Query 033947
Match_columns 108
No_of_seqs 105 out of 125
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 08:05:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02962 TMX2 TMX2 family; comp 97.1 0.00052 1.1E-08 50.3 3.7 31 78-108 28-58 (152)
2 cd02988 Phd_like_VIAF Phosduci 97.1 0.00054 1.2E-08 51.6 3.9 34 75-108 79-113 (192)
3 cd02987 Phd_like_Phd Phosducin 97.1 0.0006 1.3E-08 50.3 3.6 33 76-108 60-94 (175)
4 cd03006 PDI_a_EFP1_N PDIa fami 96.8 0.0014 3E-08 45.6 3.3 31 78-108 9-40 (113)
5 PRK10996 thioredoxin 2; Provis 96.7 0.0016 3.5E-08 45.6 3.2 32 75-108 32-63 (139)
6 KOG0910 Thioredoxin-like prote 96.4 0.0029 6.4E-08 48.0 2.9 29 79-108 44-72 (150)
7 cd03065 PDI_b_Calsequestrin_N 95.9 0.0083 1.8E-07 42.6 3.0 28 80-108 11-38 (120)
8 TIGR00424 APS_reduc 5'-adenyly 95.6 0.013 2.8E-07 50.4 3.6 33 76-108 349-382 (463)
9 PRK00293 dipZ thiol:disulfide 95.3 0.013 2.8E-07 50.5 2.5 26 83-108 458-485 (571)
10 cd02965 HyaE HyaE family; HyaE 94.5 0.027 5.9E-07 40.2 2.1 27 80-108 12-38 (111)
11 PTZ00443 Thioredoxin domain-co 94.3 0.046 1E-06 42.6 3.2 30 79-108 31-63 (224)
12 COG4232 Thiol:disulfide interc 94.1 0.033 7.2E-07 49.7 2.3 26 83-108 460-485 (569)
13 PLN02309 5'-adenylylsulfate re 94.0 0.059 1.3E-06 46.3 3.6 33 76-108 343-376 (457)
14 PTZ00102 disulphide isomerase; 93.6 0.058 1.3E-06 42.9 2.7 31 77-108 356-386 (477)
15 COG3118 Thioredoxin domain-con 93.2 0.069 1.5E-06 44.7 2.6 29 80-108 25-54 (304)
16 TIGR01130 ER_PDI_fam protein d 90.4 0.25 5.5E-06 38.4 2.8 31 77-108 345-375 (462)
17 cd03008 TryX_like_RdCVF Trypar 90.2 0.23 5E-06 36.4 2.3 16 93-108 21-36 (146)
18 PTZ00102 disulphide isomerase; 90.0 0.31 6.8E-06 38.8 3.0 29 78-108 32-60 (477)
19 cd03010 TlpA_like_DsbE TlpA-li 90.0 0.29 6.4E-06 32.3 2.4 13 96-108 24-36 (127)
20 PLN02399 phospholipid hydroper 88.5 0.39 8.4E-06 37.8 2.5 17 92-108 94-110 (236)
21 TIGR00385 dsbE periplasmic pro 87.1 0.51 1.1E-05 33.7 2.2 13 96-108 62-74 (173)
22 PF13899 Thioredoxin_7: Thiore 85.7 0.5 1.1E-05 29.8 1.4 14 95-108 15-28 (82)
23 PRK15412 thiol:disulfide inter 84.7 0.67 1.5E-05 33.6 1.9 13 96-108 67-79 (185)
24 PF08534 Redoxin: Redoxin; In 84.7 0.68 1.5E-05 31.1 1.8 16 93-108 24-40 (146)
25 TIGR02740 TraF-like TraF-like 83.5 1.2 2.7E-05 35.1 3.1 26 83-108 152-177 (271)
26 PLN02412 probable glutathione 82.7 1.1 2.4E-05 32.2 2.3 15 94-108 26-40 (167)
27 cd03014 PRX_Atyp2cys Peroxired 82.1 1.3 2.8E-05 29.8 2.3 13 96-108 25-37 (143)
28 PRK14018 trifunctional thiored 81.3 1 2.2E-05 39.6 2.0 13 96-108 55-67 (521)
29 COG0526 TrxA Thiol-disulfide i 81.0 1.5 3.2E-05 25.3 2.0 17 92-108 27-43 (127)
30 PTZ00056 glutathione peroxidas 80.2 1.5 3.2E-05 32.8 2.3 13 96-108 38-50 (199)
31 PRK00522 tpx lipid hydroperoxi 78.5 1.8 4E-05 30.9 2.3 15 94-108 41-55 (167)
32 KOG0190 Protein disulfide isom 77.3 2 4.3E-05 38.0 2.5 30 77-108 24-53 (493)
33 TIGR02661 MauD methylamine deh 76.5 1.9 4.2E-05 31.5 2.0 14 95-108 72-85 (189)
34 PLN02919 haloacid dehalogenase 75.8 1.9 4.1E-05 40.2 2.1 15 94-108 417-431 (1057)
35 PRK03147 thiol-disulfide oxido 75.5 2.7 5.9E-05 28.8 2.4 17 92-108 56-72 (173)
36 smart00594 UAS UAS domain. 72.8 2.5 5.4E-05 28.9 1.7 24 85-108 13-38 (122)
37 PF00578 AhpC-TSA: AhpC/TSA fa 68.7 3.9 8.4E-05 26.2 1.8 13 96-108 24-37 (124)
38 PRK09437 bcp thioredoxin-depen 64.9 5.2 0.00011 27.3 1.9 13 96-108 29-41 (154)
39 KOG0191 Thioredoxin/protein di 64.1 4.7 0.0001 32.4 1.8 32 76-108 27-58 (383)
40 TIGR02738 TrbB type-F conjugat 63.6 4.4 9.6E-05 29.6 1.5 12 97-108 50-61 (153)
41 TIGR03137 AhpC peroxiredoxin. 62.5 6.7 0.00014 28.6 2.2 13 96-108 30-43 (187)
42 cd02969 PRX_like1 Peroxiredoxi 61.9 6.1 0.00013 27.6 1.9 14 95-108 23-36 (171)
43 cd03015 PRX_Typ2cys Peroxiredo 60.9 7.5 0.00016 27.5 2.2 12 97-108 29-41 (173)
44 cd03018 PRX_AhpE_like Peroxire 60.0 8.2 0.00018 25.7 2.2 13 96-108 27-40 (149)
45 PRK10606 btuE putative glutath 59.7 8.7 0.00019 28.9 2.5 15 94-108 22-36 (183)
46 TIGR01626 ytfJ_HI0045 conserve 48.4 17 0.00037 27.8 2.5 15 94-108 56-70 (184)
47 PRK10382 alkyl hydroperoxide r 46.3 17 0.00038 27.2 2.2 24 78-108 19-43 (187)
48 TIGR02187 GlrX_arch Glutaredox 41.9 30 0.00066 25.6 2.9 20 89-108 125-144 (215)
49 COG1692 Calcineurin-like phosp 41.8 24 0.00051 29.6 2.5 23 85-107 129-153 (266)
50 PF13466 STAS_2: STAS domain 40.6 34 0.00073 21.0 2.6 28 78-105 5-34 (80)
51 PF14213 DUF4325: Domain of un 39.6 28 0.0006 22.2 2.1 16 88-105 10-25 (74)
52 KOG0914 Thioredoxin-like prote 38.7 35 0.00076 28.6 3.1 34 75-108 121-155 (265)
53 KOG0191 Thioredoxin/protein di 38.2 32 0.00068 27.7 2.7 29 79-108 145-173 (383)
54 PF13277 YmdB: YmdB-like prote 34.5 42 0.00091 27.6 2.9 22 86-107 126-149 (253)
55 TIGR00377 ant_ant_sig anti-ant 33.6 47 0.001 21.1 2.5 31 76-106 18-52 (108)
56 PTZ00256 glutathione peroxidas 32.8 40 0.00086 24.4 2.3 13 96-108 39-52 (183)
57 KOG4277 Uncharacterized conser 32.2 33 0.00072 30.4 2.1 23 86-108 31-54 (468)
58 cd07043 STAS_anti-anti-sigma_f 32.2 41 0.0009 20.5 2.0 30 77-106 15-47 (99)
59 PRK15000 peroxidase; Provision 30.0 45 0.00098 25.0 2.2 12 96-107 33-44 (200)
60 PF02114 Phosducin: Phosducin; 29.5 46 0.001 26.7 2.3 31 76-106 123-155 (265)
61 PF01113 DapB_N: Dihydrodipico 28.5 33 0.00072 23.6 1.2 18 86-106 59-76 (124)
62 PTZ00445 p36-lilke protein; Pr 27.6 56 0.0012 26.5 2.5 23 83-105 29-51 (219)
63 PF14258 DUF4350: Domain of un 26.2 60 0.0013 19.9 2.0 18 86-103 51-70 (70)
64 cd07041 STAS_RsbR_RsbS_like Su 25.2 82 0.0018 20.3 2.5 29 78-106 18-50 (109)
65 PLN02775 Probable dihydrodipic 23.4 57 0.0012 27.0 1.9 25 83-107 63-90 (286)
