEVGNDTFYPFLKDAGEKVVVLDMYTQW 37


>gi|302854651|ref|XP_002958831.1| thioredoxin-like protein [Volvox carteri f. nagariensis]
 gi|300255797|gb|EFJ40082.1| thioredoxin-like protein [Volvox carteri f. nagariensis]
          Length = 198

 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 73  AGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           +G+  G + E+NKDTFW  +K  GD  VV+D YT W
Sbjct: 81  SGSIDGGLLELNKDTFWEYLKLQGDTLVVVDFYTDW 116


>gi|384250001|gb|EIE23481.1| thioredoxin-like protein [Coccomyxa subellipsoidea C-169]
          Length = 168

 Score = 41.2 bits (95), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 10/54 (18%)

Query: 65  TVRSSLEIAGATVGE----------VTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           ++R+ +    ATV E          + E+NKD ++P +K   DK V++D YT W
Sbjct: 39  SLRAEVAAKAATVEEGSSEQATTLGLRELNKDDYYPFLKENADKLVIVDFYTDW 92


>gi|193875830|gb|ACF24551.1| chloroplast thioredoxin F-type [Gymnochlora stellata]
          Length = 197

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 72  IAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           +A + V  + EV KD++   +K AGDK V++D YT W
Sbjct: 84  VACSEVDLIREVGKDSYETTLKEAGDKLVLVDFYTDW 120


>gi|307105591|gb|EFN53839.1| hypothetical protein CHLNCDRAFT_36198 [Chlorella variabilis]
          Length = 190

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 21/29 (72%)

Query: 80  VTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           + EV K+ ++ +++ AG K VV+D YT+W
Sbjct: 86  LREVTKEDYYGVIRDAGSKLVVVDCYTEW 114


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.309    0.121    0.336 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,364,654,100
Number of Sequences: 23463169
Number of extensions: 43221460
Number of successful extensions: 175094
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 174921
Number of HSP's gapped (non-prelim): 165
length of query: 108
length of database: 8,064,228,071
effective HSP length: 76
effective length of query: 32
effective length of database: 6,281,027,227
effective search space: 200992871264
effective search space used: 200992871264
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 69 (31.2 bits)