Query 033948
Match_columns 108
No_of_seqs 137 out of 408
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 08:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03650 MPC: Uncharacterised 100.0 7.8E-57 1.7E-61 325.5 5.5 101 3-103 5-105 (119)
2 KOG1589 Uncharacterized conser 100.0 8.8E-55 1.9E-59 313.0 4.9 100 2-101 8-107 (118)
3 KOG1590 Uncharacterized conser 100.0 5E-48 1.1E-52 282.1 4.5 99 4-102 11-112 (132)
4 PF03083 MtN3_slv: Sugar efflu 96.8 0.0003 6.5E-09 46.4 -0.1 57 37-95 28-84 (87)
5 KOG1623 Multitransmembrane pro 91.3 0.14 3.1E-06 41.2 2.2 82 13-96 121-210 (243)
6 PF14795 Leucyl-specific: Leuc 38.6 13 0.00028 24.1 0.4 7 16-22 50-56 (56)
7 KOG4550 Predicted membrane pro 35.4 34 0.00074 30.9 2.7 44 63-108 553-596 (606)
8 KOG1623 Multitransmembrane pro 34.0 37 0.0008 27.5 2.5 58 37-95 34-91 (243)
9 PF09323 DUF1980: Domain of un 31.4 86 0.0019 23.3 4.0 47 49-95 5-58 (182)
10 cd00928 Cyt_c_Oxidase_VIIa Cyt 28.0 25 0.00054 22.6 0.5 25 39-63 26-50 (55)
11 TIGR01100 V_ATP_synt_C vacuola 23.8 85 0.0018 22.5 2.6 43 25-67 19-70 (108)
12 KOG2495 NADH-dehydrogenase (ub 22.3 28 0.00061 31.1 -0.1 12 63-74 82-93 (491)
13 PF15048 OSTbeta: Organic solu 22.3 1.1E+02 0.0024 22.7 3.1 38 59-96 23-63 (125)
14 PRK05299 rpsB 30S ribosomal pr 21.7 36 0.00077 27.4 0.4 22 25-46 178-199 (258)
15 COG5557 Polysulphide reductase 21.3 61 0.0013 28.3 1.7 63 5-70 267-342 (401)
16 CHL00067 rps2 ribosomal protei 20.8 38 0.00082 26.6 0.3 33 14-46 162-203 (230)
17 TIGR01011 rpsB_bact ribosomal 20.1 41 0.00088 26.4 0.4 22 25-46 176-197 (225)
No 1
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=100.00 E-value=7.8e-57 Score=325.55 Aligned_cols=101 Identities=50% Similarity=0.952 Sum_probs=96.1
Q ss_pred hhhHhHcCCCCCCceeeccccccchhhhhhccCCCCCCcccccchhhHHHHhhhhhhhhheeeccchhhhhhhhhhhhhH
Q 033948 3 SVRAFWNSPVGPKTTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETV 82 (108)
Q Consensus 3 ~~~~~~~~paGpkt~hFWgP~~kWgl~iA~i~D~~kppe~IS~~mt~aL~~~g~i~~R~s~~I~P~Ny~L~ach~~~~~~ 82 (108)
.+|++||||+||+|||||||++|||||||||+|++||||+||++||+|||+||+||||||++|+||||+||+||++|+++
T Consensus 5 ~~~~~~~~~~gp~T~hFWaP~~kWgl~iA~i~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~ 84 (119)
T PF03650_consen 5 KFRRFWNSPAGPKTTHFWAPVAKWGLPIAGIADMKRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATT 84 (119)
T ss_pred HHHHHHcCccccceEEeehhheeheeeeeehhhcCCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccchhhhh
Q 033948 83 QLYHLSRWARSQGYLSEKKKD 103 (108)
Q Consensus 83 q~~Ql~R~~~~~~~~~~~~~~ 103 (108)
|+||++|+++|++..++++++
T Consensus 85 q~~Ql~R~~~y~~~~~~~~~~ 105 (119)
T PF03650_consen 85 QLYQLYRKLNYQYSQKKEAKQ 105 (119)
T ss_pred HHHHHHHHHHHHhhcCchhHH
Confidence 999999999999876544433
No 2