66 TIGR02886 spore_II_AA anti-sig 23.3 99 0.0021 19.8 2.7 30 77-106 15-48 (106)
67 PF02775 TPP_enzyme_C: Thiamin 22.3 1E+02 0.0022 21.2 2.7 21 83-103 130-152 (153)
68 KOG0190 Protein disulfide isom 22.1 72 0.0016 28.5 2.3 28 80-108 368-395 (493)
69 COG2608 CopZ Copper chaperone 21.6 2.3E+02 0.0049 18.0 4.2 42 61-102 28-70 (71)
70 cd06844 STAS Sulphate Transpor 21.4 1.1E+02 0.0023 19.7 2.5 29 78-106 16-48 (100)
71 PTZ00137 2-Cys peroxiredoxin; 21.4 76 0.0016 25.5 2.2 13 96-108 97-110 (261)
72 cd01533 4RHOD_Repeat_2 Member 21.0 1.1E+02 0.0024 19.7 2.6 22 82-104 11-32 (109)
73 COG2894 MinD Septum formation 20.2 99 0.0021 26.1 2.7 27 78-104 12-39 (272)
No 1
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.15 E-value=0.00052 Score=50.32 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=27.4
Q ss_pred ceeeecChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 78 GEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 78 g~V~e~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
..+.+.+.++|++.+++.++++|||+|||+|
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~w 58 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTW 58 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCC
Confidence 4566788899999998888899999999999
No 2
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.14 E-value=0.00054 Score=51.55 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=29.5
Q ss_pred eeeceeeecChhhHHHHHHhcC-CcEEEEEeeeeC
Q 033947 75 ATVGEVTEVNKDTFWPIVKAAG-DKTVVLDMYTQW 108 (108)
Q Consensus 75 ~~vg~V~e~dkddF~~~Lk~AG-DKLVVVDF~AtW 108 (108)
..-|.|.+.+.++|...+.+++ +++|||+|||+|
T Consensus 79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~w 113 (192)
T cd02988 79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDG 113 (192)
T ss_pred CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCC
Confidence 3578999999999998887775 589999999999
No 3
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.09 E-value=0.0006 Score=50.30 Aligned_cols=33 Identities=30% Similarity=0.571 Sum_probs=27.8
Q ss_pred eeceeeecCh-hhHHHHHHhcC-CcEEEEEeeeeC
Q 033947 76 TVGEVTEVNK-DTFWPIVKAAG-DKTVVLDMYTQW 108 (108)
Q Consensus 76 ~vg~V~e~dk-ddF~~~Lk~AG-DKLVVVDF~AtW 108 (108)
.-|.|.+.+. ++|.+.+.+++ +++|||+|||+|
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~w 94 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPG 94 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCC
Confidence 4788888555 99999998765 579999999999
No 4
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=96.81 E-value=0.0014 Score=45.59 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.0
Q ss_pred ceeeecChhhHHHHHH-hcCCcEEEEEeeeeC
Q 033947 78 GEVTEVNKDTFWPIVK-AAGDKTVVLDMYTQW 108 (108)
Q Consensus 78 g~V~e~dkddF~~~Lk-~AGDKLVVVDF~AtW 108 (108)
..|.+.+++.|..+.. ..++++|+|+|||+|
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~W 40 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPW 40 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCC
Confidence 3467888999998743 678999999999999
No 5
>PRK10996 thioredoxin 2; Provisional
Probab=96.73 E-value=0.0016 Score=45.64 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=26.7
Q ss_pred eeeceeeecChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 75 ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 75 ~~vg~V~e~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
...|.+.+.+.++|+.++++ +|+|+|+|||+|
T Consensus 32 ~~~~~~i~~~~~~~~~~i~~--~k~vvv~F~a~w 63 (139)
T PRK10996 32 LFDGEVINATGETLDKLLQD--DLPVVIDFWAPW 63 (139)
T ss_pred cCCCCCEEcCHHHHHHHHhC--CCeEEEEEECCC
Confidence 44566777889999998853 799999999999
No 6
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0029 Score=48.03 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.3
Q ss_pred eeeecChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 79 EVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 79 ~V~e~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
.+...+.++|+..+.++ |.+|+|||+|+|
T Consensus 44 ~~~~~s~~~~~~~Vi~S-~~PVlVdF~A~W 72 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINS-DVPVLVDFHAEW 72 (150)
T ss_pred cccccCHHHHHHHHHcc-CCCEEEEEecCc
Confidence 34448899999999766 569999999999
No 7
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=95.89 E-value=0.0083 Score=42.61 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=23.2
Q ss_pred eeecChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 80 VTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 80 V~e~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
|.+.+.++|++.+ ...+++||+||+|.|
T Consensus 11 v~~lt~~nF~~~v-~~~~~~vvv~f~a~w 38 (120)
T cd03065 11 VIDLNEKNYKQVL-KKYDVLCLLYHEPVE 38 (120)
T ss_pred eeeCChhhHHHHH-HhCCceEEEEECCCc
Confidence 4557789999999 556679999999998
No 8
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=95.60 E-value=0.013 Score=50.40 Aligned_cols=33 Identities=12% Similarity=0.362 Sum_probs=28.3
Q ss_pred eeceeeecChhhHHHHHH-hcCCcEEEEEeeeeC
Q 033947 76 TVGEVTEVNKDTFWPIVK-AAGDKTVVLDMYTQW 108 (108)
Q Consensus 76 ~vg~V~e~dkddF~~~Lk-~AGDKLVVVDF~AtW 108 (108)
+...|.+.+.+.|+..|+ +..+|+|+|+|||+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApW 382 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPW 382 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCC
Confidence 344677789999999997 678999999999999
No 9
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=95.26 E-value=0.013 Score=50.49 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.2
