Query 033949
Match_columns 107
No_of_seqs 145 out of 412
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 13:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jrp_A Putative cytoplasmic pr 98.1 8.2E-07 2.8E-11 54.7 1.6 37 55-105 17-59 (81)
2 2jrp_A Putative cytoplasmic pr 97.8 4.7E-06 1.6E-10 51.3 1.3 39 57-107 3-41 (81)
3 1twf_L ABC10-alpha, DNA-direct 97.1 0.00027 9.2E-09 42.3 2.6 24 83-106 28-54 (70)
4 3j21_g 50S ribosomal protein L 96.5 0.0014 4.9E-08 36.8 2.3 25 82-106 13-37 (51)
5 3h0g_L DNA-directed RNA polyme 96.5 0.0018 6.2E-08 37.9 2.7 25 83-107 21-48 (63)
6 2lcq_A Putative toxin VAPC6; P 96.3 0.0013 4.3E-08 44.6 1.7 24 83-106 132-157 (165)
7 3h0g_I DNA-directed RNA polyme 96.1 0.016 5.5E-07 37.2 6.1 16 55-70 25-40 (113)
8 2jne_A Hypothetical protein YF 96.1 0.00076 2.6E-08 42.7 -0.5 43 20-95 31-73 (101)
9 2jne_A Hypothetical protein YF 96.0 0.0011 3.8E-08 41.9 0.1 40 56-107 32-71 (101)
10 2apo_B Ribosome biogenesis pro 95.6 0.0071 2.4E-07 35.0 2.4 12 84-95 19-30 (60)
11 1pft_A TFIIB, PFTFIIBN; N-term 95.4 0.012 3.9E-07 32.3 2.8 32 21-69 5-37 (50)
12 2aus_D NOP10, ribosome biogene 95.3 0.0092 3.1E-07 34.5 2.2 9 85-93 19-27 (60)
13 3qt1_I DNA-directed RNA polyme 94.9 0.019 6.4E-07 38.1 2.9 16 56-71 46-61 (133)
14 1twf_L ABC10-alpha, DNA-direct 94.5 0.027 9.1E-07 33.5 2.8 10 55-64 44-53 (70)
15 2lcq_A Putative toxin VAPC6; P 94.3 0.023 7.9E-07 38.3 2.4 30 54-94 130-159 (165)
16 2kdx_A HYPA, hydrogenase/ureas 94.0 0.028 9.6E-07 36.1 2.2 23 84-106 74-99 (119)
17 2fiy_A Protein FDHE homolog; F 93.9 0.036 1.2E-06 41.4 2.9 24 56-92 208-231 (309)
18 3j20_Y 30S ribosomal protein S 93.8 0.018 6.1E-07 32.0 0.9 23 83-105 19-45 (50)
19 4ayb_P DNA-directed RNA polyme 93.8 0.039 1.3E-06 30.3 2.2 30 58-94 5-34 (48)
20 4ayb_P DNA-directed RNA polyme 93.6 0.063 2.2E-06 29.5 2.8 12 55-66 22-33 (48)
21 1pft_A TFIIB, PFTFIIBN; N-term 93.5 0.024 8.2E-07 31.0 1.1 32 55-95 4-36 (50)
22 3h0g_L DNA-directed RNA polyme 93.4 0.059 2E-06 31.4 2.7 13 55-67 37-49 (63)
23 1vq8_Z 50S ribosomal protein L 93.2 0.019 6.4E-07 35.2 0.4 33 19-68 25-57 (83)
24 2kdx_A HYPA, hydrogenase/ureas 92.6 0.065 2.2E-06 34.4 2.3 9 21-29 73-81 (119)
25 1vq8_Z 50S ribosomal protein L 92.6 0.033 1.1E-06 34.1 0.8 23 83-105 27-53 (83)
26 3a43_A HYPD, hydrogenase nicke 92.4 0.05 1.7E-06 36.1 1.6 15 55-69 69-83 (139)
27 2k4x_A 30S ribosomal protein S 92.3 0.11 3.7E-06 29.3 2.7 23 83-105 18-44 (55)
28 3a43_A HYPD, hydrogenase nicke 92.3 0.05 1.7E-06 36.1 1.5 25 82-106 69-116 (139)
29 2ayj_A 50S ribosomal protein L 92.3 0.24 8.1E-06 28.1 4.1 25 82-106 18-42 (56)
30 2ct7_A Ring finger protein 31; 92.2 0.14 4.8E-06 31.0 3.4 6 24-29 28-33 (86)
31 1qxf_A GR2, 30S ribosomal prot 91.9 0.098 3.4E-06 30.7 2.2 31 20-67 6-37 (66)
32 3qt1_I DNA-directed RNA polyme 91.8 0.2 6.9E-06 33.0 4.0 35 55-94 23-57 (133)
33 2apo_B Ribosome biogenesis pro 91.5 0.16 5.5E-06 29.2 2.9 14 57-70 19-32 (60)
34 2con_A RUH-035 protein, NIN on 91.1 0.13 4.6E-06 31.1 2.4 23 84-106 16-39 (79)
35 3h0g_I DNA-directed RNA polyme 90.8 0.21 7.1E-06 31.9 3.2 33 56-93 4-36 (113)
36 2zjr_Z 50S ribosomal protein L 90.7 0.11 3.7E-06 29.8 1.6 22 83-105 30-51 (60)
37 3j20_W 30S ribosomal protein S 90.5 0.16 5.6E-06 29.5 2.2 31 20-67 14-45 (63)
38 3irb_A Uncharacterized protein 90.3 0.086 2.9E-06 35.1 1.1 23 83-105 47-69 (145)
39 1dl6_A Transcription factor II 90.2 0.16 5.6E-06 28.7 2.1 29 23-68 13-42 (58)
40 3v2d_5 50S ribosomal protein L 90.0 0.14 4.9E-06 29.3 1.7 22 83-105 30-51 (60)
41 2xzm_6 RPS27E; ribosome, trans 88.5 0.27 9.4E-06 29.8 2.3 31 20-67 31-62 (81)
42 6rxn_A Rubredoxin; electron tr 88.4 0.31 1E-05 26.5 2.2 36 56-92 4-39 (46)
43 1gh9_A 8.3 kDa protein (gene M 88.4 0.1 3.4E-06 31.0 0.3 17 55-72 20-36 (71)
44 3pwf_A Rubrerythrin; non heme 88.4 0.33 1.1E-05 33.1 2.9 13 55-67 137-149 (170)
45 1wd2_A Ariadne-1 protein homol 88.0 0.94 3.2E-05 25.6 4.2 14 55-68 5-18 (60)
46 2k2d_A Ring finger and CHY zin 87.9 0.2 6.7E-06 30.2 1.3 23 83-105 37-63 (79)
47 3u5c_b RP61, YS20, 40S ribosom 87.7 0.34 1.2E-05 29.5 2.3 33 20-68 33-65 (82)
48 1wii_A Hypothetical UPF0222 pr 87.4 0.23 7.7E-06 30.5 1.4 35 19-68 21-59 (85)
49 4esj_A Type-2 restriction enzy 87.3 0.19 6.7E-06 36.5 1.3 37 20-70 33-70 (257)
50 2gnr_A Conserved hypothetical 87.3 0.19 6.4E-06 33.5 1.1 23 83-105 47-69 (145)
51 3iz6_X 40S ribosomal protein S 87.1 0.45 1.5E-05 29.2 2.7 31 21-68 36-67 (86)
52 3pwf_A Rubrerythrin; non heme 86.6 0.31 1.1E-05 33.2 2.0 23 83-105 138-161 (170)
53 1twf_I B12.6, DNA-directed RNA 86.3 0.17 5.8E-06 32.7 0.4 36 22-70 5-40 (122)
54 2pk7_A Uncharacterized protein 86.2 0.18 6E-06 29.7 0.4 33 21-70 8-40 (69)
55 2fiy_A Protein FDHE homolog; F 86.0 0.17 5.9E-06 37.8 0.4 24 83-106 208-231 (309)
56 2gmg_A Hypothetical protein PF 85.6 0.52 1.8E-05 30.0 2.4 12 84-95 85-96 (105)
57 2js4_A UPF0434 protein BB2007; 85.2 0.15 5.3E-06 30.1 -0.2 33 21-70 8-40 (70)
58 2hf1_A Tetraacyldisaccharide-1 85.2 0.16 5.4E-06 29.8 -0.1 32 22-70 9-40 (68)
59 1k81_A EIF-2-beta, probable tr 85.0 0.29 1E-05 25.1 0.9 30 22-66 1-31 (36)
60 2jr6_A UPF0434 protein NMA0874 84.9 0.16 5.5E-06 29.8 -0.2 33 21-70 8-40 (68)
61 2gmg_A Hypothetical protein PF 84.4 0.85 2.9E-05 29.0 3.0 24 83-106 67-93 (105)
62 2kn9_A Rubredoxin; metalloprot 84.4 0.47 1.6E-05 28.8 1.7 38 55-92 26-69 (81)
63 1e8j_A Rubredoxin; iron-sulfur 84.2 0.77 2.6E-05 25.4 2.5 37 56-92 3-45 (52)
64 4rxn_A Rubredoxin; electron tr 84.1 0.68 2.3E-05 25.9 2.2 37 56-92 3-45 (54)
65 2l7x_A Envelope glycoprotein; 83.9 0.44 1.5E-05 28.2 1.4 12 96-107 29-40 (77)
66 1dx8_A Rubredoxin; electron tr 83.9 0.48 1.7E-05 27.9 1.6 38 55-92 6-49 (70)
67 1yuz_A Nigerythrin; rubrythrin 83.6 0.53 1.8E-05 32.9 2.0 11 56-66 171-181 (202)
68 1x4u_A Zinc finger, FYVE domai 83.6 1.1 3.9E-05 26.7 3.3 11 56-66 30-40 (84)
69 1ryq_A DNA-directed RNA polyme 83.5 0.66 2.3E-05 27.3 2.1 10 56-65 11-20 (69)
70 1lko_A Rubrerythrin all-iron(I 83.5 0.4 1.4E-05 33.1 1.3 11 56-66 155-165 (191)
71 2yw8_A RUN and FYVE domain-con 83.4 0.85 2.9E-05 27.2 2.6 11 56-66 35-45 (82)
72 4esj_A Type-2 restriction enzy 83.0 0.44 1.5E-05 34.6 1.4 10 84-93 57-66 (257)
73 1z2q_A LM5-1; membrane protein 82.8 1.2 4.2E-05 26.6 3.2 11 56-66 37-47 (84)
74 2v3b_B Rubredoxin 2, rubredoxi 82.6 0.79 2.7E-05 25.6 2.1 37 56-92 3-45 (55)
75 1nj3_A NPL4; NZF domain, rubre 82.6 1.2 4.1E-05 21.6 2.6 24 84-107 7-30 (31)
76 1y02_A CARP2, FYVE-ring finger 82.4 0.52 1.8E-05 30.5 1.5 13 56-68 19-31 (120)
77 2lk0_A RNA-binding protein 5; 82.0 0.86 3E-05 22.6 1.9 11 55-65 4-14 (32)
78 2jny_A Uncharacterized BCR; st 81.7 0.27 9.2E-06 28.8 -0.1 33 21-70 10-42 (67)
79 2akl_A PHNA-like protein PA012 80.3 0.77 2.6E-05 30.4 1.7 14 54-67 42-55 (138)
80 1weo_A Cellulose synthase, cat 80.2 2.3 7.8E-05 26.3 3.7 10 56-65 35-44 (93)
81 3nw0_A Non-structural maintena 80.2 1.3 4.6E-05 31.5 3.1 12 55-66 192-203 (238)
82 1joc_A EEA1, early endosomal a 80.2 1.1 3.7E-05 29.0 2.4 11 56-66 69-79 (125)
83 2ecy_A TNF receptor-associated 79.6 1.1 3.9E-05 24.8 2.1 11 20-30 14-24 (66)
84 2ehe_A Four and A half LIM dom 79.4 4.7 0.00016 23.1 4.9 41 55-95 14-55 (82)
85 3p8b_A DNA-directed RNA polyme 79.2 1.1 3.7E-05 27.2 2.0 11 56-66 23-33 (81)
86 1qyp_A RNA polymerase II; tran 78.8 1.5 5E-05 24.3 2.4 9 21-29 15-23 (57)
87 3jyw_9 60S ribosomal protein L 78.4 1.6 5.4E-05 25.8 2.5 31 20-68 25-56 (72)
88 1lko_A Rubrerythrin all-iron(I 78.1 0.4 1.4E-05 33.1 -0.2 8 22-29 156-163 (191)
89 1iym_A EL5; ring-H2 finger, ub 78.1 2.1 7.1E-05 22.6 2.8 20 87-106 33-52 (55)
90 3ga8_A HTH-type transcriptiona 77.9 0.54 1.9E-05 27.7 0.4 13 83-95 36-48 (78)
91 1yk4_A Rubredoxin, RD; electro 76.6 1.4 4.8E-05 24.3 1.8 37 56-92 2-44 (52)
92 2k1p_A Zinc finger RAN-binding 76.6 1.9 6.3E-05 21.5 2.1 11 55-65 5-15 (33)
93 2dkt_A Ring finger and CHY zin 76.6 2.7 9.1E-05 28.0 3.5 9 58-66 73-81 (143)
94 3u6p_A Formamidopyrimidine-DNA 76.4 0.6 2.1E-05 34.0 0.3 21 84-104 246-272 (273)
95 1yuz_A Nigerythrin; rubrythrin 75.8 1.1 3.9E-05 31.2 1.6 23 83-105 171-194 (202)
96 1k82_A Formamidopyrimidine-DNA 75.7 0.65 2.2E-05 33.7 0.3 21 84-104 241-267 (268)
97 3t7l_A Zinc finger FYVE domain 75.6 1.6 5.6E-05 26.4 2.1 11 56-66 36-46 (90)
98 1ee8_A MUTM (FPG) protein; bet 75.5 0.66 2.2E-05 33.7 0.3 22 84-105 236-263 (266)
99 1k3x_A Endonuclease VIII; hydr 75.5 0.66 2.2E-05 33.6 0.3 21 84-104 235-261 (262)
100 3cc2_Z 50S ribosomal protein L 75.4 0.69 2.3E-05 29.9 0.4 31 20-68 59-90 (116)
101 1tfi_A Transcriptional elongat 75.3 3 0.0001 22.7 3.0 10 20-29 8-17 (50)
102 2l8e_A Polyhomeotic-like prote 75.0 1.1 3.8E-05 24.5 1.1 19 83-101 18-41 (49)
103 1dxg_A Desulforedoxin; non-hem 74.4 1.7 5.7E-05 22.0 1.6 12 20-31 5-16 (36)
104 2ysl_A Tripartite motif-contai 73.8 1.1 3.9E-05 25.1 1.0 11 20-30 19-29 (73)
105 2xzf_A Formamidopyrimidine-DNA 73.4 0.94 3.2E-05 32.9 0.7 22 84-105 243-270 (271)
106 3k7a_M Transcription initiatio 73.1 2.5 8.7E-05 31.5 3.0 33 21-68 21-54 (345)
107 3k7a_M Transcription initiatio 73.0 1.8 6.3E-05 32.2 2.2 31 56-95 21-54 (345)
108 3ir9_A Peptide chain release f 71.9 1.6 5.5E-05 29.5 1.6 9 56-64 78-86 (166)
109 3mkr_B Coatomer subunit alpha; 71.8 1.8 6.2E-05 32.5 1.9 18 52-69 274-291 (320)
110 3lpe_B DNA-directed RNA polyme 71.6 2.2 7.6E-05 24.2 1.9 9 85-93 15-23 (59)
111 3na7_A HP0958; flagellar bioge 71.6 1.4 4.7E-05 31.5 1.2 13 83-95 222-234 (256)
112 2jmo_A Parkin; IBR, E3 ligase, 71.5 3.8 0.00013 24.2 3.0 6 99-104 60-65 (80)
113 2djb_A Polycomb group ring fin 71.3 0.8 2.7E-05 26.0 -0.1 12 84-95 51-62 (72)
114 2egp_A Tripartite motif-contai 70.7 2.4 8.1E-05 24.1 2.0 13 83-95 53-65 (79)
115 3j21_e 50S ribosomal protein L 70.6 0.99 3.4E-05 26.0 0.2 24 20-64 16-40 (62)
116 1vk6_A NADH pyrophosphatase; 1 70.0 1.5 5E-05 31.7 1.1 23 83-105 107-133 (269)
117 4g9i_A Hydrogenase maturation 69.8 1.2 4E-05 37.1 0.6 74 17-106 102-187 (772)
118 1h7b_A Anaerobic ribonucleotid 69.8 0.97 3.3E-05 36.6 0.1 11 55-65 539-549 (605)
119 1ffk_W Ribosomal protein L37AE 69.6 0.99 3.4E-05 26.8 0.1 32 19-68 25-57 (73)
120 2d74_B Translation initiation 68.8 2.8 9.7E-05 28.0 2.2 18 53-70 122-139 (148)
121 4hc9_A Trans-acting T-cell-spe 68.4 0.26 8.9E-06 31.7 -2.9 70 21-104 5-87 (115)
122 2zkr_2 60S ribosomal protein L 67.9 2.5 8.6E-05 26.4 1.7 25 20-65 15-40 (97)
123 1vq8_1 50S ribosomal protein L 67.7 2 6.9E-05 24.3 1.1 24 20-64 16-40 (57)
124 2ckl_A Polycomb group ring fin 67.2 0.99 3.4E-05 27.7 -0.3 11 20-30 14-24 (108)
125 3vth_A Hydrogenase maturation 66.9 1.2 4E-05 37.1 -0.0 72 18-106 108-192 (761)
126 2y43_A E3 ubiquitin-protein li 66.7 1.6 5.6E-05 26.2 0.7 10 21-30 22-31 (99)
127 1wig_A KIAA1808 protein; LIM d 66.7 3 0.0001 23.7 1.8 7 23-29 7-13 (73)
128 2ctu_A Zinc finger protein 483 66.2 2.6 8.9E-05 22.8 1.4 38 19-70 16-53 (73)
129 1wfk_A Zinc finger, FYVE domai 65.8 5.3 0.00018 24.1 2.9 12 55-66 24-35 (88)
130 3ttc_A HYPF, transcriptional r 65.3 1.1 3.8E-05 36.7 -0.4 73 17-106 13-98 (657)
131 2cup_A Skeletal muscle LIM-pro 64.9 5 0.00017 23.9 2.7 64 20-96 4-79 (101)
132 3m7n_A Putative uncharacterize 64.9 2.4 8.2E-05 28.8 1.3 23 83-105 140-164 (179)
133 1x4l_A Skeletal muscle LIM-pro 64.8 2 6.8E-05 24.2 0.8 9 85-93 37-45 (72)
134 2ecv_A Tripartite motif-contai 64.7 1.8 6.2E-05 24.7 0.6 12 84-95 60-71 (85)
135 3mv2_A Coatomer subunit alpha; 64.3 1.6 5.4E-05 32.9 0.3 17 53-69 284-300 (325)
136 3iz5_m 60S ribosomal protein L 64.2 1.9 6.6E-05 26.7 0.6 31 20-68 35-66 (92)
137 1t1h_A Gspef-atpub14, armadill 63.8 1.1 3.6E-05 25.7 -0.6 12 84-95 44-55 (78)
138 3eqt_A ATP-dependent RNA helic 63.4 4.6 0.00016 26.9 2.4 30 19-51 67-96 (145)
139 2ct0_A Non-SMC element 1 homol 62.6 9.8 0.00033 22.2 3.5 37 55-95 27-64 (74)
140 1nee_A EIF-2-beta, probable tr 62.5 3.1 0.00011 27.5 1.4 32 22-68 103-135 (138)
141 1vfy_A Phosphatidylinositol-3- 62.5 4.9 0.00017 23.2 2.2 11 56-66 27-37 (73)
142 2c6a_A Ubiquitin-protein ligas 62.3 4.9 0.00017 21.7 1.9 21 83-103 13-33 (46)
143 1dvp_A HRS, hepatocyte growth 62.1 5.9 0.0002 27.5 2.9 12 57-68 162-173 (220)
144 2ecm_A Ring finger and CHY zin 62.0 2 7E-05 22.6 0.4 11 56-66 5-15 (55)
145 4bbr_M Transcription initiatio 62.0 2.3 8E-05 31.8 0.9 13 83-95 42-54 (345)
146 3f2b_A DNA-directed DNA polyme 61.5 3.5 0.00012 35.5 1.9 10 97-106 527-536 (1041)
147 1lv3_A Hypothetical protein YA 61.1 3.7 0.00013 24.0 1.4 12 83-94 9-20 (68)
148 3po3_S Transcription elongatio 61.1 6.7 0.00023 26.7 3.0 10 83-92 165-174 (178)
149 1x68_A FHL5 protein; four-and- 61.1 5.2 0.00018 22.7 2.1 12 56-67 35-46 (76)
150 2d9g_A YY1-associated factor 2 61.0 6.7 0.00023 21.5 2.5 23 84-106 12-34 (53)
151 2jz8_A Uncharacterized protein 60.8 3.5 0.00012 25.2 1.4 17 54-70 46-62 (87)
152 3izc_m 60S ribosomal protein R 60.5 2.2 7.5E-05 26.4 0.4 31 20-68 35-66 (92)
153 1g25_A CDK-activating kinase a 60.1 1.7 5.7E-05 24.0 -0.2 9 98-106 44-52 (65)
154 1s24_A Rubredoxin 2; electron 59.4 4.8 0.00016 24.6 1.8 38 55-92 34-77 (87)
155 1m2k_A Silent information regu 59.2 2.8 9.7E-05 29.8 0.9 9 21-29 121-129 (249)
156 1x6a_A LIMK-2, LIM domain kina 58.8 22 0.00074 20.1 4.7 39 55-95 14-53 (81)
157 3cng_A Nudix hydrolase; struct 58.8 3.6 0.00012 27.4 1.3 9 58-66 5-13 (189)
158 3j21_i 50S ribosomal protein L 58.5 2.6 8.9E-05 25.6 0.5 31 20-68 34-65 (83)
159 3cw2_K Translation initiation 58.5 7.2 0.00024 25.7 2.7 9 84-92 125-133 (139)
160 3k1f_M Transcription initiatio 58.3 2.8 9.5E-05 29.2 0.6 13 83-95 42-54 (197)
161 3a9j_C Mitogen-activated prote 58.0 7.3 0.00025 19.1 2.1 23 84-106 9-31 (34)
162 2qkd_A Zinc finger protein ZPR 57.8 2.1 7.2E-05 33.1 -0.0 11 56-66 41-51 (404)
163 3zyq_A Hepatocyte growth facto 57.8 7.1 0.00024 27.3 2.7 11 56-66 180-190 (226)
164 3u50_C Telomerase-associated p 56.9 6.6 0.00023 26.7 2.4 28 55-92 41-68 (172)
165 2f9y_B Acetyl-coenzyme A carbo 56.8 5.2 0.00018 29.5 2.0 24 83-106 24-52 (304)
166 3lrq_A E3 ubiquitin-protein li 56.2 1.8 6.3E-05 26.2 -0.5 10 21-30 22-31 (100)
167 2kpi_A Uncharacterized protein 56.0 2 6.9E-05 24.0 -0.3 31 21-70 10-42 (56)
168 2cr8_A MDM4 protein; ZF-ranbp 55.9 7.5 0.00026 21.5 2.0 11 55-65 10-20 (53)
169 1x63_A Skeletal muscle LIM-pro 55.7 22 0.00074 20.1 4.3 41 55-95 14-55 (82)
170 3axs_A Probable N(2),N(2)-dime 55.5 5.2 0.00018 30.5 1.8 23 84-106 245-272 (392)
171 2csy_A Zinc finger protein 183 55.5 1.5 5.3E-05 25.3 -0.9 11 20-30 14-24 (81)
172 4a17_Y RPL37A, 60S ribosomal p 55.4 3.5 0.00012 26.0 0.7 31 20-68 35-66 (103)
173 1l8d_A DNA double-strand break 55.1 2.5 8.6E-05 26.2 -0.0 8 99-106 49-56 (112)
174 2jrr_A Uncharacterized protein 55.1 4.9 0.00017 23.4 1.3 10 20-29 39-48 (67)
175 2ecw_A Tripartite motif-contai 55.0 2.6 8.7E-05 24.1 0.0 12 84-95 60-71 (85)
176 2ctt_A DNAJ homolog subfamily 54.7 7.5 0.00026 23.7 2.2 15 15-29 22-36 (104)
177 3u5e_m 60S ribosomal protein L 54.6 7.9 0.00027 24.5 2.3 24 82-105 92-117 (128)
178 2kq9_A DNAK suppressor protein 54.0 0.9 3.1E-05 28.8 -2.3 23 83-105 81-110 (112)
179 2egq_A FHL1 protein; LIM domai 53.9 17 0.00059 20.3 3.6 41 55-95 14-58 (77)
180 2yur_A Retinoblastoma-binding 53.6 3.7 0.00013 23.3 0.6 11 20-30 14-24 (74)
181 2jvm_A Uncharacterized protein 53.5 7.4 0.00025 23.4 1.9 21 48-68 45-65 (80)
182 2ckl_B Ubiquitin ligase protei 53.5 2.3 7.8E-05 28.0 -0.4 10 84-93 91-100 (165)
183 3gj3_B Nuclear pore complex pr 53.2 9.9 0.00034 18.9 2.1 23 84-106 8-30 (33)
184 3bvo_A CO-chaperone protein HS 53.0 10 0.00035 26.3 2.9 33 20-70 9-41 (207)
185 1ltl_A DNA replication initiat 52.6 4.8 0.00016 29.0 1.2 24 83-106 134-165 (279)
186 1jm7_B BARD1, BRCA1-associated 51.7 11 0.00037 23.2 2.6 9 21-29 22-30 (117)
187 3r8s_0 50S ribosomal protein L 51.7 5.7 0.0002 22.1 1.1 9 84-92 28-36 (56)
188 4a18_A RPL37, ribosomal protei 51.3 4.6 0.00016 25.0 0.7 25 20-65 15-40 (94)
189 1chc_A Equine herpes virus-1 r 51.2 2.9 9.8E-05 23.1 -0.2 10 85-94 42-51 (68)
190 4ap4_A E3 ubiquitin ligase RNF 51.0 0.81 2.8E-05 28.5 -2.9 14 54-67 70-83 (133)
191 2g2k_A EIF-5, eukaryotic trans 50.7 6.7 0.00023 26.8 1.6 38 22-71 97-134 (170)
192 2l3k_A Rhombotin-2, linker, LI 50.6 29 0.00099 21.4 4.6 10 84-93 37-46 (123)
193 3mhs_C SAGA-associated factor 50.6 6.9 0.00024 24.5 1.5 13 17-29 66-78 (99)
194 2f9i_B Acetyl-coenzyme A carbo 50.1 5.9 0.0002 28.9 1.3 23 83-105 30-57 (285)
195 3iz5_l 60S ribosomal protein L 50.1 5 0.00017 24.8 0.8 25 20-65 15-40 (94)
196 1h7b_A Anaerobic ribonucleotid 50.1 4.5 0.00015 32.7 0.7 9 57-65 559-567 (605)
197 2dmd_A Zinc finger protein 64, 50.1 2.4 8.2E-05 24.4 -0.7 12 56-67 36-47 (96)
198 1jm7_A BRCA1, breast cancer ty 50.0 7 0.00024 23.5 1.5 12 84-95 59-70 (112)
199 3u31_A SIR2A, transcriptional 49.6 4.4 0.00015 29.7 0.5 11 84-95 183-193 (290)
200 3mpx_A FYVE, rhogef and PH dom 49.4 3.5 0.00012 31.0 0.0 12 56-67 375-386 (434)
201 1nlt_A Protein YDJ1, mitochond 49.3 18 0.00063 25.5 3.8 15 15-29 32-46 (248)
202 1q1a_A HST2 protein; ternary c 49.2 0.75 2.6E-05 33.6 -3.7 12 84-95 164-175 (289)
203 2epq_A POZ-, at HOOK-, and zin 48.7 11 0.00039 18.2 2.0 12 56-67 10-21 (45)
204 1bor_A Transcription factor PM 48.6 29 0.00098 18.3 3.8 10 85-94 39-48 (56)
205 3ztg_A E3 ubiquitin-protein li 48.6 2.1 7.3E-05 25.2 -1.1 10 20-29 12-21 (92)
206 2d8t_A Dactylidin, ring finger 48.3 4.9 0.00017 22.4 0.5 10 20-29 14-23 (71)
207 3gj8_B Nuclear pore complex pr 48.1 11 0.00038 22.8 2.1 24 83-106 65-88 (92)
208 2e9h_A EIF-5, eukaryotic trans 47.8 6.1 0.00021 26.6 1.0 36 22-70 104-140 (157)
209 3fac_A Putative uncharacterize 47.7 3.3 0.00011 25.9 -0.3 7 85-91 69-75 (118)
210 1q14_A HST2 protein; histone d 47.7 1.5 5.1E-05 33.3 -2.3 12 84-95 172-183 (361)
211 1exk_A DNAJ protein; extended 47.3 20 0.0007 20.3 3.2 15 15-29 5-19 (79)
212 2kgo_A Uncharacterized protein 47.2 3.5 0.00012 26.2 -0.3 21 83-103 56-83 (108)
213 2ko5_A Ring finger protein Z; 46.9 2 7E-05 26.8 -1.4 26 82-107 46-71 (99)
214 1wyh_A SLIM 2, skeletal muscle 46.7 21 0.00071 19.6 3.1 11 84-94 34-44 (72)
215 2cuq_A Four and A half LIM dom 46.6 26 0.0009 19.6 3.6 39 55-95 14-53 (80)
216 3l11_A E3 ubiquitin-protein li 45.8 9.6 0.00033 23.3 1.6 9 21-29 15-23 (115)
217 3gj5_B Nuclear pore complex pr 45.8 15 0.00053 18.3 2.1 21 85-105 9-29 (34)
218 2k0a_A PRE-mRNA-splicing facto 45.6 2.1 7.2E-05 27.1 -1.5 21 83-103 57-78 (109)
219 2crc_A Ubiquitin conjugating e 45.2 17 0.00056 19.9 2.4 11 56-66 10-20 (52)
220 1vd4_A Transcription initiatio 45.0 10 0.00035 20.2 1.5 38 56-95 14-51 (62)
221 2yt9_A Zinc finger-containing 44.9 3.6 0.00012 23.5 -0.5 12 56-67 35-46 (95)
222 1nui_A DNA primase/helicase; z 44.8 11 0.00038 26.4 2.0 31 20-66 13-43 (255)
223 2ect_A Ring finger protein 126 44.5 13 0.00046 20.8 2.1 12 84-95 53-64 (78)
224 2kwq_A Protein MCM10 homolog; 44.4 16 0.00056 22.4 2.5 8 85-92 67-74 (92)
225 2dmi_A Teashirt homolog 3; zin 44.1 38 0.0013 19.7 4.2 40 55-94 49-91 (115)
226 2ecj_A Tripartite motif-contai 44.0 12 0.00041 19.5 1.7 9 21-29 15-23 (58)
227 1pqv_S STP-alpha, transcriptio 43.7 22 0.00074 26.2 3.5 9 21-29 268-276 (309)
228 3lrr_A Probable ATP-dependent 43.7 15 0.00053 23.6 2.4 30 19-51 57-88 (121)
229 1tjl_A DNAK suppressor protein 43.2 4.6 0.00016 26.9 -0.2 20 84-103 112-138 (151)
230 1z60_A TFIIH basal transcripti 43.1 7.5 0.00026 21.9 0.7 28 57-103 31-58 (59)
231 2pzi_A Probable serine/threoni 42.9 7.3 0.00025 31.0 0.9 8 98-105 57-64 (681)
232 2i5o_A DNA polymerase ETA; zin 42.7 13 0.00045 19.1 1.6 11 19-29 7-17 (39)
233 3b08_B Ranbp-type and C3HC4-ty 42.7 17 0.00058 20.8 2.2 12 56-67 8-19 (64)
234 1x3h_A Leupaxin; paxillin fami 42.6 35 0.0012 19.0 3.8 39 55-95 14-53 (80)
235 4ayc_A E3 ubiquitin-protein li 42.6 6.1 0.00021 25.2 0.4 9 22-30 54-62 (138)
236 1l1o_C Replication protein A 7 42.5 9.3 0.00032 25.8 1.3 30 55-94 42-73 (181)
237 2yqq_A Zinc finger HIT domain- 42.5 21 0.00073 19.8 2.6 10 83-92 23-32 (56)
238 1x4j_A Ring finger protein 38; 42.4 16 0.00053 20.4 2.1 12 56-67 23-34 (75)
239 1x61_A Thyroid receptor intera 42.2 31 0.0011 18.8 3.4 7 23-29 7-13 (72)
240 3q87_A Putative uncharacterize 41.7 2.8 9.7E-05 27.3 -1.4 17 54-70 97-113 (125)
241 2ee8_A Protein ODD-skipped-rel 41.5 4.1 0.00014 23.8 -0.6 13 56-68 45-57 (106)
242 2iyb_E Testin, TESS, TES; LIM 41.3 19 0.00064 19.6 2.3 40 56-95 2-44 (65)
243 2xzm_9 RPS31E; ribosome, trans 41.0 8.8 0.0003 26.5 1.0 25 82-106 112-140 (189)
244 3w0f_A Endonuclease 8-like 3; 40.7 9 0.00031 28.2 1.0 21 85-105 253-281 (287)
245 2xqn_T Testin, TESS; metal-bin 40.6 13 0.00045 22.9 1.7 40 55-95 29-75 (126)
246 2lo3_A SAGA-associated factor 40.4 14 0.00049 19.5 1.5 12 84-95 18-29 (44)
247 3p2a_A Thioredoxin 2, putative 40.3 34 0.0012 21.0 3.7 33 21-68 5-37 (148)
248 2vrw_B P95VAV, VAV1, proto-onc 40.2 22 0.00077 26.4 3.2 30 55-95 356-386 (406)
249 3ga3_A Interferon-induced heli 39.8 18 0.0006 23.7 2.2 29 19-51 65-93 (133)
250 2ysj_A Tripartite motif-contai 39.8 6.2 0.00021 21.3 0.0 7 97-103 57-63 (63)
251 1n0z_A ZNF265; zinc finger, RN 39.8 20 0.0007 18.8 2.1 9 84-92 31-39 (45)
252 3twl_A Formamidopyrimidine-DNA 39.6 7.5 0.00026 28.7 0.4 22 84-105 248-277 (310)
253 2dlo_A Thyroid receptor-intera 39.1 41 0.0014 18.9 3.7 39 55-95 14-53 (81)
254 2d9k_A FLN29 gene product; zin 39.0 7.4 0.00025 22.0 0.3 39 55-94 16-54 (75)
255 3flo_B DNA polymerase alpha ca 38.4 9.1 0.00031 26.8 0.7 73 20-103 21-110 (206)
256 3nis_A E3 ubiquitin-protein li 38.3 23 0.0008 21.1 2.5 19 83-103 21-39 (82)
257 3f6q_B LIM and senescent cell 38.3 21 0.00073 19.3 2.2 42 55-96 10-52 (72)
258 2c2l_A CHIP, carboxy terminus 37.7 30 0.001 23.8 3.4 11 56-66 208-218 (281)
259 2d8x_A Protein pinch; LIM doma 37.6 25 0.00086 19.2 2.5 40 55-96 4-44 (70)
260 3alr_A Nanos protein; zinc-fin 37.6 13 0.00044 23.4 1.3 21 82-102 70-92 (106)
261 1yc5_A NAD-dependent deacetyla 37.2 9.8 0.00034 26.8 0.8 43 50-95 115-157 (246)
262 1vzi_A Desulfoferrodoxin; ferr 37.0 16 0.00054 23.5 1.6 33 19-69 5-37 (126)
263 2cu8_A Cysteine-rich protein 2 36.9 20 0.00069 20.0 2.0 40 55-95 8-48 (76)
264 2d8y_A Eplin protein; LIM doma 36.9 15 0.00052 21.4 1.5 14 55-68 41-54 (91)
265 2kre_A Ubiquitin conjugation f 36.6 21 0.00073 21.5 2.2 12 84-95 64-75 (100)
266 2fnf_X Putative RAS effector N 36.6 24 0.0008 20.3 2.2 25 56-93 35-59 (72)
267 1s5p_A NAD-dependent deacetyla 36.5 7.3 0.00025 27.4 -0.0 9 21-29 113-121 (235)
268 1x6m_A GFA, glutathione-depend 36.5 6.4 0.00022 27.0 -0.3 11 97-107 98-108 (196)
269 2dj7_A Actin-binding LIM prote 36.4 16 0.00053 21.0 1.5 10 20-29 14-23 (80)
270 3mhs_E SAGA-associated factor 36.4 11 0.00039 23.3 0.8 16 82-97 74-89 (96)
271 1v6g_A Actin binding LIM prote 36.2 38 0.0013 19.0 3.2 50 55-106 14-72 (81)
272 3h99_A Methionyl-tRNA syntheta 36.1 9.4 0.00032 30.0 0.5 36 57-106 156-194 (560)
273 3lcz_A YCZA, inhibitor of trap 35.8 12 0.00041 20.4 0.8 20 85-104 11-30 (53)
274 2co8_A NEDD9 interacting prote 35.4 62 0.0021 18.3 4.3 8 22-29 16-23 (82)
275 3u5c_f 40S ribosomal protein S 35.3 16 0.00056 24.0 1.6 25 82-106 117-147 (152)
276 1ma3_A SIR2-AF2, transcription 35.2 13 0.00043 26.4 1.1 44 49-95 116-160 (253)
277 2cur_A Skeletal muscle LIM-pro 35.0 26 0.0009 19.0 2.3 39 55-95 4-43 (69)
278 2qfd_A Probable ATP-dependent 35.0 25 0.00085 23.3 2.4 30 19-51 79-110 (145)
279 3hct_A TNF receptor-associated 34.8 4.4 0.00015 25.1 -1.3 11 85-95 55-65 (118)
280 2i13_A AART; DNA binding, zinc 34.5 5.6 0.00019 25.9 -0.8 51 55-105 48-113 (190)
281 2kr4_A Ubiquitin conjugation f 34.5 22 0.00077 20.6 2.0 11 84-94 49-59 (85)
282 4b6d_A RAC GTPase-activating p 34.4 18 0.0006 20.2 1.4 12 55-66 34-45 (61)
283 3bbo_3 Ribosomal protein L33; 34.4 43 0.0015 19.2 3.1 12 82-93 48-59 (66)
284 4iao_A NAD-dependent histone d 34.1 20 0.0007 28.3 2.2 11 20-30 298-308 (492)
