BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033949
         (107 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8NB14|UBP38_HUMAN Ubiquitin carboxyl-terminal hydrolase 38 OS=Homo sapiens GN=USP38
           PE=2 SV=2
          Length = 1042

 Score = 30.4 bits (67), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 23  RCINCGSTADLVEYEKVLKAFFVPVWKW-------PAKEPALFCNNCNLLFPSSLPPPPP 75
           RC+NC ST+  VE    L   F P           PA  P++       L  +S+P P  
Sbjct: 599 RCLNCRSTSQKVEAFTDLSLAFCPSSSLENMSVQDPASSPSIQDGG---LMQASVPGPSE 655

Query: 76  PPPLVSDVSKCRFCDRLV 93
            P + +  +    CD LV
Sbjct: 656 EPVVYNPTTAAFICDSLV 673


>sp|Q8K3G5|VRK3_MOUSE Inactive serine/threonine-protein kinase VRK3 OS=Mus musculus
           GN=Vrk3 PE=1 SV=2
          Length = 453

 Score = 30.4 bits (67), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 83  VSKCRFCDRLVEPDFSFCPYCGSAL 107
           +S C  C + V+  F FCPYCG AL
Sbjct: 2   ISFCPVCGKSVKVSFKFCPYCGKAL 26


>sp|Q8IV63|VRK3_HUMAN Inactive serine/threonine-protein kinase VRK3 OS=Homo sapiens
           GN=VRK3 PE=1 SV=2
          Length = 474

 Score = 28.9 bits (63), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 83  VSKCRFCDRLVEPDFSFCPYCGSAL 107
           +S C  C + ++  F FCPYCG++L
Sbjct: 2   ISFCPDCGKSIQAAFKFCPYCGNSL 26


>sp|Q9ZPX0|GAT20_ARATH GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2
           SV=2
          Length = 208

 Score = 28.9 bits (63), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 18/68 (26%)

Query: 4   FFVGGVNQQVSRVLKSGAG-----RCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALF 58
           F++ G N + S   K G       RC +C +T+              P+W+   K P   
Sbjct: 69  FYIHGGNAKTSSYKKGGVAHSLPRRCASCDTTS-------------TPLWRNGPKGPKSL 115

Query: 59  CNNCNLLF 66
           CN C + F
Sbjct: 116 CNACGIRF 123


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.144    0.502 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,608,692
Number of Sequences: 539616
Number of extensions: 1951019
Number of successful extensions: 32155
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 27572
Number of HSP's gapped (non-prelim): 3558
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)