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.8e-55 Score=313.03 Aligned_cols=100 Identities=36% Similarity=0.729 Sum_probs=95.2
Q ss_pred hhhhHhHcCCCCCCceeeccccccchhhhhhccCCCCCCcccccchhhHHHHhhhhhhhhheeeccchhhhhhhhhhhhh
Q 033948 2 ASVRAFWNSPVGPKTTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNET 81 (108)
Q Consensus 2 ~~~~~~~~~paGpkt~hFWgP~~kWgl~iA~i~D~~kppe~IS~~mt~aL~~~g~i~~R~s~~I~P~Ny~L~ach~~~~~ 81 (108)
+.+|++||||+||||+|||+|++||||++|||+|++||||+||+.|+.||++||+||+|||++|+|+||+||+||+|+++
T Consensus 8 ~k~r~~WnhpaGPKTVhFWAPt~KWglv~AglaD~arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~ 87 (118)
T KOG1589|consen 8 AKLRPLWNHPAGPKTVHFWAPTFKWGLVIAGLADLARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAI 87 (118)
T ss_pred HHHHHHhcCCCCCcEEEEecchhhhhheeecHHhhcCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccchhh
Q 033948 82 VQLYHLSRWARSQGYLSEKK 101 (108)
Q Consensus 82 ~q~~Ql~R~~~~~~~~~~~~ 101 (108)
+|+|||.|+++|+..+...+
T Consensus 88 tg~~QL~Ri~~y~~~~~~~~ 107 (118)
T KOG1589|consen 88 TGIYQLTRIANYQQQQKALE 107 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987644433
No 3
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5e-48 Score=282.10 Aligned_cols=99 Identities=61% Similarity=1.023 Sum_probs=92.7
Q ss_pred hhHhHcCCCCCC---ceeeccccccchhhhhhccCCCCCCcccccchhhHHHHhhhhhhhhheeeccchhhhhhhhhhhh
Q 033948 4 VRAFWNSPVGPK---TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNE 80 (108)
Q Consensus 4 ~~~~~~~paGpk---t~hFWgP~~kWgl~iA~i~D~~kppe~IS~~mt~aL~~~g~i~~R~s~~I~P~Ny~L~ach~~~~ 80 (108)
+..+.+++.+++ +||||||++|||||||+|.||+|+||.|||+||+|||+||.+||||+|.|+||||+||+||++|+
T Consensus 11 ~~~~~~ske~r~Y~~sTHFWGPvaNwGlpiAal~DmkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N~ 90 (132)
T KOG1590|consen 11 FQDFLNSKEFRKYFMSTHFWGPVANWGLPIAALVDMKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATNE 90 (132)
T ss_pred HHHHhcChHHhhhhhhcccccchhhccchHHHHHhccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhH
Confidence 567889999997 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccccchhhh
Q 033948 81 TVQLYHLSRWARSQGYLSEKKK 102 (108)
Q Consensus 81 ~~q~~Ql~R~~~~~~~~~~~~~ 102 (108)
++|++|++|+++|++...++|+
T Consensus 91 taQ~~Qg~Rf~~~~Y~~~~~e~ 112 (132)
T KOG1590|consen 91 TAQLAQGSRFLNYNYGSTGEEK 112 (132)
T ss_pred HHHHHHHHHHHHHHhcccchhh
Confidence 9999999999999976444443
No 4
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=96.80 E-value=0.0003 Score=46.39 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=53.4
Q ss_pred CCCCcccccchhhHHHHhhhhhhhhheeeccchhhhhhhhhhhhhHHHHHHHHHHhhcc
Q 033948 37 KKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQLYHLSRWARSQG 95 (108)
Q Consensus 37 ~kppe~IS~~mt~aL~~~g~i~~R~s~~I~P~Ny~L~ach~~~~~~q~~Ql~R~~~~~~ 95 (108)
+|..|.+|..+..+..+-+.+|.+|.+.+ +|+.++.+|++-...+++|+.=++.|..