285 1gnf_A Transcription factor GA 33.9 9.8 0.00034 20.3 0.2 9 21-29 4-12 (46)
286 2rgt_A Fusion of LIM/homeobox 33.7 38 0.0013 22.1 3.2 39 55-95 32-77 (169)
287 1x4k_A Skeletal muscle LIM-pro 33.6 20 0.00067 19.7 1.5 7 23-29 7-13 (72)
288 2cor_A Pinch protein; LIM doma 33.0 67 0.0023 18.0 4.9 13 83-95 41-53 (79)
289 1x4s_A Protein FON, zinc finge 32.7 16 0.00056 20.6 1.1 10 83-92 26-35 (59)
290 2ebr_A Nuclear pore complex pr 32.6 29 0.00099 18.5 2.0 15 52-66 7-21 (47)
291 2ebq_A Nuclear pore complex pr 32.2 33 0.0011 18.3 2.2 21 85-105 13-33 (47)
292 2d8z_A Four and A half LIM dom 32.0 35 0.0012 18.5 2.5 39 55-95 4-43 (70)
293 3hcs_A TNF receptor-associated 31.8 5.4 0.00019 26.2 -1.3 11 85-95 55-65 (170)
294 2m0e_A Zinc finger and BTB dom 31.1 20 0.0007 14.7 1.1 7 85-91 4-10 (29)
295 2f42_A STIP1 homology and U-bo 31.1 30 0.001 23.5 2.3 11 56-66 106-116 (179)
296 2ea6_A Ring finger protein 4; 30.8 4 0.00014 22.3 -1.8 21 86-106 45-65 (69)
297 2l4z_A DNA endonuclease RBBP8, 30.8 30 0.001 21.6 2.2 39 55-94 60-99 (123)
298 3o9x_A Uncharacterized HTH-typ 30.8 44 0.0015 20.5 3.1 9 21-29 2-10 (133)
299 1wgm_A Ubiquitin conjugation f 30.7 36 0.0012 20.4 2.5 11 84-94 58-68 (98)
300 2x5c_A Hypothetical protein OR 30.5 24 0.00083 22.0 1.7 19 20-38 51-71 (131)
301 2xeu_A Ring finger protein 4; 30.1 3.4 0.00012 22.2 -2.2 12 84-95 45-56 (64)
302 2vl6_A SSO MCM N-TER, minichro 29.7 23 0.0008 25.1 1.7 11 56-66 141-153 (268)
303 1bbo_A Human enhancer-binding 29.3 31 0.0011 17.2 1.8 37 58-94 3-40 (57)
304 2dar_A PDZ and LIM domain prot 29.1 40 0.0014 19.4 2.5 40 54-95 23-63 (90)
305 1wg2_A Zinc finger (AN1-like) 29.0 30 0.001 19.8 1.8 11 56-66 15-25 (64)
306 1g47_A Pinch protein; LIM doma 28.9 38 0.0013 18.7 2.3 10 85-94 41-50 (77)
307 2xpn_B SPT6, chromatin structu 28.3 47 0.0016 15.4 2.0 17 3-19 5-21 (26)
308 2kiz_A E3 ubiquitin-protein li 28.3 5 0.00017 22.1 -1.7 12 84-95 52-63 (69)
309 3glr_A NAD-dependent deacetyla 28.2 17 0.00059 26.5 0.8 38 55-95 138-175 (285)
310 2k16_A Transcription initiatio 28.2 82 0.0028 17.6 3.7 28 19-66 16-43 (75)
311 1ptq_A Protein kinase C delta 28.1 40 0.0014 17.2 2.1 11 55-65 27-37 (50)
312 3ny3_A E3 ubiquitin-protein li 27.5 20 0.00067 21.0 0.8 13 53-65 14-26 (75)
313 3fl2_A E3 ubiquitin-protein li 27.4 8.6 0.00029 23.9 -0.9 12 84-95 88-99 (124)
314 3uk3_C Zinc finger protein 217 27.3 35 0.0012 17.0 1.8 38 57-94 5-43 (57)
315 1m3v_A FLIN4, fusion of the LI 27.3 5.9 0.0002 24.7 -1.7 12 56-67 32-43 (122)
316 1nyp_A Pinch protein; LIM doma 27.2 37 0.0013 18.2 2.0 10 85-94 33-42 (66)
317 1klr_A Zinc finger Y-chromosom 27.2 24 0.00083 14.6 1.0 7 85-91 4-10 (30)
318 2k5r_A Uncharacterized protein 26.9 9.2 0.00031 23.7 -0.8 16 55-70 52-67 (97)
319 3gj7_B Nuclear pore complex pr 26.6 38 0.0013 20.7 2.1 25 82-106 71-95 (98)
320 2adr_A ADR1; transcription reg 26.2 43 0.0015 16.9 2.0 38 57-94 3-41 (60)
321 1x64_A Alpha-actinin-2 associa 25.9 53 0.0018 18.8 2.6 39 55-95 24-63 (89)
322 3ng2_A RNF4, snurf, ring finge 25.9 5.9 0.0002 21.8 -1.7 12 84-95 52-63 (71)
323 2k5c_A Uncharacterized protein 25.4 22 0.00076 21.6 0.8 40 55-94 7-62 (95)
324 1qf8_A Casein kinase II; casei 25.4 37 0.0013 23.2 2.0 25 46-70 118-148 (182)
325 4a2v_A RIG-I, retinoic acid in 25.4 47 0.0016 21.5 2.5 31 19-51 59-91 (131)
326 1znf_A 31ST zinc finger from X 25.4 29 0.001 14.1 1.1 10 58-67 3-12 (27)
327 2ct2_A Tripartite motif protei 25.2 13 0.00043 21.2 -0.4 11 84-94 57-67 (88)
328 1ard_A Yeast transcription fac 25.2 29 0.00099 14.3 1.1 10 58-67 4-13 (29)
329 2ppt_A Thioredoxin-2; thiredox 24.8 48 0.0016 20.9 2.4 30 21-66 14-44 (155)
330 2zjr_1 50S ribosomal protein L 24.7 23 0.0008 19.5 0.8 10 56-65 11-20 (55)
331 4dgl_A Casein kinase II subuni 24.7 31 0.001 24.4 1.5 16 56-71 134-149 (215)
332 1j8f_A SIRT2, sirtuin 2, isofo 24.5 20 0.00067 26.5 0.5 10 57-66 186-195 (323)
333 2ftc_P Mitochondrial ribosomal 24.2 22 0.00075 19.3 0.6 8 57-64 12-19 (52)
334 1zt2_A DNA primase small subun 23.9 22 0.00074 26.6 0.7 22 82-105 112-133 (330)
335 1x62_A C-terminal LIM domain p 23.5 43 0.0015 18.8 1.8 39 55-95 14-53 (79)
336 2j9u_B VPS36, vacuolar protein 23.5 53 0.0018 19.4 2.2 33 56-92 17-49 (76)
337 4gop_C Putative uncharacterize 23.5 32 0.0011 26.1 1.6 30 55-94 307-338 (444)
338 4gzn_C ZFP-57, zinc finger pro 23.4 56 0.0019 17.5 2.2 38 57-94 5-43 (60)
339 3nyb_B Protein AIR2; polya RNA 23.2 52 0.0018 19.4 2.2 10 20-29 4-13 (83)
340 2ebv_A Nuclear pore complex pr 23.2 52 0.0018 18.3 2.0 24 83-106 31-54 (57)
341 1z6u_A NP95-like ring finger p 23.1 13 0.00043 24.3 -0.7 12 85-96 115-126 (150)
342 1a7i_A QCRP2 (LIM1); LIM domai 23.1 28 0.00096 19.6 0.9 13 56-68 34-46 (81)
343 1wfp_A Zinc finger (AN1-like) 22.9 49 0.0017 19.4 2.0 12 84-95 26-37 (74)
344 2qgp_A HNH endonuclease; Q39X4 22.9 26 0.00088 21.7 0.8 9 84-92 36-44 (112)
345 2lvu_A Zinc finger and BTB dom 28.6 18 0.00061 14.9 0.0 6 85-90 4-9 (26)
346 3vk6_A E3 ubiquitin-protein li 22.8 8.8 0.0003 24.1 -1.4 10 84-93 38-47 (101)
347 1paa_A Yeast transcription fac 22.7 34 0.0012 14.2 1.1 10 58-67 4-13 (30)
348 2f2e_A PA1607; transcription f 22.6 42 0.0014 21.4 1.8 13 83-95 126-138 (146)
349 2kae_A GATA-type transcription 22.2 21 0.00072 20.8 0.2 12 55-66 7-18 (71)
350 3ql9_A Transcriptional regulat 22.0 31 0.001 22.3 1.0 12 55-66 7-18 (129)
351 1zbd_B Rabphilin-3A; G protein 21.8 48 0.0016 21.4 2.0 10 85-94 82-91 (134)
352 1nc8_A Nucleocapsid protein; H 21.8 60 0.002 15.0 1.9 9 84-92 7-15 (29)
353 2kvh_A Zinc finger and BTB dom 21.8 47 0.0016 13.5 1.4 9 58-66 5-13 (27)
354 1wfh_A Zinc finger (AN1-like) 21.7 51 0.0017 18.8 1.8 12 56-67 15-26 (64)
355 1e4u_A Transcriptional repress 21.6 47 0.0016 19.0 1.7 11 84-94 51-61 (78)
356 1rmd_A RAG1; V(D)J recombinati 21.5 11 0.00037 23.0 -1.2 12 84-95 59-70 (116)
357 3v2d_6 50S ribosomal protein L 21.3 21 0.00072 19.7 0.1 8 57-64 11-18 (54)
358 2l0b_A E3 ubiquitin-protein li 21.1 53 0.0018 19.0 1.9 12 56-67 40-51 (91)
359 1p7a_A BF3, BKLF, kruppel-like 21.0 34 0.0012 15.3 0.9 9 83-91 11-19 (37)
360 2kvf_A Zinc finger and BTB dom 20.9 52 0.0018 13.4 1.5 9 58-66 5-13 (28)
361 2m0d_A Zinc finger and BTB dom 20.8 53 0.0018 13.3 1.5 9 58-66 5-13 (30)
362 2yrc_A Protein transport prote 20.8 43 0.0015 18.5 1.4 39 19-70 7-47 (59)
363 2lvr_A Zinc finger and BTB dom 26.0 21 0.00072 14.9 0.0 8 84-91 4-11 (30)
364 2epr_A POZ-, at HOOK-, and zin 20.6 68 0.0023 15.4 2.1 13 56-68 12-24 (48)
365 2enz_A NPKC-theta, protein kin 20.2 70 0.0024 17.5 2.2 12 55-66 39-50 (65)
No 1
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=98.11 E-value=8.2e-07 Score=54.71 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=24.3
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCceecC------CCccCcCCCC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVEP------DFSFCPYCGS 105 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~~------~~~fCP~CG~ 105 (107)
....|..|+..+.. ...||.||.+++. ...||+.||.
T Consensus 17 ~~~~C~~C~~~~~~--------------~afCPeCgq~Le~lkACGA~~yFC~~C~~ 59 (81)
T 2jrp_A 17 DTAHCETCAKDFSL--------------QALCPDCRQPLQVLKACGAVDYFCQNGHG 59 (81)
T ss_dssp SEEECTTTCCEEEE--------------EEECSSSCSCCCEEEETTEEEECCTTTTC
T ss_pred CceECccccccCCC--------------cccCcchhhHHHHHHhcCCcCeeeccCCC
Confidence 46678888887644 2367777766644 3667777774
No 2
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=97.82 E-value=4.7e-06 Score=51.29 Aligned_cols=39 Identities=23% Similarity=0.618 Sum_probs=24.5
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCCccCccccccCCceecCCCccCcCCCCCC
Q 033949 57 LFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVEPDFSFCPYCGSAL 107 (107)
Q Consensus 57 ~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~~~~~fCP~CG~~l 107 (107)
+.||.|+..++.+. ....|..|++.+...+ |||.||++|
T Consensus 3 ~~CP~C~~~l~~~~-----------~~~~C~~C~~~~~~~a-fCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNG-----------DTAHCETCAKDFSLQA-LCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECS-----------SEEECTTTCCEEEEEE-ECSSSCSCC
T ss_pred CCCCCCCCccccCC-----------CceECccccccCCCcc-cCcchhhHH
Confidence 45667766654432 1345777777777777 777777665
No 3
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=97.13 E-value=0.00027 Score=42.27 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=16.5
Q ss_pred ccccccCCceecC---CCccCcCCCCC
Q 033949 83 VSKCRFCDRLVEP---DFSFCPYCGSA 106 (107)
Q Consensus 83 ~~~C~~CG~~i~~---~~~fCP~CG~~ 106 (107)
.+.|++||.+++. ++..||+||.+
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~R 54 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHR 54 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCce
Confidence 4677777777433 56778888774
No 4
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.51 E-value=0.0014 Score=36.76 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=22.8
Q ss_pred CccccccCCceecCCCccCcCCCCC
Q 033949 82 DVSKCRFCDRLVEPDFSFCPYCGSA 106 (107)
Q Consensus 82 ~~~~C~~CG~~i~~~~~fCP~CG~~ 106 (107)
...+|+.||+.+..++..|..||+.
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 4688999999999999999999985
No 5
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.49 E-value=0.0018 Score=37.86 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=16.5
Q ss_pred ccccccCCceecC---CCccCcCCCCCC
Q 033949 83 VSKCRFCDRLVEP---DFSFCPYCGSAL 107 (107)
Q Consensus 83 ~~~C~~CG~~i~~---~~~fCP~CG~~l 107 (107)
.+.|..||++++. +...||+||.++
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCcEE
Confidence 4677777777655 456777777653
No 6
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=96.35 E-value=0.0013 Score=44.64 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=16.2
Q ss_pred ccccccCCceecCCC--ccCcCCCCC
Q 033949 83 VSKCRFCDRLVEPDF--SFCPYCGSA 106 (107)
Q Consensus 83 ~~~C~~CG~~i~~~~--~fCP~CG~~ 106 (107)
.+.|..||...+... .+||.||++
T Consensus 132 ~y~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 132 RYVCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp CEEESSSCCEESSCCGGGBCTTTCCB
T ss_pred EEECCCCCCcccCCCCCCcCCCCCCc
Confidence 467777777766433 378888775
No 7
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.15 E-value=0.016 Score=37.21 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.1
Q ss_pred CceeCCCCCCCCCCCC
Q 033949 55 PALFCNNCNLLFPSSL 70 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~ 70 (107)
....|+.||...+++.
T Consensus 25 ~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 25 LRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCEECSSSCCEECCSC
T ss_pred eEEECCCCCCeEEcCC
Confidence 3799999999887754
No 8
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=96.07 E-value=0.00076 Score=42.69 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=29.4
Q ss_pred CcEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCceecC
Q 033949 20 GAGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 20 ~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~~ 95 (107)
.+..||.|++..+ | .+....|..|+..+.. ...||.|+.+++.
T Consensus 31 M~~~CP~Cq~eL~-----------------~--~g~~~hC~~C~~~f~~--------------~a~CPdC~q~Lev 73 (101)
T 2jne_A 31 MELHCPQCQHVLD-----------------Q--DNGHARCRSCGEFIEM--------------KALCPDCHQPLQV 73 (101)
T ss_dssp CCCBCSSSCSBEE-----------------E--ETTEEEETTTCCEEEE--------------EEECTTTCSBCEE
T ss_pred ccccCccCCCcce-----------------e--cCCEEECccccchhhc--------------cccCcchhhHHHH
Confidence 3468999999421 2 2356679999887743 4578888888765
No 9
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=96.04 E-value=0.0011 Score=41.91 Aligned_cols=40 Identities=28% Similarity=0.755 Sum_probs=30.1
Q ss_pred ceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCceecCCCccCcCCCCCC
Q 033949 56 ALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVEPDFSFCPYCGSAL 107 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~~~~~fCP~CG~~l 107 (107)
.+.||.|+..++.+. ....|..|+..... --+||.||++|
T Consensus 32 ~~~CP~Cq~eL~~~g-----------~~~hC~~C~~~f~~-~a~CPdC~q~L 71 (101)
T 2jne_A 32 ELHCPQCQHVLDQDN-----------GHARCRSCGEFIEM-KALCPDCHQPL 71 (101)
T ss_dssp CCBCSSSCSBEEEET-----------TEEEETTTCCEEEE-EEECTTTCSBC
T ss_pred cccCccCCCcceecC-----------CEEECccccchhhc-cccCcchhhHH
Confidence 478999998876533 24569999998554 45899999986
No 10
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=95.62 E-value=0.0071 Score=34.98 Aligned_cols=12 Identities=17% Similarity=0.301 Sum_probs=6.8
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.||+.+..
T Consensus 19 ~~CP~CG~~T~~ 30 (60)
T 2apo_B 19 EICPKCGEKTVI 30 (60)
T ss_dssp SBCSSSCSBCBC
T ss_pred ccCcCCCCcCCC
Confidence 356666666543
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=95.45 E-value=0.012 Score=32.33 Aligned_cols=32 Identities=16% Similarity=0.508 Sum_probs=22.9
Q ss_pred cEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCC
Q 033949 21 AGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSS 69 (107)
Q Consensus 21 ~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~ 69 (107)
...||.||+ .+ .++...+.+.|+.||..++..
T Consensus 5 ~~~CP~C~~~~l-----------------~~d~~~gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 5 QKVCPACESAEL-----------------IYDPERGEIVCAKCGYVIEEN 37 (50)
T ss_dssp CCSCTTTSCCCE-----------------EEETTTTEEEESSSCCBCCCC
T ss_pred cEeCcCCCCcce-----------------EEcCCCCeEECcccCCccccc
Confidence 346999988 43 244455789999999988653
No 12
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=95.33 E-value=0.0092 Score=34.50 Aligned_cols=9 Identities=22% Similarity=0.767 Sum_probs=4.7
Q ss_pred ccccCCcee
Q 033949 85 KCRFCDRLV 93 (107)
Q Consensus 85 ~C~~CG~~i 93 (107)
.||.||+.+
T Consensus 19 ~CP~CG~~t 27 (60)
T 2aus_D 19 TCPVCGEKT 27 (60)
T ss_dssp BCTTTCSBC
T ss_pred cCcCCCCcc
Confidence 455555544
No 13
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.019 Score=38.10 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=13.2
Q ss_pred ceeCCCCCCCCCCCCC
Q 033949 56 ALFCNNCNLLFPSSLP 71 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~ 71 (107)
...|+.||...+++..
T Consensus 46 ~~~CrtCgY~~~~~~~ 61 (133)
T 3qt1_I 46 LFECRTCSYVEEAGSP 61 (133)
T ss_dssp CCBCSSSCCBCCCSCS
T ss_pred EEECCCCCCcEEcCCc
Confidence 6899999999877554
No 14
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=94.54 E-value=0.027 Score=33.45 Aligned_cols=10 Identities=30% Similarity=0.826 Sum_probs=5.7
Q ss_pred CceeCCCCCC
Q 033949 55 PALFCNNCNL 64 (107)
Q Consensus 55 ~~~~C~~CG~ 64 (107)
+.+.|+.||+
T Consensus 44 d~irCp~CG~ 53 (70)
T 1twf_L 44 DAVRCKDCGH 53 (70)
T ss_dssp STTCCSSSCC
T ss_pred CCccCCCCCc
Confidence 4555666665
No 15
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=94.28 E-value=0.023 Score=38.27 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=20.6
Q ss_pred CCceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCceec
Q 033949 54 EPALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVE 94 (107)
Q Consensus 54 ~~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~ 94 (107)
.+...|..||+.++... ....||.||+++.
T Consensus 130 ~~~y~C~~Cg~~~~~~~-----------~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 130 KWRYVCIGCGRKFSTLP-----------PGGVCPDCGSKVK 159 (165)
T ss_dssp CCCEEESSSCCEESSCC-----------GGGBCTTTCCBEE
T ss_pred cEEEECCCCCCcccCCC-----------CCCcCCCCCCcce
Confidence 36778888888886432 1347888888753
No 16
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=94.00 E-value=0.028 Score=36.14 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=10.2
Q ss_pred cccccCCceecC--CCc-cCcCCCCC
Q 033949 84 SKCRFCDRLVEP--DFS-FCPYCGSA 106 (107)
Q Consensus 84 ~~C~~CG~~i~~--~~~-fCP~CG~~ 106 (107)
.+|.+||...+. ... .||.||++
T Consensus 74 ~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 74 LECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp EECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred EEcCCCCCEEeCCCCCCCcCccccCC
Confidence 445555554332 122 45555543
No 17
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=93.87 E-value=0.036 Score=41.44 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=15.8
Q ss_pred ceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCce
Q 033949 56 ALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRL 92 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~ 92 (107)
++.|+-||+...... ..|++||..
T Consensus 208 ~l~Cs~C~t~W~~~R-------------~~C~~Cg~~ 231 (309)
T 2fiy_A 208 YLSCSLCACEWHYVR-------------IKCSHCEES 231 (309)
T ss_dssp EEEETTTCCEEECCT-------------TSCSSSCCC
T ss_pred EEEeCCCCCEEeecC-------------cCCcCCCCC
Confidence 778888887765422 457777763
No 18
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.82 E-value=0.018 Score=31.97 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=10.7
Q ss_pred ccccccCCcee--c--CCCccCcCCCC
Q 033949 83 VSKCRFCDRLV--E--PDFSFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i--~--~~~~fCP~CG~ 105 (107)
...||.||+.+ . .+-.+|+.||.
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGY 45 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCC
T ss_pred cccCCCCCCceEEecCCCeEECCCCCC
Confidence 34555555522 1 13445555553
No 19
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=93.78 E-value=0.039 Score=30.31 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=20.0
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCccCccccccCCceec
Q 033949 58 FCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVE 94 (107)
Q Consensus 58 ~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~ 94 (107)
.|-.||..+..++... .-..+||+||..|.
T Consensus 5 ~C~rCg~~fs~~el~~-------lP~IrCpyCGyrii 34 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKV-------LPGVRCPYCGYKII 34 (48)
T ss_dssp CCCCTTTTCCCCCSCC-------CSSSCCTTTCCSCE
T ss_pred EeeccCCCccHHHHhh-------CCCcccCccCcEEE
Confidence 5888998886655321 01467999998764
No 20
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=93.60 E-value=0.063 Score=29.45 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=7.3
Q ss_pred CceeCCCCCCCC
Q 033949 55 PALFCNNCNLLF 66 (107)
Q Consensus 55 ~~~~C~~CG~~~ 66 (107)
+.+.||+||...
T Consensus 22 P~IrCpyCGyri 33 (48)
T 4ayb_P 22 PGVRCPYCGYKI 33 (48)
T ss_dssp SSSCCTTTCCSC
T ss_pred CCcccCccCcEE
Confidence 455666666654
No 21
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=93.53 E-value=0.024 Score=30.99 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=19.1
Q ss_pred CceeCCCCCC-CCCCCCCCCCCCCCCccCccccccCCceecC
Q 033949 55 PALFCNNCNL-LFPSSLPPPPPPPPLVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~-~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~~ 95 (107)
..+.||.||. .+..+... ....|++||..++.
T Consensus 4 ~~~~CP~C~~~~l~~d~~~---------gelvC~~CG~v~~e 36 (50)
T 1pft_A 4 KQKVCPACESAELIYDPER---------GEIVCAKCGYVIEE 36 (50)
T ss_dssp SCCSCTTTSCCCEEEETTT---------TEEEESSSCCBCCC
T ss_pred ccEeCcCCCCcceEEcCCC---------CeEECcccCCcccc
Confidence 4567888887 43222211 24678888886654
No 22
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=93.39 E-value=0.059 Score=31.35 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=8.3
Q ss_pred CceeCCCCCCCCC
Q 033949 55 PALFCNNCNLLFP 67 (107)
Q Consensus 55 ~~~~C~~CG~~~~ 67 (107)
+.+.|++||..+-
T Consensus 37 ~~iRC~~CG~RIL 49 (63)
T 3h0g_L 37 EVIRCRECGHRVM 49 (63)
T ss_dssp SCCCCSSSCCCCC
T ss_pred CceECCCCCcEEE
Confidence 5666777776653
No 23
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=93.24 E-value=0.019 Score=35.20 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=23.0
Q ss_pred CCcEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 19 SGAGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 19 ~~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
.....||+||.... +....+.+.|++||..+.-
T Consensus 25 ~~~y~Cp~CG~~~v-----------------~r~atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 25 NEDHACPNCGEDRV-----------------DRQGTGIWQCSYCDYKFTG 57 (83)
T ss_dssp HSCEECSSSCCEEE-----------------EEEETTEEEETTTCCEEEC
T ss_pred cccCcCCCCCCcce-----------------eccCCCeEECCCCCCEecC
Confidence 35778999999221 1223479999999998644
No 24
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=92.64 E-value=0.065 Score=34.37 Aligned_cols=9 Identities=22% Similarity=0.715 Sum_probs=4.4
Q ss_pred cEECCCCCC
Q 033949 21 AGRCINCGS 29 (107)
Q Consensus 21 ~~~C~~Cg~ 29 (107)
...|.+||.
T Consensus 73 ~~~C~~CG~ 81 (119)
T 2kdx_A 73 ELECKDCSH 81 (119)
T ss_dssp EEECSSSSC
T ss_pred eEEcCCCCC
Confidence 344555554
No 25
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=92.59 E-value=0.033 Score=34.09 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=12.5
Q ss_pred ccccccCCceecC----CCccCcCCCC
Q 033949 83 VSKCRFCDRLVEP----DFSFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~~----~~~fCP~CG~ 105 (107)
.+.||+||+.... +--.|++||.
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDY 53 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCC
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCC
Confidence 4566666664432 3344666664
No 26
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=92.42 E-value=0.05 Score=36.07 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=8.8
Q ss_pred CceeCCCCCCCCCCC
Q 033949 55 PALFCNNCNLLFPSS 69 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~ 69 (107)
....|.+||+.++.+
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 69 AVFKCRNCNYEWKLK 83 (139)
T ss_dssp CEEEETTTCCEEEGG
T ss_pred CcEECCCCCCEEecc
Confidence 455666666665543
No 27
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=92.33 E-value=0.11 Score=29.29 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=11.2
Q ss_pred ccccccCCceec----CCCccCcCCCC
Q 033949 83 VSKCRFCDRLVE----PDFSFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~----~~~~fCP~CG~ 105 (107)
...||.||+.+- .+.-+|+.||.
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgy 44 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGY 44 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCC
T ss_pred cccCcCCCCceeEeccCCEEECCCCCC
Confidence 345555555332 13445555553
No 28
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=92.30 E-value=0.05 Score=36.07 Aligned_cols=25 Identities=44% Similarity=0.821 Sum_probs=19.5
Q ss_pred CccccccCCceecCC-----------------------CccCcCCCCC
Q 033949 82 DVSKCRFCDRLVEPD-----------------------FSFCPYCGSA 106 (107)
Q Consensus 82 ~~~~C~~CG~~i~~~-----------------------~~fCP~CG~~ 106 (107)
...+|.+||.+...+ ...||.||++
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp CEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred CcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 367899999996542 4669999986
No 29
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=92.29 E-value=0.24 Score=28.08 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=23.0
Q ss_pred CccccccCCceecCCCccCcCCCCC
Q 033949 82 DVSKCRFCDRLVEPDFSFCPYCGSA 106 (107)
Q Consensus 82 ~~~~C~~CG~~i~~~~~fCP~CG~~ 106 (107)
+.++|-.|++.+++.|+.|-.||++
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred chhhhccccCcCCcccccccCCCCC
Confidence 4789999999999999999999974
No 30
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=92.25 E-value=0.14 Score=31.00 Aligned_cols=6 Identities=33% Similarity=1.137 Sum_probs=3.1
Q ss_pred CCCCCC
Q 033949 24 CINCGS 29 (107)
Q Consensus 24 C~~Cg~ 29 (107)
||+|++
T Consensus 28 CP~C~~ 33 (86)
T 2ct7_A 28 CAQCSF 33 (86)
T ss_dssp CSSSCC
T ss_pred CcCCCc
Confidence 555554
No 31
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=91.91 E-value=0.098 Score=30.65 Aligned_cols=31 Identities=13% Similarity=0.319 Sum_probs=23.9
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFP 67 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~ 67 (107)
..++||.|++ .. =|+.....+.|..||..+.