Q ss_pred cChhhHHHHHHhcC--CcEEEEEeeeeC
Q 033947 83 VNKDTFWPIVKAAG--DKTVVLDMYTQW 108 (108)
Q Consensus 83 ~dkddF~~~Lk~AG--DKLVVVDF~AtW 108 (108)
.+.+||++++++|. +|+|+|||||+|
T Consensus 458 ~s~~~l~~~l~~a~~~gK~VlVdF~A~W 485 (571)
T PRK00293 458 KTVAELDQALAEAKGKGKPVMLDLYADW 485 (571)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 67899999998764 689999999999
No 10
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=94.46 E-value=0.027 Score=40.20 Aligned_cols=27 Identities=22% Similarity=0.074 Sum_probs=21.7
Q ss_pred eeecChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 80 VTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 80 V~e~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
..+.|++.|++.+ +| |..+||+|+|+|
T Consensus 12 ~~~~~~~~~~~~~-~~-~~~~v~~f~~~~ 38 (111)
T cd02965 12 WPRVDAATLDDWL-AA-GGDLVLLLAGDP 38 (111)
T ss_pred CcccccccHHHHH-hC-CCCEEEEecCCc
Confidence 4568999999888 44 457889999998
No 11
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=94.30 E-value=0.046 Score=42.55 Aligned_cols=30 Identities=17% Similarity=0.420 Sum_probs=25.4
Q ss_pred eeeecChhhHHHHHHhc---CCcEEEEEeeeeC
Q 033947 79 EVTEVNKDTFWPIVKAA---GDKTVVLDMYTQW 108 (108)
Q Consensus 79 ~V~e~dkddF~~~Lk~A---GDKLVVVDF~AtW 108 (108)
.|.+.+.++|+..+++. .++.|+|+|||+|
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApW 63 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPW 63 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEECCC
Confidence 46778899999988754 3689999999999
No 12
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.11 E-value=0.033 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.5
Q ss_pred cChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 83 VNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 83 ~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
.+.++.++.|.++.+|+|.|||||.|
T Consensus 460 s~~~~L~~~la~~~~~pVmlDfyAdW 485 (569)
T COG4232 460 SPLAELDQALAEAKAKPVMLDFYADW 485 (569)
T ss_pred CCHHHHHHHHHhCCCCcEEEeeehhH
Confidence 44559999999999999999999999
No 13
>PLN02309 5'-adenylylsulfate reductase
Probab=94.05 E-value=0.059 Score=46.29 Aligned_cols=33 Identities=12% Similarity=0.347 Sum_probs=27.6
Q ss_pred eeceeeecChhhHHHHHH-hcCCcEEEEEeeeeC
Q 033947 76 TVGEVTEVNKDTFWPIVK-AAGDKTVVLDMYTQW 108 (108)
Q Consensus 76 ~vg~V~e~dkddF~~~Lk-~AGDKLVVVDF~AtW 108 (108)
.-+.|.+.+.++|++.++ ...+|.|+|+|||+|
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApW 376 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPW 376 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCC
Confidence 335677789999999986 467899999999999
No 14
>PTZ00102 disulphide isomerase; Provisional
Probab=93.61 E-value=0.058 Score=42.86 Aligned_cols=31 Identities=42% Similarity=0.659 Sum_probs=25.6
Q ss_pred eceeeecChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 77 VGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 77 vg~V~e~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
.+.|..++.++|++++.+. +|.|+|+|||+|
T Consensus 356 ~~~v~~l~~~~f~~~v~~~-~k~vlv~f~a~w 386 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKS-DKDVLLEIYAPW 386 (477)
T ss_pred CCCeEEecccchHHHHhcC-CCCEEEEEECCC
Confidence 3457778889999998655 589999999999
No 15
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.069 Score=44.71 Aligned_cols=29 Identities=21% Similarity=0.536 Sum_probs=24.9
Q ss_pred eeecChhhHHHHHH-hcCCcEEEEEeeeeC
Q 033947 80 VTEVNKDTFWPIVK-AAGDKTVVLDMYTQW 108 (108)
Q Consensus 80 V~e~dkddF~~~Lk-~AGDKLVVVDF~AtW 108 (108)
|++++...|...+. ....++|+|||||+|
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~ 54 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPW 54 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCC
Confidence 88999999987766 456669999999999
No 16
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=90.42 E-value=0.25 Score=38.39 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=25.6
Q ss_pred eceeeecChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 77 VGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 77 vg~V~e~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
-+.|...+.++|++.+.+. ++.|+|+|||+|
T Consensus 345 ~~~v~~l~~~~f~~~v~~~-~~~vlv~f~a~w 375 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDE-TKDVLVEFYAPW 375 (462)
T ss_pred CCccEEeeCcCHHHHhccC-CCeEEEEEECCC
Confidence 4566668889999998654 689999999999
No 17
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=90.20 E-value=0.23 Score=36.38 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=13.4
Q ss_pred HhcCCcEEEEEeeeeC
Q 033947 93 KAAGDKTVVLDMYTQW 108 (108)
Q Consensus 93 k~AGDKLVVVDF~AtW 108 (108)
.+-.+|+|+|+|+|+|
T Consensus 21 s~~kgk~vlL~FwAsW 36 (146)
T cd03008 21 ARLENRVLLLFFGAVV 36 (146)
T ss_pred HHhCCCEEEEEEECCC
Confidence 3446799999999999
No 18
>PTZ00102 disulphide isomerase; Provisional
Probab=90.03 E-value=0.31 Score=38.76 Aligned_cols=29 Identities=24% Similarity=0.565 Sum_probs=24.0
Q ss_pred ceeeecChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 78 GEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 78 g~V~e~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
..+.+.+.++|+.++++ .++|+|+|||+|
T Consensus 32 ~~v~~l~~~~f~~~i~~--~~~~lv~f~a~w 60 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITE--NEIVLVKFYAPW 60 (477)
T ss_pred CCcEEcchhhHHHHHhc--CCcEEEEEECCC
Confidence 34667889999999954 469999999999
No 19
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=89.98 E-value=0.29 Score=32.26 Aligned_cols=13 Identities=23% Similarity=0.767 Sum_probs=11.7