T Consensus 28 ~ks~~~~~~~~~~~~~~~~~~W~~YG~l~--~d~~i~~~N~~g~~~~~~~~~~~~~y~~ 84 (87)
T PF03083_consen 28 TKSTGSVSFPPFLAMFFNCVLWLIYGILI--NDWPIIVPNVFGLVLSIIYLVVYYIYPS 84 (87)
T ss_pred CCCCCccceehhHHHhhhccHhhhhhhhc--CCeeEEeeHHHHHHHHHHHHhheEEeCC
Confidence 79999999999999999999999999998 5999999999999999999998888765
No 5
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=91.33 E-value=0.14 Score=41.24 Aligned_cols=82 Identities=12% Similarity=0.188 Sum_probs=65.7
Q ss_pred CCCceeecc---ccccchhhhhhccCC-----CCCCcccccchhhHHHHhhhhhhhhheeeccchhhhhhhhhhhhhHHH
Q 033948 13 GPKTTHFWG---PVANWGFVVAGLVDL-----KKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQL 84 (108)
Q Consensus 13 Gpkt~hFWg---P~~kWgl~iA~i~D~-----~kppe~IS~~mt~aL~~~g~i~~R~s~~I~P~Ny~L~ach~~~~~~q~ 84 (108)
.++.+|+-| -++|=..-.|.++|| +|..|.+....+.|+.+.+..|.=|.+.+ +|..+..-|+.-...++
T Consensus 121 ~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli--~D~~IaipN~iG~~l~~ 198 (243)
T KOG1623|consen 121 PERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLI--KDFFIAIPNVLGFLLGL 198 (243)
T ss_pred cceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHh--cCeEEEcccHHHHHHHH
Confidence 344455544 455555556667776 58999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHhhccc
Q 033948 85 YHLSRWARSQGY 96 (108)
Q Consensus 85 ~Ql~R~~~~~~~ 96 (108)
.||.=+.+|...
T Consensus 199 ~QL~Ly~~y~~~ 210 (243)
T KOG1623|consen 199 IQLILYFKYPKT 210 (243)
T ss_pred HHHHHhhhcCCC
Confidence 999988666543
No 6
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=38.57 E-value=13 Score=24.15 Aligned_cols=7 Identities=71% Similarity=1.659 Sum_probs=6.3
Q ss_pred ceeeccc
Q 033948 16 TTHFWGP 22 (108)
Q Consensus 16 t~hFWgP 22 (108)
|+|||-|
T Consensus 50 ~~h~WKP 56 (56)
T PF14795_consen 50 TLHFWKP 56 (56)
T ss_dssp SEEEEEE
T ss_pred eEeecCC
Confidence 8999987
No 7
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=35.43 E-value=34 Score=30.88 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=25.2
Q ss_pred eeeccchhhhhhhhhhhhhHHHHHHHHHHhhccccchhhhhhhccC
Q 033948 63 WMVQPRNYLLLACHASNETVQLYHLSRWARSQGYLSEKKKDEASSQ 108 (108)
Q Consensus 63 ~~I~P~Ny~L~ach~~~~~~q~~Ql~R~~~~~~~~~~~~~~~~~~~ 108 (108)
+-|+|.|..|.++-+.-+++-.+-..=-+-|.+ +|||++.|++|
T Consensus 553 LyvTPS~lIl~s~~al~gvC~~il~ii~~Lh~~--EKkeD~~Er~Q 596 (606)
T KOG4550|consen 553 LYVTPSNLILLSAIALIGVCVFILAIIGILHWQ--EKKEDDRERRQ 596 (606)
T ss_pred EEEChHHHHHHHHHHHHHHHHHHHHHHhheehh--hhhhhhHHHHh
Confidence 678999998887644433333332222333333 67776666654
No 8
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=34.04 E-value=37 Score=27.52 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=46.3
Q ss_pred CCCCcccccchhhHHHHhhhhhhhhheeeccchhhhhhhhhhhhhHHHHHHHHHHhhcc
Q 033948 37 KKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQLYHLSRWARSQG 95 (108)
Q Consensus 37 ~kppe~IS~~mt~aL~~~g~i~~R~s~~I~P~Ny~L~ach~~~~~~q~~Ql~R~~~~~~ 95 (108)
+|..|.+|+-=-..=.+.+.+|+||.+...= .+++-.+|.+....+..=+.=++-|..