T Consensus 6 m~VKCp~C~niq~-----------------VFShA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 6 VKVKCPDCEHEQV-----------------IFDHPSTIVKCIICGRTVA 37 (66)
T ss_dssp EEEECTTTCCEEE-----------------EESSCSSCEECSSSCCEEE
T ss_pred EEEECCCCCCceE-----------------EEecCceEEEcccCCCEEe
Confidence 3578999999 32 2666667999999999884
No 32
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=91.80 E-value=0.2 Score=33.02 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=22.9
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCceec
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVE 94 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~ 94 (107)
...+||.||..+-+...... ..+...|++||.+.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~-----~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKEN-----NRLLFECRTCSYVEE 57 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTT-----CCBCCBCSSSCCBCC
T ss_pred CCeeCCCCCCEeeECccCCC-----ceeEEECCCCCCcEE
Confidence 47889999999866442110 013578999988643
No 33
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=91.53 E-value=0.16 Score=29.20 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=8.7
Q ss_pred eeCCCCCCCCCCCC
Q 033949 57 LFCNNCNLLFPSSL 70 (107)
Q Consensus 57 ~~C~~CG~~~~~~~ 70 (107)
..||.||....+.+
T Consensus 19 ~~CP~CG~~T~~~h 32 (60)
T 2apo_B 19 EICPKCGEKTVIPK 32 (60)
T ss_dssp SBCSSSCSBCBCCC
T ss_pred ccCcCCCCcCCCCC
Confidence 34777777765544
No 34
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=91.14 E-value=0.13 Score=31.11 Aligned_cols=23 Identities=26% Similarity=0.677 Sum_probs=13.2
Q ss_pred cccccCCceecC-CCccCcCCCCC
Q 033949 84 SKCRFCDRLVEP-DFSFCPYCGSA 106 (107)
Q Consensus 84 ~~C~~CG~~i~~-~~~fCP~CG~~ 106 (107)
..|..|-+.... +-.|||.||++
T Consensus 16 LrC~aCf~~t~~~~k~FCp~CGn~ 39 (79)
T 2con_A 16 LRCHGCFKTTSDMNRVFCGHCGNK 39 (79)
T ss_dssp EECSSSCCEESCSSCCSCSSSCCS
T ss_pred eEecccceECCCcccccccccCcc
Confidence 456666655544 45566666653
No 35
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=90.78 E-value=0.21 Score=31.90 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=20.7
Q ss_pred ceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCcee
Q 033949 56 ALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLV 93 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i 93 (107)
..+||.||..+.+...... ......|++||.+.
T Consensus 4 m~FCp~Cgn~L~~~~~~~~-----~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVD-----RVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTT-----CCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCC-----CeeEEECCCCCCeE
Confidence 5689999999866442110 01246788888754
No 36
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=90.68 E-value=0.11 Score=29.84 Aligned_cols=22 Identities=27% Similarity=0.837 Sum_probs=13.0
Q ss_pred ccccccCCceecCCCccCcCCCC
Q 033949 83 VSKCRFCDRLVEPDFSFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~~~~~fCP~CG~ 105 (107)
...|++||+. ...-..||+||.
T Consensus 30 l~~c~~cG~~-~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGK-KLSHHICPNCGY 51 (60)
T ss_dssp CEECTTTCCE-ECTTBCCTTTCB
T ss_pred ceECCCCCCE-eCCceEcCCCCc
Confidence 3456666666 345556666664
No 37
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.50 E-value=0.16 Score=29.46 Aligned_cols=31 Identities=19% Similarity=0.483 Sum_probs=23.5
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFP 67 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~ 67 (107)
..++||.|++ .. =|+.....+.|..||..+.
T Consensus 14 m~VkCp~C~~~q~-----------------VFSha~t~V~C~~Cgt~L~ 45 (63)
T 3j20_W 14 LRVKCIDCGNEQI-----------------VFSHPATKVRCLICGATLV 45 (63)
T ss_dssp EEEECSSSCCEEE-----------------EESSCSSCEECSSSCCEEE
T ss_pred EEEECCCCCCeeE-----------------EEecCCeEEEccCcCCEEe
Confidence 4678999999 32 1666657899999999874
No 38
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=90.33 E-value=0.086 Score=35.11 Aligned_cols=23 Identities=39% Similarity=0.766 Sum_probs=18.1
Q ss_pred ccccccCCceecCCCccCcCCCC
Q 033949 83 VSKCRFCDRLVEPDFSFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~~~~~fCP~CG~ 105 (107)
..+|.+||+..-+-..+||.||+
T Consensus 47 ~~rC~~CG~~~~PPr~~Cp~C~s 69 (145)
T 3irb_A 47 GSKCSKCGRIFVPARSYCEHCFV 69 (145)
T ss_dssp EEECTTTCCEEESCCSEETTTTE
T ss_pred EEEeCCCCcEEcCchhhCcCCCC
Confidence 45788888888887788888875
No 39
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=90.21 E-value=0.16 Score=28.72 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=20.7
Q ss_pred ECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 23 RCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 23 ~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
.||.||+ .+ -++.....+.|..||..++.
T Consensus 13 ~Cp~C~~~~l-----------------v~D~~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 13 TCPNHPDAIL-----------------VEDYRAGDMICPECGLVVGD 42 (58)
T ss_dssp SBTTBSSSCC-----------------EECSSSCCEECTTTCCEECC
T ss_pred cCcCCCCCce-----------------eEeCCCCeEEeCCCCCEEec
Confidence 6999988 42 13444578999999988754
No 40
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=90.01 E-value=0.14 Score=29.32 Aligned_cols=22 Identities=27% Similarity=0.792 Sum_probs=11.8
Q ss_pred ccccccCCceecCCCccCcCCCC
Q 033949 83 VSKCRFCDRLVEPDFSFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~~~~~fCP~CG~ 105 (107)
...||+||+... .-..||+||.
T Consensus 30 l~~c~~cGe~~~-~H~vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKAMKP-PHTVCPECGY 51 (60)
T ss_dssp CEECTTTCCEEC-TTSCCTTTCE
T ss_pred eeECCCCCCeec-ceEEcCCCCc
Confidence 345666666533 3344666663
No 41
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=88.54 E-value=0.27 Score=29.84 Aligned_cols=31 Identities=13% Similarity=0.554 Sum_probs=22.9
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFP 67 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~ 67 (107)
..++||.|++ .. =|+.....+.|..||..+.
T Consensus 31 m~VkCp~C~n~q~-----------------VFShA~t~V~C~~Cg~~L~ 62 (81)
T 2xzm_6 31 MDVKCAQCQNIQM-----------------IFSNAQSTIICEKCSAILC 62 (81)
T ss_dssp EEEECSSSCCEEE-----------------EETTCSSCEECSSSCCEEE
T ss_pred EEeECCCCCCeeE-----------------EEecCccEEEccCCCCEEe
Confidence 4678999999 32 1566656899999998863
No 42
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=88.42 E-value=0.31 Score=26.48 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=18.9
Q ss_pred ceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCce
Q 033949 56 ALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRL 92 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~ 92 (107)
...|+.||..++...-. +...+.......||.||+.
T Consensus 4 ~y~C~vCGyvyd~~~Gd-~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHD-NVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGT-TCCGGGSCTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCC-CcchhhCCCCCcCcCCCCc
Confidence 35799999888642211 0000000123578888875
No 43
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=88.42 E-value=0.1 Score=31.02 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=13.0
Q ss_pred CceeCCCCCCCCCCCCCC
Q 033949 55 PALFCNNCNLLFPSSLPP 72 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~ 72 (107)
....|| ||+.+.+.+..
T Consensus 20 kT~~C~-CG~~~~~~k~r 36 (71)
T 1gh9_A 20 KTRKCV-CGRTVNVKDRR 36 (71)
T ss_dssp SEEEET-TTEEEECCSSS
T ss_pred cEEECC-CCCeeeeceEE
Confidence 478898 99988776653
No 44
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=88.40 E-value=0.33 Score=33.12 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=8.5
Q ss_pred CceeCCCCCCCCC
Q 033949 55 PALFCNNCNLLFP 67 (107)
Q Consensus 55 ~~~~C~~CG~~~~ 67 (107)
....|+.||..++
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 4556777777665
No 45
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.96 E-value=0.94 Score=25.64 Aligned_cols=14 Identities=14% Similarity=0.451 Sum_probs=9.1
Q ss_pred CceeCCCCCCCCCC
Q 033949 55 PALFCNNCNLLFPS 68 (107)
Q Consensus 55 ~~~~C~~CG~~~~~ 68 (107)
....||.|+..++.
T Consensus 5 ~~k~CP~C~~~Iek 18 (60)
T 1wd2_A 5 NTKECPKCHVTIEK 18 (60)
T ss_dssp CCCCCTTTCCCCSS
T ss_pred cceECcCCCCeeEe
Confidence 44567777777655
No 46
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=87.85 E-value=0.2 Score=30.24 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=15.9
Q ss_pred ccccccCCceecC--CCc--cCcCCCC
Q 033949 83 VSKCRFCDRLVEP--DFS--FCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~~--~~~--fCP~CG~ 105 (107)
...|..|++.-.. .+. .||.||+
T Consensus 37 ~I~CnDC~~~s~v~~h~lg~kC~~C~S 63 (79)
T 2k2d_A 37 DILCNDCNGRSTVQFHILGMKCKICES 63 (79)
T ss_dssp EEEESSSCCEEEEECCTTCCCCTTTSC
T ss_pred EEECCCCCCCccCCceeecccCcCCCC
Confidence 3568888887655 333 6888886
No 47
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=87.70 E-value=0.34 Score=29.49 Aligned_cols=33 Identities=15% Similarity=0.415 Sum_probs=23.5
Q ss_pred CcEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 20 GAGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 20 ~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
..++||.|++.. .=|+.....+.|..||..+..
T Consensus 33 m~VkCp~C~~~q----------------~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 33 LDVKCPGCLNIT----------------TVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp EEEECTTSCSCE----------------EEESBCSSCCCCSSSCCCCEE
T ss_pred EEEECCCCCCee----------------EEEecCCeEEEccccCCEEec
Confidence 467899999921 115556568999999998743
No 48
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=87.42 E-value=0.23 Score=30.47 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=24.0
Q ss_pred CCcEECCCCCC--CcEEEEEeeEEEEEEEeeeecCC--CCCceeCCCCCCCCCC
Q 033949 19 SGAGRCINCGS--TADLVEYEKVLKAFFVPVWKWPA--KEPALFCNNCNLLFPS 68 (107)
Q Consensus 19 ~~~~~C~~Cg~--~~~~~~~~~~f~lFFIP~~~~~~--~~~~~~C~~CG~~~~~ 68 (107)
...+.||.||+ ++. ++ +++ ....+.|..||..++.
T Consensus 21 ~t~F~CPfCnh~~sV~-vk--------------idk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 21 ETQFTCPFCNHEKSCD-VK--------------MDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp SSCCCCTTTCCSSCEE-EE--------------EETTTTEEEEEESSSCCEEEE
T ss_pred CCeEcCCCCCCCCeEE-EE--------------EEccCCEEEEEcccCCCeEEe
Confidence 35678999999 343 22 322 2358999999998854
No 49
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=87.34 E-value=0.19 Score=36.46 Aligned_cols=37 Identities=24% Similarity=0.536 Sum_probs=24.6
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSL 70 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~ 70 (107)
.+.-||+||+ ..+.++. ++..-.-+|++|++.|++..
T Consensus 33 ~n~yCPnCG~~~l~~f~n--------------N~PVaDF~C~~C~EeyELKS 70 (257)
T 4esj_A 33 RQSYCPNCGNNPLNHFEN--------------NRPVADFYCNHCSEEFELKS 70 (257)
T ss_dssp HHCCCTTTCCSSCEEC------------------CCCEEECTTTCCEEEEEE
T ss_pred HCCcCCCCCChhhhhccC--------------CCcccccccCCcchhheecc
Confidence 4677999999 5543332 33334678999999998744
No 50
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=87.28 E-value=0.19 Score=33.55 Aligned_cols=23 Identities=39% Similarity=0.766 Sum_probs=17.4
Q ss_pred ccccccCCceecCCCccCcCCCC
Q 033949 83 VSKCRFCDRLVEPDFSFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~~~~~fCP~CG~ 105 (107)
..+|.+||+..-+-..+||.||+
T Consensus 47 ~~rC~~CG~~~fPPr~~Cp~C~s 69 (145)
T 2gnr_A 47 GSKCSKCGRIFVPARSYCEHCFV 69 (145)
T ss_dssp EEECTTTCCEEESCCSEETTTTE
T ss_pred EEEECCCCcEEeCCCCCCCCCCC
Confidence 45688888877777777888875
No 51
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=87.14 E-value=0.45 Score=29.18 Aligned_cols=31 Identities=16% Similarity=0.513 Sum_probs=23.9
Q ss_pred cEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 21 AGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 21 ~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
.++||.|++ .. =|+.....+.|..||..+..
T Consensus 36 ~VkCp~C~~~~~-----------------VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 36 DVKCQGCFNITT-----------------VFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EEECTTTCCEEE-----------------EETTCSSCCCCSSSCCCCSC
T ss_pred EEECCCCCCeeE-----------------EEecCCcEEEccCCCCEeec
Confidence 578999999 32 15666579999999998854
No 52
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=86.63 E-value=0.31 Score=33.21 Aligned_cols=23 Identities=30% Similarity=0.803 Sum_probs=12.3
Q ss_pred ccccccCCceecC-CCccCcCCCC
Q 033949 83 VSKCRFCDRLVEP-DFSFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~~-~~~fCP~CG~ 105 (107)
...|++||...+. ....||-||.
T Consensus 138 ~~~C~~CG~i~~~~~p~~CP~Cg~ 161 (170)
T 3pwf_A 138 VYICPICGYTAVDEAPEYCPVCGA 161 (170)
T ss_dssp EEECTTTCCEEESCCCSBCTTTCC
T ss_pred eeEeCCCCCeeCCCCCCCCCCCCC
Confidence 3456666665433 2346666664
No 53
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=86.26 E-value=0.17 Score=32.74 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=23.3
Q ss_pred EECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCC
Q 033949 22 GRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSL 70 (107)
Q Consensus 22 ~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~ 70 (107)
.-||.||+.+.+.+.. ..+...+.|+.||+..+++.
T Consensus 5 ~FCp~CgnlL~~~~~~-------------~~~~~~~~C~~C~y~~~~~~ 40 (122)
T 1twf_I 5 RFCRDCNNMLYPREDK-------------ENNRLLFECRTCSYVEEAGS 40 (122)
T ss_dssp CBCSSSCCBCEEEEET-------------TTTEEEEECSSSSCEEECSC
T ss_pred CcccccCccCcccccC-------------cCCCCEEECCcCCCeeecCc
Confidence 4599999954222210 12235899999999887654
No 54
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=86.20 E-value=0.18 Score=29.71 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=24.3
Q ss_pred cEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCC
Q 033949 21 AGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSL 70 (107)
Q Consensus 21 ~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~ 70 (107)
...||.|++... ++...+.+.|+.||..|++..
T Consensus 8 iL~CP~ck~~L~-----------------~~~~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 8 ILACPICKGPLK-----------------LSADKTELISKGAGLAYPIRD 40 (69)
T ss_dssp TCCCTTTCCCCE-----------------ECTTSSEEEETTTTEEEEEET
T ss_pred heeCCCCCCcCe-----------------EeCCCCEEEcCCCCcEecCcC
Confidence 446999999542 344457899999999998754
No 55
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=85.97 E-value=0.17 Score=37.76 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=21.7
Q ss_pred ccccccCCceecCCCccCcCCCCC
Q 033949 83 VSKCRFCDRLVEPDFSFCPYCGSA 106 (107)
Q Consensus 83 ~~~C~~CG~~i~~~~~fCP~CG~~ 106 (107)
..+|.-||++=...-.-||+||+.
T Consensus 208 ~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 208 YLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEETTTCCEEECCTTSCSSSCCC
T ss_pred EEEeCCCCCEEeecCcCCcCCCCC
Confidence 478999999999999999999974
No 56
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=85.60 E-value=0.52 Score=29.97 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=6.6
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.|+++-..
T Consensus 85 srCP~CkSe~Ie 96 (105)
T 2gmg_A 85 SRCPKCKSEWIE 96 (105)
T ss_dssp SSCSSSCCCCBC
T ss_pred CCCcCCCCCccC
Confidence 356666665443
No 57
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=85.19 E-value=0.15 Score=30.05 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=24.6
Q ss_pred cEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCC
Q 033949 21 AGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSL 70 (107)
Q Consensus 21 ~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~ 70 (107)
-..||.|++... ++...+.+.|+.||..|++..
T Consensus 8 iL~CP~ck~~L~-----------------~~~~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 8 ILVCPVCKGRLE-----------------FQRAQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CCBCTTTCCBEE-----------------EETTTTEEEETTTTEEEEEET
T ss_pred heECCCCCCcCE-----------------EeCCCCEEEcCCCCceecCCC
Confidence 457999999543 233457999999999998754
No 58
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=85.16 E-value=0.16 Score=29.82 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=23.6
Q ss_pred EECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCC
Q 033949 22 GRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSL 70 (107)
Q Consensus 22 ~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~ 70 (107)
..||.|++..+ +....+.+.|+.||..|++..
T Consensus 9 L~CP~ck~~L~-----------------~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 9 LVCPLCKGPLV-----------------FDKSKDELICKGDRLAFPIKD 40 (68)
T ss_dssp CBCTTTCCBCE-----------------EETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCe-----------------EeCCCCEEEcCCCCcEecCCC
Confidence 46999999543 223457899999999998754
No 59
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=84.96 E-value=0.29 Score=25.08 Aligned_cols=30 Identities=20% Similarity=0.548 Sum_probs=18.2
Q ss_pred EECCCCCCC-cEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCC
Q 033949 22 GRCINCGST-ADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLF 66 (107)
Q Consensus 22 ~~C~~Cg~~-~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~ 66 (107)
+.|+.|++. -++.+ ..+...+.|..||+.-
T Consensus 1 VlC~~C~~peT~l~~---------------~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 1 VICRECGKPDTKIIK---------------EGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCCSSSCSCEEEEEE---------------ETTEEEEEEETTTEEE
T ss_pred CCCcCCCCCCcEEEE---------------eCCcEEEEhhcCCCcc
Confidence 368999993 22222 1233577788888754
No 60
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=84.95 E-value=0.16 Score=29.79 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=24.3
Q ss_pred cEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCC
Q 033949 21 AGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSL 70 (107)
Q Consensus 21 ~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~ 70 (107)
-..||.|++..+ +....+.+.|+.||..|++..
T Consensus 8 iL~CP~ck~~L~-----------------~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 8 ILVCPVTKGRLE-----------------YHQDKQELWSRQAKLAYPIKD 40 (68)
T ss_dssp CCBCSSSCCBCE-----------------EETTTTEEEETTTTEEEEEET
T ss_pred heECCCCCCcCe-----------------EeCCCCEEEcCCCCcEecCCC
Confidence 457999999543 223457899999999998754
No 61
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=84.41 E-value=0.85 Score=28.97 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=13.3
Q ss_pred ccccccCCceecC---CCccCcCCCCC
Q 033949 83 VSKCRFCDRLVEP---DFSFCPYCGSA 106 (107)
Q Consensus 83 ~~~C~~CG~~i~~---~~~fCP~CG~~ 106 (107)
...|.+||..... ....||.|++.
T Consensus 67 p~~C~~CG~~F~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 67 PAQCRKCGFVFKAEINIPSRCPKCKSE 93 (105)
T ss_dssp CCBBTTTCCBCCCCSSCCSSCSSSCCC
T ss_pred CcChhhCcCeecccCCCCCCCcCCCCC
Confidence 3556666666521 34566666653
No 62
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=84.37 E-value=0.47 Score=28.79 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=20.9
Q ss_pred CceeCCCCCCCCCCCCCC--CCCC----CCCccCccccccCCce
Q 033949 55 PALFCNNCNLLFPSSLPP--PPPP----PPLVSDVSKCRFCDRL 92 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~--~~~~----~~~~~~~~~C~~CG~~ 92 (107)
....|+.||..|+...-. ..|. ++.......||-||+.
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 467899999888653310 0010 0101134579999885
No 63
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=84.21 E-value=0.77 Score=25.38 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=21.4
Q ss_pred ceeCCCCCCCCCCCCCC--CCCC----CCCccCccccccCCce
Q 033949 56 ALFCNNCNLLFPSSLPP--PPPP----PPLVSDVSKCRFCDRL 92 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~~--~~~~----~~~~~~~~~C~~CG~~ 92 (107)
...|+.||..|+...-. ..|. .+.....-.||.||+.
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 46899999999763311 0111 0111134579999986
No 64
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=84.10 E-value=0.68 Score=25.91 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=21.4
Q ss_pred ceeCCCCCCCCCCCCCC--CCCC----CCCccCccccccCCce
Q 033949 56 ALFCNNCNLLFPSSLPP--PPPP----PPLVSDVSKCRFCDRL 92 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~~--~~~~----~~~~~~~~~C~~CG~~ 92 (107)
...|+.||..|+...-. ..|. .+.....-.||.||+.
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 35799999999764321 0010 0111135689999986
No 65
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=83.92 E-value=0.44 Score=28.24 Aligned_cols=12 Identities=50% Similarity=1.442 Sum_probs=10.2
Q ss_pred CCccCcCCCCCC
Q 033949 96 DFSFCPYCGSAL 107 (107)
Q Consensus 96 ~~~fCP~CG~~l 107 (107)
+++.||||+++|
T Consensus 29 s~NiCPYC~nRl 40 (77)
T 2l7x_A 29 SYNICPYCASRL 40 (77)
T ss_dssp TTTCCTTTCCCC
T ss_pred CcccChhhhccC
Confidence 788899999876
No 66
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=83.87 E-value=0.48 Score=27.87 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=21.8
Q ss_pred CceeCCCCCCCCCCCCCC--CCCCC----CCccCccccccCCce
Q 033949 55 PALFCNNCNLLFPSSLPP--PPPPP----PLVSDVSKCRFCDRL 92 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~--~~~~~----~~~~~~~~C~~CG~~ 92 (107)
....|+.||..++...-. ..|.. +.....-.||-||+.
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 467899999998764311 01110 001134579999986
No 67
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=83.63 E-value=0.53 Score=32.87 Aligned_cols=11 Identities=18% Similarity=0.612 Sum_probs=5.5
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...|+.||..+
T Consensus 171 ~~~C~~CG~i~ 181 (202)
T 1yuz_A 171 FHLCPICGYIH 181 (202)
T ss_dssp EEECSSSCCEE
T ss_pred EEEECCCCCEE
Confidence 44455555554
No 68
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.59 E-value=1.1 Score=26.71 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=6.8
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
.-.|..||..+
T Consensus 30 rHHCR~CG~vf 40 (84)
T 1x4u_A 30 RRSCSNCGNSF 40 (84)
T ss_dssp CEECSSSCCEE
T ss_pred hhhhcCCCcEE
Confidence 45666666655
No 69
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=83.52 E-value=0.66 Score=27.32 Aligned_cols=10 Identities=20% Similarity=0.803 Sum_probs=5.0
Q ss_pred ceeCCCCCCC
Q 033949 56 ALFCNNCNLL 65 (107)
Q Consensus 56 ~~~C~~CG~~ 65 (107)
.+.|..|...
T Consensus 11 ~~AC~~C~~~ 20 (69)
T 1ryq_A 11 EKACRHCHYI 20 (69)
T ss_dssp CEEETTTCBE
T ss_pred hhhHHhCCcc
Confidence 3455555553
No 70
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=83.45 E-value=0.4 Score=33.11 Aligned_cols=11 Identities=27% Similarity=0.754 Sum_probs=5.8
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...|+.||..+
T Consensus 155 ~~~C~~CG~~~ 165 (191)
T 1lko_A 155 KWRCRNCGYVH 165 (191)
T ss_dssp EEEETTTCCEE
T ss_pred eEEECCCCCEe
Confidence 34455555554
No 71
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=83.38 E-value=0.85 Score=27.20 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=5.3
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...|..||..+
T Consensus 35 rHHCR~CG~v~ 45 (82)
T 2yw8_A 35 KHHCRNCGHIF 45 (82)
T ss_dssp CEECTTTCCEE
T ss_pred cccCCCCCCEE
Confidence 34455555443
No 72
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=83.04 E-value=0.44 Score=34.63 Aligned_cols=10 Identities=20% Similarity=0.551 Sum_probs=4.7
Q ss_pred cccccCCcee
Q 033949 84 SKCRFCDRLV 93 (107)
Q Consensus 84 ~~C~~CG~~i 93 (107)
..|++|+.+.
T Consensus 57 F~C~~C~Eey 66 (257)
T 4esj_A 57 FYCNHCSEEF 66 (257)
T ss_dssp EECTTTCCEE
T ss_pred cccCCcchhh
Confidence 3455555443
No 73
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=82.79 E-value=1.2 Score=26.62 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=6.3
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...|..||..+
T Consensus 37 rHHCR~CG~v~ 47 (84)
T 1z2q_A 37 RHHCRNCGYVL 47 (84)
T ss_dssp CEECTTTCCEE
T ss_pred cccccCCCcEE
Confidence 45566666554
No 74
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=82.64 E-value=0.79 Score=25.64 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=20.9
Q ss_pred ceeCCCCCCCCCCCCCC--CCCCC----CCccCccccccCCce
Q 033949 56 ALFCNNCNLLFPSSLPP--PPPPP----PLVSDVSKCRFCDRL 92 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~~--~~~~~----~~~~~~~~C~~CG~~ 92 (107)
...|+.||..++...-. ..|.. +.....-.||.||+.
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 46799999999763311 01110 001134579999986
No 75
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=82.62 E-value=1.2 Score=21.62 Aligned_cols=24 Identities=21% Similarity=0.615 Sum_probs=18.2
Q ss_pred cccccCCceecCCCccCcCCCCCC
Q 033949 84 SKCRFCDRLVEPDFSFCPYCGSAL 107 (107)
Q Consensus 84 ~~C~~CG~~i~~~~~fCP~CG~~l 107 (107)
-.|+.|.....+....|-.||.++
T Consensus 7 W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 7 WACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp EECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccCCcccccCCCCCCccCCcCCCC
Confidence 458888888788888888887753
No 76
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=82.42 E-value=0.52 Score=30.52 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=6.7
Q ss_pred ceeCCCCCCCCCC
Q 033949 56 ALFCNNCNLLFPS 68 (107)
Q Consensus 56 ~~~C~~CG~~~~~ 68 (107)
...|..|+..+..
T Consensus 19 ~~~C~~C~~~Fs~ 31 (120)
T 1y02_A 19 EPSCKSCGAHFAN 31 (120)
T ss_dssp -CCCTTTCCCCSS
T ss_pred cCcccCcCCcccc
Confidence 3456666666543
No 77
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=82.03 E-value=0.86 Score=22.58 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=5.6
Q ss_pred CceeCCCCCCC
Q 033949 55 PALFCNNCNLL 65 (107)
Q Consensus 55 ~~~~C~~CG~~ 65 (107)
+...|+.||..
T Consensus 4 gDW~C~~C~~~ 14 (32)
T 2lk0_A 4 EDWLCNKCCLN 14 (32)
T ss_dssp SEEECTTTCCE
T ss_pred CCCCcCcCcCC
Confidence 34555555554
No 78
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=81.67 E-value=0.27 Score=28.77 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=24.4
Q ss_pred cEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCC
Q 033949 21 AGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSL 70 (107)
Q Consensus 21 ~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~ 70 (107)
-..||.|++... ++...+.+.|+.||..|++..
T Consensus 10 iL~CP~ck~~L~-----------------~~~~~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 10 VLACPKDKGPLR-----------------YLESEQLLVNERLNLAYRIDD 42 (67)
T ss_dssp CCBCTTTCCBCE-----------------EETTTTEEEETTTTEEEEEET
T ss_pred HhCCCCCCCcCe-----------------EeCCCCEEEcCCCCccccCCC
Confidence 457999999543 233457899999999998754
No 79
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=80.33 E-value=0.77 Score=30.37 Aligned_cols=14 Identities=21% Similarity=0.581 Sum_probs=9.3
Q ss_pred CCceeCCCCCCCCC
Q 033949 54 EPALFCNNCNLLFP 67 (107)
Q Consensus 54 ~~~~~C~~CG~~~~ 67 (107)
+..+.||.|+....
T Consensus 42 g~l~vCPeC~hEW~ 55 (138)
T 2akl_A 42 GALLVCPECAHEWS 55 (138)
T ss_dssp SSSEEETTTTEEEC
T ss_pred CCeEECCccccccC
Confidence 35677777777663
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.23 E-value=2.3 Score=26.29 Aligned_cols=10 Identities=30% Similarity=0.833 Sum_probs=5.0
Q ss_pred ceeCCCCCCC
Q 033949 56 ALFCNNCNLL 65 (107)
Q Consensus 56 ~~~C~~CG~~ 65 (107)
++.|..|+..
T Consensus 35 FVAC~eC~FP 44 (93)
T 1weo_A 35 FVACNECGFP 44 (93)
T ss_dssp CCSCSSSCCC
T ss_pred EEeeeccCCh
Confidence 4555555544
No 81
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=80.20 E-value=1.3 Score=31.53 Aligned_cols=12 Identities=17% Similarity=0.636 Sum_probs=8.2
Q ss_pred CceeCCCCCCCC
Q 033949 55 PALFCNNCNLLF 66 (107)
Q Consensus 55 ~~~~C~~CG~~~ 66 (107)
+.+.|+.|+..+
T Consensus 192 ~g~~C~~C~~~~ 203 (238)
T 3nw0_A 192 QGQSCETCGIRM 203 (238)
T ss_dssp SCEECSSSCCEE
T ss_pred CCcccCccChHH
Confidence 457777777666
No 82
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=80.19 E-value=1.1 Score=28.98 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=5.1
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...|..|+..+
T Consensus 69 ~~~C~~C~~~F 79 (125)
T 1joc_A 69 VQNCMACGKGF 79 (125)
T ss_dssp CCBCTTTCCBC
T ss_pred CCCCcCcCCcc
Confidence 33444444444
No 83
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.61 E-value=1.1 Score=24.83 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=7.5
Q ss_pred CcEECCCCCCC
Q 033949 20 GAGRCINCGST 30 (107)
Q Consensus 20 ~~~~C~~Cg~~ 30 (107)
....|+-|...
T Consensus 14 ~~~~C~IC~~~ 24 (66)
T 2ecy_A 14 DKYKCEKCHLV 24 (66)
T ss_dssp CCEECTTTCCE
T ss_pred cCCCCCCCChH
Confidence 45678888773
No 84
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.39 E-value=4.7 Score=23.15 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=20.3
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..+..+.......+. ....-..|..|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 55 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLAD 55 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSS
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCC
Confidence 345677777776532221111111 12234567777777654
No 85
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=79.22 E-value=1.1 Score=27.19 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=5.6
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...|..|+...
T Consensus 23 ~rAC~~C~~v~ 33 (81)
T 3p8b_A 23 EKACRHCHYIT 33 (81)
T ss_dssp CEEETTTCBEE
T ss_pred HHHHhhCCCcc
Confidence 34455555553
No 86
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=78.76 E-value=1.5 Score=24.29 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=6.8
Q ss_pred cEECCCCCC
Q 033949 21 AGRCINCGS 29 (107)
Q Consensus 21 ~~~C~~Cg~ 29 (107)
.+.||.||+
T Consensus 15 ~~~Cp~Cg~ 23 (57)
T 1qyp_A 15 KITCPKCGN 23 (57)
T ss_dssp ECCCTTTCC
T ss_pred EeECCCCCC
Confidence 456888888
No 87
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=78.41 E-value=1.6 Score=25.85 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=20.9
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
....||.||. .+ -........|..||..+.-
T Consensus 25 ~ky~C~fCgk~~v------------------kR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 25 ARYDCSFCGKKTV------------------KRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp SCBCCSSCCSSCB------------------SBCSSSCBCCSSSCCCCCC
T ss_pred cCccCCCCCCcee------------------EecCCCeEECCCCCCEEeC
Confidence 4567999998 43 0113457889999988743
No 88
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=78.06 E-value=0.4 Score=33.11 Aligned_cols=8 Identities=63% Similarity=1.240 Sum_probs=4.3
Q ss_pred EECCCCCC
Q 033949 22 GRCINCGS 29 (107)
Q Consensus 22 ~~C~~Cg~ 29 (107)
..|+.||.
T Consensus 156 ~~C~~CG~ 163 (191)
T 1lko_A 156 WRCRNCGY 163 (191)
T ss_dssp EEETTTCC
T ss_pred EEECCCCC
Confidence 44555555
No 89
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=78.06 E-value=2.1 Score=22.60 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=9.1
Q ss_pred ccCCceecCCCccCcCCCCC
Q 033949 87 RFCDRLVEPDFSFCPYCGSA 106 (107)
Q Consensus 87 ~~CG~~i~~~~~fCP~CG~~ 106 (107)
..|-.........||.|.++
T Consensus 33 ~~Ci~~w~~~~~~CP~Cr~~ 52 (55)
T 1iym_A 33 AECVDMWLGSHSTCPLCRLT 52 (55)
T ss_dssp TTHHHHTTTTCCSCSSSCCC
T ss_pred HHHHHHHHHcCCcCcCCCCE
Confidence 33333333344456666554
No 90
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=77.85 E-value=0.54 Score=27.73 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=9.1
Q ss_pred ccccccCCceecC
Q 033949 83 VSKCRFCDRLVEP 95 (107)
Q Consensus 83 ~~~C~~CG~~i~~ 95 (107)
...|++||+.+-.
T Consensus 36 ~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 36 GLYCVHCEESIMN 48 (78)
T ss_dssp EEEETTTCCEECC
T ss_pred eEECCCCCCEEEC
Confidence 5678888877643
No 91
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=76.65 E-value=1.4 Score=24.30 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=20.7
Q ss_pred ceeCCCCCCCCCCCCCC--CCCC----CCCccCccccccCCce
Q 033949 56 ALFCNNCNLLFPSSLPP--PPPP----PPLVSDVSKCRFCDRL 92 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~~--~~~~----~~~~~~~~~C~~CG~~ 92 (107)
...|+.||..|+...-. ..|. .+.....-.||.||+.