Q ss_pred CCcEEEEEeeeeC
Q 033947 96 GDKTVVLDMYTQW 108 (108)
Q Consensus 96 GDKLVVVDF~AtW 108 (108)
.+|.|||+|+|+|
T Consensus 24 ~gk~vvv~F~a~~ 36 (127)
T cd03010 24 KGKPYLLNVWASW 36 (127)
T ss_pred CCCEEEEEEEcCc
Confidence 3789999999999
No 20
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=88.49 E-value=0.39 Score=37.79 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=13.5
Q ss_pred HHhcCCcEEEEEeeeeC
Q 033947 92 VKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 92 Lk~AGDKLVVVDF~AtW 108 (108)
|.+-.+|.|||.|+|+|
T Consensus 94 Lsd~kGK~vvl~FwAsw 110 (236)
T PLN02399 94 LSKFKGKVLLIVNVASK 110 (236)
T ss_pred HHHhCCCeEEEEEEcCC
Confidence 33435699999999999
No 21
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=87.11 E-value=0.51 Score=33.66 Aligned_cols=13 Identities=31% Similarity=0.884 Sum_probs=12.2
Q ss_pred CCcEEEEEeeeeC
Q 033947 96 GDKTVVLDMYTQW 108 (108)
Q Consensus 96 GDKLVVVDF~AtW 108 (108)
++|.|+|+|||+|
T Consensus 62 ~gk~vll~F~a~w 74 (173)
T TIGR00385 62 QGKPVLLNVWASW 74 (173)
T ss_pred CCCEEEEEEECCc
Confidence 6799999999999
No 22
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=85.66 E-value=0.5 Score=29.81 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=12.6
Q ss_pred cCCcEEEEEeeeeC
Q 033947 95 AGDKTVVLDMYTQW 108 (108)
Q Consensus 95 AGDKLVVVDF~AtW 108 (108)
+.+|+|.|+|+|+|
T Consensus 15 ~~~kpvlv~f~a~w 28 (82)
T PF13899_consen 15 KEGKPVLVDFGADW 28 (82)
T ss_dssp HHTSEEEEEEETTT
T ss_pred HcCCCEEEEEECCC
Confidence 45899999999999
No 23
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=84.71 E-value=0.67 Score=33.59 Aligned_cols=13 Identities=31% Similarity=0.879 Sum_probs=12.2
Q ss_pred CCcEEEEEeeeeC
Q 033947 96 GDKTVVLDMYTQW 108 (108)
Q Consensus 96 GDKLVVVDF~AtW 108 (108)
.+|.|||+|||+|
T Consensus 67 ~gk~vvv~Fwatw 79 (185)
T PRK15412 67 QGKPVLLNVWATW 79 (185)
T ss_pred CCCEEEEEEECCC
Confidence 6899999999999
No 24
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=84.69 E-value=0.68 Score=31.12 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=13.5
Q ss_pred HhcCCcEEEEEeeee-C
Q 033947 93 KAAGDKTVVLDMYTQ-W 108 (108)
Q Consensus 93 k~AGDKLVVVDF~At-W 108 (108)
.+..+|.|||+||++ |
T Consensus 24 ~~~~gk~~vv~f~~~~~ 40 (146)
T PF08534_consen 24 SDFKGKPVVVNFWASAW 40 (146)
T ss_dssp GGGTTSEEEEEEESTTT
T ss_pred HHhCCCeEEEEEEccCC
Confidence 346789999999999 8
No 25
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=83.46 E-value=1.2 Score=35.11 Aligned_cols=26 Identities=12% Similarity=0.053 Sum_probs=20.8
Q ss_pred cChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 83 VNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 83 ~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
..+++-...|++-.+|.++|+|||+|
T Consensus 152 ~~~~~~~~~l~~l~~k~~Lv~F~Asw 177 (271)
T TIGR02740 152 TAKKQKDRVMKDLAKKSGLFFFFKSD 177 (271)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEECCC
Confidence 34455567788888999999999999
No 26
>PLN02412 probable glutathione peroxidase
Probab=82.69 E-value=1.1 Score=32.17 Aligned_cols=15 Identities=7% Similarity=-0.057 Sum_probs=12.4
Q ss_pred hcCCcEEEEEeeeeC
Q 033947 94 AAGDKTVVLDMYTQW 108 (108)
Q Consensus 94 ~AGDKLVVVDF~AtW 108 (108)
+..+|.|||.|+|+|
T Consensus 26 ~~~gk~vlv~f~a~~ 40 (167)
T PLN02412 26 QYKGKVLLIVNVASK 40 (167)
T ss_pred HhCCCEEEEEEeCCC
Confidence 334599999999998
No 27
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=82.08 E-value=1.3 Score=29.75 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=11.4
Q ss_pred CCcEEEEEeeeeC
Q 033947 96 GDKTVVLDMYTQW 108 (108)
Q Consensus 96 GDKLVVVDF~AtW 108 (108)
.+|.|||.||++|
T Consensus 25 ~gk~vvl~f~~~~ 37 (143)
T cd03014 25 AGKVKVISVFPSI 37 (143)
T ss_pred CCCeEEEEEEcCC
Confidence 4589999999988
No 28
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=81.27 E-value=1 Score=39.62 Aligned_cols=13 Identities=23% Similarity=0.838 Sum_probs=12.4
Q ss_pred CCcEEEEEeeeeC
Q 033947 96 GDKTVVLDMYTQW 108 (108)
Q Consensus 96 GDKLVVVDF~AtW 108 (108)
.+|.|||+|||+|
T Consensus 55 kGKpVvV~FWATW 67 (521)
T PRK14018 55 KDKPTLIKFWASW 67 (521)
T ss_pred CCCEEEEEEEcCC
Confidence 7899999999999
No 29
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=80.96 E-value=1.5 Score=25.32 Aligned_cols=17 Identities=24% Similarity=0.687 Sum_probs=13.2
Q ss_pred HHhcCCcEEEEEeeeeC
Q 033947 92 VKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 92 Lk~AGDKLVVVDF~AtW 108 (108)
+...++++|+|+|++.|
T Consensus 27 ~~~~~~~~~~v~f~~~~ 43 (127)
T COG0526 27 LSELKGKPVLVDFWAPW 43 (127)
T ss_pred hhhcCCceEEEEEEcCc
Confidence 33344999999999988
No 30
>PTZ00056 glutathione peroxidase; Provisional
Probab=80.17 E-value=1.5 Score=32.80 Aligned_cols=13 Identities=8% Similarity=0.097 Sum_probs=11.8
Q ss_pred CCcEEEEEeeeeC
Q 033947 96 GDKTVVLDMYTQW 108 (108)
Q Consensus 96 GDKLVVVDF~AtW 108 (108)
.+|.|||.|+|+|
T Consensus 38 kGkvvlv~fwAsw 50 (199)
T PTZ00056 38 KNKVLMITNSASK 50 (199)
T ss_pred CCCEEEEEEECCC
Confidence 4689999999999
No 31
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=78.52 E-value=1.8 Score=30.91 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=12.4
Q ss_pred hcCCcEEEEEeeeeC
Q 033947 94 AAGDKTVVLDMYTQW 108 (108)
Q Consensus 94 ~AGDKLVVVDF~AtW 108 (108)
+-.+|.|||.|||.|
T Consensus 41 ~~~Gk~vvl~f~~s~ 55 (167)
T PRK00522 41 DFAGKRKVLNIFPSI 55 (167)
T ss_pred HhCCCEEEEEEEcCC
Confidence 334689999999998
No 32
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=77.26 E-value=2 Score=38.02 Aligned_cols=30 Identities=27% Similarity=0.621 Sum_probs=25.4
