Query 033948
Match_columns 108
No_of_seqs 137 out of 408
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 13:32:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033948.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033948hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gy9b1 c.23.15.1 (B:8-225) Ri 22.5 10 0.00076 26.5 0.5 33 14-46 150-191 (218)
2 d2uubb1 c.23.15.1 (B:7-240) Ri 17.2 15 0.0011 26.1 0.3 22 25-46 173-194 (234)
3 d1v54j_ f.23.4.1 (J:) Mitochon 14.6 12 0.00086 22.0 -0.7 24 40-63 27-50 (58)
4 d2e74f1 f.23.25.1 (F:1-32) Pet 14.1 36 0.0026 17.5 1.3 17 47-63 6-22 (32)
5 d1vi6a_ c.23.15.1 (A:) Ribosom 9.6 37 0.0027 23.3 0.5 22 24-45 130-151 (193)
6 d2oqoa1 d.2.1.10 (A:57-243) Pe 6.3 64 0.0047 21.9 0.5 34 19-53 109-142 (187)
7 d2q7sa1 c.56.5.9 (A:10-289) N- 5.6 1.1E+02 0.0078 21.0 1.4 15 33-47 71-85 (280)
8 d1v95a_ c.51.1.1 (A:) Nuclear 5.5 60 0.0044 21.5 -0.1 39 35-75 39-77 (130)
9 d2i76a1 a.100.1.10 (A:155-257) 5.3 2.1E+02 0.015 17.3 2.6 23 70-92 4-26 (103)
10 d1uvqb2 d.19.1.1 (B:3-94) Clas 4.8 33 0.0024 21.4 -1.8 16 66-81 1-19 (92)
No 1
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}
Probab=22.52 E-value=10 Score=26.50 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=25.5
Q ss_pred CCceeecccc---------ccchhhhhhccCCCCCCcccccc
Q 033948 14 PKTTHFWGPV---------ANWGFVVAGLVDLKKPPEMISGN 46 (108)
Q Consensus 14 pkt~hFWgP~---------~kWgl~iA~i~D~~kppe~IS~~ 46 (108)
|.-++.-.|. .+=+||+-||.|.+-+|+.|+.+
T Consensus 150 Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~dp~~idyp 191 (218)
T d2gy9b1 150 PDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFV 191 (218)
T ss_dssp CCEEEESCTTTTHHHHHHHHHTTCCEEECCCSSSCGGGCTEE
T ss_pred CceeeeccccccHHHHHHHHHcCCCEEEEeeCCCCCccCcee
Confidence 5555555553 36789999999999999999765
No 2
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}
Probab=17.16 E-value=15 Score=26.07 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.3
Q ss_pred cchhhhhhccCCCCCCcccccc
Q 033948 25 NWGFVVAGLVDLKKPPEMISGN 46 (108)
Q Consensus 25 kWgl~iA~i~D~~kppe~IS~~ 46 (108)
+=+||+-||.|.+-+|+.|+.+
T Consensus 173 ~l~IPvIaivDTn~dp~~vdyp 194 (234)
T d2uubb1 173 KLFIPVIALADTDSDPDLVDYI 194 (234)
T ss_dssp HHTCCEEEEECTTSCGGGCSEE
T ss_pred hhCCCEEEEeecCCCccCCcEE
Confidence 6689999999999999998754
No 3
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.55 E-value=12 Score=22.01 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.3
Q ss_pred CcccccchhhHHHHhhhhhhhhhe
Q 033948 40 PEMISGNMTTAMCIYSGLFMRFAW 63 (108)
Q Consensus 40 pe~IS~~mt~aL~~~g~i~~R~s~ 63 (108)
+|.|-.+-|.+||+-|.+++=|++
T Consensus 27 ~D~~LYr~Tm~L~~~G~~~s~~~l 50 (58)
T d1v54j_ 27 TDNILYRVTMTLCLGGTLYSLYCL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899999999999887764
No 4
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.07 E-value=36 Score=17.52 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=13.8
Q ss_pred hhhHHHHhhhhhhhhhe
Q 033948 47 MTTAMCIYSGLFMRFAW 63 (108)
Q Consensus 47 mt~aL~~~g~i~~R~s~ 63 (108)
-.+||..+|+||.-|.+
T Consensus 6 l~aa~lsfglifvgwgl 22 (32)
T d2e74f1 6 LYAALLSFGLIFVGWGL 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhHH
Confidence 35789999999988764
No 5
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=9.59 E-value=37 Score=23.33 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.1
Q ss_pred ccchhhhhhccCCCCCCccccc
Q 033948 24 ANWGFVVAGLVDLKKPPEMISG 45 (108)
Q Consensus 24 ~kWgl~iA~i~D~~kppe~IS~ 45 (108)
.|=+||+-||.|.+-+|+.|+.