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 35799999999764211 0010 0001134579999985
No 92
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=76.58 E-value=1.9 Score=21.46 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=6.4
Q ss_pred CceeCCCCCCC
Q 033949 55 PALFCNNCNLL 65 (107)
Q Consensus 55 ~~~~C~~CG~~ 65 (107)
....|+.||..
T Consensus 5 gDW~C~~C~~~ 15 (33)
T 2k1p_A 5 NDWQCKTCSNV 15 (33)
T ss_dssp SSCBCSSSCCB
T ss_pred CCcccCCCCCc
Confidence 45566666654
No 93
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=76.55 E-value=2.7 Score=28.03 Aligned_cols=9 Identities=44% Similarity=1.276 Sum_probs=4.9
Q ss_pred eCCCCCCCC
Q 033949 58 FCNNCNLLF 66 (107)
Q Consensus 58 ~C~~CG~~~ 66 (107)
.|++||..+
T Consensus 73 ~C~~Cg~~f 81 (143)
T 2dkt_A 73 TCEDCSTLF 81 (143)
T ss_dssp BCSSSCCBS
T ss_pred cCCCCCccc
Confidence 455555554
No 94
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=76.42 E-value=0.6 Score=34.04 Aligned_cols=21 Identities=29% Similarity=0.906 Sum_probs=15.5
Q ss_pred cccccCCceecC------CCccCcCCC
Q 033949 84 SKCRFCDRLVEP------DFSFCPYCG 104 (107)
Q Consensus 84 ~~C~~CG~~i~~------~~~fCP~CG 104 (107)
..|+.||..|.. +.-|||.|-
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 468888888764 577888884
No 95
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=75.85 E-value=1.1 Score=31.15 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=13.4
Q ss_pred ccccccCCceecCCC-ccCcCCCC
Q 033949 83 VSKCRFCDRLVEPDF-SFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~~~~-~fCP~CG~ 105 (107)
...|++||...+..+ ..||-||.
T Consensus 171 ~~~C~~CG~i~~g~~p~~CP~C~~ 194 (202)
T 1yuz_A 171 FHLCPICGYIHKGEDFEKCPICFR 194 (202)
T ss_dssp EEECSSSCCEEESSCCSBCTTTCC
T ss_pred EEEECCCCCEEcCcCCCCCCCCCC
Confidence 456666666655433 46666665
No 96
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=75.68 E-value=0.65 Score=33.75 Aligned_cols=21 Identities=24% Similarity=0.725 Sum_probs=16.4
Q ss_pred cccccCCceecC------CCccCcCCC
Q 033949 84 SKCRFCDRLVEP------DFSFCPYCG 104 (107)
Q Consensus 84 ~~C~~CG~~i~~------~~~fCP~CG 104 (107)
..|+.||..|.. +.-|||.|-
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 568889888865 677899884
No 97
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.60 E-value=1.6 Score=26.43 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=6.4
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...|..||..+
T Consensus 36 rhhCr~CG~v~ 46 (90)
T 3t7l_A 36 RHHCRACGKVF 46 (90)
T ss_dssp CEECTTTCCEE
T ss_pred CccccCCCCEE
Confidence 45566666554
No 98
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=75.53 E-value=0.66 Score=33.71 Aligned_cols=22 Identities=41% Similarity=0.886 Sum_probs=15.6
Q ss_pred cccccCCceecC------CCccCcCCCC
Q 033949 84 SKCRFCDRLVEP------DFSFCPYCGS 105 (107)
Q Consensus 84 ~~C~~CG~~i~~------~~~fCP~CG~ 105 (107)
..|+.||..|.. +.-|||.|-.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 568888887764 5668888853
No 99
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=75.50 E-value=0.66 Score=33.57 Aligned_cols=21 Identities=33% Similarity=0.986 Sum_probs=14.5
Q ss_pred cccccCCceecC------CCccCcCCC
Q 033949 84 SKCRFCDRLVEP------DFSFCPYCG 104 (107)
Q Consensus 84 ~~C~~CG~~i~~------~~~fCP~CG 104 (107)
..|+.||..|.. +.-|||.|-
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 357777777755 566788774
No 100
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=75.42 E-value=0.69 Score=29.90 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=21.8
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
....||.||. ++ .+ . ......|+.||..+.-
T Consensus 59 akytCPfCGk~~v--KR--------------~--avGIW~C~~Cgk~fAG 90 (116)
T 3cc2_Z 59 EDHACPNCGEDRV--DR--------------Q--GTGIWQCSYCDYKFTG 90 (116)
T ss_dssp SCEECSSSCCEEE--EE--------------E--ETTEEEETTTCCEEEC
T ss_pred cCCcCCCCCCcee--Ee--------------c--CceeEECCCCCCEEEC
Confidence 4678999998 32 11 1 2368999999998644
No 101
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=75.35 E-value=3 Score=22.67 Aligned_cols=10 Identities=20% Similarity=0.394 Sum_probs=6.9
Q ss_pred CcEECCCCCC
Q 033949 20 GAGRCINCGS 29 (107)
Q Consensus 20 ~~~~C~~Cg~ 29 (107)
..+.||.||+
T Consensus 8 ~~~~Cp~Cg~ 17 (50)
T 1tfi_A 8 DLFTCGKCKK 17 (50)
T ss_dssp CCSCCSSSCS
T ss_pred CccCCCCCCC
Confidence 3456888887
No 102
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=74.99 E-value=1.1 Score=24.50 Aligned_cols=19 Identities=26% Similarity=0.915 Sum_probs=14.6
Q ss_pred ccccccCCceecCC-----CccCc
Q 033949 83 VSKCRFCDRLVEPD-----FSFCP 101 (107)
Q Consensus 83 ~~~C~~CG~~i~~~-----~~fCP 101 (107)
..+|+.||.++..+ -+||.
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS 41 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCS 41 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCS
T ss_pred CCcChhccCccccccCCCCCccCC
Confidence 46799999998863 67775
No 103
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=74.42 E-value=1.7 Score=22.01 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=7.3
Q ss_pred CcEECCCCCCCc
Q 033949 20 GAGRCINCGSTA 31 (107)
Q Consensus 20 ~~~~C~~Cg~~~ 31 (107)
+-.+|+.|||-+
T Consensus 5 ~fY~C~~CGniv 16 (36)
T 1dxg_A 5 DVYKCELCGQVV 16 (36)
T ss_dssp CEEECTTTCCEE
T ss_pred cEEEcCCCCcEE
Confidence 345677777733
No 104
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.78 E-value=1.1 Score=25.15 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=6.7
Q ss_pred CcEECCCCCCC
Q 033949 20 GAGRCINCGST 30 (107)
Q Consensus 20 ~~~~C~~Cg~~ 30 (107)
....|+-|...
T Consensus 19 ~~~~C~IC~~~ 29 (73)
T 2ysl_A 19 EEVICPICLDI 29 (73)
T ss_dssp CCCBCTTTCSB
T ss_pred cCCEeccCCcc
Confidence 34567777763
No 105
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=73.44 E-value=0.94 Score=32.89 Aligned_cols=22 Identities=32% Similarity=0.868 Sum_probs=16.4
Q ss_pred cccccCCceecC------CCccCcCCCC
Q 033949 84 SKCRFCDRLVEP------DFSFCPYCGS 105 (107)
Q Consensus 84 ~~C~~CG~~i~~------~~~fCP~CG~ 105 (107)
..|+.||..|.. +.-|||.|-.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 568888888765 5678888854
No 106
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=73.11 E-value=2.5 Score=31.45 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=21.5
Q ss_pred cEECCCCCCCc-EEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 21 AGRCINCGSTA-DLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 21 ~~~C~~Cg~~~-~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
...||+||..- . +-.+...+.+.|..||..++.
T Consensus 21 ~~~Cp~Cg~~~~~---------------iv~D~~~G~~vC~~CG~Vl~e 54 (345)
T 3k7a_M 21 VLTCPECKVYPPK---------------IVERFSEGDVVCALCGLVLSD 54 (345)
T ss_dssp CCCCSTTCCSCCC---------------CCCCSSSCSCCCSSSCCCCCC
T ss_pred CCcCcCCCCCCCc---------------eEEECCCCCEecCCCCeEccc
Confidence 34699998831 1 113334578889999998854
No 107
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=72.97 E-value=1.8 Score=32.23 Aligned_cols=31 Identities=16% Similarity=0.522 Sum_probs=19.8
Q ss_pred ceeCCCCCCC---CCCCCCCCCCCCCCccCccccccCCceecC
Q 033949 56 ALFCNNCNLL---FPSSLPPPPPPPPLVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 56 ~~~C~~CG~~---~~~~~~~~~~~~~~~~~~~~C~~CG~~i~~ 95 (107)
...||.||.. +..+... ....|.+||..++.
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~---------G~~vC~~CG~Vl~e 54 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSE---------GDVVCALCGLVLSD 54 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSS---------CSCCCSSSCCCCCC
T ss_pred CCcCcCCCCCCCceEEECCC---------CCEecCCCCeEccc
Confidence 5679999885 2222211 24679999988764
No 108
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=71.92 E-value=1.6 Score=29.51 Aligned_cols=9 Identities=22% Similarity=0.670 Sum_probs=5.7
Q ss_pred ceeCCCCCC
Q 033949 56 ALFCNNCNL 64 (107)
Q Consensus 56 ~~~C~~CG~ 64 (107)
.+.|+.||.
T Consensus 78 ~~~c~~~~~ 86 (166)
T 3ir9_A 78 TTKCSVCGY 86 (166)
T ss_dssp EEEESSSSC
T ss_pred EEECCCCCc
Confidence 456666664
No 109
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=71.79 E-value=1.8 Score=32.48 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=11.6
Q ss_pred CCCCceeCCCCCCCCCCC
Q 033949 52 AKEPALFCNNCNLLFPSS 69 (107)
Q Consensus 52 ~~~~~~~C~~CG~~~~~~ 69 (107)
+....+.||.||+.+..+
T Consensus 274 ~g~~~v~Cp~cgA~y~~~ 291 (320)
T 3mkr_B 274 RGKPVEKCPLSGACYSPE 291 (320)
T ss_dssp TTSCCEECTTTCCEECGG
T ss_pred CCCCCccCCCCCCeechh
Confidence 344677777777777553
No 110
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=71.57 E-value=2.2 Score=24.19 Aligned_cols=9 Identities=22% Similarity=0.700 Sum_probs=6.0
Q ss_pred ccccCCcee
Q 033949 85 KCRFCDRLV 93 (107)
Q Consensus 85 ~C~~CG~~i 93 (107)
.|||||...
T Consensus 15 ~CpnC~~~t 23 (59)
T 3lpe_B 15 ICPICHSPT 23 (59)
T ss_dssp BCTTTCCBE
T ss_pred CCCCCCCCc
Confidence 477777654
No 111
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.56 E-value=1.4 Score=31.55 Aligned_cols=13 Identities=23% Similarity=0.874 Sum_probs=7.8
Q ss_pred ccccccCCceecC
Q 033949 83 VSKCRFCDRLVEP 95 (107)
Q Consensus 83 ~~~C~~CG~~i~~ 95 (107)
...||+||.-+..
T Consensus 222 Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 222 MITCPYCGRILYA 234 (256)
T ss_dssp CEECTTTCCEEEC
T ss_pred EEECCCCCeeEEe
Confidence 3567777666544
No 112
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=71.45 E-value=3.8 Score=24.17 Aligned_cols=6 Identities=50% Similarity=1.403 Sum_probs=2.9
Q ss_pred cCcCCC
Q 033949 99 FCPYCG 104 (107)
Q Consensus 99 fCP~CG 104 (107)
||..|+
T Consensus 60 FC~~C~ 65 (80)
T 2jmo_A 60 FCRECK 65 (80)
T ss_dssp EETTTT
T ss_pred eccccC
Confidence 455444
No 113
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.32 E-value=0.8 Score=26.00 Aligned_cols=12 Identities=25% Similarity=0.766 Sum_probs=6.8
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.|.+.+..
T Consensus 51 ~~CP~Cr~~~~~ 62 (72)
T 2djb_A 51 NRCPKCNIVVHQ 62 (72)
T ss_dssp SSCTTTCCCCCS
T ss_pred CcCCCcCcccCc
Confidence 356666665543
No 114
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=70.66 E-value=2.4 Score=24.05 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=8.9
Q ss_pred ccccccCCceecC
Q 033949 83 VSKCRFCDRLVEP 95 (107)
Q Consensus 83 ~~~C~~CG~~i~~ 95 (107)
...||.|++.+..
T Consensus 53 ~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 53 KSSCPVCGISYSF 65 (79)
T ss_dssp CCCCSSSCCCCCS
T ss_pred CCcCCCCCCcCCH
Confidence 4568888777654
No 115
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.62 E-value=0.99 Score=25.98 Aligned_cols=24 Identities=25% Similarity=0.690 Sum_probs=18.0
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNL 64 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~ 64 (107)
.-+.|..||+ ++. .+...|..||.
T Consensus 16 tH~lCrRCG~~syH---------------------~qK~~Ca~CGy 40 (62)
T 3j21_e 16 THIRCRRCGRVSYN---------------------VKKGYCAACGF 40 (62)
T ss_dssp CCCBCSSSCSBCEE---------------------TTTTEETTTCT
T ss_pred ceeeecccCcchhc---------------------cccccccccCC
Confidence 3467999999 652 36778999997
No 116
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=69.98 E-value=1.5 Score=31.71 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=16.1
Q ss_pred ccccccCCceecC----CCccCcCCCC
Q 033949 83 VSKCRFCDRLVEP----DFSFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~~----~~~fCP~CG~ 105 (107)
.+.|+.||+.+.. -...||.||.
T Consensus 107 ~~fC~~CG~~~~~~~~~~~~~C~~C~~ 133 (269)
T 1vk6_A 107 HKYCGYCGHEMYPSKTEWAMLCSHCRE 133 (269)
T ss_dssp TSBCTTTCCBEEECSSSSCEEESSSSC
T ss_pred CCccccCCCcCccCCCceeeeCCCCCC
Confidence 5678888877632 4667888875
No 117
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=69.81 E-value=1.2 Score=37.05 Aligned_cols=74 Identities=22% Similarity=0.409 Sum_probs=45.3
Q ss_pred cCCCcEECCCCCCCcEEEEEeeEEEEEEEeeeecCC--CCCceeCCCCCCCCCCCCCCCCCCCCCc--cCccccccCCce
Q 033949 17 LKSGAGRCINCGSTADLVEYEKVLKAFFVPVWKWPA--KEPALFCNNCNLLFPSSLPPPPPPPPLV--SDVSKCRFCDRL 92 (107)
Q Consensus 17 ~~~~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~--~~~~~~C~~CG~~~~~~~~~~~~~~~~~--~~~~~C~~CG~~ 92 (107)
..++..+|+.|-+... =|-++ +.+++-|++||=.|.|-.. .|++.+.+ ..-.-|+.|.+|
T Consensus 102 i~pD~a~C~~Cl~e~~---------------dp~~rry~ypF~nCt~CGPR~tii~~-lPYDR~~TsM~~F~mC~~C~~E 165 (772)
T 4g9i_A 102 IPPDIAICDDCLRELF---------------DPTNKRYMYPFIVCTNCGPRFTIIED-LPYDRENTTMKEFPMCDFCRSE 165 (772)
T ss_dssp CCCCCCCCHHHHHHHS---------------STTSTTTTCTTCCCTTSSCCGGGCCS-SSCCGGGSGGGGSCCCHHHHHH
T ss_pred cCCchhhhHHHHHHhc---------------CCCCCccCCccccCCCCCchhhhhhc-CCCCCCCCcCCCCCCChhHHHH
Confidence 3567778999977110 01122 2348889999999977442 23332211 123459999888
Q ss_pred ecC--------CCccCcCCCCC
Q 033949 93 VEP--------DFSFCPYCGSA 106 (107)
Q Consensus 93 i~~--------~~~fCP~CG~~ 106 (107)
-.. ...-||.||=+
T Consensus 166 Y~dp~dRRfhAqp~aC~~CGP~ 187 (772)
T 4g9i_A 166 YEDPLNRRYHAEPTACPVCGPS 187 (772)
T ss_dssp HHCSSSTTTTCTTCCCTTTSCC
T ss_pred hCCCCCCCCcCCCCCCccCCce
Confidence 644 45679999854
No 118
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=69.76 E-value=0.97 Score=36.61 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=2.6
Q ss_pred CceeCCCCCCC
Q 033949 55 PALFCNNCNLL 65 (107)
Q Consensus 55 ~~~~C~~CG~~ 65 (107)
..-.|+.||..
T Consensus 539 ~~~~C~~CGy~ 549 (605)
T 1h7b_A 539 PVDKCFTCGST 549 (605)
T ss_dssp CEEET------
T ss_pred CCccCcccCCc
Confidence 35556666654
No 119
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=69.64 E-value=0.99 Score=26.81 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=21.6
Q ss_pred CCcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 19 SGAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 19 ~~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
....+||.||. .+. + .......|.+|+..+.-
T Consensus 25 ~~ky~C~fCgk~~vk--R----------------~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 25 KKKYKCPVCGFPKLK--R----------------ASTSIWVCGHCGYKIAG 57 (73)
T ss_pred ccCccCCCCCCceeE--E----------------EEeEEEECCCCCcEEEC
Confidence 34667999998 431 0 02367899999998643
No 120
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=68.77 E-value=2.8 Score=28.00 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=12.2
Q ss_pred CCCceeCCCCCCCCCCCC
Q 033949 53 KEPALFCNNCNLLFPSSL 70 (107)
Q Consensus 53 ~~~~~~C~~CG~~~~~~~ 70 (107)
+...+.|..||+.-.++.
T Consensus 122 r~~~l~C~ACGa~~~V~~ 139 (148)
T 2d74_B 122 RFHFLKCEACGAETPIQH 139 (148)
T ss_dssp SSBCCCCSSSCCCCCCCC
T ss_pred CEEEEEecCCCCCccccc
Confidence 335778888888766543
No 121
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=68.44 E-value=0.26 Score=31.70 Aligned_cols=70 Identities=24% Similarity=0.624 Sum_probs=38.2
Q ss_pred cEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCCCCCCCCC------CCccCccccccCCceec
Q 033949 21 AGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSLPPPPPPP------PLVSDVSKCRFCDRLVE 94 (107)
Q Consensus 21 ~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~~~~~~~~------~~~~~~~~C~~CG~~i~ 94 (107)
...|.+||...+ |+|+-+.. ....|..||-.+.......++.. ........|.+||+...
T Consensus 5 ~~~C~~Cg~~~T-------------p~WRr~~~-g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~t 70 (115)
T 4hc9_A 5 GRECVNCGATST-------------PLWRRDGT-GHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTT 70 (115)
T ss_dssp -CCCTTTCCSCC-------------SSCEECTT-SCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCC
T ss_pred CCCCCCCCCccC-------------CcceECCC-CCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCc
Confidence 457999998221 44454444 46799999964432111111100 00113468999999876
Q ss_pred CCC-------ccCcCCC
Q 033949 95 PDF-------SFCPYCG 104 (107)
Q Consensus 95 ~~~-------~fCP~CG 104 (107)
+.| ..|..||
T Consensus 71 p~WRr~~~g~~lCNaCg 87 (115)
T 4hc9_A 71 TLWRRNANGDPVCNACG 87 (115)
T ss_dssp SSCEECTTSCEECHHHH
T ss_pred ceeEECCCCCCcchHHH
Confidence 633 3666665
No 122
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=67.91 E-value=2.5 Score=26.38 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=18.6
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLL 65 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~ 65 (107)
....|+.||+ .++ .+...|..||..
T Consensus 15 tH~lCrRCG~~sfH---------------------~qK~~CgkCGYp 40 (97)
T 2zkr_2 15 THTLCRRCGSKAYH---------------------LQKSTCGKCGYP 40 (97)
T ss_dssp CEECCTTTCSSCEE---------------------TTSCCBTTTCTT
T ss_pred CCCcCCCCCCccCc---------------------CccccCcccCCc
Confidence 4457999999 531 256799999985
No 123
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=67.68 E-value=2 Score=24.29 Aligned_cols=24 Identities=21% Similarity=0.711 Sum_probs=17.9
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNL 64 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~ 64 (107)
.-+.|.+||+ +++ .+...|..||.
T Consensus 16 tH~~CrRCG~~syH---------------------~qK~~Ca~CGy 40 (57)
T 1vq8_1 16 THTKCRRCGEKSYH---------------------TKKKVCSSCGF 40 (57)
T ss_dssp CEEECTTTCSEEEE---------------------TTTTEETTTCT
T ss_pred ccccccccCChhhh---------------------ccccccccccC
Confidence 3467999999 542 35778999998
No 124
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=67.16 E-value=0.99 Score=27.69 Aligned_cols=11 Identities=27% Similarity=0.597 Sum_probs=6.9
Q ss_pred CcEECCCCCCC
Q 033949 20 GAGRCINCGST 30 (107)
Q Consensus 20 ~~~~C~~Cg~~ 30 (107)
....||-|...
T Consensus 14 ~~~~C~IC~~~ 24 (108)
T 2ckl_A 14 PHLMCVLCGGY 24 (108)
T ss_dssp GGTBCTTTSSB
T ss_pred CcCCCccCChH
Confidence 34567777763
No 125
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=66.87 E-value=1.2 Score=37.09 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=44.3
Q ss_pred CCCcEECCCCCCCcEEEEEeeEEEEEEEeee-ecCC--CCCceeCCCCCCCCCCCCCCCCCCCCCc--cCccccccCCce
Q 033949 18 KSGAGRCINCGSTADLVEYEKVLKAFFVPVW-KWPA--KEPALFCNNCNLLFPSSLPPPPPPPPLV--SDVSKCRFCDRL 92 (107)
Q Consensus 18 ~~~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~-~~~~--~~~~~~C~~CG~~~~~~~~~~~~~~~~~--~~~~~C~~CG~~ 92 (107)
.++..+|+.|-+.. + |-++ +.++.-|++||=.|.|-+. .|++.+.+ ..-.-|+.|.+|
T Consensus 108 ~pD~a~C~~Cl~e~----------------~dp~~Rry~ypF~nCt~CGPR~tii~~-lPYDR~~TsM~~F~mC~~C~~E 170 (761)
T 3vth_A 108 SPDMGVCEDCLREL----------------KDPKDRRYRYPFINCTNCGPRFSIIED-IPYDRAKTSMKVFPMCEKCSRE 170 (761)
T ss_dssp CCCBCCCHHHHHHH----------------TCTTSTTTTCTTCCBTTBBCSGGGBCS-SSCCGGGBGGGGSCCCHHHHHH
T ss_pred CCCccccHHHHHHh----------------cCCCccccCCCcccCCCCCcchhhhcc-CCCCCCCCccccCCCCHHHHHH
Confidence 45677899997711 0 1222 2248889999999877442 23332211 134459999888
Q ss_pred ecC--------CCccCcCCCCC
Q 033949 93 VEP--------DFSFCPYCGSA 106 (107)
Q Consensus 93 i~~--------~~~fCP~CG~~ 106 (107)
-.. ...-||.||=+
T Consensus 171 Y~dp~~RRfhAqp~aC~~CGP~ 192 (761)
T 3vth_A 171 YHDPHDRRFHAQPVACFDCGPS 192 (761)
T ss_dssp HTCTTSTTTTCTTCCCTTTSCC
T ss_pred hcCcccccccCCCCcCCccCCe
Confidence 755 34559999854
No 126
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=66.72 E-value=1.6 Score=26.16 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=6.3
Q ss_pred cEECCCCCCC
Q 033949 21 AGRCINCGST 30 (107)
Q Consensus 21 ~~~C~~Cg~~ 30 (107)
...|+-|...
T Consensus 22 ~~~C~IC~~~ 31 (99)
T 2y43_A 22 LLRCGICFEY 31 (99)
T ss_dssp HTBCTTTCSB
T ss_pred CCCcccCChh
Confidence 3467777763
No 127
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.68 E-value=3 Score=23.71 Aligned_cols=7 Identities=29% Similarity=0.876 Sum_probs=3.6
Q ss_pred ECCCCCC
Q 033949 23 RCINCGS 29 (107)
Q Consensus 23 ~C~~Cg~ 29 (107)
.|+.|+.
T Consensus 7 ~C~~C~~ 13 (73)
T 1wig_A 7 GCDSCEK 13 (73)
T ss_dssp SCSSSCC
T ss_pred CcccCCC
Confidence 3555555
No 128
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.19 E-value=2.6 Score=22.75 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=21.2
Q ss_pred CCcEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCC
Q 033949 19 SGAGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSL 70 (107)
Q Consensus 19 ~~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~ 70 (107)
.....|+.||........ +.. .....|+.||..+....
T Consensus 16 ~~~~~C~~C~k~f~~~~~-------------l~~-~~~~~C~~C~~~f~~~~ 53 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRST-------------LSR-RKTPMCEKCRKDSCQEA 53 (73)
T ss_dssp CSEEECSSSCCEEECCCC-------------CCC-SSSCCCHHHHHTCSCCC
T ss_pred CCCeeCCcccchhCCHHH-------------hCc-CCCCCCCCCChhhcCHH
Confidence 356789999983211000 000 23467888888875533
No 129
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.84 E-value=5.3 Score=24.06 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=7.5
Q ss_pred CceeCCCCCCCC
Q 033949 55 PALFCNNCNLLF 66 (107)
Q Consensus 55 ~~~~C~~CG~~~ 66 (107)
-...|..||..+
T Consensus 24 RrHHCR~CG~vf 35 (88)
T 1wfk_A 24 KEYGCKNCGRAF 35 (88)
T ss_dssp CEEECSSSCCEE
T ss_pred ccccCCCCCCEE
Confidence 346677777665
No 130
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=65.29 E-value=1.1 Score=36.66 Aligned_cols=73 Identities=22% Similarity=0.444 Sum_probs=45.2
Q ss_pred cCCCcEECCCCCCCcEEEEEeeEEEEEEEeee-ecCC--CCCceeCCCCCCCCCCCCCCCCCCCCCc--cCccccccCCc
Q 033949 17 LKSGAGRCINCGSTADLVEYEKVLKAFFVPVW-KWPA--KEPALFCNNCNLLFPSSLPPPPPPPPLV--SDVSKCRFCDR 91 (107)
Q Consensus 17 ~~~~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~-~~~~--~~~~~~C~~CG~~~~~~~~~~~~~~~~~--~~~~~C~~CG~ 91 (107)
..++..+|+.|-+.. + |-++ +.++.-|++||=.|.|-+. .|++.+.+ ..-.-|+.|.+
T Consensus 13 i~pD~a~C~~Cl~e~----------------~dp~~Rry~YpF~nCt~CGPR~tii~~-lPYDR~~TsM~~F~mC~~C~~ 75 (657)
T 3ttc_A 13 IVPDAATCPACLAEM----------------NTPGERRYRYPFINCTHCGPRFTIIRA-MPYDRPFTVMAAFPLCPACDK 75 (657)
T ss_dssp CCCCBCCCHHHHHHH----------------TSTTSTTTTCTTCCBTTBBCSGGGBSS-SSCSGGGBGGGGSCCCHHHHH
T ss_pred cCCchhhhHHHHHHh----------------cCCCCcccCCccccCcCCCchHHhccc-CCCCCCCCcccCCCCChHHHH
Confidence 456777899997711 0 1222 2248889999999977442 23332211 12345888888
Q ss_pred eecC--------CCccCcCCCCC
Q 033949 92 LVEP--------DFSFCPYCGSA 106 (107)
Q Consensus 92 ~i~~--------~~~fCP~CG~~ 106 (107)
|-.. ...-||.||=+
T Consensus 76 EY~dp~dRRfHAqp~aCp~CGP~ 98 (657)
T 3ttc_A 76 EYRDPLDRRFHAQPVACPECGPY 98 (657)
T ss_dssp HHHCTTSTTTTCTTCCCTTTSCC
T ss_pred HhCCCCCCcCcCCCCcCcccCcc
Confidence 8754 46778888854
No 131
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=64.93 E-value=5 Score=23.89 Aligned_cols=64 Identities=17% Similarity=0.423 Sum_probs=34.8
Q ss_pred CcEECCCCCCCc----EEEEE-eeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCCCCCCCCCC-------CccCccccc
Q 033949 20 GAGRCINCGSTA----DLVEY-EKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSLPPPPPPPP-------LVSDVSKCR 87 (107)
Q Consensus 20 ~~~~C~~Cg~~~----~~~~~-~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~~~~~~~~~-------~~~~~~~C~ 87 (107)
....|+.|+..+ ++++. .+.+| ..-..|..|+..+.... ....+.. ......+|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H------------~~CF~C~~C~~~L~~~~-~~~~~g~~yC~~cy~~~~~~~C~ 70 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWH------------DTCFRCAKCLHPLANET-FVAKDNKILCNKCTTREDSPKCK 70 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEE------------TTTCCCSSSCCCTTSSC-CEEETTEEECHHHHTTCCCCBCS
T ss_pred CCCcCcccCCcccCCceEEEECccChh------------hcCCcccccCCCCCcCe-eECcCCEEEChhHhhhhcCCccc
Confidence 445799999933 22221 11222 14567899999885322 1111110 112346899
Q ss_pred cCCceecCC
Q 033949 88 FCDRLVEPD 96 (107)
Q Consensus 88 ~CG~~i~~~ 96 (107)
.|+..|.++
T Consensus 71 ~C~~~I~~~ 79 (101)
T 2cup_A 71 GCFKAIVAG 79 (101)
T ss_dssp SSCCBCCSS
T ss_pred cCCCccccC
Confidence 999998853
No 132
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=64.92 E-value=2.4 Score=28.78 Aligned_cols=23 Identities=30% Similarity=0.690 Sum_probs=17.6
Q ss_pred ccccccCCceecC--CCccCcCCCC
Q 033949 83 VSKCRFCDRLVEP--DFSFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~~--~~~fCP~CG~ 105 (107)
...|+.||+.+.+ +.-.||.||+
T Consensus 140 ~a~~~~~g~~m~~~~~~~~cp~~g~ 164 (179)
T 3m7n_A 140 RALCSNCKTEMVREGDILKCPECGR 164 (179)
T ss_dssp ECBCTTTCCBCEECSSSEECSSSCC
T ss_pred EecccccCCceEECCCEEECCCCCC
Confidence 5678888887744 6778888886
No 133
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.82 E-value=2 Score=24.17 Aligned_cols=9 Identities=22% Similarity=0.785 Sum_probs=4.1
Q ss_pred ccccCCcee
Q 033949 85 KCRFCDRLV 93 (107)
Q Consensus 85 ~C~~CG~~i 93 (107)
.|..|+..+
T Consensus 37 ~C~~C~~~L 45 (72)
T 1x4l_A 37 NCKKCSLSL 45 (72)
T ss_dssp BCSSSCCBC
T ss_pred EeccCCCcC
Confidence 344444444
No 134
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.75 E-value=1.8 Score=24.73 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=7.3
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.|.+.+..
T Consensus 60 ~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 60 SSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCCSSCS
T ss_pred CcCCCCCCccCH
Confidence 456666666553
No 135
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=64.32 E-value=1.6 Score=32.88 Aligned_cols=17 Identities=6% Similarity=-0.003 Sum_probs=11.9
Q ss_pred CCCceeCCCCCCCCCCC
Q 033949 53 KEPALFCNNCNLLFPSS 69 (107)
Q Consensus 53 ~~~~~~C~~CG~~~~~~ 69 (107)
..+.+.||.||+.+..+
T Consensus 284 g~~~v~Cp~cgA~y~~~ 300 (325)
T 3mv2_A 284 DTPSVSDPLTGSKYVIT 300 (325)
T ss_dssp SSCEEECTTTCCEEEGG
T ss_pred CCCCccCCCCCCeechh
Confidence 44678888888877654
No 136
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=64.24 E-value=1.9 Score=26.68 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=21.2
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
....||.||. .+. + .......|..||..+.-
T Consensus 35 ~ky~CpfCgk~~vk--R----------------~a~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 35 SKYFCEFCGKFAVK--R----------------KAVGIWGCKDCGKVKAG 66 (92)
T ss_dssp SCBCCTTTCSSCBE--E----------------EETTEEECSSSCCEEEC
T ss_pred ccccCcccCCCeeE--e----------------cCcceEEcCCCCCEEeC
Confidence 4567999999 431 1 12468899999987643
No 137
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=63.85 E-value=1.1 Score=25.70 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=7.2
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.|++.+..
T Consensus 44 ~~CP~C~~~~~~ 55 (78)
T 1t1h_A 44 KTCPKSQETLLH 55 (78)
T ss_dssp CBCTTTCCBCSS
T ss_pred CCCCCCcCCCCh
Confidence 456666666543
No 138
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=63.39 E-value=4.6 Score=26.94 Aligned_cols=30 Identities=37% Similarity=0.514 Sum_probs=25.3
Q ss_pred CCcEECCCCCCCcEEEEEeeEEEEEEEeeeecC
Q 033949 19 SGAGRCINCGSTADLVEYEKVLKAFFVPVWKWP 51 (107)
Q Consensus 19 ~~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~ 51 (107)
.+.+.|-+||..|...+.++-+. +|+++..
T Consensus 67 ~g~I~C~~Cgq~WG~~m~yk~~~---LP~LkIk 96 (145)
T 3eqt_A 67 GGVISCRNCGEVWGLQMIYKSVK---LPVLKVR 96 (145)
T ss_dssp EEEEEETTTCCEEEEEEEETTEE---EEEECGG
T ss_pred CcEEEchhhChhhHhhEEecccc---CceEeEE
Confidence 35778999999999998888877 8988865
No 139
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.56 E-value=9.8 Score=22.19 Aligned_cols=37 Identities=11% Similarity=0.320 Sum_probs=17.9
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCCCc-cCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPPLV-SDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~~~-~~~~~C~~CG~~i~~ 95 (107)
+...|+.|+..+...=. ...+. .....||.|.++.+.