Q ss_pred eceeeecChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 77 VGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 77 vg~V~e~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
-..|.+++++.|...+ .++..|.|-|||+|
T Consensus 24 ~~~Vl~Lt~dnf~~~i--~~~~~vlVeFYAPW 53 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETI--NGHEFVLVEFYAPW 53 (493)
T ss_pred ccceEEEecccHHHHh--ccCceEEEEEEchh
Confidence 3456668999999999 57789999999999
No 33
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=76.47 E-value=1.9 Score=31.48 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=12.5
Q ss_pred cCCcEEEEEeeeeC
Q 033947 95 AGDKTVVLDMYTQW 108 (108)
Q Consensus 95 AGDKLVVVDF~AtW 108 (108)
..+|.|||.|+|+|
T Consensus 72 ~~gk~vvl~F~atw 85 (189)
T TIGR02661 72 APGRPTLLMFTAPS 85 (189)
T ss_pred cCCCEEEEEEECCC
Confidence 46799999999999
No 34
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=75.77 E-value=1.9 Score=40.17 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=13.1
Q ss_pred hcCCcEEEEEeeeeC
Q 033947 94 AAGDKTVVLDMYTQW 108 (108)
Q Consensus 94 ~AGDKLVVVDF~AtW 108 (108)
+-.+|.|||||||+|
T Consensus 417 ~lkGK~vll~FWAsW 431 (1057)
T PLN02919 417 DLKGKVVILDFWTYC 431 (1057)
T ss_pred hcCCCEEEEEEECCc
Confidence 346899999999999
No 35
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=75.47 E-value=2.7 Score=28.77 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=13.6
Q ss_pred HHhcCCcEEEEEeeeeC
Q 033947 92 VKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 92 Lk~AGDKLVVVDF~AtW 108 (108)
|.+..+|.++|.|+|+|
T Consensus 56 l~~~~~k~~~l~f~a~~ 72 (173)
T PRK03147 56 LKDLKGKGVFLNFWGTW 72 (173)
T ss_pred HHHcCCCEEEEEEECCc
Confidence 33446799999999998
No 36
>smart00594 UAS UAS domain.
Probab=72.80 E-value=2.5 Score=28.85 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=19.0
Q ss_pred hhhHHHHHHhcC--CcEEEEEeeeeC
Q 033947 85 KDTFWPIVKAAG--DKTVVLDMYTQW 108 (108)
Q Consensus 85 kddF~~~Lk~AG--DKLVVVDF~AtW 108 (108)
...|++++++|. +|+++|+|+++|
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~ 38 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQD 38 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCC
Confidence 346778887764 569999999998
No 37
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=68.74 E-value=3.9 Score=26.20 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=11.5
Q ss_pred CCcEEEEEeeee-C
Q 033947 96 GDKTVVLDMYTQ-W 108 (108)
Q Consensus 96 GDKLVVVDF~At-W 108 (108)
.+|.+||.||++ |
T Consensus 24 ~gk~~vl~f~~~~~ 37 (124)
T PF00578_consen 24 KGKPVVLFFWPTAW 37 (124)
T ss_dssp TTSEEEEEEESTTT
T ss_pred CCCcEEEEEeCccC
Confidence 569999999998 7
No 38
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=64.89 E-value=5.2 Score=27.34 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=10.6
Q ss_pred CCcEEEEEeeeeC
Q 033947 96 GDKTVVLDMYTQW 108 (108)
Q Consensus 96 GDKLVVVDF~AtW 108 (108)
.+|.+||+|+++|
T Consensus 29 ~gk~~ll~f~~~~ 41 (154)
T PRK09437 29 QGQRVLVYFYPKA 41 (154)
T ss_pred CCCCEEEEEECCC
Confidence 4588999999875
No 39
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=64.05 E-value=4.7 Score=32.40 Aligned_cols=32 Identities=25% Similarity=0.657 Sum_probs=23.4
Q ss_pred eeceeeecChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 76 TVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 76 ~vg~V~e~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
..|+..+.....|...+ ...++.++|+|||.|
T Consensus 27 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~fyapw 58 (383)
T KOG0191|consen 27 ASGVVSELTLDSFFDFL-LKDDSPWLVEFYAPW 58 (383)
T ss_pred cccchhhhhccccHHHh-hccCCceEEEEECCC
Confidence 34455554566677666 677889999999999
No 40
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=63.63 E-value=4.4 Score=29.61 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=9.8
Q ss_pred CcEEEEEeeeeC
Q 033947 97 DKTVVLDMYTQW 108 (108)
Q Consensus 97 DKLVVVDF~AtW 108 (108)
++.++|+|||+|
T Consensus 50 ~~~~lvnFWAsW 61 (153)
T TIGR02738 50 DDYALVFFYQST 61 (153)
T ss_pred CCCEEEEEECCC
Confidence 345699999999
No 41
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=62.52 E-value=6.7 Score=28.62 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=11.1
Q ss_pred CCcEEEEEee-eeC
Q 033947 96 GDKTVVLDMY-TQW 108 (108)
Q Consensus 96 GDKLVVVDF~-AtW 108 (108)
.+|.|||.|| ++|
T Consensus 30 ~Gk~vvl~F~p~~~ 43 (187)
T TIGR03137 30 KGKWSVFFFYPADF 43 (187)
T ss_pred CCCEEEEEEECCCc
Confidence 4689999999 888
No 42
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=61.89 E-value=6.1 Score=27.64 Aligned_cols=14 Identities=21% Similarity=0.257 Sum_probs=12.3
Q ss_pred cCCcEEEEEeeeeC
Q 033947 95 AGDKTVVLDMYTQW 108 (108)
Q Consensus 95 AGDKLVVVDF~AtW 108 (108)
+++|.|||.|+++|
T Consensus 23 ~~~k~~ll~f~~t~ 36 (171)
T cd02969 23 ADGKALVVMFICNH 36 (171)
T ss_pred hCCCEEEEEEECCC
Confidence 36799999999998
No 43
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=60.95 E-value=7.5 Score=27.49 Aligned_cols=12 Identities=42% Similarity=0.520 Sum_probs=10.2
Q ss_pred CcEEEEEee-eeC
Q 033947 97 DKTVVLDMY-TQW 108 (108)
Q Consensus 97 DKLVVVDF~-AtW 108 (108)
+|.|||.|| ++|
T Consensus 29 Gk~vvl~F~~~~~ 41 (173)
T cd03015 29 GKWVVLFFYPLDF 41 (173)
T ss_pred CCEEEEEEECCCC
Confidence 489999999 777
No 44
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=60.03 E-value=8.2 Score=25.75 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=10.5
Q ss_pred CCcEEEEEee-eeC
Q 033947 96 GDKTVVLDMY-TQW 108 (108)
Q Consensus 96 GDKLVVVDF~-AtW 108 (108)
|+|.+||.|+ |+|