T Consensus 130 ~~l~IPvI~ivDTn~~p~~vdy 151 (193)
T d1vi6a_ 130 TAVGIPVVALCDSNNSSADVDL 151 (193)
T ss_dssp HHTTCCEEEEECTTCCCTTCSE
T ss_pred HHcCCCeeeEeccCCCCcccce
Confidence 4668999999999999999864
No 6
>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a {Aquifex aeolicus [TaxId: 63363]}
Probab=6.33 E-value=64 Score=21.91 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=27.7
Q ss_pred eccccccchhhhhhccCCCCCCcccccchhhHHHH
Q 033948 19 FWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCI 53 (108)
Q Consensus 19 FWgP~~kWgl~iA~i~D~~kppe~IS~~mt~aL~~ 53 (108)
+||+=. +|+--|+-.=+.|+|..++..|.+.|+.
T Consensus 109 ~~G~~~-yGi~aAa~~yFgk~~~~Lt~~EaA~La~ 142 (187)
T d2oqoa1 109 YLGSGA-YGVEAAAQVYFGKHVWELSLDEAALLAA 142 (187)
T ss_dssp BCSTTC-BSHHHHHHHHHSSCGGGCCHHHHHHHHH
T ss_pred cCCCch-hhHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 456553 6888888888999999999999987764
No 7
>d2q7sa1 c.56.5.9 (A:10-289) N-formylglutamate amidohydrolase {Ralstonia eutropha [TaxId: 106590]}
Probab=5.63 E-value=1.1e+02 Score=20.97 Aligned_cols=15 Identities=13% Similarity=0.126 Sum_probs=12.0
Q ss_pred ccCCCCCCcccccch
Q 033948 33 LVDLKKPPEMISGNM 47 (108)
Q Consensus 33 i~D~~kppe~IS~~m 47 (108)
+.|++|+|+.++..|
T Consensus 71 vIDlNR~~~d~d~~~ 85 (280)
T d2q7sa1 71 YIDPNRMLDDIDPAQ 85 (280)
T ss_dssp TCCTTSCTTCCCGGG
T ss_pred eeecccCcccccccc
Confidence 679999999876654
No 8
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.52 E-value=60 Score=21.55 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=23.0
Q ss_pred CCCCCCcccccchhhHHHHhhhhhhhhheeeccchhhhhhh
Q 033948 35 DLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLAC 75 (108)
Q Consensus 35 D~~kppe~IS~~mt~aL~~~g~i~~R~s~~I~P~Ny~L~ac 75 (108)
|+=-|.+.++..+. |.=-+-==+=||.+|+|.|..+=+|
T Consensus 39 d~lf~n~dv~l~~a--L~~vs~~G~~faIlVt~qn~~~~S~ 77 (130)
T d1v95a_ 39 DLIFLNTEVSLSQA--LEDVSRGGSPFAIVITQQHQIHRSC 77 (130)
T ss_dssp EEEECTTSSCHHHH--HHHHHHHTCSEEEEECHHHHHHTEE
T ss_pred EEEecCCcccHHHH--HHHHHhCCCceEEEEeccchhhcce
Confidence 34445555555443 3222222233899999999988776
No 9
>d2i76a1 a.100.1.10 (A:155-257) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}
Probab=5.31 E-value=2.1e+02 Score=17.33 Aligned_cols=23 Identities=43% Similarity=0.306 Sum_probs=15.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHh
Q 033948 70 YLLLACHASNETVQLYHLSRWAR 92 (108)
Q Consensus 70 y~L~ach~~~~~~q~~Ql~R~~~ 92 (108)
|-+.+|.++|..+.++.+...+-
T Consensus 4 YH~aAv~asNf~~~l~~~a~~l~ 26 (103)
T d2i76a1 4 YHLAAVIASNFPVALAYLSKRIY 26 (103)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 56677777777777766665443
No 10
>d1uvqb2 d.19.1.1 (B:3-94) Class II MHC beta chain, N-terminal domain {Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]}
Probab=4.79 E-value=33 Score=21.35 Aligned_cols=16 Identities=25% Similarity=0.646 Sum_probs=9.0
Q ss_pred ccchhhhh---hhhhhhhh
Q 033948 66 QPRNYLLL---ACHASNET 81 (108)
Q Consensus 66 ~P~Ny~L~---ach~~~~~ 81 (108)
+|.|++.- -||++|++
T Consensus 1 ~pe~f~~~~k~eC~f~Ngt 19 (92)
T d1uvqb2 1 SPEDFVFQFKGMCYFTNGT 19 (92)
T ss_dssp CCCCCEEEEEEEEEEETTT
T ss_pred ChhHhheeeeeEEEEecCC
Confidence 35555443 37887744
Done!