T Consensus 27 ~g~~C~~C~h~fH~~Ci----~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 27 QGQSCETCGIRMHLPCV----AKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSEECSSSCCEECHHHH----HHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCccCCCCchhhHHHH----HHHHHhcCCCCCCCCcCcCCC
Confidence 34677777777632000 00000 012568888877543
No 140
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=62.48 E-value=3.1 Score=27.46 Aligned_cols=32 Identities=19% Similarity=0.486 Sum_probs=20.1
Q ss_pred EECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 22 GRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 22 ~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
+.|+.|++ .-.+.+ ..+...+.|..||+.-.+
T Consensus 103 VlC~~C~sPdT~l~k---------------~~r~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 103 VICHECNRPDTRIIR---------------EGRISLLKCEACGAKAPL 135 (138)
T ss_dssp HHHTCCSSCSSCCEE---------------ETTTTEEECSTTSCCCCS
T ss_pred EECCCCCCcCcEEEE---------------cCCeEEEEccCCCCCccc
Confidence 56999999 222221 123468888888887544
No 141
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=62.48 E-value=4.9 Score=23.18 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=5.5
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...|..||..+
T Consensus 27 rHHCR~CG~v~ 37 (73)
T 1vfy_A 27 KHHCRSCGGVF 37 (73)
T ss_dssp CEECTTTCCEE
T ss_pred cccCCCCCEEE
Confidence 34555555543
No 142
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=62.27 E-value=4.9 Score=21.70 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=14.4
Q ss_pred ccccccCCceecCCCccCcCC
Q 033949 83 VSKCRFCDRLVEPDFSFCPYC 103 (107)
Q Consensus 83 ~~~C~~CG~~i~~~~~fCP~C 103 (107)
.-+|..|+....+-..+|..|
T Consensus 13 ~WkC~~C~~~N~Pl~r~C~rC 33 (46)
T 2c6a_A 13 YWKCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp CEECTTTCCEECSSCSSCTTT
T ss_pred eEecccccccCCCccchhhHH
Confidence 456777777777777777666
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.11 E-value=5.9 Score=27.47 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=7.1
Q ss_pred eeCCCCCCCCCC
Q 033949 57 LFCNNCNLLFPS 68 (107)
Q Consensus 57 ~~C~~CG~~~~~ 68 (107)
..|+.|+..+..
T Consensus 162 ~~C~~C~~~F~~ 173 (220)
T 1dvp_A 162 RVCHRCRVEFTF 173 (220)
T ss_dssp SBCTTTCCBCCS
T ss_pred CccCCCCCccCC
Confidence 356666666543
No 144
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=62.04 E-value=2 Score=22.57 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=6.1
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...|+.|-..+
T Consensus 5 ~~~C~IC~~~~ 15 (55)
T 2ecm_A 5 SSGCPICLEDI 15 (55)
T ss_dssp CCSCTTTCCCC
T ss_pred CCcCcccChhh
Confidence 34566665555
No 145
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=62.01 E-value=2.3 Score=31.80 Aligned_cols=13 Identities=15% Similarity=0.508 Sum_probs=8.5
Q ss_pred ccccccCCceecC
Q 033949 83 VSKCRFCDRLVEP 95 (107)
Q Consensus 83 ~~~C~~CG~~i~~ 95 (107)
...|.+||..++.
T Consensus 42 ~~vC~~CGlVl~e 54 (345)
T 4bbr_M 42 DVVCALCGLVLSD 54 (345)
T ss_dssp EEEETTTCBEEES
T ss_pred cEEeCCCCCCccC
Confidence 4567777776654
No 146
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=61.54 E-value=3.5 Score=35.50 Aligned_cols=10 Identities=40% Similarity=0.966 Sum_probs=5.2
Q ss_pred CccCcCCCCC
Q 033949 97 FSFCPYCGSA 106 (107)
Q Consensus 97 ~~fCP~CG~~ 106 (107)
.+-||.||++
T Consensus 527 ~k~cp~cg~~ 536 (1041)
T 3f2b_A 527 DKNCPRCGTK 536 (1041)
T ss_dssp CCBCTTTCCB
T ss_pred cccCcccccc
Confidence 3455555554
No 147
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=61.09 E-value=3.7 Score=23.98 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=8.3
Q ss_pred ccccccCCceec
Q 033949 83 VSKCRFCDRLVE 94 (107)
Q Consensus 83 ~~~C~~CG~~i~ 94 (107)
.+.||.||.++.
T Consensus 9 ~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 9 TVNCPTCGKTVV 20 (68)
T ss_dssp EEECTTTCCEEE
T ss_pred cCcCCCCCCccc
Confidence 456777777765
No 148
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=61.09 E-value=6.7 Score=26.73 Aligned_cols=10 Identities=20% Similarity=0.653 Sum_probs=7.3
Q ss_pred ccccccCCce
Q 033949 83 VSKCRFCDRL 92 (107)
Q Consensus 83 ~~~C~~CG~~ 92 (107)
-+.|.+||..
T Consensus 165 f~~C~~C~~~ 174 (178)
T 3po3_S 165 FCTCEACGNR 174 (178)
T ss_dssp CEEETTTCCE
T ss_pred EEEcCCCCCe
Confidence 5678888865
No 149
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.06 E-value=5.2 Score=22.67 Aligned_cols=12 Identities=17% Similarity=0.678 Sum_probs=7.1
Q ss_pred ceeCCCCCCCCC
Q 033949 56 ALFCNNCNLLFP 67 (107)
Q Consensus 56 ~~~C~~CG~~~~ 67 (107)
-..|..|+..+.
T Consensus 35 CF~C~~C~~~L~ 46 (76)
T 1x68_A 35 CFNCGKCSVSLV 46 (76)
T ss_dssp GCBCTTTCCBCS
T ss_pred cCChhhCCCcCC
Confidence 345666666654
No 150
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.98 E-value=6.7 Score=21.54 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=15.2
Q ss_pred cccccCCceecCCCccCcCCCCC
Q 033949 84 SKCRFCDRLVEPDFSFCPYCGSA 106 (107)
Q Consensus 84 ~~C~~CG~~i~~~~~fCP~CG~~ 106 (107)
-.|+.|.....+.+..|-.|+++
T Consensus 12 W~C~~CT~~N~~~~~~C~~C~~p 34 (53)
T 2d9g_A 12 WDCSVCTFRNSAEAFKCMMCDVR 34 (53)
T ss_dssp EECSSSCCEECSSCSSCSSSCCC
T ss_pred cCCCCCccCCCCCCCccCCCCCc
Confidence 45666776666667777666654
No 151
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=60.80 E-value=3.5 Score=25.21 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=12.6
Q ss_pred CCceeCCCCCCCCCCCC
Q 033949 54 EPALFCNNCNLLFPSSL 70 (107)
Q Consensus 54 ~~~~~C~~CG~~~~~~~ 70 (107)
.....|++||..|..+.
T Consensus 46 ~g~~~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 46 TDEKICPYCSTLYRYDP 62 (87)
T ss_dssp CCEECCTTTCCEEECCT
T ss_pred CCeEECCCCCCEeEcCC
Confidence 36788888888886644
No 152
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=60.46 E-value=2.2 Score=26.41 Aligned_cols=31 Identities=19% Similarity=0.421 Sum_probs=20.9
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
....||.||. .+. + .......|..||..+.-
T Consensus 35 ~ky~CpfCgk~~vk--R----------------~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 35 ARYDCSFCGKKTVK--R----------------GAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp SCCCCSSSCSSCCE--E----------------EETTEEECTTTCCEEEC
T ss_pred cCCcCCCCCCceee--e----------------cccceEEcCCCCCEEeC
Confidence 4567999998 431 0 12468899999887643
No 153
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.11 E-value=1.7 Score=24.00 Aligned_cols=9 Identities=44% Similarity=1.243 Sum_probs=4.3
Q ss_pred ccCcCCCCC
Q 033949 98 SFCPYCGSA 106 (107)
Q Consensus 98 ~fCP~CG~~ 106 (107)
..||.|+++
T Consensus 44 ~~CP~Cr~~ 52 (65)
T 1g25_A 44 GNCPECGTP 52 (65)
T ss_dssp SSCTTTCCC
T ss_pred CcCCCCCCc
Confidence 345555543
No 154
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=59.44 E-value=4.8 Score=24.58 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=21.1
Q ss_pred CceeCCCCCCCCCCCCCC--CCCCC----CCccCccccccCCce
Q 033949 55 PALFCNNCNLLFPSSLPP--PPPPP----PLVSDVSKCRFCDRL 92 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~--~~~~~----~~~~~~~~C~~CG~~ 92 (107)
....|+.||..|+...-. ..|.. +.......||.||+.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 467899999998763211 01110 001134578888875
No 155
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=59.23 E-value=2.8 Score=29.81 Aligned_cols=9 Identities=33% Similarity=0.966 Sum_probs=4.9
Q ss_pred cEECCCCCC
Q 033949 21 AGRCINCGS 29 (107)
Q Consensus 21 ~~~C~~Cg~ 29 (107)
...|..|+.
T Consensus 121 ~~~C~~C~~ 129 (249)
T 1m2k_A 121 VVRCTSCNN 129 (249)
T ss_dssp EEEESSSSC
T ss_pred eeEeCCCCC
Confidence 334666665
No 156
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.79 E-value=22 Score=20.09 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=18.7
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..+. +.. ....+. ....-..|..|+..+..
T Consensus 14 ~~~~C~~C~~~I~-~~~-~~a~~~~~H~~CF~C~~C~~~L~~ 53 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPF-MVAGEFKYHPECFACMSCKVIIED 53 (81)
T ss_dssp SSCBCTTTCCBCC-SCC-BCCTTCCBCTTSCBCTTTCCBCCT
T ss_pred cCCcCccCCCCcC-ceE-EEECCceeccccCCccCCCCccCC
Confidence 3446777777665 111 111111 11234567777777654
No 157
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=58.76 E-value=3.6 Score=27.36 Aligned_cols=9 Identities=33% Similarity=0.921 Sum_probs=4.2
Q ss_pred eCCCCCCCC
Q 033949 58 FCNNCNLLF 66 (107)
Q Consensus 58 ~C~~CG~~~ 66 (107)
+||.||+..
T Consensus 5 ~C~~CG~~~ 13 (189)
T 3cng_A 5 FCSQCGGEV 13 (189)
T ss_dssp BCTTTCCBC
T ss_pred cCchhCCcc
Confidence 444444444
No 158
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.55 E-value=2.6 Score=25.59 Aligned_cols=31 Identities=19% Similarity=0.504 Sum_probs=21.3
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
....||.||. .+. + .......|..||..+.-
T Consensus 34 ~ky~CpfCGk~~vk--R----------------~a~GIW~C~kCg~~~AG 65 (83)
T 3j21_i 34 QKHTCPVCGRKAVK--R----------------ISTGIWQCQKCGATFAG 65 (83)
T ss_dssp SCBCCSSSCSSCEE--E----------------EETTEEEETTTCCEEEC
T ss_pred cccCCCCCCCceeE--e----------------cCcCeEEcCCCCCEEeC
Confidence 3567999999 431 1 12478899999987643
No 159
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=58.46 E-value=7.2 Score=25.71 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=2.7
Q ss_pred cccccCCce
Q 033949 84 SKCRFCDRL 92 (107)
Q Consensus 84 ~~C~~CG~~ 92 (107)
..|..||+.
T Consensus 125 l~C~ACGa~ 133 (139)
T 3cw2_K 125 IVCLACGAQ 133 (139)
T ss_dssp SSCCC----
T ss_pred EEecCCCCC
Confidence 445555554
No 160
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=58.31 E-value=2.8 Score=29.21 Aligned_cols=13 Identities=15% Similarity=0.508 Sum_probs=8.3
Q ss_pred ccccccCCceecC
Q 033949 83 VSKCRFCDRLVEP 95 (107)
Q Consensus 83 ~~~C~~CG~~i~~ 95 (107)
...|.+||.-++.
T Consensus 42 E~VCsdCGLVLEE 54 (197)
T 3k1f_M 42 DVVCALCGLVLSD 54 (197)
T ss_dssp EEEETTTCBBCCC
T ss_pred EEEEcCCCCCcCC
Confidence 3567777776654
No 161
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=57.97 E-value=7.3 Score=19.07 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=15.0
Q ss_pred cccccCCceecCCCccCcCCCCC
Q 033949 84 SKCRFCDRLVEPDFSFCPYCGSA 106 (107)
Q Consensus 84 ~~C~~CG~~i~~~~~fCP~CG~~ 106 (107)
-.|+.|.....+....|--|+.+
T Consensus 9 W~C~~CT~~N~~~~~~Ce~C~~~ 31 (34)
T 3a9j_C 9 WNCTACTFLNHPALIRCEQCEMP 31 (34)
T ss_dssp EECTTTCCEECTTCSBCTTTCCB
T ss_pred CCCCCCccccCCCCCeeCCCCCc
Confidence 35666776666666777666653
No 162
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=57.84 E-value=2.1 Score=33.08 Aligned_cols=11 Identities=18% Similarity=0.576 Sum_probs=6.8
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...|++||...
T Consensus 41 Sf~C~~CGyrn 51 (404)
T 2qkd_A 41 SFSCEHCGWNN 51 (404)
T ss_dssp EEECTTTCCEE
T ss_pred EEECCCCCCch
Confidence 34577777654
No 163
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=57.81 E-value=7.1 Score=27.35 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=5.6
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...|.+||..+
T Consensus 180 rhHCR~CG~v~ 190 (226)
T 3zyq_A 180 KHHCRACGQIF 190 (226)
T ss_dssp CEECTTTCCEE
T ss_pred ccccCCCcCEe
Confidence 34555555543
No 164
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=56.90 E-value=6.6 Score=26.72 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=18.5
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCce
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRL 92 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~ 92 (107)
.+..||.|.+.+..... ....|+.|+..
T Consensus 41 ~Y~ACp~CnKKV~~~~~----------g~~~CekC~~~ 68 (172)
T 3u50_C 41 YYYRCTCQGKSVLKYHG----------DSFFCESCQQF 68 (172)
T ss_dssp EEEECTTSCCCEEEETT----------TEEEETTTTEE
T ss_pred EehhchhhCCEeeeCCC----------CeEECCCCCCC
Confidence 48888888887641110 25678888887
No 165
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=56.79 E-value=5.2 Score=29.46 Aligned_cols=24 Identities=25% Similarity=0.773 Sum_probs=14.7
Q ss_pred ccccccCCceecC-----CCccCcCCCCC
Q 033949 83 VSKCRFCDRLVEP-----DFSFCPYCGSA 106 (107)
Q Consensus 83 ~~~C~~CG~~i~~-----~~~fCP~CG~~ 106 (107)
..+|++|++.+-. ....||.||.+
T Consensus 24 ~~kc~~~~~~~~~~~l~~~~~v~~~~~~~ 52 (304)
T 2f9y_B 24 WTKCDSCGQVLYRAELERNLEVCPKCDHH 52 (304)
T ss_dssp EECCTTTCCCEETTHHHHTTTBCTTTCCB
T ss_pred HHhhhhccchhhHHHHHHHhCCCCCCCCC
Confidence 3567777766644 34677777653
No 166
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=56.18 E-value=1.8 Score=26.20 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=6.6
Q ss_pred cEECCCCCCC
Q 033949 21 AGRCINCGST 30 (107)
Q Consensus 21 ~~~C~~Cg~~ 30 (107)
...|+-|...
T Consensus 22 ~~~C~IC~~~ 31 (100)
T 3lrq_A 22 VFRCFICMEK 31 (100)
T ss_dssp HTBCTTTCSB
T ss_pred CCCCccCCcc
Confidence 4467777774
No 167
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=55.99 E-value=2 Score=23.97 Aligned_cols=31 Identities=23% Similarity=0.644 Sum_probs=22.0
Q ss_pred cEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCC--CCCCCCCCCC
Q 033949 21 AGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCN--NCNLLFPSSL 70 (107)
Q Consensus 21 ~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~--~CG~~~~~~~ 70 (107)
-..||.|++..++ ..+.+.|+ .||..|++.+
T Consensus 10 iL~CP~c~~~L~~-------------------~~~~L~C~~~~c~~~YPI~d 42 (56)
T 2kpi_A 10 ILACPACHAPLEE-------------------RDAELICTGQDCGLAYPVRD 42 (56)
T ss_dssp SCCCSSSCSCEEE-------------------ETTEEEECSSSCCCEEEEET
T ss_pred heeCCCCCCccee-------------------cCCEEEcCCcCCCcEEeeEC
Confidence 3469999995321 12788999 8999987744
No 168
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=55.86 E-value=7.5 Score=21.47 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=6.0
Q ss_pred CceeCCCCCCC
Q 033949 55 PALFCNNCNLL 65 (107)
Q Consensus 55 ~~~~C~~CG~~ 65 (107)
++..|+.|+..
T Consensus 10 D~WkC~~C~k~ 20 (53)
T 2cr8_A 10 DEWQCTECKKF 20 (53)
T ss_dssp CCEECSSSCCE
T ss_pred ceeeccccccc
Confidence 45566666543
No 169
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.70 E-value=22 Score=20.09 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=23.7
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..+..........+. ....-..|..|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 55 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGT 55 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTT
T ss_pred cCCcCccCCcccccCceEEEECccccccccCchhhCCCccCC
Confidence 456899999987643221111111 11234678999988865
No 170
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=55.54 E-value=5.2 Score=30.46 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=11.9
Q ss_pred cccccCCceec-----CCCccCcCCCCC
Q 033949 84 SKCRFCDRLVE-----PDFSFCPYCGSA 106 (107)
Q Consensus 84 ~~C~~CG~~i~-----~~~~fCP~CG~~ 106 (107)
..|++||+.-. .....||+||.+
T Consensus 245 ~~C~~C~~~~~~~~~~~~~~~C~~cg~~ 272 (392)
T 3axs_A 245 QYCFNCMNREVVTDLYKFKEKCPHCGSK 272 (392)
T ss_dssp EECTTTCCEEEECCGGGCCSBCTTTCSB
T ss_pred EECCCCCCeEeecCCCCCCCcCCCCCCc
Confidence 44666654321 224567777754
No 171
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.50 E-value=1.5 Score=25.26 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=6.7
Q ss_pred CcEECCCCCCC
Q 033949 20 GAGRCINCGST 30 (107)
Q Consensus 20 ~~~~C~~Cg~~ 30 (107)
....|+-|...
T Consensus 14 ~~~~C~IC~~~ 24 (81)
T 2csy_A 14 IPFRCFICRQA 24 (81)
T ss_dssp CCSBCSSSCSB
T ss_pred CCCCCcCCCch
Confidence 34567777663
No 172
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=55.37 E-value=3.5 Score=26.02 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=21.6
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
....||.||. .+. + .....+.|..||..+.-
T Consensus 35 aky~CpfCgk~~vK--R----------------~a~GIW~C~kCg~~~AG 66 (103)
T 4a17_Y 35 AKYGCPFCGKVAVK--R----------------AAVGIWKCKPCKKIIAG 66 (103)
T ss_dssp SCEECTTTCCEEEE--E----------------EETTEEEETTTTEEEEC
T ss_pred cCCCCCCCCCceee--e----------------cCcceEEcCCCCCEEeC
Confidence 4678999999 321 1 12478899999987743
No 173
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.13 E-value=2.5 Score=26.16 Aligned_cols=8 Identities=50% Similarity=1.356 Sum_probs=4.2
Q ss_pred cCcCCCCC
Q 033949 99 FCPYCGSA 106 (107)
Q Consensus 99 fCP~CG~~ 106 (107)
-||-||++
T Consensus 49 ~CPvCgs~ 56 (112)
T 1l8d_A 49 KCPVCGRE 56 (112)
T ss_dssp ECTTTCCE
T ss_pred CCCCCCCc
Confidence 45555553
No 174
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=55.05 E-value=4.9 Score=23.36 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=5.3
Q ss_pred CcEECCCCCC
Q 033949 20 GAGRCINCGS 29 (107)
Q Consensus 20 ~~~~C~~Cg~ 29 (107)
+...||+||.
T Consensus 39 g~~~CpYCg~ 48 (67)
T 2jrr_A 39 GWVECPYCDC 48 (67)
T ss_dssp SEEEETTTTE
T ss_pred CeEECCCCCC
Confidence 4455555555
No 175
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=55.01 E-value=2.6 Score=24.06 Aligned_cols=12 Identities=17% Similarity=0.373 Sum_probs=7.3
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.|...+..
T Consensus 60 ~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 60 GNCPVCRVPYPF 71 (85)
T ss_dssp BCCTTTCCCCCT
T ss_pred CCCCCCCCcCCH
Confidence 456666666543
No 176
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.68 E-value=7.5 Score=23.72 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=10.4
Q ss_pred eecCCCcEECCCCCC
Q 033949 15 RVLKSGAGRCINCGS 29 (107)
Q Consensus 15 ~~~~~~~~~C~~Cg~ 29 (107)
++.-.....|+.|+.
T Consensus 22 ~i~~~~~~~C~~C~G 36 (104)
T 2ctt_A 22 EFTVNIMDTCERCNG 36 (104)
T ss_dssp TCCSSCCEECSSSSS
T ss_pred EEEeeeeeECCCCcC
Confidence 455556678888887
No 177
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=54.56 E-value=7.9 Score=24.46 Aligned_cols=24 Identities=38% Similarity=0.742 Sum_probs=21.5
Q ss_pred CccccccCCceecCCCccCc--CCCC
Q 033949 82 DVSKCRFCDRLVEPDFSFCP--YCGS 105 (107)
Q Consensus 82 ~~~~C~~CG~~i~~~~~fCP--~CG~ 105 (107)
...+|-.|++.+++.|+.|- .||+
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~ 117 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGH 117 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTS
T ss_pred ceEeeccccccCCchhhccchhhCCC
Confidence 46889999999999999999 5986
No 178
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=54.03 E-value=0.9 Score=28.80 Aligned_cols=23 Identities=22% Similarity=0.664 Sum_probs=18.3
Q ss_pred ccccccCCceecC-------CCccCcCCCC
Q 033949 83 VSKCRFCDRLVEP-------DFSFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~~-------~~~fCP~CG~ 105 (107)
.-.|..||.+|+. .+.+|-.|-+
T Consensus 81 yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~ 110 (112)
T 2kq9_A 81 FGTCVKCGKRISEDRLKAVPYTPFCQECAA 110 (112)
T ss_dssp CSEETTTTEECCHHHHHHCSCCSSCHHHHH
T ss_pred cCeeCCCCCcccHHHHhcCCCcchhHHHHh
Confidence 4589999999965 7888877744
No 179
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=53.95 E-value=17 Score=20.27 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=23.6
Q ss_pred CceeCCCCCCCCCC---CCCCCCCCCC-CccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPS---SLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~---~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..+.. +.+.....+. ....-..|..|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 58 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLAN 58 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTT
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCC
Confidence 56789999998764 2221110100 11234679999998864
No 180
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=53.63 E-value=3.7 Score=23.27 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=7.1
Q ss_pred CcEECCCCCCC
Q 033949 20 GAGRCINCGST 30 (107)
Q Consensus 20 ~~~~C~~Cg~~ 30 (107)
....|+-|...
T Consensus 14 ~~~~C~IC~~~ 24 (74)
T 2yur_A 14 DELLCLICKDI 24 (74)
T ss_dssp GGGSCSSSCCC
T ss_pred CCCCCcCCChH
Confidence 45567777764
No 181
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=53.50 E-value=7.4 Score=23.39 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=15.1
Q ss_pred eecCCCCCceeCCCCCCCCCC
Q 033949 48 WKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 48 ~~~~~~~~~~~C~~CG~~~~~ 68 (107)
+.++.++....||+||..|..
T Consensus 45 L~ld~~~g~~~CpYCg~~f~l 65 (80)
T 2jvm_A 45 LSIPHETGFVECGYCDRRYIH 65 (80)
T ss_dssp EECCTTTCEEECSSSSCEEEE
T ss_pred EEccCCCCeEECCCCCCEEEe
Confidence 345334578999999998854
No 182
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=53.46 E-value=2.3 Score=28.01 Aligned_cols=10 Identities=20% Similarity=0.776 Sum_probs=5.9
Q ss_pred cccccCCcee
Q 033949 84 SKCRFCDRLV 93 (107)
Q Consensus 84 ~~C~~CG~~i 93 (107)
..||.|++.+
T Consensus 91 ~~CP~Cr~~~ 100 (165)
T 2ckl_B 91 KECPTCRKKL 100 (165)
T ss_dssp CBCTTTCCBC
T ss_pred CCCCCCCCcC
Confidence 3466666655
No 183
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=53.21 E-value=9.9 Score=18.87 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=16.3
Q ss_pred cccccCCceecCCCccCcCCCCC
Q 033949 84 SKCRFCDRLVEPDFSFCPYCGSA 106 (107)
Q Consensus 84 ~~C~~CG~~i~~~~~fCP~CG~~ 106 (107)
=.|+.|-....+++..|.-|.++
T Consensus 8 W~C~~C~~~N~~~~~kC~aC~tp 30 (33)
T 3gj3_B 8 WDCDTCLVQNKPEAVKCVACETP 30 (33)
T ss_dssp EECTTTCCEECTTCSBCTTTCCB
T ss_pred eeCCcccCCCccccCEEcccCCC
Confidence 45777777777777777777653
No 184
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=53.02 E-value=10 Score=26.32 Aligned_cols=33 Identities=33% Similarity=0.749 Sum_probs=21.7
Q ss_pred CcEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCC
Q 033949 20 GAGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSL 70 (107)
Q Consensus 20 ~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~ 70 (107)
....|.+||..+. .......+|+.|+...+...
T Consensus 9 ~~~~Cw~C~~~~~------------------~~~~~~~fC~~c~~~q~~~~ 41 (207)
T 3bvo_A 9 NYPRCWNCGGPWG------------------PGREDRFFCPQCRALQAPDP 41 (207)
T ss_dssp --CBCSSSCCBCC------------------SSCSCCCBCTTTCCBCCCCT
T ss_pred CCCCCCCCCCCcc------------------cccccccccccccccCCCCC
Confidence 3457999998530 11346889999999887653
No 185
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=52.56 E-value=4.8 Score=29.01 Aligned_cols=24 Identities=38% Similarity=0.701 Sum_probs=12.4
Q ss_pred ccccccCCceecC--------CCccCcCCCCC
Q 033949 83 VSKCRFCDRLVEP--------DFSFCPYCGSA 106 (107)
Q Consensus 83 ~~~C~~CG~~i~~--------~~~fCP~CG~~ 106 (107)
...|..||..... ....||.|+++
T Consensus 134 ~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 134 VFECRGCMRHHAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEETTTCCEEEEECSSSSCCCCSCCTTTCCC
T ss_pred EEEcCCCCCEEEEEecCCcccCCCcCCCCCCC
Confidence 4556666654321 12456666653
No 186
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.75 E-value=11 Score=23.19 Aligned_cols=9 Identities=33% Similarity=0.755 Sum_probs=5.5
Q ss_pred cEECCCCCC
Q 033949 21 AGRCINCGS 29 (107)
Q Consensus 21 ~~~C~~Cg~ 29 (107)
...||-|..
T Consensus 22 ~~~C~IC~~ 30 (117)
T 1jm7_B 22 LLRCSRCTN 30 (117)
T ss_dssp TTSCSSSCS
T ss_pred CCCCCCCCh
Confidence 345777766
No 187
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=51.69 E-value=5.7 Score=22.10 Aligned_cols=9 Identities=11% Similarity=-0.134 Sum_probs=4.6
Q ss_pred cccccCCce
Q 033949 84 SKCRFCDRL 92 (107)
Q Consensus 84 ~~C~~CG~~ 92 (107)
..||+||+.
T Consensus 28 ~~c~~cGe~ 36 (56)
T 3r8s_0 28 SVDKTSGEK 36 (56)
T ss_dssp EECTTTCCE
T ss_pred eECCCCCCe
Confidence 345555554
No 188
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=51.33 E-value=4.6 Score=25.00 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=18.8
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLL 65 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~ 65 (107)
.-+.|..||+ +++ .+...|..||..
T Consensus 15 tHtlCrRCG~~syH---------------------~qK~~Ca~CGyp 40 (94)
T 4a18_A 15 THTLCRRCGKATYH---------------------KQKLRCAACGYP 40 (94)
T ss_dssp CEEECTTTCSEEEE---------------------TTTTEESSSCGG
T ss_pred ccceecCcCchhhh---------------------hccccccccCCc
Confidence 3467999999 652 366789999974
No 189
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=51.20 E-value=2.9 Score=23.06 Aligned_cols=10 Identities=40% Similarity=0.913 Sum_probs=5.1
Q ss_pred ccccCCceec
Q 033949 85 KCRFCDRLVE 94 (107)
Q Consensus 85 ~C~~CG~~i~ 94 (107)
.||.|.+.+.
T Consensus 42 ~CP~Cr~~~~ 51 (68)
T 1chc_A 42 TCPLCKVPVE 51 (68)
T ss_dssp STTTTCCCCC
T ss_pred cCcCCChhhH
Confidence 4555555543
No 190
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=51.00 E-value=0.81 Score=28.52 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=9.8
Q ss_pred CCceeCCCCCCCCC
Q 033949 54 EPALFCNNCNLLFP 67 (107)
Q Consensus 54 ~~~~~C~~CG~~~~ 67 (107)
+....|+.|...+.
T Consensus 70 ~~~~~C~iC~~~~~ 83 (133)
T 4ap4_A 70 SGTVSCPICMDGYS 83 (133)
T ss_dssp SSSCBCTTTCCBHH
T ss_pred CCCCCCCCCCCccc
Confidence 35677888877664
No 191
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=50.65 E-value=6.7 Score=26.80 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=24.7
Q ss_pred EECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCCC
Q 033949 22 GRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSLP 71 (107)
Q Consensus 22 ~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~~ 71 (107)
+.|+.|++.-+.+... -..+...+.|..||+.-.++..
T Consensus 97 VlC~~C~sPdT~L~k~------------~~~r~~~l~C~ACGa~~~V~~~ 134 (170)
T 2g2k_A 97 VLCPECENPETDLHVN------------PKKQTIGNSCKACGYRGMLDTH 134 (170)
T ss_dssp HSCTTTSSSCEEEEEE------------TTTTEEEEEETTTCCCCCSCSS
T ss_pred EECCCCCCCccEEEEe------------cCCCEEEEEccccCCccccccc
Confidence 6799999933222210 0123368999999999888654
No 192
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=50.60 E-value=29 Score=21.45 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=4.8
Q ss_pred cccccCCcee
Q 033949 84 SKCRFCDRLV 93 (107)
Q Consensus 84 ~~C~~CG~~i 93 (107)
..|..|+..+
T Consensus 37 F~C~~C~~~L 46 (123)
T 2l3k_A 37 FKCAACQKHF 46 (123)
T ss_dssp CBCTTTCCBC
T ss_pred CccccCCCCC
Confidence 3455555544
No 193
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=50.58 E-value=6.9 Score=24.45 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=9.5
Q ss_pred cCCCcEECCCCCC
Q 033949 17 LKSGAGRCINCGS 29 (107)
Q Consensus 17 ~~~~~~~C~~Cg~ 29 (107)
.....+.||+|++
T Consensus 66 ~~s~~~~C~nC~R 78 (99)
T 3mhs_C 66 ESSQYIHCENCGR 78 (99)
T ss_dssp TTSCEEECTTTCC
T ss_pred cCCCeEECCCCCC
Confidence 4456777888887
No 194
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=50.13 E-value=5.9 Score=28.94 Aligned_cols=23 Identities=22% Similarity=0.768 Sum_probs=16.3
Q ss_pred ccccccCCceecC-----CCccCcCCCC
Q 033949 83 VSKCRFCDRLVEP-----DFSFCPYCGS 105 (107)
Q Consensus 83 ~~~C~~CG~~i~~-----~~~fCP~CG~ 105 (107)
..+|++|++.+-. ....||.|+.
T Consensus 30 ~~kc~~~~~~~y~~~l~~~~~v~p~~~~ 57 (285)
T 2f9i_B 30 MTKCPKCKKIMYTKELAENLNVCFNCDH 57 (285)
T ss_dssp EEECTTTCCEEEHHHHHHTTTBCTTTCC
T ss_pred HHhhHhhCCccchhhhHHhcCcCCCCCC
Confidence 4578888877644 4678888876
No 195
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=50.10 E-value=5 Score=24.84 Aligned_cols=25 Identities=20% Similarity=0.566 Sum_probs=18.9
Q ss_pred CcEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCC
Q 033949 20 GAGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLL 65 (107)
Q Consensus 20 ~~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~ 65 (107)
.-+.|..||+ +++ .+...|..||..
T Consensus 15 tHtlCrRCG~~syH---------------------~qK~~Ca~CGyp 40 (94)
T 3iz5_l 15 THTLCVRCGRRSFH---------------------LQKSTCSSCGYP 40 (94)
T ss_dssp SEEECTTTCSEEEE---------------------GGGTEETTTCSS
T ss_pred ccceecCcCchhhh---------------------cccccccccCCc
Confidence 3467999999 652 356789999985
No 196
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=50.07 E-value=4.5 Score=32.71 Aligned_cols=9 Identities=22% Similarity=0.722 Sum_probs=0.0
Q ss_pred eeCCCCCCC
Q 033949 57 LFCNNCNLL 65 (107)
Q Consensus 57 ~~C~~CG~~ 65 (107)
..||.||+.