T Consensus 27 g~k~~vl~f~~~~~ 40 (149)
T cd03018 27 GRKPVVLVFFPLAF 40 (149)
T ss_pred CCCeEEEEEeCCCC
Confidence 5588888888 887
No 45
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=59.75 E-value=8.7 Score=28.93 Aligned_cols=15 Identities=0% Similarity=-0.079 Sum_probs=12.3
Q ss_pred hcCCcEEEEEeeeeC
Q 033947 94 AAGDKTVVLDMYTQW 108 (108)
Q Consensus 94 ~AGDKLVVVDF~AtW 108 (108)
+-.+|.|+|.|+|+|
T Consensus 22 ~~~GKvvLVvf~AS~ 36 (183)
T PRK10606 22 KYAGNVLLIVNVASK 36 (183)
T ss_pred HhCCCEEEEEEEeCC
Confidence 334599999999998
No 46
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=48.37 E-value=17 Score=27.84 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=13.1
Q ss_pred hcCCcEEEEEeeeeC
Q 033947 94 AAGDKTVVLDMYTQW 108 (108)
Q Consensus 94 ~AGDKLVVVDF~AtW 108 (108)
+-.+|.++|+|+|+|
T Consensus 56 ~l~GKV~lvn~~Asw 70 (184)
T TIGR01626 56 ELAGKVRVVHHIAGR 70 (184)
T ss_pred HcCCCEEEEEEEecC
Confidence 345899999999999
No 47
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=46.25 E-value=17 Score=27.20 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=16.7
Q ss_pred ceeeecChhhHHHHHHhcCCcEEEEEee-eeC
Q 033947 78 GEVTEVNKDTFWPIVKAAGDKTVVLDMY-TQW 108 (108)
Q Consensus 78 g~V~e~dkddF~~~Lk~AGDKLVVVDF~-AtW 108 (108)
|...+++.++| .+|.|||.|| ++|
T Consensus 19 g~~~~v~L~d~-------~Gk~vvL~F~P~~~ 43 (187)
T PRK10382 19 GEFIEVTEKDT-------EGRWSVFFFYPADF 43 (187)
T ss_pred CcceEEEHHHh-------CCCeEEEEEECCCC
Confidence 44444555555 4679999999 887
No 48
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=41.86 E-value=30 Score=25.57 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=11.4
Q ss_pred HHHHHhcCCcEEEEEeeeeC
Q 033947 89 WPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 89 ~~~Lk~AGDKLVVVDF~AtW 108 (108)
.+.|++-....+|+.|+|+|
T Consensus 125 ~~~l~~~~~pv~I~~F~a~~ 144 (215)
T TIGR02187 125 VELLQSLDEPVRIEVFVTPT 144 (215)
T ss_pred HHHHHhcCCCcEEEEEECCC
Confidence 34444433344555599998
No 49
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=41.77 E-value=24 Score=29.59 Aligned_cols=23 Identities=4% Similarity=0.016 Sum_probs=17.3
Q ss_pred hhhHHHHHHhcCCc--EEEEEeeee
Q 033947 85 KDTFWPIVKAAGDK--TVVLDMYTQ 107 (108)
Q Consensus 85 kddF~~~Lk~AGDK--LVVVDF~At 107 (108)
=+.++++|.++..+ +++|||.|.
T Consensus 129 F~~~d~l~~~~~~~~~~iiVDFHAE 153 (266)
T COG1692 129 FKAADKLLDEIKLGTDLIIVDFHAE 153 (266)
T ss_pred HHHHHHHHHhCccCCceEEEEcccc
Confidence 35667777766555 999999985
No 50
>PF13466 STAS_2: STAS domain
Probab=40.62 E-value=34 Score=20.96 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=18.3
Q ss_pred ceeeecChhhHHHHHHhc--CCcEEEEEee
Q 033947 78 GEVTEVNKDTFWPIVKAA--GDKTVVLDMY 105 (108)
Q Consensus 78 g~V~e~dkddF~~~Lk~A--GDKLVVVDF~ 105 (108)
|.+...+-++++..|.++ .++.|+|||.
T Consensus 5 G~l~~~~~~~l~~~l~~~~~~~~~v~lDls 34 (80)
T PF13466_consen 5 GELDIATAPELRQALQALLASGRPVVLDLS 34 (80)
T ss_pred EEEeHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 455555566666666654 2389999985
No 51
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=39.65 E-value=28 Score=22.25 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=10.8
Q ss_pred HHHHHHhcCCcEEEEEee
Q 033947 88 FWPIVKAAGDKTVVLDMY 105 (108)
Q Consensus 88 F~~~Lk~AGDKLVVVDF~ 105 (108)
+.+.| +.|++ |+|||-
T Consensus 10 i~~~l-~~~~~-V~lDF~ 25 (74)
T PF14213_consen 10 IEPAL-KEGEK-VVLDFE 25 (74)
T ss_pred HHHHH-hcCCe-EEEECC
Confidence 44555 55666 999994
No 52
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.66 E-value=35 Score=28.62 Aligned_cols=34 Identities=6% Similarity=0.095 Sum_probs=28.0
Q ss_pred eeeceeee-cChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 75 ATVGEVTE-VNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 75 ~~vg~V~e-~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
.--++++- .+.+.+++.|.....+--+|.|||.|
T Consensus 121 ~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~w 155 (265)
T KOG0914|consen 121 SGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACW 155 (265)
T ss_pred CCchheeeecchhhHHHHhccCCceEEEEEEEeec
Confidence 34456666 68888999998888889999999999
No 53
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.23 E-value=32 Score=27.74 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=22.1
Q ss_pred eeeecChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 79 EVTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 79 ~V~e~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
.+-+...+.|....+ ..++...|.|||+|
T Consensus 145 ~v~~l~~~~~~~~~~-~~~~~~lv~f~aPw 173 (383)
T KOG0191|consen 145 EVFELTKDNFDETVK-DSDADWLVEFYAPW 173 (383)
T ss_pred ceEEccccchhhhhh-ccCcceEEEEeccc
Confidence 366788888988774 45567778889998
No 54
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=34.54 E-value=42 Score=27.57 Aligned_cols=22 Identities=5% Similarity=0.172 Sum_probs=13.6
Q ss_pred hhHHHHHHh--cCCcEEEEEeeee
Q 033947 86 DTFWPIVKA--AGDKTVVLDMYTQ 107 (108)
Q Consensus 86 ddF~~~Lk~--AGDKLVVVDF~At 107 (108)
..++++|++ ...+.++|||.|+
T Consensus 126 ~~~d~~l~~l~~~~~~iiVDFHAE 149 (253)
T PF13277_consen 126 RAADRLLEELKEETDIIIVDFHAE 149 (253)
T ss_dssp HHHHHHHHH-----SEEEEEEE-S
T ss_pred HHHHHHHHhccccCCEEEEEeecC
Confidence 345566666 7888999999985
No 55
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=33.59 E-value=47 Score=21.07 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=22.5
Q ss_pred eeceeeecChhhHHHHHHhc----CCcEEEEEeee
Q 033947 76 TVGEVTEVNKDTFWPIVKAA----GDKTVVLDMYT 106 (108)
Q Consensus 76 ~vg~V~e~dkddF~~~Lk~A----GDKLVVVDF~A 106 (108)
..|.++..+.++|++.|.++ +.+.||+||..
