BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033947
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XFH9|TRXF2_ARATH Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400
PE=2 SV=1
Length = 185
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 38/47 (80%)
Query: 62 GVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
G VR SLE TVG+VTEV+KDTFWPIVKAAGDK VVLDMYTQW
Sbjct: 62 GSCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQW 108
>sp|P09856|TRXF_SPIOL Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2
Length = 190
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 46/63 (73%), Gaps = 8/63 (12%)
Query: 52 NKKSNKQLNGGVFTVRSSLEIA------GATVGEVTEVNKDTFWPIVKAAGDKTVVLDMY 105
+K +++ GG VR+S+E A A VG+VTEVNKDTFWPIVKAAGDK VVLDM+
Sbjct: 53 KRKDRRRMRGG--EVRASMEQALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMF 110
Query: 106 TQW 108
TQW
Sbjct: 111 TQW 113
>sp|Q9XFH8|TRXF1_ARATH Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730
PE=1 SV=2
Length = 178
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 66 VRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
VR SLE +VG+VTEV+KDTFWPIVKAAG+K VVLDMYTQW
Sbjct: 56 VRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQW 98
>sp|O48897|TRXF_BRANA Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2
SV=1
Length = 182
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 26 TASAFSAGVSSSRTGSYSSSLVAKKANKKSNKQLN----GGVFTVRSSLEIAGATVGEVT 81
T FS R SYS VA + L+ G VR SL+ +VG+VT
Sbjct: 17 TTGGFSPAKKQCRIPSYSG--VATTTRRIGLCSLDYVKRGDSSVVRCSLQTVNVSVGQVT 74
Query: 82 EVNKDTFWPIVKAAGDKTVVLDMYTQW 108
EV+KDTFWPIVKAAG+K VVLDMYTQW
Sbjct: 75 EVDKDTFWPIVKAAGEKIVVLDMYTQW 101
>sp|P29450|TRXF_PEA Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1
Length = 182
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/41 (80%), Positives = 36/41 (87%), Gaps = 2/41 (4%)
Query: 70 LEIAG--ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
LE AG TVG+VTEVNKDTFWPIV AAGDKTVVLDM+T+W
Sbjct: 65 LETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTKW 105
>sp|O81332|TRXF_MESCR Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum
PE=2 SV=1
Length = 191
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 7/74 (9%)
Query: 40 GSYSSSLVAKKANKKSNKQLNGGVFTVRSSLEIA-GAT----VGEVTEVNKDTFWPIVKA 94
G+ + L+ +K ++ +++G V++SLE A GA VG+VTEV+KDTFWPI
Sbjct: 43 GATAGKLMREKVGERM--RMSGRSCCVKASLETAVGAESETLVGKVTEVDKDTFWPIANG 100
Query: 95 AGDKTVVLDMYTQW 108
AGDK VVLDMYTQW
Sbjct: 101 AGDKPVVLDMYTQW 114
>sp|Q8S091|TRXF_ORYSJ Thioredoxin F, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os01g0913000 PE=2 SV=1
Length = 187
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/36 (80%), Positives = 31/36 (86%)
Query: 73 AGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
A A G+VTEVNKDTFWPIVK+AG K VVLDMYTQW
Sbjct: 75 AVAVTGQVTEVNKDTFWPIVKSAGPKVVVLDMYTQW 110
>sp|Q568Z0|T11L2_RAT T-complex protein 11-like protein 2 OS=Rattus norvegicus GN=Tcp11l2
PE=2 SV=1
Length = 517
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 38 RTGSYSSSLVAKKANKKSNKQLNGGVFTVRSSLEIAGATVGEVTEVNKDTFWP 90
R Y SL+ + +KS + GG+ ++ LE+ G + +NK + P
Sbjct: 439 RIQLYMKSLLCLPSTQKSRPPVPGGLDVIQQELEVLGCQYANIVNLNKQVYGP 491
>sp|A4FUW8|TXD11_BOVIN Thioredoxin domain-containing protein 11 OS=Bos taurus GN=TXNDC11
PE=2 SV=1
Length = 957
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 80 VTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
+TEV DTFW +V D V+L Y QW
Sbjct: 664 ITEVTTDTFWEVVLQKQD--VLLLYYAQW 690
>sp|Q8K2W3|TXD11_MOUSE Thioredoxin domain-containing protein 11 OS=Mus musculus GN=Txndc11
PE=2 SV=1
Length = 948
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 80 VTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108
+TEV DTFW + D V+L YTQW
Sbjct: 661 ITEVTTDTFWEVTLRKQD--VLLLYYTQW 687
>sp|B3PIS9|ATPA_CELJU ATP synthase subunit alpha OS=Cellvibrio japonicus (strain Ueda107)
GN=atpA PE=3 SV=1
Length = 514
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 14 PTSVPCSGNHQI--TASAFSAGVSSSRTGSYSSSLVAKKANKKSNKQLNGGVFT 65
PT+V + QI +S F+AGV S S S V A K K+L+GG+ T
Sbjct: 343 PTNVISITDGQIFLESSMFNAGVRPSMNAGISVSRVGGAAQTKVIKKLSGGIRT 396
>sp|Q8C102|GALT5_MOUSE Polypeptide N-acetylgalactosaminyltransferase 5 OS=Mus musculus
GN=Galnt5 PE=2 SV=2
Length = 930
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 34 VSSSRTGSYSSSLVAKKANKKSNKQLNGGVFTVRSSLEIAGATVG 78
+ +++ + SS KKA +S ++GG+ T RS+L TVG
Sbjct: 352 IPRNQSKTSSSPPALKKAVSQSKPTISGGLHTARSNLTAKAPTVG 396
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.121 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,885,044
Number of Sequences: 539616
Number of extensions: 995596
Number of successful extensions: 5046
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 4771
Number of HSP's gapped (non-prelim): 269
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)