T Consensus 559 ~~CP~Cg~~ 567 (605)
T 1h7b_A 559 FVCSICGET 567 (605)
T ss_dssp ---------
T ss_pred CcCCCCCCC
Confidence 457777754
No 197
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=50.07 E-value=2.4 Score=24.36 Aligned_cols=12 Identities=17% Similarity=0.564 Sum_probs=7.5
Q ss_pred ceeCCCCCCCCC
Q 033949 56 ALFCNNCNLLFP 67 (107)
Q Consensus 56 ~~~C~~CG~~~~ 67 (107)
...|+.|+..+.
T Consensus 36 ~~~C~~C~~~f~ 47 (96)
T 2dmd_A 36 PYKCKTCDYAAA 47 (96)
T ss_dssp SEECSSSCCEES
T ss_pred CEeCCCCCCccC
Confidence 456777776663
No 198
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.03 E-value=7 Score=23.54 Aligned_cols=12 Identities=25% Similarity=0.750 Sum_probs=7.4
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.|++.+..
T Consensus 59 ~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 59 SQCPLCKNDITK 70 (112)
T ss_dssp CCCTTTSCCCCT
T ss_pred CCCcCCCCcCCH
Confidence 357777766554
No 199
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=49.56 E-value=4.4 Score=29.72 Aligned_cols=11 Identities=27% Similarity=1.044 Sum_probs=7.0
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..|| ||..+.+
T Consensus 183 P~C~-Cgg~lrP 193 (290)
T 3u31_A 183 PECP-CGGIFKP 193 (290)
T ss_dssp CBCT-TSCBEEE
T ss_pred CCCC-CCCEECC
Confidence 4577 7766654
No 200
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=49.38 E-value=3.5 Score=30.98 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=0.0
Q ss_pred ceeCCCCCCCCC
Q 033949 56 ALFCNNCNLLFP 67 (107)
Q Consensus 56 ~~~C~~CG~~~~ 67 (107)
...|..|+..+.
T Consensus 375 ~~~c~~c~~~f~ 386 (434)
T 3mpx_A 375 VMMCMNCGCDFS 386 (434)
T ss_dssp ------------
T ss_pred CCcCCCcCCCCC
Confidence 444555555553
No 201
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=49.35 E-value=18 Score=25.55 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=8.6
Q ss_pred eecCCCcEECCCCCC
Q 033949 15 RVLKSGAGRCINCGS 29 (107)
Q Consensus 15 ~~~~~~~~~C~~Cg~ 29 (107)
++.-.....|+.|+.
T Consensus 32 ~i~~~r~~~C~~C~G 46 (248)
T 1nlt_A 32 KLALNKQILCKECEG 46 (248)
T ss_dssp EEEEEEEEECTTTTT
T ss_pred EEEeeEEEeCCCCcC
Confidence 333344556777776
No 202
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=49.19 E-value=0.75 Score=33.60 Aligned_cols=12 Identities=50% Similarity=1.157 Sum_probs=7.4
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.||..+.+
T Consensus 164 P~C~~Cgg~lrP 175 (289)
T 1q1a_A 164 VKCDVCGELVKP 175 (289)
T ss_dssp CBCTTTCCBEEE
T ss_pred ccCCCCCCEECC
Confidence 457777766554
No 203
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=48.74 E-value=11 Score=18.21 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=7.7
Q ss_pred ceeCCCCCCCCC
Q 033949 56 ALFCNNCNLLFP 67 (107)
Q Consensus 56 ~~~C~~CG~~~~ 67 (107)
-..|+.||..+.
T Consensus 10 ~~~C~~C~k~f~ 21 (45)
T 2epq_A 10 PYSCPVCGLRFK 21 (45)
T ss_dssp SSEETTTTEECS
T ss_pred CCcCCCCCcccC
Confidence 346777777763
No 204
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=48.60 E-value=29 Score=18.30 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=4.8
Q ss_pred ccccCCceec
Q 033949 85 KCRFCDRLVE 94 (107)
Q Consensus 85 ~C~~CG~~i~ 94 (107)
.||.|.+.+.
T Consensus 39 ~CP~Cr~~~~ 48 (56)
T 1bor_A 39 QCPICQAPWP 48 (56)
T ss_dssp SCSSCCSSSS
T ss_pred CCCcCCcEee
Confidence 4555554443
No 205
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=48.55 E-value=2.1 Score=25.18 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=7.1
Q ss_pred CcEECCCCCC
Q 033949 20 GAGRCINCGS 29 (107)
Q Consensus 20 ~~~~C~~Cg~ 29 (107)
....||-|..
T Consensus 12 ~~~~C~IC~~ 21 (92)
T 3ztg_A 12 DELLCLICKD 21 (92)
T ss_dssp TTTEETTTTE
T ss_pred cCCCCCCCCh
Confidence 4567888877
No 206
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.33 E-value=4.9 Score=22.42 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=5.8
Q ss_pred CcEECCCCCC
Q 033949 20 GAGRCINCGS 29 (107)
Q Consensus 20 ~~~~C~~Cg~ 29 (107)
....|+-|..
T Consensus 14 ~~~~C~IC~~ 23 (71)
T 2d8t_A 14 TVPECAICLQ 23 (71)
T ss_dssp SCCBCSSSSS
T ss_pred CCCCCccCCc
Confidence 3455666665
No 207
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=48.12 E-value=11 Score=22.77 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.1
Q ss_pred ccccccCCceecCCCccCcCCCCC
Q 033949 83 VSKCRFCDRLVEPDFSFCPYCGSA 106 (107)
Q Consensus 83 ~~~C~~CG~~i~~~~~fCP~CG~~ 106 (107)
.-.|+.|.....++...|..|+++
T Consensus 65 ~W~C~~C~~~N~a~~~~C~~C~~p 88 (92)
T 3gj8_B 65 SWDCEVCLVQNKADSTKCIACESA 88 (92)
T ss_dssp CEECTTTCCEECSSCSBCTTTCCB
T ss_pred cccCCcCCcCChhhcccccccCCC
Confidence 457999999999999999999874
No 208
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.84 E-value=6.1 Score=26.63 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=23.0
Q ss_pred EECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCC
Q 033949 22 GRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSL 70 (107)
Q Consensus 22 ~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~ 70 (107)
+.|+.|++ .-++.+. =..+...+.|..||+.-.++.
T Consensus 104 VlC~~C~sPdT~L~~~-------------~~~r~~~l~C~ACGa~~~V~~ 140 (157)
T 2e9h_A 104 VLCPECENPETDLHVN-------------PKKQTIGNSCKACGYRGMLDT 140 (157)
T ss_dssp TSCTTTCCSCCEEEEE-------------TTTTEEEEECSSSCCEEECCC
T ss_pred EECCCCCCCccEEEEe-------------cCCCEEEEEccCCCCCCcccc
Confidence 57999999 3222220 012335889999999877654
No 209
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=47.71 E-value=3.3 Score=25.89 Aligned_cols=7 Identities=43% Similarity=0.947 Sum_probs=3.4
Q ss_pred ccccCCc
Q 033949 85 KCRFCDR 91 (107)
Q Consensus 85 ~C~~CG~ 91 (107)
.|+.||.
T Consensus 69 FC~~CGs 75 (118)
T 3fac_A 69 FCRTCGI 75 (118)
T ss_dssp EETTTCC
T ss_pred ECCCCCc
Confidence 4555544
No 210
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=47.70 E-value=1.5 Score=33.29 Aligned_cols=12 Identities=50% Similarity=1.157 Sum_probs=7.9
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.||..+.+
T Consensus 172 P~Cp~Cgg~lrP 183 (361)
T 1q14_A 172 VKCDVCGELVKP 183 (361)
T ss_dssp CBCTTTCCBEEE
T ss_pred CCCcCCCCEeCC
Confidence 467777776654
No 211
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=47.28 E-value=20 Score=20.32 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=9.5
Q ss_pred eecCCCcEECCCCCC
Q 033949 15 RVLKSGAGRCINCGS 29 (107)
Q Consensus 15 ~~~~~~~~~C~~Cg~ 29 (107)
++.-.....|+.|+.
T Consensus 5 ~i~~~~~~~C~~C~G 19 (79)
T 1exk_A 5 EIRIPTLEECDVCHG 19 (79)
T ss_dssp SCCCCCEEECGGGTT
T ss_pred EEEcccceECCCCcc
Confidence 344455667777777
No 212
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=47.17 E-value=3.5 Score=26.17 Aligned_cols=21 Identities=19% Similarity=0.679 Sum_probs=14.5
Q ss_pred ccccccCCceecC-------CCccCcCC
Q 033949 83 VSKCRFCDRLVEP-------DFSFCPYC 103 (107)
Q Consensus 83 ~~~C~~CG~~i~~-------~~~fCP~C 103 (107)
.-.|..||.+|+. .+.+|-.|
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~C 83 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHC 83 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHH
Confidence 3468888888754 67777655
No 213
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=46.90 E-value=2 Score=26.82 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.2
Q ss_pred CccccccCCceecCCCccCcCCCCCC
Q 033949 82 DVSKCRFCDRLVEPDFSFCPYCGSAL 107 (107)
Q Consensus 82 ~~~~C~~CG~~i~~~~~fCP~CG~~l 107 (107)
+.+-|-+|-..+.....+||-|+.+|
T Consensus 46 dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 46 NHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp SCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred chhhHHHHHHHHHhhccCCcccCCcC
Confidence 35789999999999999999998765
No 214
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.75 E-value=21 Score=19.57 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=5.6
Q ss_pred cccccCCceec
Q 033949 84 SKCRFCDRLVE 94 (107)
Q Consensus 84 ~~C~~CG~~i~ 94 (107)
..|..|+..+.
T Consensus 34 F~C~~C~~~L~ 44 (72)
T 1wyh_A 34 FLCSGCEQPLG 44 (72)
T ss_dssp CBCTTTCCBTT
T ss_pred CeECCCCCcCC
Confidence 34555555544
No 215
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.61 E-value=26 Score=19.60 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=23.2
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..+... .....+. ....-..|..|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~--~v~a~~~~~H~~CF~C~~C~~~L~~ 53 (80)
T 2cuq_A 14 FAPRCARCSKTLTQG--GVTYRDQPWHRECLVCTGCQTPLAG 53 (80)
T ss_dssp SSCCCTTTCCCCCSC--CEESSSSEECTTTCBCSSSCCBCTT
T ss_pred cCCcCCCCCCEecCc--EEEECCchhhhhhCCcccCCCcCCC
Confidence 567899999987532 1111111 12234679999998864
No 216
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=45.85 E-value=9.6 Score=23.25 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=5.9
Q ss_pred cEECCCCCC
Q 033949 21 AGRCINCGS 29 (107)
Q Consensus 21 ~~~C~~Cg~ 29 (107)
...|+-|..
T Consensus 15 ~~~C~iC~~ 23 (115)
T 3l11_A 15 ECQCGICME 23 (115)
T ss_dssp HHBCTTTCS
T ss_pred CCCCccCCc
Confidence 456777776
No 217
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=45.83 E-value=15 Score=18.29 Aligned_cols=21 Identities=29% Similarity=0.562 Sum_probs=13.4
Q ss_pred ccccCCceecCCCccCcCCCC
Q 033949 85 KCRFCDRLVEPDFSFCPYCGS 105 (107)
Q Consensus 85 ~C~~CG~~i~~~~~fCP~CG~ 105 (107)
.|+.|=....+++..|.-|.+
T Consensus 9 ~C~~C~v~N~~~~~kC~aCet 29 (34)
T 3gj5_B 9 DCEVCLVQNKADSTKCIACES 29 (34)
T ss_dssp ECTTTCCEECSSCSBCTTTCC
T ss_pred ECCeeEeECccccCEEcccCC
Confidence 466666666666666666654
No 218
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=45.60 E-value=2.1 Score=27.14 Aligned_cols=21 Identities=24% Similarity=0.648 Sum_probs=13.2
Q ss_pred ccccccCC-ceecCCCccCcCC
Q 033949 83 VSKCRFCD-RLVEPDFSFCPYC 103 (107)
Q Consensus 83 ~~~C~~CG-~~i~~~~~fCP~C 103 (107)
..+|-=|| .+-..+|-||-+|
T Consensus 57 ~~rCIiCg~~~g~~dAYYC~eC 78 (109)
T 2k0a_A 57 AKNCIICNLNVGVNDAFYCWEC 78 (109)
T ss_dssp TSBCTTTSSSBCCEECEECHHH
T ss_pred CCceEEcCCCCCcccceehHhh
Confidence 45677777 5545567777655
No 219
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=45.16 E-value=17 Score=19.91 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=5.7
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
.+.|+.|....
T Consensus 10 ~W~Cp~CTf~N 20 (52)
T 2crc_A 10 GWQCPGCTFIN 20 (52)
T ss_dssp SBCCTTTCCCB
T ss_pred CccCCCccccc
Confidence 44555555544
No 220
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=45.00 E-value=10 Score=20.19 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=18.0
Q ss_pred ceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCceecC
Q 033949 56 ALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~~ 95 (107)
-..|+.||..+....... ..+.....+.|+.||.....
T Consensus 14 ~~~C~~C~k~F~~~~~l~--~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQ--LFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp EEECSSSCCEEEHHHHHH--HEETTTTEEBCSSSCCBCEE
T ss_pred CccCCCCCchhccHHHhH--hhcCCCCCEECCCCCCcccc
Confidence 456888887653211000 00000124668778776543
No 221
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=44.90 E-value=3.6 Score=23.52 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=7.7
Q ss_pred ceeCCCCCCCCC
Q 033949 56 ALFCNNCNLLFP 67 (107)
Q Consensus 56 ~~~C~~CG~~~~ 67 (107)
...|+.|+..+.
T Consensus 35 ~~~C~~C~~~f~ 46 (95)
T 2yt9_A 35 PYSCPVCGLRFK 46 (95)
T ss_dssp SEECSSSCCEES
T ss_pred CCcCCCCCCccC
Confidence 456777776664
No 222
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=44.81 E-value=11 Score=26.39 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=20.0
Q ss_pred CcEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCC
Q 033949 20 GAGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLF 66 (107)
Q Consensus 20 ~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~ 66 (107)
....||.||.+- . |.++ .+ ....|.+||+..
T Consensus 13 ~~~~CP~Cg~~d------~-~~~~--------~d-g~~~C~~Cg~~~ 43 (255)
T 1nui_A 13 YHIPCDNCGSSD------G-NSLF--------SD-GHTFCYVCEKWT 43 (255)
T ss_dssp EEECCSSSCCSS------C-EEEE--------TT-SCEEETTTCCEE
T ss_pred cCCcCCCCCCCC------C-ceEe--------CC-CCeecccCCCcC
Confidence 356799999942 1 2222 13 358999999763
No 223
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=44.49 E-value=13 Score=20.77 Aligned_cols=12 Identities=17% Similarity=0.645 Sum_probs=6.2
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.|.+++..
T Consensus 53 ~~CP~Cr~~~~~ 64 (78)
T 2ect_A 53 DSCPVCRKSLTG 64 (78)
T ss_dssp CSCTTTCCCCCC
T ss_pred CcCcCcCCccCC
Confidence 345656555543
No 224
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=44.44 E-value=16 Score=22.38 Aligned_cols=8 Identities=25% Similarity=0.878 Sum_probs=4.0
Q ss_pred ccccCCce
Q 033949 85 KCRFCDRL 92 (107)
Q Consensus 85 ~C~~CG~~ 92 (107)
.|++||..
T Consensus 67 ~C~~Cg~~ 74 (92)
T 2kwq_A 67 HCSTCGLF 74 (92)
T ss_dssp CCTTTCSC
T ss_pred CCCCCCCC
Confidence 45555543
No 225
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.06 E-value=38 Score=19.73 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=21.3
Q ss_pred CceeCCCCCCCC--CCCCCCCCCCC-CCccCccccccCCceec
Q 033949 55 PALFCNNCNLLF--PSSLPPPPPPP-PLVSDVSKCRFCDRLVE 94 (107)
Q Consensus 55 ~~~~C~~CG~~~--~~~~~~~~~~~-~~~~~~~~C~~CG~~i~ 94 (107)
....|+.||..+ ........... ...+..+.|+.||....
T Consensus 49 ~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~ 91 (115)
T 2dmi_A 49 NHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFE 91 (115)
T ss_dssp CCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCS
T ss_pred CCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccC
Confidence 345599999887 33221111110 11224578988887654
No 226
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.96 E-value=12 Score=19.53 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=4.7
Q ss_pred cEECCCCCC
Q 033949 21 AGRCINCGS 29 (107)
Q Consensus 21 ~~~C~~Cg~ 29 (107)
...|+-|..
T Consensus 15 ~~~C~IC~~ 23 (58)
T 2ecj_A 15 EASCSVCLE 23 (58)
T ss_dssp CCBCSSSCC
T ss_pred CCCCccCCc
Confidence 344555555
No 227
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=43.72 E-value=22 Score=26.16 Aligned_cols=9 Identities=22% Similarity=0.460 Sum_probs=7.1
Q ss_pred cEECCCCCC
Q 033949 21 AGRCINCGS 29 (107)
Q Consensus 21 ~~~C~~Cg~ 29 (107)
.+.||.||+
T Consensus 268 ~~~C~~C~~ 276 (309)
T 1pqv_S 268 RFTCGKCKE 276 (309)
T ss_pred cccCCCCCC
Confidence 567888888
No 228
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=43.71 E-value=15 Score=23.55 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=25.3
Q ss_pred CCcEECC--CCCCCcEEEEEeeEEEEEEEeeeecC
Q 033949 19 SGAGRCI--NCGSTADLVEYEKVLKAFFVPVWKWP 51 (107)
Q Consensus 19 ~~~~~C~--~Cg~~~~~~~~~~~f~lFFIP~~~~~ 51 (107)
.+.+.|- +||..|.....++-+. +|+++..
T Consensus 57 ~g~I~C~~~~Cg~~WG~~m~yk~~~---LP~LkI~ 88 (121)
T 3lrr_A 57 RAKIFCARQNCSHDWGIHVKYKTFE---IPVIKIE 88 (121)
T ss_dssp EEEEEECSTTTCCEEEEEEEETTEE---EEEECGG
T ss_pred CcEEEeCccccChhhhheEEecccc---CceEEEE
Confidence 3577899 9999999999888877 6988865
No 229
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=43.16 E-value=4.6 Score=26.90 Aligned_cols=20 Identities=20% Similarity=0.529 Sum_probs=14.1
Q ss_pred cccccCCceecC-------CCccCcCC
Q 033949 84 SKCRFCDRLVEP-------DFSFCPYC 103 (107)
Q Consensus 84 ~~C~~CG~~i~~-------~~~fCP~C 103 (107)
-.|..||.+|+. .+.+|-.|
T Consensus 112 g~C~~Cg~~Ip~~Rl~a~P~a~~Ci~C 138 (151)
T 1tjl_A 112 GYCESCGVEIGIRRLEARPTADLCIDC 138 (151)
T ss_dssp SBCSSSSCBCCHHHHHHCTTCCSCHHH
T ss_pred ceeCCCCCcchHHHHhcCCCcchhHHH
Confidence 468888888754 67777665
No 230
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.12 E-value=7.5 Score=21.92 Aligned_cols=28 Identities=36% Similarity=0.922 Sum_probs=19.3
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCCccCccccccCCceecCCCccCcCC
Q 033949 57 LFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVEPDFSFCPYC 103 (107)
Q Consensus 57 ~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~~~~~fCP~C 103 (107)
..|+.|+..+ |-.|..-|-..-..||.|
T Consensus 31 y~C~~C~~~F-------------------C~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 31 YVCAVCQNVF-------------------CVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp ECCTTTTCCB-------------------CHHHHHTTTTTSCSSSTT
T ss_pred EECCccCcCc-------------------ccchhHHHHhhccCCcCC
Confidence 5688888775 666666666666667666
No 231
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=42.94 E-value=7.3 Score=30.99 Aligned_cols=8 Identities=75% Similarity=2.128 Sum_probs=4.0
Q ss_pred ccCcCCCC
Q 033949 98 SFCPYCGS 105 (107)
Q Consensus 98 ~fCP~CG~ 105 (107)
.+||+||+
T Consensus 57 ~~c~~c~~ 64 (681)
T 2pzi_A 57 GWCPYCGS 64 (681)
T ss_dssp EECTTTCC
T ss_pred CcCCCCCC
Confidence 34555554
No 232
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=42.67 E-value=13 Score=19.11 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=5.6
Q ss_pred CCcEECCCCCC
Q 033949 19 SGAGRCINCGS 29 (107)
Q Consensus 19 ~~~~~C~~Cg~ 29 (107)
.....|+.||.
T Consensus 7 ~~~~~C~~C~~ 17 (39)
T 2i5o_A 7 EDQVPCEKCGS 17 (39)
T ss_dssp CCEEECTTTCC
T ss_pred CCCcccccccC
Confidence 34445555555
No 233
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=42.66 E-value=17 Score=20.81 Aligned_cols=12 Identities=17% Similarity=0.592 Sum_probs=6.8
Q ss_pred ceeCCCCCCCCC
Q 033949 56 ALFCNNCNLLFP 67 (107)
Q Consensus 56 ~~~C~~CG~~~~ 67 (107)
.+.|+.|.....
T Consensus 8 ~W~CP~CTf~N~ 19 (64)
T 3b08_B 8 GWQCPGCTFINK 19 (64)
T ss_dssp SEECTTTCCEEC
T ss_pred CCcCCCccccCC
Confidence 456666665543
No 234
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.63 E-value=35 Score=19.03 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=23.1
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..+... .....+. ....-..|..|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~--~v~a~~~~~H~~CF~C~~C~~~L~~ 53 (80)
T 1x3h_A 14 FSPKCGGCNRPVLEN--YLSAMDTVWHPECFVCGDCFTSFST 53 (80)
T ss_dssp CSCBCTTTCCBCCSS--CEEETTEEECTTTCBCSSSCCBSCS
T ss_pred cCCccccCCCeecce--eEEECCCeEecCcCChhhCCCCCCC
Confidence 456899999987531 1110010 11234679999999865
No 235
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=42.63 E-value=6.1 Score=25.18 Aligned_cols=9 Identities=33% Similarity=0.741 Sum_probs=6.2
Q ss_pred EECCCCCCC
Q 033949 22 GRCINCGST 30 (107)
Q Consensus 22 ~~C~~Cg~~ 30 (107)
..||-|...
T Consensus 54 ~~C~iC~~~ 62 (138)
T 4ayc_A 54 LQCIICSEY 62 (138)
T ss_dssp SBCTTTCSB
T ss_pred CCCcccCcc
Confidence 458888773
No 236
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=42.54 E-value=9.3 Score=25.79 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=19.8
Q ss_pred CceeCCC--CCCCCCCCCCCCCCCCCCccCccccccCCceec
Q 033949 55 PALFCNN--CNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVE 94 (107)
Q Consensus 55 ~~~~C~~--CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~ 94 (107)
.+..||. |++....... ....|+.|+...+
T Consensus 42 ~Y~aC~~~~CnKKv~~~~~----------g~~~CekC~~~~~ 73 (181)
T 1l1o_C 42 MYQACPTQDCNKKVIDQQN----------GLYRCEKCDTEFP 73 (181)
T ss_dssp EEEBCCSTTCCCBCEEETT----------TEEEETTTTEEES
T ss_pred EECCCCchhcCCccccCCC----------CeEECCCCCCcCC
Confidence 4788998 8887642111 2467999987653
No 237
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.46 E-value=21 Score=19.82 Aligned_cols=10 Identities=20% Similarity=0.477 Sum_probs=7.2
Q ss_pred ccccccCCce
Q 033949 83 VSKCRFCDRL 92 (107)
Q Consensus 83 ~~~C~~CG~~ 92 (107)
.++||.|+..
T Consensus 23 kY~CPrC~~~ 32 (56)
T 2yqq_A 23 KYRCPACRVP 32 (56)
T ss_dssp SEECTTTCCE
T ss_pred eeeCCCCCCC
Confidence 4778888765
No 238
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.38 E-value=16 Score=20.40 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=7.0
Q ss_pred ceeCCCCCCCCC
Q 033949 56 ALFCNNCNLLFP 67 (107)
Q Consensus 56 ~~~C~~CG~~~~ 67 (107)
...|+.|-..+.
T Consensus 23 ~~~C~IC~~~~~ 34 (75)
T 1x4j_A 23 QTLCVVCMCDFE 34 (75)
T ss_dssp CCEETTTTEECC
T ss_pred CCCCeECCcccC
Confidence 455666666554
No 239
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.25 E-value=31 Score=18.84 Aligned_cols=7 Identities=43% Similarity=1.175 Sum_probs=3.8
Q ss_pred ECCCCCC
Q 033949 23 RCINCGS 29 (107)
Q Consensus 23 ~C~~Cg~ 29 (107)
+|..|+.
T Consensus 7 ~C~~C~~ 13 (72)
T 1x61_A 7 GCGGCGE 13 (72)
T ss_dssp CCSSSCS
T ss_pred CCccCCC
Confidence 4555555
No 240
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=41.69 E-value=2.8 Score=27.29 Aligned_cols=17 Identities=35% Similarity=0.798 Sum_probs=12.4
Q ss_pred CCceeCCCCCCCCCCCC
Q 033949 54 EPALFCNNCNLLFPSSL 70 (107)
Q Consensus 54 ~~~~~C~~CG~~~~~~~ 70 (107)
++.+.||.||..|+|.+
T Consensus 97 EG~L~Cp~cgr~ypI~~ 113 (125)
T 3q87_A 97 EGSLRCDMCGLIYPIKG 113 (125)
T ss_dssp EEEEEETTTCCEEEEET
T ss_pred EEEEECCCCCCEeeccC
Confidence 36778888888887754
No 241
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=41.48 E-value=4.1 Score=23.82 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=8.6
Q ss_pred ceeCCCCCCCCCC
Q 033949 56 ALFCNNCNLLFPS 68 (107)
Q Consensus 56 ~~~C~~CG~~~~~ 68 (107)
...|+.|+..+..
T Consensus 45 ~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 45 PYTCDICHKAFRR 57 (106)
T ss_dssp CCBCSSSCCBCSC
T ss_pred CcCCCCccchhCC
Confidence 4567777777643
No 242
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=41.26 E-value=19 Score=19.62 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=23.2
Q ss_pred ceeCCCCCCCCCCCCCCCCCCCC-Cc--cCccccccCCceecC
Q 033949 56 ALFCNNCNLLFPSSLPPPPPPPP-LV--SDVSKCRFCDRLVEP 95 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~~~~~~~~-~~--~~~~~C~~CG~~i~~ 95 (107)
...|..|+..+....+.....+. .. ..-..|..|+..+..
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~ 44 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIG 44 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCC
Confidence 35799999987643221111111 12 345679999998864
No 243
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=40.97 E-value=8.8 Score=26.53 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=17.5
Q ss_pred CccccccCCceecC----CCccCcCCCCC
Q 033949 82 DVSKCRFCDRLVEP----DFSFCPYCGSA 106 (107)
Q Consensus 82 ~~~~C~~CG~~i~~----~~~fCP~CG~~ 106 (107)
+...||+||+.+-. +-.+|-.||..
T Consensus 112 ~~~~Cp~Cg~g~fma~h~dR~~CGkC~~t 140 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMAKHYDRHYCGKCHLT 140 (189)
T ss_dssp CSEECSTTCSSCEEEECSSCEEETTTCCC
T ss_pred ccccCCccCCCccccCccCCCccCCceeE
Confidence 45789999976432 55588888753
No 244
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=40.70 E-value=9 Score=28.17 Aligned_cols=21 Identities=29% Similarity=0.755 Sum_probs=11.9
Q ss_pred ccccCCceecC--------CCccCcCCCC
Q 033949 85 KCRFCDRLVEP--------DFSFCPYCGS 105 (107)
Q Consensus 85 ~C~~CG~~i~~--------~~~fCP~CG~ 105 (107)
.|+.||..|.. ..-|||.|-.
T Consensus 253 pC~~CGt~I~~~~~g~~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGENSRMTYFCPHCQK 281 (287)
T ss_dssp BCTTTCCBCEEECSSTTCCCEEECTTTSC
T ss_pred CCCCCCCEEEEEEecCCCCCEEECCCccc
Confidence 56666665543 3446666653
No 245
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=40.64 E-value=13 Score=22.94 Aligned_cols=40 Identities=13% Similarity=0.385 Sum_probs=23.6
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCCC-------ccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPPL-------VSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~~-------~~~~~~C~~CG~~i~~ 95 (107)
.-..|..|+..+.... ....+..+ .....+|..|+..|.+
T Consensus 29 ~CF~C~~C~~~L~~~~-f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEI-YVMVNDKPVCKPCYVKNHAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSE-EEEETTEEEEHHHHHHHSCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCE-EEeECCEEechHHhCcCcCccCcccCCcCCc
Confidence 3567999999876421 11111110 1134689999999985
No 246
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=40.42 E-value=14 Score=19.52 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=6.3
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
+.|..||.+|.-
T Consensus 18 RvC~~CgkPi~l 29 (44)
T 2lo3_A 18 RVCEKCGKPLAL 29 (44)
T ss_dssp EECTTTCCEEET
T ss_pred hhhcccCCcchH
Confidence 455555555543
No 247
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=40.30 E-value=34 Score=21.02 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=21.6
Q ss_pred cEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCC
Q 033949 21 AGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPS 68 (107)
Q Consensus 21 ~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~ 68 (107)
.+.||+|+..-+ +|-.+......|..||.....
T Consensus 5 ~~~c~~c~~~n~---------------~p~~~~~~~~~~~~~~~~~~~ 37 (148)
T 3p2a_A 5 NTVCTACMATNR---------------LPEERIDDGAKCGRCGHSLFD 37 (148)
T ss_dssp EEECTTTCCEEE---------------EESSCSCSCCBCTTTCCBTTC
T ss_pred EEECcccccccC---------------CCCcccccCCcchhcCCcccc
Confidence 567999999221 233333346779999998754
No 248
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=40.23 E-value=22 Score=26.36 Aligned_cols=30 Identities=17% Similarity=0.444 Sum_probs=19.0
Q ss_pred CceeCCCCCCCCC-CCCCCCCCCCCCccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFP-SSLPPPPPPPPLVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~-~~~~~~~~~~~~~~~~~~C~~CG~~i~~ 95 (107)
....|.+|+..+- ... ...+|..||..+-.
T Consensus 356 ~~t~C~~C~~~~~g~~~-----------qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFY-----------QGYRCYRCRAPAHK 386 (406)
T ss_dssp SCCBCTTTCCBCCSSSS-----------CEEEETTTCCEECG
T ss_pred CCCCCccccchhceeCC-----------CCCCCCCCcCccch
Confidence 4567888888762 222 24677777776644
No 249
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=39.83 E-value=18 Score=23.73 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=24.0
Q ss_pred CCcEECCCCCCCcEEEEEeeEEEEEEEeeeecC
Q 033949 19 SGAGRCINCGSTADLVEYEKVLKAFFVPVWKWP 51 (107)
Q Consensus 19 ~~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~ 51 (107)
.+.+.|- ||..|.....++-+. +|+++..
T Consensus 65 ~g~I~C~-Cgq~WG~~m~yk~~~---LP~LkIk 93 (133)
T 3ga3_A 65 NGEIICK-CGQAWGTMMVHKGLD---LPCLKIR 93 (133)
T ss_dssp EEEEEET-TSCEEEEEEEETTEE---EEEECGG
T ss_pred CceEEEe-cCChhhhhEEecccc---CceEEEE
Confidence 3567899 999999998888777 7998865
No 250
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.79 E-value=6.2 Score=21.31 Aligned_cols=7 Identities=57% Similarity=1.497 Sum_probs=3.8
Q ss_pred CccCcCC
Q 033949 97 FSFCPYC 103 (107)
Q Consensus 97 ~~fCP~C 103 (107)
...||.|
T Consensus 57 ~~~CP~C 63 (63)
T 2ysj_A 57 FFKCPLC 63 (63)
T ss_dssp CCCCSCC
T ss_pred CCcCcCC
Confidence 3456655
No 251
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=39.76 E-value=20 Score=18.81 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=5.0
Q ss_pred cccccCCce
Q 033949 84 SKCRFCDRL 92 (107)
Q Consensus 84 ~~C~~CG~~ 92 (107)
..|-.||++
T Consensus 31 ~~C~~C~~p 39 (45)
T 1n0z_A 31 TSCDRCGRE 39 (45)
T ss_dssp SBCSSSCCB
T ss_pred ccccccCCc
Confidence 346666655
No 252
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=39.57 E-value=7.5 Score=28.75 Aligned_cols=22 Identities=5% Similarity=0.098 Sum_probs=14.0
Q ss_pred cccc--cCCceecC------CCccCcCCCC
Q 033949 84 SKCR--FCDRLVEP------DFSFCPYCGS 105 (107)
Q Consensus 84 ~~C~--~CG~~i~~------~~~fCP~CG~ 105 (107)
..|+ .||+.|.. +.-|||.|-.
T Consensus 248 ~pC~~~~CG~~I~~~~~~gR~t~~CP~CQ~ 277 (310)
T 3twl_A 248 KPGKAFVDGKKIDFITAGGRTTAYVPELQK 277 (310)
T ss_dssp CTTSCEETTEECEECCE------ECTTTCC
T ss_pred CCCCCCCCCCeEEEEEECCcccEECCCCcC
Confidence 3577 88888754 6778888854
No 253
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.06 E-value=41 Score=18.88 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=22.0
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..+.. . .....+. ....-..|..|+..+..