T Consensus 34 kkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~-d~llitIN~~G~~ie~~Yi~~f~~ya~ 91 (243)
T KOG1623|consen 34 KKSVEGFSSLPFLMGLLSCSLWLYYGLLKVH-DYLLITINGIGLVIETVYISIFLYYAP 91 (243)
T ss_pred ccCcCCCCCcCcHHHHHHHHHHHHhhhhccC-ceEEEEEehhcHHHHHHHHHHHheecC
Confidence 6888999876666556788999999965544 799999999999999887777766654
No 9
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=31.38 E-value=86 Score=23.29 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=34.0
Q ss_pred hHHHHhhhhhhh------hheeeccc-hhhhhhhhhhhhhHHHHHHHHHHhhcc
Q 033948 49 TAMCIYSGLFMR------FAWMVQPR-NYLLLACHASNETVQLYHLSRWARSQG 95 (108)
Q Consensus 49 ~aL~~~g~i~~R------~s~~I~P~-Ny~L~ach~~~~~~q~~Ql~R~~~~~~ 95 (108)
..|+++|.++++ +..-|.|| .+++..+=+......++|+.|..+-..
T Consensus 5 liL~~~~~l~~~l~~sG~i~~YI~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~ 58 (182)
T PF09323_consen 5 LILLGFGILLFYLILSGKILLYIHPRYIPLLYFAAILLLILAIVQLWRWFRPKR 58 (182)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456777777765 55678888 457777777788888888888777543
No 10
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=28.02 E-value=25 Score=22.62 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=21.4
Q ss_pred CCcccccchhhHHHHhhhhhhhhhe
Q 033948 39 PPEMISGNMTTAMCIYSGLFMRFAW 63 (108)
Q Consensus 39 ppe~IS~~mt~aL~~~g~i~~R~s~ 63 (108)
+.|.|-.+-|.+||+-|..++=|++
T Consensus 26 ~~D~~LYr~Tm~L~~vG~~~~~~~l 50 (55)
T cd00928 26 VVDRILYRLTMALTVVGTGYSLYLL 50 (55)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHH
Confidence 3488899999999999999987765
No 11
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=23.80 E-value=85 Score=22.47 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=26.6
Q ss_pred cchhhhhh--ccCC-CCCCc-----ccccchhhHHHHhhhhhhhh-heeecc
Q 033948 25 NWGFVVAG--LVDL-KKPPE-----MISGNMTTAMCIYSGLFMRF-AWMVQP 67 (108)
Q Consensus 25 kWgl~iA~--i~D~-~kppe-----~IS~~mt~aL~~~g~i~~R~-s~~I~P 67 (108)
-||..+|| ++-. -+.|| .|+.-|..++.+||+|-+=. ...+.|
T Consensus 19 A~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~ 70 (108)
T TIGR01100 19 AYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKP 70 (108)
T ss_pred HHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 47777887 3331 12277 45677888999999994432 233544
No 12
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=22.35 E-value=28 Score=31.06 Aligned_cols=12 Identities=50% Similarity=0.949 Sum_probs=10.4
Q ss_pred eeeccchhhhhh
Q 033948 63 WMVQPRNYLLLA 74 (108)
Q Consensus 63 ~~I~P~Ny~L~a 74 (108)
.+|.||||+||.
T Consensus 82 ~vVSPRnyFlFT 93 (491)
T KOG2495|consen 82 TVVSPRNYFLFT 93 (491)
T ss_pred EEeccccceEEe
Confidence 589999998886
No 13
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=22.25 E-value=1.1e+02 Score=22.70 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=31.9
Q ss_pred hhhheee---ccchhhhhhhhhhhhhHHHHHHHHHHhhccc
Q 033948 59 MRFAWMV---QPRNYLLLACHASNETVQLYHLSRWARSQGY 96 (108)
Q Consensus 59 ~R~s~~I---~P~Ny~L~ach~~~~~~q~~Ql~R~~~~~~~ 96 (108)
|+|.+.+ +|=||.+++--+.....++.-|.|-+..++.
