BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033947
         (108 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
           Chloroplast (Long Form)
          Length = 124

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 75  ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           A VG+VTEVNKDTFWPIVKAAGDK VVLDM+TQW
Sbjct: 15  AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQW 48


>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
           Chloroplast (Short Form)
 pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
           Chloroplast (Short Form)
          Length = 112

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 75  ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           A VG+VTEVNKDTFWPIVKAAGDK VVLDM+TQW
Sbjct: 3   AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQW 36


>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
           Ferredoxin: Thioredoxin Reductase And Thioredoxin F
 pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
           Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
           Reductase
          Length = 111

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 75  ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
           A VG+VTEVNKDTFWPIVKAAGDK VVLDM+TQW
Sbjct: 2   AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQW 35


>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
           Arabidopsis Thaliana In Complex With
           (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
 pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
           Arabidopsis Thaliana In Complex With
           13-Aza-13,14-Dihydrocopalyl Diphosphate
 pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
           Arabidopsis Thaliana In Complex With
           13-Aza-13,14-Dihydrocopalyl Diphosphate
 pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
           Arabidopsis Thaliana In Complex With
           13-Aza-13,14-Dihydrocopalyl Diphosphate
          Length = 727

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 46  LVAKKANKKSNKQLNGGVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMY 105
           +++  +N  + K+    V T+  +L     T GE+T    DT W  +  AGDKT      
Sbjct: 1   MISVGSNSNAFKEAVKSVKTILRNL-----TDGEITISAYDTAWVALIDAGDKTPAFPSA 55

Query: 106 TQW 108
            +W
Sbjct: 56  VKW 58


>pdb|1V8C|A Chain A, Crystal Structure Of Moad Related Protein From Thermus
          Thermophilus Hb8
 pdb|1V8C|B Chain B, Crystal Structure Of Moad Related Protein From Thermus
          Thermophilus Hb8
 pdb|1V8C|C Chain C, Crystal Structure Of Moad Related Protein From Thermus
          Thermophilus Hb8
 pdb|1V8C|D Chain D, Crystal Structure Of Moad Related Protein From Thermus
          Thermophilus Hb8
          Length = 168

 Score = 25.8 bits (55), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 64 FTVRSSLEIAGATVGEVTE 82
           T +S LE+ GATVGEV E
Sbjct: 12 LTGKSQLELPGATVGEVLE 30


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.128    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,842,603
Number of Sequences: 62578
Number of extensions: 48506
Number of successful extensions: 170
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 26
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)