T Consensus 18 ~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 18 LSGELDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EecccccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 44666667788888877643 56889999864
No 56
>PTZ00256 glutathione peroxidase; Provisional
Probab=32.79 E-value=40 Score=24.41 Aligned_cols=13 Identities=8% Similarity=-0.015 Sum_probs=8.5
Q ss_pred CCc-EEEEEeeeeC
Q 033947 96 GDK-TVVLDMYTQW 108 (108)
Q Consensus 96 GDK-LVVVDF~AtW 108 (108)
.+| +|++-|+|+|
T Consensus 39 ~Gk~vvlv~n~atw 52 (183)
T PTZ00256 39 KGKKAIIVVNVACK 52 (183)
T ss_pred CCCcEEEEEEECCC
Confidence 345 5555668998
No 57
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=32.23 E-value=33 Score=30.42 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=16.3
Q ss_pred hhHHHHHHh-cCCcEEEEEeeeeC
Q 033947 86 DTFWPIVKA-AGDKTVVLDMYTQW 108 (108)
Q Consensus 86 ddF~~~Lk~-AGDKLVVVDF~AtW 108 (108)
+|+...+++ ..|..-.|||||+|
T Consensus 31 eDLddkFkdnkdddiW~VdFYAPW 54 (468)
T KOG4277|consen 31 EDLDDKFKDNKDDDIWFVDFYAPW 54 (468)
T ss_pred hhhhHHhhhcccCCeEEEEeechh
Confidence 445455554 46678899999999
No 58
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=32.16 E-value=41 Score=20.50 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=20.4
Q ss_pred eceeeecChhhHHHHHHhc---CCcEEEEEeee
Q 033947 77 VGEVTEVNKDTFWPIVKAA---GDKTVVLDMYT 106 (108)
Q Consensus 77 vg~V~e~dkddF~~~Lk~A---GDKLVVVDF~A 106 (108)
.|.+...+.++|++.+.++ +.+.|++||..
T Consensus 15 ~G~l~~~~~~~~~~~~~~~~~~~~~~viid~~~ 47 (99)
T cd07043 15 SGELDAATAPELREALEELLAEGPRRLVLDLSG 47 (99)
T ss_pred eceecccchHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4566666677888876543 23789999853
No 59
>PRK15000 peroxidase; Provisional
Probab=30.01 E-value=45 Score=24.97 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=10.7
Q ss_pred CCcEEEEEeeee
Q 033947 96 GDKTVVLDMYTQ 107 (108)
Q Consensus 96 GDKLVVVDF~At 107 (108)
++|.|||.||+.
T Consensus 33 ~gk~vvL~F~p~ 44 (200)
T PRK15000 33 NGKTTVLFFWPM 44 (200)
T ss_pred CCCEEEEEEECC
Confidence 579999999995
No 60
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=29.51 E-value=46 Score=26.67 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=20.1
Q ss_pred eeceeeec-ChhhHHHHHHhc-CCcEEEEEeee
Q 033947 76 TVGEVTEV-NKDTFWPIVKAA-GDKTVVLDMYT 106 (108)
Q Consensus 76 ~vg~V~e~-dkddF~~~Lk~A-GDKLVVVDF~A 106 (108)
.-|.|.++ +.++|-.++... .+..|||-||-
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~ 155 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYE 155 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTSSTT-EEEEEEE-
T ss_pred cCceEEEccChhhHHHHHhccCCCcEEEEEEEe
Confidence 46889995 568898888654 46789999984
No 61
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=28.54 E-value=33 Score=23.58 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=11.7
Q ss_pred hhHHHHHHhcCCcEEEEEeee
Q 033947 86 DTFWPIVKAAGDKTVVLDMYT 106 (108)
Q Consensus 86 ddF~~~Lk~AGDKLVVVDF~A 106 (108)
+++++.+++ .| |||||+.
T Consensus 59 ~~l~~~~~~-~D--VvIDfT~ 76 (124)
T PF01113_consen 59 DDLEELLEE-AD--VVIDFTN 76 (124)
T ss_dssp S-HHHHTTH--S--EEEEES-
T ss_pred hhHHHhccc-CC--EEEEcCC
Confidence 667777766 55 9999984
No 62
>PTZ00445 p36-lilke protein; Provisional
Probab=27.63 E-value=56 Score=26.48 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.2
Q ss_pred cChhhHHHHHHhcCCcEEEEEee
Q 033947 83 VNKDTFWPIVKAAGDKTVVLDMY 105 (108)
Q Consensus 83 ~dkddF~~~Lk~AGDKLVVVDF~ 105 (108)
...+-|...|++.|=|+|++||-
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~D 51 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFD 51 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecch
Confidence 34678999999999999999994
No 63
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=26.22 E-value=60 Score=19.90 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=13.2
Q ss_pred hhHHHHHH--hcCCcEEEEE
Q 033947 86 DTFWPIVK--AAGDKTVVLD 103 (108)
Q Consensus 86 ddF~~~Lk--~AGDKLVVVD 103 (108)
++++..++ ++|++||+++
T Consensus 51 ~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 51 EEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred HHHHHHHHHHHcCCEEEEeC
Confidence 66665543 7999999985
No 64
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=25.21 E-value=82 Score=20.29 Aligned_cols=29 Identities=10% Similarity=0.272 Sum_probs=19.0
Q ss_pred ceeeecChhhHHHHHH----hcCCcEEEEEeee
Q 033947 78 GEVTEVNKDTFWPIVK----AAGDKTVVLDMYT 106 (108)
Q Consensus 78 g~V~e~dkddF~~~Lk----~AGDKLVVVDF~A 106 (108)
|.+...+-++|.+.|. +.+-+.||+||..