T Consensus 14 ~~~~C~~C~~~I~~-~-~~~a~~~~~H~~CF~C~~C~~~L~~ 53 (81)
T 2dlo_A 14 TLEKCATCSQPILD-R-ILRAMGKAYHPGCFTCVVCHRGLDG 53 (81)
T ss_dssp SCCBCTTTCCBCCS-C-CEEETTEEECTTTCBCSSSCCBCTT
T ss_pred CCCccccCCCeecc-e-eEEECCccccHHhcCcccCCCccCC
Confidence 45679999988752 1 1110000 11234679999988753
No 254
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.05 E-value=7.4 Score=22.03 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=19.4
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCceec
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVE 94 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~ 94 (107)
.-+.|+.|+..+...... .....-....+.|++||+.+.
T Consensus 16 r~~~C~~C~~~~~~~~L~-~H~~~c~~~~~~C~~C~~~~~ 54 (75)
T 2d9k_A 16 RLAVCQHCDLELSILKLK-EHEDYCGARTELCGNCGRNVL 54 (75)
T ss_dssp CCEECSSSCCEECHHHHH-HHHHHHHHCEEECSSSCCEEE
T ss_pred cccCCcccChHhhHHHHH-HHHhHcCCCceEcccCCCcCc
Confidence 357788888877321100 000000013467888887654
No 255
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=38.42 E-value=9.1 Score=26.77 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=36.1
Q ss_pred CcEECCCCCCCcEEEEEeeEEEEEEEeeeecCC---CCCceeCCCCCCCCCCCCCCC----CCCCC---CccCccccc--
Q 033949 20 GAGRCINCGSTADLVEYEKVLKAFFVPVWKWPA---KEPALFCNNCNLLFPSSLPPP----PPPPP---LVSDVSKCR-- 87 (107)
Q Consensus 20 ~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~---~~~~~~C~~CG~~~~~~~~~~----~~~~~---~~~~~~~C~-- 87 (107)
-.+.||.|+.... |=.++.-+. ....+.|++|++.+....-.. .+... .......|.
T Consensus 21 l~l~Cp~C~~~~~-----------F~gv~~~~~~~~~~sg~~C~~C~~~~~~~~i~nQl~l~iR~~i~~YY~gwlvCdD~ 89 (206)
T 3flo_B 21 LELSCPSCDKRFP-----------FGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDS 89 (206)
T ss_dssp EEEECTTTCCEEE-----------ECSSSCCSSEEEETTEEEETTTCCBCCHHHHHHHHHHHHHHHHHHHHHCCEEESCT
T ss_pred eEEECCCCCCccC-----------CCCcccCCCcccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHhcCCcccCCc
Confidence 3668999998431 112221110 112577999998753100000 00000 012356685
Q ss_pred cCCceecC---CCccCc--CC
Q 033949 88 FCDRLVEP---DFSFCP--YC 103 (107)
Q Consensus 88 ~CG~~i~~---~~~fCP--~C 103 (107)
.||..+.. ....|+ .|
T Consensus 90 ~C~~rTR~lsv~g~rC~~p~C 110 (206)
T 3flo_B 90 TCGIVTRQVSVFGKRCLNDGC 110 (206)
T ss_dssp TTCCEESCCCSSTTBCSSTTC
T ss_pred CCCcccceeeccCCCCCCCCC
Confidence 58888765 466664 56
No 256
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=38.32 E-value=23 Score=21.09 Aligned_cols=19 Identities=21% Similarity=0.712 Sum_probs=8.3
Q ss_pred ccccccCCceecCCCccCcCC
Q 033949 83 VSKCRFCDRLVEPDFSFCPYC 103 (107)
Q Consensus 83 ~~~C~~CG~~i~~~~~fCP~C 103 (107)
.++|..|+. ++....|..|
T Consensus 21 ~Y~C~~C~~--d~tcvlC~~C 39 (82)
T 3nis_A 21 LYRCHECGC--DDTCVLCIHC 39 (82)
T ss_dssp EEEETTTBS--STTCCBCTTT
T ss_pred EEEeeccCC--CCCceEchhh
Confidence 345555553 3333444443
No 257
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=38.31 E-value=21 Score=19.33 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=24.3
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecCC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEPD 96 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~~ 96 (107)
....|..|+..+...+......+. ....-..|..|+..+...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCC
Confidence 567899999987643321111110 112345689999887653
No 258
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=37.72 E-value=30 Score=23.84 Aligned_cols=11 Identities=18% Similarity=-0.094 Sum_probs=5.2
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...||.|...+
T Consensus 208 ~~~c~i~~~~~ 218 (281)
T 2c2l_A 208 YLCGKISFELM 218 (281)
T ss_dssp TTBCTTTCSBC
T ss_pred ccCCcCcCCHh
Confidence 34455555444
No 259
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.63 E-value=25 Score=19.18 Aligned_cols=40 Identities=10% Similarity=0.250 Sum_probs=23.7
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecCC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEPD 96 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~~ 96 (107)
....|..|+..+.. + .....+. ....-..|..|+..+...
T Consensus 4 ~~~~C~~C~~~I~~-~-~~~a~~~~~H~~CF~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG-R-VIKAMNNSWHPECFRCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCCS-C-CEEETTEEECTTTSBCSSSCCBCSSS
T ss_pred CCCcCccCCCEecc-e-EEEECcccccccCCEeCCCCCcCCCC
Confidence 56789999998752 1 1111111 122356799999987763
No 260
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=37.59 E-value=13 Score=23.43 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=16.6
Q ss_pred CccccccCCceecC--CCccCcC
Q 033949 82 DVSKCRFCDRLVEP--DFSFCPY 102 (107)
Q Consensus 82 ~~~~C~~CG~~i~~--~~~fCP~ 102 (107)
..+.||-|||.=+. .-+|||.
T Consensus 70 R~Y~CpiCGATGd~AHT~kYCP~ 92 (106)
T 3alr_A 70 RQYKCPLCGATGAKAHTKRFCPM 92 (106)
T ss_dssp GGCCCTTTCCCGGGCCCGGGCTT
T ss_pred ccccCCCCCCcCCcccceecCCC
Confidence 36889999998655 6788984
No 261
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=37.23 E-value=9.8 Score=26.85 Aligned_cols=43 Identities=21% Similarity=0.437 Sum_probs=19.8
Q ss_pred cCCCCCceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCceecC
Q 033949 50 WPAKEPALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 50 ~~~~~~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~~ 95 (107)
.+-+-....|..|+..++.+.....+.. .....||.||..+.+
T Consensus 115 lHG~~~~~~C~~C~~~~~~~~~~~~~~~---~~~p~C~~Cgg~lrP 157 (246)
T 1yc5_A 115 LHGNVEEYYCVRCEKKYTVEDVIKKLES---SDVPLCDDCNSLIRP 157 (246)
T ss_dssp TTEEEEEEEETTTCCEEEHHHHHHHTTT---CSSCBCTTTCCBEEE
T ss_pred ecCccceeEcCCCCCCCcHHHHHHHhcc---CCCCCCCCCCCccCc
Confidence 3333346667777775532110000000 013467777776655
No 262
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=37.00 E-value=16 Score=23.46 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=21.0
Q ss_pred CCcEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCC
Q 033949 19 SGAGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSS 69 (107)
Q Consensus 19 ~~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~ 69 (107)
.+-.+|+.|||-++++. ..+..+.| ||..++.-
T Consensus 5 ~~fYkC~~CGnivev~~----------------~g~~~l~C--CG~~m~~l 37 (126)
T 1vzi_A 5 LQVYKCEVCGNIVEVLN----------------GGIGELVC--CNQDMKLM 37 (126)
T ss_dssp TCEEECTTTCCEEEEEE----------------CCSSCEEE--TTEECEEC
T ss_pred CcEEEcCCCCeEEEEEc----------------CCCcceec--CCcccccc
Confidence 34568999999443222 23356777 99988653
No 263
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.90 E-value=20 Score=20.00 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=23.8
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..+...+.. ...+. ....-..|..|+..+..
T Consensus 8 ~~~~C~~C~~~I~~~~~v-~a~~~~~H~~CF~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKV-SSLGKDWHKFCLKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEE-EETTEEEETTTCBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEE-EECCeEeeCCCCCCCCCCCccCC
Confidence 467899999987643211 00000 11234679999998875
No 264
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.90 E-value=15 Score=21.43 Aligned_cols=14 Identities=21% Similarity=0.505 Sum_probs=9.4
Q ss_pred CceeCCCCCCCCCC
Q 033949 55 PALFCNNCNLLFPS 68 (107)
Q Consensus 55 ~~~~C~~CG~~~~~ 68 (107)
.-..|..|+..+..
T Consensus 41 ~CF~C~~C~~~L~~ 54 (91)
T 2d8y_A 41 SCFRCSYCNNKLSL 54 (91)
T ss_dssp TTCBCTTTCCBCCT
T ss_pred CCCeeCCCCCCCCC
Confidence 34568888877754
No 265
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=36.63 E-value=21 Score=21.54 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=6.7
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.||..+..
T Consensus 64 ~~cP~~~~~l~~ 75 (100)
T 2kre_A 64 PTDPFNRQTLTE 75 (100)
T ss_dssp SBCSSSCCBCCT
T ss_pred CCCCCCCCCCCh
Confidence 456666665543
No 266
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=36.56 E-value=24 Score=20.25 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=14.7
Q ss_pred ceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCcee
Q 033949 56 ALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLV 93 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i 93 (107)
-..|.+||..+ .. ..+.|..||...
T Consensus 35 pt~C~~C~~~l-~~------------qG~kC~~C~~~c 59 (72)
T 2fnf_X 35 PGWCDLCGREV-LR------------QALRCANCKFTC 59 (72)
T ss_dssp CCBCTTTSSBC-SS------------CCEECTTSSCEE
T ss_pred CcchhhhhHHH-Hh------------CcCccCCCCCee
Confidence 45577777776 21 135677666554
No 267
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=36.51 E-value=7.3 Score=27.38 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=4.8
Q ss_pred cEECCCCCC
Q 033949 21 AGRCINCGS 29 (107)
Q Consensus 21 ~~~C~~Cg~ 29 (107)
...|..|+.
T Consensus 113 ~~~C~~C~~ 121 (235)
T 1s5p_A 113 KVRCSQSGQ 121 (235)
T ss_dssp EEEETTTCC
T ss_pred EEEeCCCCC
Confidence 344666655
No 268
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=36.48 E-value=6.4 Score=26.98 Aligned_cols=11 Identities=27% Similarity=0.615 Sum_probs=6.7
Q ss_pred CccCcCCCCCC
Q 033949 97 FSFCPYCGSAL 107 (107)
Q Consensus 97 ~~fCP~CG~~l 107 (107)
-.||+.||++|
T Consensus 98 r~FC~~CGs~l 108 (196)
T 1x6m_A 98 RHRCRDCGVHM 108 (196)
T ss_dssp EEEETTTCCEE
T ss_pred eEECCCCCCcC
Confidence 35677777653
No 269
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.37 E-value=16 Score=21.01 Aligned_cols=10 Identities=30% Similarity=0.986 Sum_probs=7.0
Q ss_pred CcEECCCCCC
Q 033949 20 GAGRCINCGS 29 (107)
Q Consensus 20 ~~~~C~~Cg~ 29 (107)
..-.|..|+.
T Consensus 14 ~~~~C~~C~~ 23 (80)
T 2dj7_A 14 GPSHCAGCKE 23 (80)
T ss_dssp SCSCCTTTCC
T ss_pred CCCCCcCcCC
Confidence 4456888887
No 270
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=36.35 E-value=11 Score=23.33 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=12.8
Q ss_pred CccccccCCceecCCC
Q 033949 82 DVSKCRFCDRLVEPDF 97 (107)
Q Consensus 82 ~~~~C~~CG~~i~~~~ 97 (107)
..+.|.+||.+|..+|
T Consensus 74 ~YRvCn~CGkPI~l~A 89 (96)
T 3mhs_E 74 QYRVCEKCGKPLALTA 89 (96)
T ss_dssp CCEEETTTCCEECGGG
T ss_pred cchhhhccCCceeHHH
Confidence 4678999999987654
No 271
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.25 E-value=38 Score=19.01 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=28.4
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecCC-------C-ccCcCCCCC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEPD-------F-SFCPYCGSA 106 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~~-------~-~fCP~CG~~ 106 (107)
....|..|+..+.. + .....+. ....-..|..|+..+..+ . .+|..|..+
T Consensus 14 ~~~~C~~C~~~I~~-~-~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~ 72 (81)
T 1v6g_A 14 YGTRCFSCDQFIEG-E-VVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLP 72 (81)
T ss_dssp CCCBCTTTCCBCCS-C-CEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSC
T ss_pred hCCcCccccCEecc-c-eEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcc
Confidence 45689999998762 1 1111110 112346799999988642 1 266666544
No 272
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=36.12 E-value=9.4 Score=30.00 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=20.5
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCCccCccccccCCceecC---CCccCcCCCCC
Q 033949 57 LFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVEP---DFSFCPYCGSA 106 (107)
Q Consensus 57 ~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~~---~~~fCP~CG~~ 106 (107)
-.||.||..-+- ...|.+||+.+.+ ....|.-||++
T Consensus 156 g~cp~c~~~~~~--------------gd~ce~cg~~~~~~~l~~~~~~~~g~~ 194 (560)
T 3h99_A 156 GTCPKCKSPDQY--------------GDNCEVCGATYSPTELIEPKSVVSGAT 194 (560)
T ss_dssp EECTTTCCSSEE--------------TTBCTTTCCBCCGGGCEEEEETTTCCC
T ss_pred CCCCCCCCcccc--------------cchhhhccccCChhhhcCCccccCCCC
Confidence 358888864211 2357777776544 23456666654
No 273
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=35.82 E-value=12 Score=20.44 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=8.5
Q ss_pred ccccCCceecCCCccCcCCC
Q 033949 85 KCRFCDRLVEPDFSFCPYCG 104 (107)
Q Consensus 85 ~C~~CG~~i~~~~~fCP~CG 104 (107)
.|+.|+..=....+-|+.|+
T Consensus 11 ~C~~C~GsG~~i~~~C~~C~ 30 (53)
T 3lcz_A 11 TCPNCNGSGREEPEPCPKCL 30 (53)
T ss_dssp ECTTTTTSCEETTEECTTTT
T ss_pred cCcCCcccccCCCCcCCCCC
Confidence 45555333222224455554
No 274
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.37 E-value=62 Score=18.31 Aligned_cols=8 Identities=38% Similarity=0.995 Sum_probs=4.6
Q ss_pred EECCCCCC
Q 033949 22 GRCINCGS 29 (107)
Q Consensus 22 ~~C~~Cg~ 29 (107)
.+|..|+.
T Consensus 16 ~~C~~C~~ 23 (82)
T 2co8_A 16 DLCALCGE 23 (82)
T ss_dssp CBCSSSCC
T ss_pred CCCcccCC
Confidence 35666666
No 275
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=35.27 E-value=16 Score=24.04 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=18.7
Q ss_pred Ccccccc--CCceec----CCCccCcCCCCC
Q 033949 82 DVSKCRF--CDRLVE----PDFSFCPYCGSA 106 (107)
Q Consensus 82 ~~~~C~~--CG~~i~----~~~~fCP~CG~~ 106 (107)
+...||+ ||+-+- .+-.+|-.||..
T Consensus 117 ~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t 147 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANHKDRLYCGKCHSV 147 (152)
T ss_dssp CSCBCCSTTSCSSSBEEECSSCEEESSSSSC
T ss_pred CcCcCCCccCCCceEecccCCCcccCCCceE
Confidence 4678999 999542 266789999864
No 276
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=35.20 E-value=13 Score=26.42 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=21.0
Q ss_pred ecCCCCCceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCc-eecC
Q 033949 49 KWPAKEPALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDR-LVEP 95 (107)
Q Consensus 49 ~~~~~~~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~-~i~~ 95 (107)
.++-+-....|..|+..++.+.....+. ......||.||. .+.+
T Consensus 116 elHG~~~~~~C~~C~~~~~~~~~~~~~~---~~~~p~C~~Cgg~~lrP 160 (253)
T 1ma3_A 116 ELHGSMDKLDCLDCHETYDWSEFVEDFN---KGEIPRCRKCGSYYVKP 160 (253)
T ss_dssp ETTEEEEEEEETTTCCEEEGGGTHHHHH---TTCCCCCTTTCCSCEEE
T ss_pred EeCCCcCeeeeCCCCCcCcHHHHHHHhc---cCCCCCCCCCCCccccc
Confidence 3443434677888887654322100000 001246777777 5554
No 277
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.05 E-value=26 Score=19.02 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=23.2
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..+... .....+. ....-..|..|+..+..
T Consensus 4 ~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~~ 43 (69)
T 2cur_A 4 GSSGCVKCNKAITSG--GITYQDQPWHADCFVCVTCSKKLAG 43 (69)
T ss_dssp CCCCCSSSCCCCCTT--CEEETTEEECTTTTBCTTTCCBCTT
T ss_pred CcCCCcccCCEeCcc--eEEECccccccCcCEECCCCCCCCC
Confidence 567899999987531 1111111 12234679999998864
No 278
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=34.97 E-value=25 Score=23.32 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=25.1
Q ss_pred CCcEECC--CCCCCcEEEEEeeEEEEEEEeeeecC
Q 033949 19 SGAGRCI--NCGSTADLVEYEKVLKAFFVPVWKWP 51 (107)
Q Consensus 19 ~~~~~C~--~Cg~~~~~~~~~~~f~lFFIP~~~~~ 51 (107)
.+.+.|- +||+.|.....++-+. +|+++..
T Consensus 79 ~g~I~C~~~~Cg~~WG~~m~yk~~~---lP~LkIk 110 (145)
T 2qfd_A 79 RAKIFCARQNCSHDWGIHVKYKTFE---IPVIKIE 110 (145)
T ss_dssp EEEEEECSTTTCCEEEEEEEETTEE---EEEECGG
T ss_pred CceEEeCCcccCcchhceEEEcccc---CceEEEE
Confidence 3577898 9999999998888777 8988865
No 279
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=34.82 E-value=4.4 Score=25.13 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=8.0
Q ss_pred ccccCCceecC
Q 033949 85 KCRFCDRLVEP 95 (107)
Q Consensus 85 ~C~~CG~~i~~ 95 (107)
.||.|++.+..
T Consensus 55 ~CP~Cr~~~~~ 65 (118)
T 3hct_A 55 KCPVDNEILLE 65 (118)
T ss_dssp BCTTTCCBCCG
T ss_pred CCCCCCCCcCH
Confidence 68888777654
No 280
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=34.51 E-value=5.6 Score=25.90 Aligned_cols=51 Identities=20% Similarity=0.368 Sum_probs=28.1
Q ss_pred CceeCCCCCCCCCCCCCCCCCCC-CCccCccccccCCceecC--------------CCccCcCCCC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPP-PLVSDVSKCRFCDRLVEP--------------DFSFCPYCGS 105 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~-~~~~~~~~C~~CG~~i~~--------------~~~fCP~CG~ 105 (107)
....|+.||..+........... ........|+.||..... ..-.|+.||.
T Consensus 48 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 113 (190)
T 2i13_A 48 KPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGK 113 (190)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCC
T ss_pred CCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCC
Confidence 35679999988754221000000 001134689999988755 1235888875
No 281
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=34.45 E-value=22 Score=20.63 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=5.9
Q ss_pred cccccCCceec
Q 033949 84 SKCRFCDRLVE 94 (107)
Q Consensus 84 ~~C~~CG~~i~ 94 (107)
..||-||..+.
T Consensus 49 ~~cP~~~~~l~ 59 (85)
T 2kr4_A 49 PTDPFNRQMLT 59 (85)
T ss_dssp SBCTTTCCBCC
T ss_pred CCCCCCcCCCC
Confidence 35666665543
No 282
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=34.40 E-value=18 Score=20.22 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=7.6
Q ss_pred CceeCCCCCCCC
Q 033949 55 PALFCNNCNLLF 66 (107)
Q Consensus 55 ~~~~C~~CG~~~ 66 (107)
+..+|..|+...
T Consensus 34 q~~kC~dC~~~c 45 (61)
T 4b6d_A 34 LSLKCRDCRVVS 45 (61)
T ss_dssp EEEEESSSSCEE
T ss_pred EeeECCCCCCeE
Confidence 466777776553
No 283
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=34.35 E-value=43 Score=19.16 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=8.3
Q ss_pred CccccccCCcee
Q 033949 82 DVSKCRFCDRLV 93 (107)
Q Consensus 82 ~~~~C~~CG~~i 93 (107)
+.+.||.|...+
T Consensus 48 lkKycp~c~kHt 59 (66)
T 3bbo_3 48 LRKFCPYCYKHT 59 (66)
T ss_dssp CCCCCCSSSSCC
T ss_pred EEccCCCCCCee
Confidence 456788887654
No 284
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=34.11 E-value=20 Score=28.32 Aligned_cols=11 Identities=18% Similarity=0.721 Sum_probs=7.1
Q ss_pred CcEECCCCCCC
Q 033949 20 GAGRCINCGST 30 (107)
Q Consensus 20 ~~~~C~~Cg~~ 30 (107)
....|..||..
T Consensus 298 ~~~~C~~Cg~~ 308 (492)
T 4iao_A 298 ATATCVTCHWN 308 (492)
T ss_dssp TEEEETTTCCE
T ss_pred ceeecCCCCCc
Confidence 45567777763
No 285
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=33.93 E-value=9.8 Score=20.31 Aligned_cols=9 Identities=56% Similarity=1.457 Sum_probs=5.8
Q ss_pred cEECCCCCC
Q 033949 21 AGRCINCGS 29 (107)
Q Consensus 21 ~~~C~~Cg~ 29 (107)
...|.+|+.
T Consensus 4 ~~~C~~C~t 12 (46)
T 1gnf_A 4 ARECVNCGA 12 (46)
T ss_dssp SCCCTTTCC
T ss_pred CCCCCCcCC
Confidence 345777777
No 286
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=33.69 E-value=38 Score=22.05 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=23.3
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCCC-------ccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPPL-------VSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~~-------~~~~~~C~~CG~~i~~ 95 (107)
.-..|..|+..+.... . ..+..+ .....+|..|+..|..
T Consensus 32 ~CF~C~~C~~~L~~~~-f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERC-F-SRGESVYCKDDFFKRFGTKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCC-E-ESSSCEECHHHHHHHHSCBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCC-c-ccCCeeeecccccccccccccccccccCC
Confidence 3567999998876532 1 111111 1124679999998875
No 287
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.56 E-value=20 Score=19.69 Aligned_cols=7 Identities=29% Similarity=0.952 Sum_probs=4.3
Q ss_pred ECCCCCC
Q 033949 23 RCINCGS 29 (107)
Q Consensus 23 ~C~~Cg~ 29 (107)
+|..|+.
T Consensus 7 ~C~~C~~ 13 (72)
T 1x4k_A 7 GCQECKK 13 (72)
T ss_dssp CBSSSCC
T ss_pred CCccCCC
Confidence 4666666
No 288
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.02 E-value=67 Score=18.01 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=7.6
Q ss_pred ccccccCCceecC
Q 033949 83 VSKCRFCDRLVEP 95 (107)
Q Consensus 83 ~~~C~~CG~~i~~ 95 (107)
-..|..|+..+..
T Consensus 41 CF~C~~C~~~L~~ 53 (79)
T 2cor_A 41 HFNCANCGKELTA 53 (79)
T ss_dssp TSBCSSSCCBCCT
T ss_pred CCEeCCCCCccCC
Confidence 3456666666554
No 289
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=32.73 E-value=16 Score=20.57 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=6.8
Q ss_pred ccccccCCce
Q 033949 83 VSKCRFCDRL 92 (107)
Q Consensus 83 ~~~C~~CG~~ 92 (107)
.++||.|++.
T Consensus 26 kY~CPrC~~r 35 (59)
T 1x4s_A 26 RYTCPRCNAP 35 (59)
T ss_dssp CEECTTTCCE
T ss_pred cccCcCCCCC
Confidence 4677777765
No 290
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.63 E-value=29 Score=18.52 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.0
Q ss_pred CCCCceeCCCCCCCC
Q 033949 52 AKEPALFCNNCNLLF 66 (107)
Q Consensus 52 ~~~~~~~C~~CG~~~ 66 (107)
++.+.+.|+.|--.-
T Consensus 7 ~~~gsW~C~~C~v~N 21 (47)
T 2ebr_A 7 GPEGSWDCELCLVQN 21 (47)
T ss_dssp SCCSSCCCSSSCCCC
T ss_pred CCCCeeECCeeecCC
Confidence 344556666665443
No 291
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.22 E-value=33 Score=18.32 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=10.2
Q ss_pred ccccCCceecCCCccCcCCCC
Q 033949 85 KCRFCDRLVEPDFSFCPYCGS 105 (107)
Q Consensus 85 ~C~~CG~~i~~~~~fCP~CG~ 105 (107)
.|..|=....+++..|.-|+.
T Consensus 13 ~C~~C~v~N~a~~~kC~aCet 33 (47)
T 2ebq_A 13 DCDTCLVQNKPEAIKCVACET 33 (47)
T ss_dssp ECSSSCCEECSSCSBCSSSCC
T ss_pred ECCeeeccCccCCceecCcCC
Confidence 344444444445555555543
No 292
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.98 E-value=35 Score=18.49 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=23.3
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..+.... ....+. ....-..|..|+..+..
T Consensus 4 ~~~~C~~C~~~I~~~~--~~a~~~~~H~~CF~C~~C~~~L~~ 43 (70)
T 2d8z_A 4 GSSGCVQCKKPITTGG--VTYREQPWHKECFVCTACRKQLSG 43 (70)
T ss_dssp CCCBCSSSCCBCCSSE--EESSSSEEETTTSBCSSSCCBCTT
T ss_pred CCCCCcccCCeeccce--EEECccccCCCCCccCCCCCcCCc
Confidence 4568999999875321 111111 12234679999998864
No 293
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=31.75 E-value=5.4 Score=26.20 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=7.8
Q ss_pred ccccCCceecC
Q 033949 85 KCRFCDRLVEP 95 (107)
Q Consensus 85 ~C~~CG~~i~~ 95 (107)
.||.|+..+..
T Consensus 55 ~CP~Cr~~~~~ 65 (170)
T 3hcs_A 55 KCPVDNEILLE 65 (170)
T ss_dssp BCTTTCCBCCG
T ss_pred CCCCCccCcch
Confidence 68888777654
No 294
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.10 E-value=20 Score=14.73 Aligned_cols=7 Identities=57% Similarity=1.549 Sum_probs=3.6
Q ss_pred ccccCCc
Q 033949 85 KCRFCDR 91 (107)
Q Consensus 85 ~C~~CG~ 91 (107)
.|+.||.
T Consensus 4 ~C~~C~~ 10 (29)
T 2m0e_A 4 KCPHCDK 10 (29)
T ss_dssp CCSSCCC
T ss_pred cCCCCCc
Confidence 4555554
No 295
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=31.07 E-value=30 Score=23.52 Aligned_cols=11 Identities=18% Similarity=-0.094 Sum_probs=6.3
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...||.|+..+
T Consensus 106 ~f~CPI~~elm 116 (179)
T 2f42_A 106 YLCGKISFELM 116 (179)
T ss_dssp GGBCTTTCSBC
T ss_pred hhcccCccccC
Confidence 45566666555
No 296
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.83 E-value=4 Score=22.29 Aligned_cols=21 Identities=29% Similarity=0.611 Sum_probs=9.4
Q ss_pred cccCCceecCCCccCcCCCCC
Q 033949 86 CRFCDRLVEPDFSFCPYCGSA 106 (107)
Q Consensus 86 C~~CG~~i~~~~~fCP~CG~~ 106 (107)
|..|-.........||.|..+
T Consensus 45 c~~Ci~~~~~~~~~CP~Cr~~ 65 (69)
T 2ea6_A 45 CSQCLRDSLKNANTCPTCRKK 65 (69)
T ss_dssp EHHHHHHHHHHCSSCTTTCCC
T ss_pred cHHHHHHHHHcCCCCCCCCCc
Confidence 333433333334456666554
No 297
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=30.83 E-value=30 Score=21.64 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=20.1
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceec
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVE 94 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~ 94 (107)
....|..|+..+.... .....+. ....-.+|..|+..+.
T Consensus 60 ~~~~C~~C~~~I~~~~-~v~a~~~~wH~~CF~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRF-LLYAMDSYWHSRCLKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSS-EEEETTEEEETTTSBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcE-EEEeCCcEEcccccCcCcCCCccc
Confidence 3567888887764211 0000000 1123456888888875
No 298
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=30.80 E-value=44 Score=20.51 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=6.4
Q ss_pred cEECCCCCC
Q 033949 21 AGRCINCGS 29 (107)
Q Consensus 21 ~~~C~~Cg~ 29 (107)
+.+||.||.
T Consensus 2 ~M~Cp~Cg~ 10 (133)
T 3o9x_A 2 HMKCPVCHQ 10 (133)
T ss_dssp CCBCTTTSS
T ss_pred CcCCCcCCC
Confidence 346888887
No 299
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=30.67 E-value=36 Score=20.42 Aligned_cols=11 Identities=9% Similarity=0.011 Sum_probs=6.1
Q ss_pred cccccCCceec
Q 033949 84 SKCRFCDRLVE 94 (107)
Q Consensus 84 ~~C~~CG~~i~ 94 (107)
..||-|+..+.
T Consensus 58 ~~cP~~~~~l~ 68 (98)
T 1wgm_A 58 QTDPFNRSPLT 68 (98)
T ss_dssp CBCTTTCSBCC
T ss_pred CCCCCCCCCCC
Confidence 35666665554
No 300
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=30.53 E-value=24 Score=22.00 Aligned_cols=19 Identities=26% Similarity=0.690 Sum_probs=14.1
Q ss_pred CcEECCCCCC--CcEEEEEee
Q 033949 20 GAGRCINCGS--TADLVEYEK 38 (107)
Q Consensus 20 ~~~~C~~Cg~--~~~~~~~~~ 38 (107)
...+||+||. ++..+++.+
T Consensus 51 mhakcprcgaegsvsivetkn 71 (131)
T 2x5c_A 51 MHAKCPRCGAEGSVSIVETKN 71 (131)
T ss_dssp CEEECTTTSCEEEEEEEECTT
T ss_pred eeccCCCCCCccceEEEEecC
Confidence 4568999999 777776544
No 301
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=30.06 E-value=3.4 Score=22.21 Aligned_cols=12 Identities=17% Similarity=0.670 Sum_probs=6.4
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.|.+.+..
T Consensus 45 ~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 45 NTCPTCRKKINH 56 (64)
T ss_dssp SBCTTTCCBCTT
T ss_pred CCCCCCCccCCc
Confidence 356666655543
No 302
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=29.73 E-value=23 Score=25.05 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=5.8
Q ss_pred ceeC--CCCCCCC
Q 033949 56 ALFC--NNCNLLF 66 (107)
Q Consensus 56 ~~~C--~~CG~~~ 66 (107)
...| +.||+..
T Consensus 141 ~f~C~~~~C~~~~ 153 (268)
T 2vl6_A 141 TYKHIHPDCMQEF 153 (268)
T ss_dssp EEEEECTTCCCEE
T ss_pred EEECCCCCCCCEE
Confidence 3456 6666544
No 303
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=29.32 E-value=31 Score=17.20 Aligned_cols=37 Identities=11% Similarity=0.288 Sum_probs=19.1
Q ss_pred eCCCCCCCCCCCCCCCCCC-CCCccCccccccCCceec
Q 033949 58 FCNNCNLLFPSSLPPPPPP-PPLVSDVSKCRFCDRLVE 94 (107)
Q Consensus 58 ~C~~CG~~~~~~~~~~~~~-~~~~~~~~~C~~CG~~i~ 94 (107)
.|+.||..+.......... .......+.|+.||....
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp BCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred cCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence 5889999885422100000 000113467888887654
No 304
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.05 E-value=40 Score=19.43 Aligned_cols=40 Identities=15% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecC
Q 033949 54 EPALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 54 ~~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
.....|..|+..+.. +.....+. ....-..|..|+..+..
T Consensus 23 ~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVIRG--PFLVALGKSWHPEEFNCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBCCS--CEEEETTEEECTTTCBCSSSCCBCSS
T ss_pred CCCCCCccCCCEecc--eEEEECCccccccCCccCCCCCCCCC
Confidence 367789999998732 11100000 12235679999988864
No 305
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.00 E-value=30 Score=19.75 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=5.4
Q ss_pred ceeCCCCCCCC
Q 033949 56 ALFCNNCNLLF 66 (107)
Q Consensus 56 ~~~C~~CG~~~ 66 (107)
...|..|+..+
T Consensus 15 ~~rC~~C~kkv 25 (64)
T 1wg2_A 15 NNRCFSCNKKV 25 (64)
T ss_dssp SCSCTTTCCCC
T ss_pred CCcChhhCCcc
Confidence 34455555544
No 306
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.89 E-value=38 Score=18.70 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=4.8
Q ss_pred ccccCCceec
Q 033949 85 KCRFCDRLVE 94 (107)
Q Consensus 85 ~C~~CG~~i~ 94 (107)
.|..|+..+.
T Consensus 41 ~C~~C~~~L~ 50 (77)
T 1g47_A 41 VCAQCFQQFP 50 (77)
T ss_dssp CCTTTCCCCG
T ss_pred eECCCCCCCC
Confidence 3555554443
No 307
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=28.35 E-value=47 Score=15.38 Aligned_cols=17 Identities=35% Similarity=0.512 Sum_probs=11.8
Q ss_pred EEEEcccccceeeecCC
Q 033949 3 FFFVGGVNQQVSRVLKS 19 (107)
Q Consensus 3 f~~ifG~~~~~k~~~~~ 19 (107)
|+=|||+.+...-+.+.
