Query 033948
Match_columns 108
No_of_seqs 137 out of 408
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 13:32:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_B Ribosomal protein S2; s 24.2 21 0.00071 27.3 0.6 34 14-47 158-200 (231)
2 3r8n_B 30S ribosomal protein S 21.3 26 0.0009 26.5 0.7 24 24-47 169-192 (218)
3 2vqe_B 30S ribosomal protein S 20.5 27 0.00091 27.2 0.6 23 24-46 178-200 (256)
4 1vi6_A 30S ribosomal protein S 18.1 32 0.0011 26.0 0.5 24 23-46 134-157 (208)
5 2xzm_B RPS0E; ribosome, transl 16.1 39 0.0013 26.0 0.6 23 24-46 134-156 (241)
6 3bch_A 40S ribosomal protein S 14.2 46 0.0016 26.0 0.5 24 23-46 170-193 (253)
7 3n91_A Uncharacterized protein 13.5 23 0.0008 28.5 -1.4 24 62-85 159-182 (323)
8 3a5p_A Haemagglutinin I; lecti 13.4 47 0.0016 22.5 0.3 13 7-19 40-52 (104)
9 3j20_B 30S ribosomal protein S 13.0 52 0.0018 24.6 0.5 24 24-47 131-154 (202)
10 3u5c_A 40S ribosomal protein S 10.7 71 0.0024 24.8 0.6 23 24-46 137-159 (252)
No 1
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=24.21 E-value=21 Score=27.30 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=26.7
Q ss_pred CCceeeccc---------cccchhhhhhccCCCCCCcccccch
Q 033948 14 PKTTHFWGP---------VANWGFVVAGLVDLKKPPEMISGNM 47 (108)
Q Consensus 14 pkt~hFWgP---------~~kWgl~iA~i~D~~kppe~IS~~m 47 (108)
|.-+..=.| ..+=|||+.|+.|.+-||+.|+.+-
T Consensus 158 Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~I 200 (231)
T 3bbn_B 158 PDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISI 200 (231)
T ss_dssp CSEEEESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEEC
T ss_pred CCEEEEeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEEe
Confidence 445555555 4688999999999999999997653
No 2
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=21.31 E-value=26 Score=26.46 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.5
Q ss_pred ccchhhhhhccCCCCCCcccccch
Q 033948 24 ANWGFVVAGLVDLKKPPEMISGNM 47 (108)
Q Consensus 24 ~kWgl~iA~i~D~~kppe~IS~~m 47 (108)
.+=+||+.||.|.+-||+.|+.+-
T Consensus 169 ~~l~IP~IalvDTn~~p~~Vdy~I 192 (218)
T 3r8n_B 169 NNLGIPVFAIVDTNSDPDGVDFVI 192 (218)
T ss_dssp HHHTCCCEEECCSSSCCSSCSEEC
T ss_pred HHhCCCEEEEEeCcCCCcccceEe
Confidence 467899999999999999987653
No 3
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=20.52 E-value=27 Score=27.17 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.2
Q ss_pred ccchhhhhhccCCCCCCcccccc
Q 033948 24 ANWGFVVAGLVDLKKPPEMISGN 46 (108)
Q Consensus 24 ~kWgl~iA~i~D~~kppe~IS~~ 46 (108)
.+=|||+-||.|.+-||+.|+.+
T Consensus 178 ~~l~IPvIaivDTn~dp~~Vdyp 200 (256)
T 2vqe_B 178 RKLFIPVIALADTDSDPDLVDYI 200 (256)
T ss_dssp HHTTCCCEECCCTTSCGGGCSEE
T ss_pred HHcCCCEEEEecCCCCchhcceE
Confidence 46799999999999999998764
No 4
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=18.12 E-value=32 Score=25.98 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.6
Q ss_pred cccchhhhhhccCCCCCCcccccc
Q 033948 23 VANWGFVVAGLVDLKKPPEMISGN 46 (108)
Q Consensus 23 ~~kWgl~iA~i~D~~kppe~IS~~ 46 (108)
..|=+||+-|+.|.+-||+.|+.+
T Consensus 134 A~~l~IPvIalvDTn~~p~~Vd~~ 157 (208)
T 1vi6_A 134 ATAVGIPVVALCDSNNSSADVDLV 157 (208)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEeCCCCCccccCEE
Confidence 347899999999999999998654
No 5
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=16.09 E-value=39 Score=26.00 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.1
Q ss_pred ccchhhhhhccCCCCCCcccccc
Q 033948 24 ANWGFVVAGLVDLKKPPEMISGN 46 (108)
Q Consensus 24 ~kWgl~iA~i~D~~kppe~IS~~ 46 (108)
.+=+||+-||.|.+-||+.|+.+
T Consensus 134 ~~l~IPvIalvDTn~~p~~VDy~ 156 (241)
T 2xzm_B 134 SYVNIPVIALCDSDSPLAYVDVV 156 (241)
T ss_dssp TTTTCCEEECCCSSSCCTTCCEE
T ss_pred HHhCCCEEEEecCCCCcccccEE
Confidence 47899999999999999988654
No 6
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=14.18 E-value=46 Score=25.96 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=20.6
Q ss_pred cccchhhhhhccCCCCCCcccccc
Q 033948 23 VANWGFVVAGLVDLKKPPEMISGN 46 (108)
Q Consensus 23 ~~kWgl~iA~i~D~~kppe~IS~~ 46 (108)
..|=+||+-||.|.+-||+.|+.+
T Consensus 170 A~~lgIPvIalvDTn~dp~~VDy~ 193 (253)
T 3bch_A 170 ASYVNLPTIALCNTDSPLRYVDIA 193 (253)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEEcCCCCcccCceE
Confidence 347899999999999999988654
No 7
>3n91_A Uncharacterized protein; domain of unknown function (DUF1735), structural genomics, J center for structural genomics, JCSG; HET: 2PE; 2.40A {Bacteroides ovatus}
Probab=13.47 E-value=23 Score=28.52 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.3
Q ss_pred heeeccchhhhhhhhhhhhhHHHH
Q 033948 62 AWMVQPRNYLLLACHASNETVQLY 85 (108)
Q Consensus 62 s~~I~P~Ny~L~ach~~~~~~q~~ 85 (108)
.|.|+|++|.|+++...|.-.|.|
T Consensus 159 ~w~v~pkdyvLy~vky~N~y~G~Y 182 (323)
T 3n91_A 159 DWSILPQNFVLYAVKYVNPWHGEY 182 (323)
T ss_dssp GEEECCCSEEEEEEEEECTTCEEE
T ss_pred ccccCCCcEEEEEEEEeccCceEE
Confidence 389999999999999999877766
No 8
>3a5p_A Haemagglutinin I; lectin, sugar binding protein; 1.82A {Physarum polycephalum}
Probab=13.39 E-value=47 Score=22.52 Aligned_cols=13 Identities=46% Similarity=0.578 Sum_probs=9.6
Q ss_pred hHcCCCCCCceee
Q 033948 7 FWNSPVGPKTTHF 19 (108)
Q Consensus 7 ~~~~paGpkt~hF 19 (108)
+--+..||||+|=
T Consensus 40 itfseigpktvhq 52 (104)
T 3a5p_A 40 ITFSEIGPKTVHQ 52 (104)
T ss_dssp EEEECCSCCCSSS
T ss_pred eeehhcCCceeee
Confidence 3446789999884
No 9
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=13.03 E-value=52 Score=24.64 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=19.9
Q ss_pred ccchhhhhhccCCCCCCcccccch
Q 033948 24 ANWGFVVAGLVDLKKPPEMISGNM 47 (108)
Q Consensus 24 ~kWgl~iA~i~D~~kppe~IS~~m 47 (108)
.+=+||+-||.|.+-||+.|+..-
T Consensus 131 ~~l~IP~Ial~DTn~~p~~Vd~~I 154 (202)
T 3j20_B 131 VEIGIPIVALVDTENLLSYVDLAI 154 (202)
T ss_dssp HHHTCCEEEEECTTCCCTTCCEEE
T ss_pred HHcCCCEEEEEcCCCCccccCEEE
Confidence 356899999999999999887543
No 10
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=10.72 E-value=71 Score=24.84 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=19.7
Q ss_pred ccchhhhhhccCCCCCCcccccc
Q 033948 24 ANWGFVVAGLVDLKKPPEMISGN 46 (108)
Q Consensus 24 ~kWgl~iA~i~D~~kppe~IS~~ 46 (108)
.+=+||+-||.|.+-||+.|+..
T Consensus 137 ~~l~IP~Ial~DTn~~p~~VD~~ 159 (252)
T 3u5c_A 137 SYVNIPVIALTDLDSPSEFVDVA 159 (252)
T ss_dssp HTTTCCEEEEECTTCCCTTCSSE
T ss_pred HHcCCCEEEEEcCCCCcccCCEE
Confidence 36689999999999999988754
Done!