T Consensus 18 G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~ 50 (109)
T cd07041 18 GDLDDERAEQLQERLLEAISRRRARGVIIDLTG 50 (109)
T ss_pred eeECHHHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4455556677776542 2456899999964
No 65
>PLN02775 Probable dihydrodipicolinate reductase
Probab=23.43 E-value=57 Score=26.97 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=17.7
Q ss_pred cChhhHHHHHHhc---CCcEEEEEeeee
Q 033947 83 VNKDTFWPIVKAA---GDKTVVLDMYTQ 107 (108)
Q Consensus 83 ~dkddF~~~Lk~A---GDKLVVVDF~At 107 (108)
...+++...|.+. .-.+|+|||+.+
T Consensus 63 ~~~~dl~~~l~~~~~~~~~~VvIDFT~P 90 (286)
T PLN02775 63 VGPSEREAVLSSVKAEYPNLIVVDYTLP 90 (286)
T ss_pred ecCccHHHHHHHhhccCCCEEEEECCCh
Confidence 3357777777655 566899999853
No 66
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=23.28 E-value=99 Score=19.79 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=20.7
Q ss_pred eceeeecChhhHHHHHHhc----CCcEEEEEeee
Q 033947 77 VGEVTEVNKDTFWPIVKAA----GDKTVVLDMYT 106 (108)
Q Consensus 77 vg~V~e~dkddF~~~Lk~A----GDKLVVVDF~A 106 (108)
.|.+...+.+.|++.+.++ +-+.||+||..
T Consensus 15 ~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~ 48 (106)
T TIGR02886 15 SGELDHHTAERVRRKIDDAIERRPIKHLILNLKN 48 (106)
T ss_pred ecccchhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 3555556777788777543 45899999964
No 67
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=22.34 E-value=1e+02 Score=21.21 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=17.1
Q ss_pred cChhhHHHHHHhc--CCcEEEEE
Q 033947 83 VNKDTFWPIVKAA--GDKTVVLD 103 (108)
Q Consensus 83 ~dkddF~~~Lk~A--GDKLVVVD 103 (108)
.+.+||.++|++| .+++.|||
T Consensus 130 ~~~~el~~al~~a~~~~gp~vIe 152 (153)
T PF02775_consen 130 PDPEELEEALREALESGGPAVIE 152 (153)
T ss_dssp HSHHHHHHHHHHHHHSSSEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCcEEEE
Confidence 4559999999986 68888887
No 68
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=22.10 E-value=72 Score=28.49 Aligned_cols=28 Identities=32% Similarity=0.537 Sum_probs=19.7
Q ss_pred eeecChhhHHHHHHhcCCcEEEEEeeeeC
Q 033947 80 VTEVNKDTFWPIVKAAGDKTVVLDMYTQW 108 (108)
Q Consensus 80 V~e~dkddF~~~Lk~AGDKLVVVDF~AtW 108 (108)
|.-+--..|+.++.+ -+|=|.|-|||+|
T Consensus 368 VkvvVgknfd~iv~d-e~KdVLvEfyAPW 395 (493)
T KOG0190|consen 368 VKVVVGKNFDDIVLD-EGKDVLVEFYAPW 395 (493)
T ss_pred eEEEeecCHHHHhhc-cccceEEEEcCcc
Confidence 333334578888844 4567899999999
No 69
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=21.56 E-value=2.3e+02 Score=17.96 Aligned_cols=42 Identities=29% Similarity=0.293 Sum_probs=28.5
Q ss_pred CceeEEeeeceeeeeeeceeee-cChhhHHHHHHhcCCcEEEE
Q 033947 61 GGVFTVRSSLEIAGATVGEVTE-VNKDTFWPIVKAAGDKTVVL 102 (108)
Q Consensus 61 ~~~~~v~~s~~t~~~~vg~V~e-~dkddF~~~Lk~AGDKLVVV 102 (108)
.|...|..+++.....+-.=.. ++.+++.++++++|-+.+.+
T Consensus 28 ~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~ 70 (71)
T COG2608 28 DGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI 70 (71)
T ss_pred CCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence 4467788888763322222221 68899999999999987754
No 70
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=21.43 E-value=1.1e+02 Score=19.74 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=19.8
Q ss_pred ceeeecChhhHHHHHH----hcCCcEEEEEeee
Q 033947 78 GEVTEVNKDTFWPIVK----AAGDKTVVLDMYT 106 (108)
Q Consensus 78 g~V~e~dkddF~~~Lk----~AGDKLVVVDF~A 106 (108)
|.+...+-+.|+..+. +.+.+.||+||..
T Consensus 16 G~l~f~~~~~~~~~l~~~~~~~~~~~vilDls~ 48 (100)
T cd06844 16 GELDHHSVEQFKEELLHNITNVAGKTIVIDISA 48 (100)
T ss_pred EEecHhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 5555577777777653 2346899999964
No 71
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=21.40 E-value=76 Score=25.53 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=10.7
Q ss_pred CCcEEEEEee-eeC
Q 033947 96 GDKTVVLDMY-TQW 108 (108)
Q Consensus 96 GDKLVVVDF~-AtW 108 (108)
++|.||+.|| |+|
T Consensus 97 kgk~vVL~FyPa~f 110 (261)
T PTZ00137 97 KDSYGLLVFYPLDF 110 (261)
T ss_pred CCCeEEEEEECCCC
Confidence 6788999988 777
No 72
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=20.98 E-value=1.1e+02 Score=19.71 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=15.7
Q ss_pred ecChhhHHHHHHhcCCcEEEEEe
Q 033947 82 EVNKDTFWPIVKAAGDKTVVLDM 104 (108)
Q Consensus 82 e~dkddF~~~Lk~AGDKLVVVDF 104 (108)
..+.++|.+.++ .+...++||-
T Consensus 11 ~i~~~~l~~~~~-~~~~~~liDv 32 (109)
T cd01533 11 SVSADELAALQA-RGAPLVVLDG 32 (109)
T ss_pred cCCHHHHHHHHh-cCCCcEEEeC
Confidence 477888988884 4555788883
No 73
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=20.19 E-value=99 Score=26.14 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=22.2
Q ss_pred ceeee-cChhhHHHHHHhcCCcEEEEEe
Q 033947 78 GEVTE-VNKDTFWPIVKAAGDKTVVLDM 104 (108)
Q Consensus 78 g~V~e-~dkddF~~~Lk~AGDKLVVVDF 104 (108)
|+|-- .+-+.+-..|..-|.|.|+|||
T Consensus 12 GGVGKTTttAnig~aLA~~GkKv~liD~ 39 (272)
T COG2894 12 GGVGKTTTTANIGTALAQLGKKVVLIDF 39 (272)
T ss_pred CCcCccchhHHHHHHHHHcCCeEEEEec
Confidence 44444 6678888999999999999998
Done!