T Consensus 5 FyEIFGtG~EYrYile~ 21 (26)
T 2xpn_B 5 FFEIFGTGEEYRYVLES 21 (26)
T ss_pred EEEEecCCceEEEEeec
Confidence 44589999877666554
No 308
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=28.27 E-value=5 Score=22.10 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=7.0
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.|.+.+..
T Consensus 52 ~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 52 KKCPICRVDIEA 63 (69)
T ss_dssp SBCTTTCSBSCS
T ss_pred CCCcCcCccccC
Confidence 346666666544
No 309
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=28.24 E-value=17 Score=26.46 Aligned_cols=38 Identities=24% Similarity=0.578 Sum_probs=17.7
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..++.+.....+ .......|+.||..+.+
T Consensus 138 ~~~~C~~C~~~~~~~~~~~~i---~~~~~P~C~~Cgg~lrP 175 (285)
T 3glr_A 138 ASATCTVCQRPFPGEDIRADV---MADRVPRCPVCTGVVKP 175 (285)
T ss_dssp EEEEETTTCCEEEGGGGHHHH---HTTCCCBCTTTCCBEEE
T ss_pred CeEEECCCCCcCCHHHHHHHh---hcCCCCCCCCCCCccCC
Confidence 456677777665432100000 00013457777766654
No 310
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=28.22 E-value=82 Score=17.63 Aligned_cols=28 Identities=18% Similarity=0.557 Sum_probs=19.2
Q ss_pred CCcEECCCCCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCC
Q 033949 19 SGAGRCINCGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLF 66 (107)
Q Consensus 19 ~~~~~C~~Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~ 66 (107)
.....|+.|+... + ....+.|..|..-|
T Consensus 16 ~~~~~C~~C~~~~-------------------~-~~~mi~CD~C~~wf 43 (75)
T 2k16_A 16 NQIWICPGCNKPD-------------------D-GSPMIGCDDCDDWY 43 (75)
T ss_dssp CEEECBTTTTBCC-------------------S-SCCEEECSSSSSEE
T ss_pred CCCcCCCCCCCCC-------------------C-CCCEEEcCCCCccc
Confidence 3455699999842 1 23688999998765
No 311
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=28.07 E-value=40 Score=17.24 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=5.3
Q ss_pred CceeCCCCCCC
Q 033949 55 PALFCNNCNLL 65 (107)
Q Consensus 55 ~~~~C~~CG~~ 65 (107)
+.+.|..|+..
T Consensus 27 qg~~C~~C~~~ 37 (50)
T 1ptq_A 27 QGLKCEDCGMN 37 (50)
T ss_dssp CEEEETTTCCE
T ss_pred ccCEeCCCCCe
Confidence 44555555443
No 312
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=27.46 E-value=20 Score=21.02 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=7.4
Q ss_pred CCCceeCCCCCCC
Q 033949 53 KEPALFCNNCNLL 65 (107)
Q Consensus 53 ~~~~~~C~~CG~~ 65 (107)
.+....|.-|+..
T Consensus 14 ge~~Y~C~~C~~d 26 (75)
T 3ny3_A 14 GEPTYSCRDCAVD 26 (75)
T ss_dssp TCEEEEETTTBSS
T ss_pred CCEEEECccCCCC
Confidence 3346667766653
No 313
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=27.35 E-value=8.6 Score=23.86 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=7.4
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.|.+.+..
T Consensus 88 ~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 88 FSCPACRYDLGR 99 (124)
T ss_dssp CBCTTTCCBCCT
T ss_pred CCCCCCCccCCC
Confidence 367777766644
No 314
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=27.31 E-value=35 Score=16.98 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=19.6
Q ss_pred eeCCCCCCCCCCCCCCCCCCC-CCccCccccccCCceec
Q 033949 57 LFCNNCNLLFPSSLPPPPPPP-PLVSDVSKCRFCDRLVE 94 (107)
Q Consensus 57 ~~C~~CG~~~~~~~~~~~~~~-~~~~~~~~C~~CG~~i~ 94 (107)
..|+.||..+........... ......+.|+.||....
T Consensus 5 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 5 RECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred ccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhC
Confidence 469999998854221000000 00113467888887654
No 315
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.28 E-value=5.9 Score=24.73 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=9.2
Q ss_pred ceeCCCCCCCCC
Q 033949 56 ALFCNNCNLLFP 67 (107)
Q Consensus 56 ~~~C~~CG~~~~ 67 (107)
-..|..|+..+.
T Consensus 32 CF~C~~C~~~L~ 43 (122)
T 1m3v_A 32 CLKCSSCQAQLG 43 (122)
T ss_dssp HHCCSSSCCCTT
T ss_pred CCCcCCCCCccc
Confidence 456889998875
No 316
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.25 E-value=37 Score=18.21 Aligned_cols=10 Identities=20% Similarity=0.594 Sum_probs=4.9
Q ss_pred ccccCCceec
Q 033949 85 KCRFCDRLVE 94 (107)
Q Consensus 85 ~C~~CG~~i~ 94 (107)
.|..|+..+.
T Consensus 33 ~C~~C~~~L~ 42 (66)
T 1nyp_A 33 VCAKCEKPFL 42 (66)
T ss_dssp BCTTTCCBCS
T ss_pred EECCCCCCCC
Confidence 4555555443
No 317
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=27.20 E-value=24 Score=14.59 Aligned_cols=7 Identities=29% Similarity=1.454 Sum_probs=3.6
Q ss_pred ccccCCc
Q 033949 85 KCRFCDR 91 (107)
Q Consensus 85 ~C~~CG~ 91 (107)
.|+.||.
T Consensus 4 ~C~~C~k 10 (30)
T 1klr_A 4 QCQYCEF 10 (30)
T ss_dssp CCSSSSC
T ss_pred cCCCCCC
Confidence 4555554
No 318
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=26.91 E-value=9.2 Score=23.73 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=12.8
Q ss_pred CceeCCCCCCCCCCCC
Q 033949 55 PALFCNNCNLLFPSSL 70 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~ 70 (107)
+.+.|+.||..|++..
T Consensus 52 ~~LvC~~c~~~YPI~d 67 (97)
T 2k5r_A 52 EALITRDRKQVFRIED 67 (97)
T ss_dssp EEEECTTSCEEEEEET
T ss_pred CeEEcCCCCCCccccC
Confidence 5788999999987744
No 319
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=26.63 E-value=38 Score=20.72 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=21.7
Q ss_pred CccccccCCceecCCCccCcCCCCC
Q 033949 82 DVSKCRFCDRLVEPDFSFCPYCGSA 106 (107)
Q Consensus 82 ~~~~C~~CG~~i~~~~~fCP~CG~~ 106 (107)
..-.|+.|-.....++..|.-|+++
T Consensus 71 g~W~C~~C~~~N~~~~~~C~aC~tp 95 (98)
T 3gj7_B 71 GTWDCDTCLVQNKPEAVKCVACETP 95 (98)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCB
T ss_pred CcccCCcCcCCChhhcceecccCCC
Confidence 3467999999999999999999875
No 320
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=26.18 E-value=43 Score=16.91 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=19.4
Q ss_pred eeCCCCCCCCCCCCCCCCCC-CCCccCccccccCCceec
Q 033949 57 LFCNNCNLLFPSSLPPPPPP-PPLVSDVSKCRFCDRLVE 94 (107)
Q Consensus 57 ~~C~~CG~~~~~~~~~~~~~-~~~~~~~~~C~~CG~~i~ 94 (107)
..|+.||..+.......... .......+.|+.||....
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEES
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 36899998885422100000 000113467888887654
No 321
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.93 E-value=53 Score=18.83 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=22.8
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..+.. + .....+. ....-..|..|+..+..
T Consensus 24 ~~~~C~~C~~~I~~-~-~~~a~~~~~H~~CF~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-A-VVKARDKYRHPECFVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-C-CEESSSCEECTTTCCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-c-EEEECCceECccCCEecCCCCCCCC
Confidence 46679999988753 1 1111111 12234678999988765
No 322
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=25.88 E-value=5.9 Score=21.77 Aligned_cols=12 Identities=17% Similarity=0.670 Sum_probs=6.8
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.|.+.+..
T Consensus 52 ~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 52 NTCPTCRKKINH 63 (71)
T ss_dssp SBCTTTCCBCCC
T ss_pred CCCCCCCCccCh
Confidence 356666666543
No 323
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=25.45 E-value=22 Score=21.56 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=23.2
Q ss_pred CceeCCCCCCCCCCCCC---CCCCCC------C-------CccCccccccCCceec
Q 033949 55 PALFCNNCNLLFPSSLP---PPPPPP------P-------LVSDVSKCRFCDRLVE 94 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~---~~~~~~------~-------~~~~~~~C~~CG~~i~ 94 (107)
...+||.||+.++-.+. ...+.. + +++-..+||.||.+.-
T Consensus 7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFy 62 (95)
T 2k5c_A 7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFY 62 (95)
T ss_dssp -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEE
T ss_pred ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHh
Confidence 47899999998743111 111111 0 1224678999999863
No 324
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=25.44 E-value=37 Score=23.24 Aligned_cols=25 Identities=16% Similarity=0.406 Sum_probs=17.1
Q ss_pred eeeecCCC------CCceeCCCCCCCCCCCC
Q 033949 46 PVWKWPAK------EPALFCNNCNLLFPSSL 70 (107)
Q Consensus 46 P~~~~~~~------~~~~~C~~CG~~~~~~~ 70 (107)
|++|.+.+ .-.++||.|...|....
T Consensus 118 ~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~s 148 (182)
T 1qf8_A 118 PMLPIGLSDIPGEAMVKLYCPKCMDVYTPKS 148 (182)
T ss_dssp BCEEECSCSSTTSCBCEEECTTTCCEECCSS
T ss_pred cccCCccCCCCCCCceEEECCCccceeCCCc
Confidence 34666543 23688999999997644
No 325
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=25.39 E-value=47 Score=21.53 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=24.1
Q ss_pred CCcEECC--CCCCCcEEEEEeeEEEEEEEeeeecC
Q 033949 19 SGAGRCI--NCGSTADLVEYEKVLKAFFVPVWKWP 51 (107)
Q Consensus 19 ~~~~~C~--~Cg~~~~~~~~~~~f~lFFIP~~~~~ 51 (107)
...+.|- +||..|.....++-+.+ +|+++..
T Consensus 59 ~g~I~C~~~~Cg~~WG~~m~yk~~~~--LP~LkIk 91 (131)
T 4a2v_A 59 KSKMYCRNNNCQHDWGITVKYLTFDN--LPVIKIK 91 (131)
T ss_dssp EEEEEESCTTTCCEEEEEEEETTEEE--EEEECGG
T ss_pred CcEEEeCccccChhhhhhEeecCccc--CceEeEE
Confidence 3577899 99999998888887762 3887764
No 326
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=25.38 E-value=29 Score=14.08 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=6.7
Q ss_pred eCCCCCCCCC
Q 033949 58 FCNNCNLLFP 67 (107)
Q Consensus 58 ~C~~CG~~~~ 67 (107)
.|+.||..+.
T Consensus 3 ~C~~C~k~f~ 12 (27)
T 1znf_A 3 KCGLCERSFV 12 (27)
T ss_dssp BCSSSCCBCS
T ss_pred cCCCCCCcCC
Confidence 4777777664
No 327
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.21 E-value=13 Score=21.23 Aligned_cols=11 Identities=27% Similarity=1.126 Sum_probs=6.4
Q ss_pred cccccCCceec
Q 033949 84 SKCRFCDRLVE 94 (107)
Q Consensus 84 ~~C~~CG~~i~ 94 (107)
..||.|...+.
T Consensus 57 ~~CP~Cr~~~~ 67 (88)
T 2ct2_A 57 VRCPFCSKITR 67 (88)
T ss_dssp BCCTTTCCCBC
T ss_pred cCCCCCCCccc
Confidence 45666666554
No 328
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.20 E-value=29 Score=14.28 Aligned_cols=10 Identities=30% Similarity=0.873 Sum_probs=6.9
Q ss_pred eCCCCCCCCC
Q 033949 58 FCNNCNLLFP 67 (107)
Q Consensus 58 ~C~~CG~~~~ 67 (107)
.|+.||..+.
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 1ard_A 4 VCEVCTRAFA 13 (29)
T ss_dssp BCTTTCCBCS
T ss_pred ECCCCCcccC
Confidence 5777777764
No 329
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=24.76 E-value=48 Score=20.90 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=19.7
Q ss_pred cEECCCCCC-CcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCC
Q 033949 21 AGRCINCGS-TADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLF 66 (107)
Q Consensus 21 ~~~C~~Cg~-~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~ 66 (107)
.+.||+|++ .. +|-.+-.....|..|+...
T Consensus 14 ~~~c~~c~~~~~----------------~~~~r~~~~~~~~~~~~~~ 44 (155)
T 2ppt_A 14 RLTCLACGQANK----------------VPSDRLAAGPKCGICGAGL 44 (155)
T ss_dssp EEECTTTCCEEE----------------EEGGGTTSCCBCTTTCCBS
T ss_pred eEECcccccccc----------------CCcccccCCCCCCcCCccc
Confidence 478999999 22 2333333466788888765
No 330
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=24.68 E-value=23 Score=19.49 Aligned_cols=10 Identities=0% Similarity=-0.154 Sum_probs=5.9
Q ss_pred ceeCCCCCCC
Q 033949 56 ALFCNNCNLL 65 (107)
Q Consensus 56 ~~~C~~CG~~ 65 (107)
.+.|+.|+..
T Consensus 11 ~L~ct~c~~~ 20 (55)
T 2zjr_1 11 KMESSAGTGF 20 (55)
T ss_pred EEEEcccCCe
Confidence 4566666653
No 331
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=24.66 E-value=31 Score=24.37 Aligned_cols=16 Identities=19% Similarity=0.650 Sum_probs=13.2
Q ss_pred ceeCCCCCCCCCCCCC
Q 033949 56 ALFCNNCNLLFPSSLP 71 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~ 71 (107)
.++||.|...|.....
T Consensus 134 KlyCP~C~DvY~P~s~ 149 (215)
T 4dgl_A 134 KLYCPKCMDVYTPKSS 149 (215)
T ss_dssp EEECTTTCCEECCSST
T ss_pred eEeCCCcccccCCCcc
Confidence 7899999999977543
No 332
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=24.45 E-value=20 Score=26.52 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=5.1
Q ss_pred eeCCCCCCCC
Q 033949 57 LFCNNCNLLF 66 (107)
Q Consensus 57 ~~C~~CG~~~ 66 (107)
..|+.||..+
T Consensus 186 P~C~~Cgg~l 195 (323)
T 1j8f_A 186 PKCEDCQSLV 195 (323)
T ss_dssp CBCTTTCCBE
T ss_pred CCCcCCCCcc
Confidence 3455555544
No 333
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=24.24 E-value=22 Score=19.34 Aligned_cols=8 Identities=0% Similarity=-0.093 Sum_probs=4.2
Q ss_pred eeCCCCCC
Q 033949 57 LFCNNCNL 64 (107)
Q Consensus 57 ~~C~~CG~ 64 (107)
+.|..|+.
T Consensus 12 L~ct~c~~ 19 (52)
T 2ftc_P 12 MVSEAGTG 19 (52)
T ss_pred EEEecCCC
Confidence 45555554
No 334
>1zt2_A DNA primase small subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: d.264.1.1
Probab=23.95 E-value=22 Score=26.65 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=16.7
Q ss_pred CccccccCCceecCCCccCcCCCC
Q 033949 82 DVSKCRFCDRLVEPDFSFCPYCGS 105 (107)
Q Consensus 82 ~~~~C~~CG~~i~~~~~fCP~CG~ 105 (107)
..++|++||.... . ..|+.|+.
T Consensus 112 ~~r~C~~~~~~~~-~-~~C~kC~~ 133 (330)
T 1zt2_A 112 SIRFCPVCGNAVV-S-EKCERDNV 133 (330)
T ss_dssp EEEECTTTCCBCS-S-SEETTTTE
T ss_pred ccccccccccccc-c-cccccccc
Confidence 3577888887766 3 89999973
No 335
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.54 E-value=43 Score=18.77 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=22.7
Q ss_pred CceeCCCCCCCCCCCCCCCCCCCC-CccCccccccCCceecC
Q 033949 55 PALFCNNCNLLFPSSLPPPPPPPP-LVSDVSKCRFCDRLVEP 95 (107)
Q Consensus 55 ~~~~C~~CG~~~~~~~~~~~~~~~-~~~~~~~C~~CG~~i~~ 95 (107)
....|..|+..+... .....+. ....-..|..|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV--FVKLRDRHRHPECYVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCSS--CEECSSCEECTTTTSCSSSCCCHHH
T ss_pred CCCccccCCCCccCc--EEEECcceeCcCcCeeCCCCCCCCC
Confidence 467899999987532 1111111 12234678999888753
No 336
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=23.52 E-value=53 Score=19.39 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=17.9
Q ss_pred ceeCCCCCCCCCCCCCCCCCCCCCccCccccccCCce
Q 033949 56 ALFCNNCNLLFPSSLPPPPPPPPLVSDVSKCRFCDRL 92 (107)
Q Consensus 56 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~ 92 (107)
.+.||.|...-++..+..+-. .....|-+||..
T Consensus 17 tWVCpICsfsN~v~s~fdp~~----~~lPpC~aCGIk 49 (76)
T 2j9u_B 17 TWVCPICMVSNETQGEFTKDT----LPTPICINCGVP 49 (76)
T ss_dssp EEECTTTCCEEEESSCCCTTC----SSCCBCTTTCCB
T ss_pred ceECccccccCcCccccCCCC----CCCCcccccCcc
Confidence 567888876655543321100 123568888865
No 337
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=23.47 E-value=32 Score=26.10 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=21.0
Q ss_pred CceeCCC--CCCCCCCCCCCCCCCCCCccCccccccCCceec
Q 033949 55 PALFCNN--CNLLFPSSLPPPPPPPPLVSDVSKCRFCDRLVE 94 (107)
Q Consensus 55 ~~~~C~~--CG~~~~~~~~~~~~~~~~~~~~~~C~~CG~~i~ 94 (107)
.+..||. |++....... ..+.|+.||...+
T Consensus 307 ~Y~aC~~~~C~kkv~~~~~----------g~~~C~~C~~~~~ 338 (444)
T 4gop_C 307 YYTACASEGCNKKVNLDHE----------NNWRCEKCDRSYA 338 (444)
T ss_dssp EEEECCSTTCCCBEEECTT----------SCEEETTTTEEES
T ss_pred EEccCCcccCCCccccCCC----------ccEECCCCCCcCc
Confidence 5889999 9998743211 2478999997753
No 338
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=23.42 E-value=56 Score=17.53 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=20.1
Q ss_pred eeCCCCCCCCCCCCCCCCCCC-CCccCccccccCCceec
Q 033949 57 LFCNNCNLLFPSSLPPPPPPP-PLVSDVSKCRFCDRLVE 94 (107)
Q Consensus 57 ~~C~~CG~~~~~~~~~~~~~~-~~~~~~~~C~~CG~~i~ 94 (107)
-.|+.||..+........... ......+.|+.||....
T Consensus 5 y~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp EECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred ccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 478999988854221000000 00123578999988654
No 339
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=23.19 E-value=52 Score=19.43 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=4.3
Q ss_pred CcEECCCCCC
Q 033949 20 GAGRCINCGS 29 (107)
Q Consensus 20 ~~~~C~~Cg~ 29 (107)
+.+.|-+||.
T Consensus 4 k~~~C~~Cg~ 13 (83)
T 3nyb_B 4 KKVQCTLCKS 13 (83)
T ss_dssp ---CCSSSCC
T ss_pred ccCCCCCCCC
Confidence 3445666666
No 340
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.18 E-value=52 Score=18.27 Aligned_cols=24 Identities=21% Similarity=0.352 Sum_probs=17.9
Q ss_pred ccccccCCceecCCCccCcCCCCC
Q 033949 83 VSKCRFCDRLVEPDFSFCPYCGSA 106 (107)
Q Consensus 83 ~~~C~~CG~~i~~~~~fCP~CG~~ 106 (107)
.-.|..|=...+++...|.-|+++
T Consensus 31 sWeC~~C~V~N~a~~~kC~ACetp 54 (57)
T 2ebv_A 31 SWECSVCCVSNNAEDNKCVSCMSE 54 (57)
T ss_dssp SCCCSSSCCCCCSSCSBCSSSCCB
T ss_pred eeeCCeeEccCccCCceeeEcCCc
Confidence 456888877777788888888764
No 341
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=23.13 E-value=13 Score=24.26 Aligned_cols=12 Identities=17% Similarity=0.534 Sum_probs=7.4
Q ss_pred ccccCCceecCC
Q 033949 85 KCRFCDRLVEPD 96 (107)
Q Consensus 85 ~C~~CG~~i~~~ 96 (107)
.||.|.+.+...
T Consensus 115 ~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 115 SCPACRHDLGQN 126 (150)
T ss_dssp BCTTTCCBCCTT
T ss_pred cCCCCCccCCCC
Confidence 577776666543
No 342
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=23.13 E-value=28 Score=19.63 Aligned_cols=13 Identities=23% Similarity=0.559 Sum_probs=7.8
Q ss_pred ceeCCCCCCCCCC
Q 033949 56 ALFCNNCNLLFPS 68 (107)
Q Consensus 56 ~~~C~~CG~~~~~ 68 (107)
-..|..|+..+..
T Consensus 34 CF~C~~C~~~L~~ 46 (81)
T 1a7i_A 34 CFLCMVCRKNLDS 46 (81)
T ss_dssp SEECSSSCCEECS
T ss_pred cCccCCCCCCCCC
Confidence 4556777766543
No 343
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.94 E-value=49 Score=19.42 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=5.6
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
.+|..|+..+..
T Consensus 26 ~RC~~C~kkvgL 37 (74)
T 1wfp_A 26 TRCLSCNKKVGV 37 (74)
T ss_dssp CBCSSSCCBCTT
T ss_pred ccchhhcCcccc
Confidence 445555544443
No 344
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=22.91 E-value=26 Score=21.74 Aligned_cols=9 Identities=22% Similarity=1.121 Sum_probs=4.6
Q ss_pred cccccCCce
Q 033949 84 SKCRFCDRL 92 (107)
Q Consensus 84 ~~C~~CG~~ 92 (107)
..|+.||..
T Consensus 36 ~~C~yCg~~ 44 (112)
T 2qgp_A 36 GICHYCGEI 44 (112)
T ss_dssp TBCTTTCCB
T ss_pred CcCCCCCCc
Confidence 345555543
No 345
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.58 E-value=18 Score=14.87 Aligned_cols=6 Identities=33% Similarity=1.032 Sum_probs=3.0
Q ss_pred ccccCC
Q 033949 85 KCRFCD 90 (107)
Q Consensus 85 ~C~~CG 90 (107)
.|+.||
T Consensus 4 ~C~~C~ 9 (26)
T 2lvu_A 4 VCERCG 9 (26)
Confidence 455554
No 346
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=22.78 E-value=8.8 Score=24.06 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=5.6
Q ss_pred cccccCCcee
Q 033949 84 SKCRFCDRLV 93 (107)
Q Consensus 84 ~~C~~CG~~i 93 (107)
+.||.|.+++
T Consensus 38 k~Cp~C~~~V 47 (101)
T 3vk6_A 38 KMCPGCSDPV 47 (101)
T ss_dssp CBCTTTCCBC
T ss_pred CCCcCcCCee
Confidence 4566665554
No 347
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.70 E-value=34 Score=14.20 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=7.2
Q ss_pred eCCCCCCCCC
Q 033949 58 FCNNCNLLFP 67 (107)
Q Consensus 58 ~C~~CG~~~~ 67 (107)
.|+.||..+.
T Consensus 4 ~C~~C~k~f~ 13 (30)
T 1paa_A 4 ACGLCNRAFT 13 (30)
T ss_dssp BCTTTCCBCS
T ss_pred CCcccCcccC
Confidence 5778887764
No 348
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=22.59 E-value=42 Score=21.39 Aligned_cols=13 Identities=0% Similarity=-0.284 Sum_probs=8.2
Q ss_pred ccccccCCceecC
Q 033949 83 VSKCRFCDRLVEP 95 (107)
Q Consensus 83 ~~~C~~CG~~i~~ 95 (107)
...|..||.++.+
T Consensus 126 ~~~~~~~g~~~~~ 138 (146)
T 2f2e_A 126 LQVRAGDGSPLAA 138 (146)
T ss_dssp CCCBCTTSCBCCG
T ss_pred eEEECCCcCCCCH
Confidence 3567777776654
No 349
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=22.24 E-value=21 Score=20.78 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=7.2
Q ss_pred CceeCCCCCCCC
Q 033949 55 PALFCNNCNLLF 66 (107)
Q Consensus 55 ~~~~C~~CG~~~ 66 (107)
....|.+||...
T Consensus 7 ~~~~C~nC~tt~ 18 (71)
T 2kae_A 7 KSFQCSNCSVTE 18 (71)
T ss_dssp -CCCCSSSCCSC
T ss_pred CCCcCCccCCCC
Confidence 355677777763
No 350
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=21.95 E-value=31 Score=22.33 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=6.8
Q ss_pred CceeCCCCCCCC
Q 033949 55 PALFCNNCNLLF 66 (107)
Q Consensus 55 ~~~~C~~CG~~~ 66 (107)
..+.|+.||...
T Consensus 7 ~~~~Ct~Cg~~~ 18 (129)
T 3ql9_A 7 GIVSCTACGQQV 18 (129)
T ss_dssp CSCBCTTTCCBC
T ss_pred CceEeccCCCCC
Confidence 445566666654
No 351
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=21.83 E-value=48 Score=21.37 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=7.4
Q ss_pred ccccCCceec
Q 033949 85 KCRFCDRLVE 94 (107)
Q Consensus 85 ~C~~CG~~i~ 94 (107)
.|..||..+.
T Consensus 82 VC~~C~~~~~ 91 (134)
T 1zbd_B 82 VCTKCGVETS 91 (134)
T ss_dssp EETTSEEECC
T ss_pred cccccCCccC
Confidence 5888888763
No 352
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=21.78 E-value=60 Score=14.96 Aligned_cols=9 Identities=22% Similarity=0.712 Sum_probs=5.3
Q ss_pred cccccCCce
Q 033949 84 SKCRFCDRL 92 (107)
Q Consensus 84 ~~C~~CG~~ 92 (107)
..|-|||.+
T Consensus 7 ~~C~nCgk~ 15 (29)
T 1nc8_A 7 IRCWNCGKE 15 (29)
T ss_dssp CBCTTTSCB
T ss_pred CEEEECCcc
Confidence 346666665
No 353
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.77 E-value=47 Score=13.47 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=4.0
Q ss_pred eCCCCCCCC
Q 033949 58 FCNNCNLLF 66 (107)
Q Consensus 58 ~C~~CG~~~ 66 (107)
.|+.||..+
T Consensus 5 ~C~~C~k~f 13 (27)
T 2kvh_A 5 SCSLCPQRS 13 (27)
T ss_dssp ECSSSSCEE
T ss_pred cCCCcChhh
Confidence 344444443
No 354
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.66 E-value=51 Score=18.79 Aligned_cols=12 Identities=17% Similarity=0.276 Sum_probs=6.5
Q ss_pred ceeCCCCCCCCC
Q 033949 56 ALFCNNCNLLFP 67 (107)
Q Consensus 56 ~~~C~~CG~~~~ 67 (107)
...|..|+....
T Consensus 15 ~~rC~~C~kkvg 26 (64)
T 1wfh_A 15 PNRCTVCRKRVG 26 (64)
T ss_dssp CCCCTTTCCCCC
T ss_pred CCcChhhCCccC
Confidence 445666665543
No 355
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=21.62 E-value=47 Score=19.02 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=5.6
Q ss_pred cccccCCceec
Q 033949 84 SKCRFCDRLVE 94 (107)
Q Consensus 84 ~~C~~CG~~i~ 94 (107)
..||.|.+.+.
T Consensus 51 ~~CP~CR~~~~ 61 (78)
T 1e4u_A 51 GLCPACRKPYP 61 (78)
T ss_dssp SBCTTTCCBCS
T ss_pred CCCCCCCCccC
Confidence 34555555543
No 356
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=21.52 E-value=11 Score=23.02 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=8.4
Q ss_pred cccccCCceecC
Q 033949 84 SKCRFCDRLVEP 95 (107)
Q Consensus 84 ~~C~~CG~~i~~ 95 (107)
..||.|.+.+..
T Consensus 59 ~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 59 SYCPSCRYPCFP 70 (116)
T ss_dssp SBCTTTCCBCCG
T ss_pred CcCCCCCCCCCH
Confidence 468888877654
No 357
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=21.25 E-value=21 Score=19.65 Aligned_cols=8 Identities=38% Similarity=0.962 Sum_probs=4.2
Q ss_pred eeCCCCCC
Q 033949 57 LFCNNCNL 64 (107)
Q Consensus 57 ~~C~~CG~ 64 (107)
+.|+.|+.
T Consensus 11 L~ct~c~~ 18 (54)
T 3v2d_6 11 LECTECKR 18 (54)
T ss_dssp EEETTTCC
T ss_pred EEEeCCCC
Confidence 44555554
No 358
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=21.14 E-value=53 Score=19.01 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=6.6
Q ss_pred ceeCCCCCCCCC
Q 033949 56 ALFCNNCNLLFP 67 (107)
Q Consensus 56 ~~~C~~CG~~~~ 67 (107)
...|+.|-..+.
T Consensus 40 ~~~C~IC~~~~~ 51 (91)
T 2l0b_A 40 EMCCPICCSEYV 51 (91)
T ss_dssp CSEETTTTEECC
T ss_pred CCCCcccChhhc
Confidence 345666665553
No 359
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=21.02 E-value=34 Score=15.27 Aligned_cols=9 Identities=44% Similarity=0.885 Sum_probs=5.4
Q ss_pred ccccccCCc
Q 033949 83 VSKCRFCDR 91 (107)
Q Consensus 83 ~~~C~~CG~ 91 (107)
.+.|+.||.
T Consensus 11 ~~~C~~C~k 19 (37)
T 1p7a_A 11 PFQCPDCDR 19 (37)
T ss_dssp SBCCTTTCC
T ss_pred CccCCCCCc
Confidence 356766664
No 360
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.92 E-value=52 Score=13.38 Aligned_cols=9 Identities=33% Similarity=0.814 Sum_probs=4.2
Q ss_pred eCCCCCCCC
Q 033949 58 FCNNCNLLF 66 (107)
Q Consensus 58 ~C~~CG~~~ 66 (107)
.|+.||..+
T Consensus 5 ~C~~C~k~f 13 (28)
T 2kvf_A 5 SCSVCGKRF 13 (28)
T ss_dssp ECSSSCCEE
T ss_pred cCCCCCccc
Confidence 344455443
No 361
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.83 E-value=53 Score=13.34 Aligned_cols=9 Identities=33% Similarity=0.899 Sum_probs=4.4
Q ss_pred eCCCCCCCC
Q 033949 58 FCNNCNLLF 66 (107)
Q Consensus 58 ~C~~CG~~~ 66 (107)
.|+.||..+
T Consensus 5 ~C~~C~~~f 13 (30)
T 2m0d_A 5 QCDYCGRSF 13 (30)
T ss_dssp ECTTTCCEE
T ss_pred cCCCCCccc
Confidence 355555544
No 362
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=20.79 E-value=43 Score=18.55 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=23.9
Q ss_pred CCcEECCC--CCCCcEEEEEeeEEEEEEEeeeecCCCCCceeCCCCCCCCCCCC
Q 033949 19 SGAGRCIN--CGSTADLVEYEKVLKAFFVPVWKWPAKEPALFCNNCNLLFPSSL 70 (107)
Q Consensus 19 ~~~~~C~~--Cg~~~~~~~~~~~f~lFFIP~~~~~~~~~~~~C~~CG~~~~~~~ 70 (107)
..-+.|.+ |++-.. |...+...+....|+.|+..-+...
T Consensus 7 ~~pvRC~r~~CraylN-------------P~~~~~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 7 GEPVLCSRTTCRAVLN-------------PLCQVDYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp CCCCBCSCTTTCCBCC-------------TTSEEEGGGTEEECSSSCCEEECCS
T ss_pred CCCcccCCCCCCeEEC-------------CceEEECCCCEEEcccCCCcCCCCH
Confidence 34567887 888110 3344544445788999988765543
No 363
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=26.03 E-value=21 Score=14.94 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=4.4
Q ss_pred cccccCCc
Q 033949 84 SKCRFCDR 91 (107)
Q Consensus 84 ~~C~~CG~ 91 (107)
+.|+.||.
T Consensus 4 ~~C~~C~k 11 (30)
T 2lvr_A 4 YVCIHCQR 11 (30)
Confidence 34666654
No 364
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.56 E-value=68 Score=15.41 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=8.8
Q ss_pred ceeCCCCCCCCCC
Q 033949 56 ALFCNNCNLLFPS 68 (107)
Q Consensus 56 ~~~C~~CG~~~~~ 68 (107)
...|+.||..+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (48)
T 2epr_A 12 QVACEICGKIFRD 24 (48)
T ss_dssp SEEETTTTEEESS
T ss_pred CeeCCCCCcccCC
Confidence 4568888877643
No 365
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=20.22 E-value=70 Score=17.49 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=6.2
Q ss_pred CceeCCCCCCCC
Q 033949 55 PALFCNNCNLLF 66 (107)
Q Consensus 55 ~~~~C~~CG~~~ 66 (107)
+.+.|..|+...
T Consensus 39 qg~~C~~C~~~~ 50 (65)
T 2enz_A 39 QGLKCDACGMNV 50 (65)
T ss_dssp CSEEESSSCCEE
T ss_pred cccccCCCCCcc
Confidence 455555555443
Done!