T Consensus 23 mlW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRn 63 (125)
T PF15048_consen 23 MLWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQANRN 63 (125)
T ss_pred HHHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhccc
Confidence 5566665 6889999999999999999999998887765
No 14
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=21.66 E-value=36 Score=27.36 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.5
Q ss_pred cchhhhhhccCCCCCCcccccc
Q 033948 25 NWGFVVAGLVDLKKPPEMISGN 46 (108)
Q Consensus 25 kWgl~iA~i~D~~kppe~IS~~ 46 (108)
+=+||+.||.|.+-+|+.|+.+
T Consensus 178 kl~IPiIaivDTn~dp~~Idyp 199 (258)
T PRK05299 178 KLGIPVVAIVDTNCDPDGVDYP 199 (258)
T ss_pred HhCCCEEEEeeCCCCCccccee
Confidence 6689999999999999998754
No 15
>COG5557 Polysulphide reductase [Energy production and conversion]
Probab=21.26 E-value=61 Score=28.25 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=46.0
Q ss_pred hHhHcCCCCCCceeeccccccchhhhhhccC---------CCCCCcccccchhhHHHHhhhhhhhhheeec----cchh
Q 033948 5 RAFWNSPVGPKTTHFWGPVANWGFVVAGLVD---------LKKPPEMISGNMTTAMCIYSGLFMRFAWMVQ----PRNY 70 (108)
Q Consensus 5 ~~~~~~paGpkt~hFWgP~~kWgl~iA~i~D---------~~kppe~IS~~mt~aL~~~g~i~~R~s~~I~----P~Ny 70 (108)
+.-|.+--+|-+.|||. ++=|.++++|++= +.++-..| .+.+++.+.|..+-||-+.|. |.||
T Consensus 267 ~eala~vF~~~~g~Fls-v~Fwl~vl~g~a~pl~ll~~pk~~nd~r~l--~~a~~l~vf~~~~egwrl~i~gqv~~~n~ 342 (401)
T COG5557 267 REALALVFLPTAGDFLS-VMFWLEVLLGMAFPLVLLRVPKLRNDSRML--FLAALLAVFGVFCEGWRLTISGQVVAFNY 342 (401)
T ss_pred HHHHHHhhcccchhHHH-HHHHHHHHHhcccceEEEEccccccceeee--eHHHHHHHHHHHhhcEEEEeeeEEecccc
Confidence 34455556788999999 8889999997653 22332223 678899999999999888776 6665
No 16
>CHL00067 rps2 ribosomal protein S2
Probab=20.76 E-value=38 Score=26.63 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=25.2
Q ss_pred CCceeecccc---------ccchhhhhhccCCCCCCcccccc
Q 033948 14 PKTTHFWGPV---------ANWGFVVAGLVDLKKPPEMISGN 46 (108)
Q Consensus 14 pkt~hFWgP~---------~kWgl~iA~i~D~~kppe~IS~~ 46 (108)
|.-+..=.|. .+=+||+.||.|.+-+|+.|+.+
T Consensus 162 P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idyp 203 (230)
T CHL00067 162 PDIVIIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIP 203 (230)
T ss_pred CCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCcccccee
Confidence 4455555554 36789999999999999998754
No 17
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=20.07 E-value=41 Score=26.36 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.6
Q ss_pred cchhhhhhccCCCCCCcccccc
Q 033948 25 NWGFVVAGLVDLKKPPEMISGN 46 (108)
Q Consensus 25 kWgl~iA~i~D~~kppe~IS~~ 46 (108)
+=+||+-|+.|.+-+|+.|+.+
T Consensus 176 ~l~IP~I~ivDTn~~p~~idyp 197 (225)
T TIGR01011 176 KLGIPVVAIVDTNCDPDLVDYP 197 (225)
T ss_pred HcCCCEEEEeeCCCCCccccee
Confidence 6789999999999999998764
Done!