BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033950
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FDX9|GG1_ARATH Guanine nucleotide-binding protein subunit gamma 1 OS=Arabidopsis
thaliana GN=GG1 PE=1 SV=1
Length = 98
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 63/80 (78%)
Query: 28 GKHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNSPINP 87
GKHRILAEL RVEQE FLE+EL+E++ T+ VST+C+ELL +E PDPLL +TN P+N
Sbjct: 19 GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLPLTNGPLNL 78
Query: 88 IWDRWFEGPQDARGCRCMIL 107
WDRWFEGP GCRC+IL
Sbjct: 79 GWDRWFEGPNGGEGCRCLIL 98
>sp|Q93V47|GG2_ARATH Guanine nucleotide-binding protein subunit gamma 2 OS=Arabidopsis
thaliana GN=GG2 PE=1 SV=1
Length = 100
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 66/88 (75%)
Query: 20 AGGGTDTTGKHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLS 79
+G DT GKHRI AELKR+EQE+RFLEEELE+L+K +N S C E L ++++PDPLL
Sbjct: 13 SGRVVDTRGKHRIQAELKRLEQEARFLEEELEQLEKMDNASASCKEFLDSVDSKPDPLLP 72
Query: 80 VTNSPINPIWDRWFEGPQDARGCRCMIL 107
T P+N WD+WFEGP++A+ C C IL
Sbjct: 73 ETTGPVNATWDQWFEGPKEAKRCGCSIL 100
>sp|P15508|SPTB1_MOUSE Spectrin beta chain, erythrocytic OS=Mus musculus GN=Sptb PE=1 SV=4
Length = 2128
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 23 GTDTTGKHRILAELKRVEQESRFLEEELEEL 53
G D T +R+LA+LKRVE++ +EELEEL
Sbjct: 1400 GKDLTTVNRMLAKLKRVEEQVNLRKEELEEL 1430
>sp|Q6AWT8|GG3_ARATH Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis
thaliana GN=GG3 PE=2 SV=1
Length = 251
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 25 DTTGKHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLL 78
D GK R A ++ +E+E FLE E++ ++ + S E+ F+ A DPL+
Sbjct: 43 DLYGKRREAARVQMLEREIGFLEGEIKFIEGVQPASRCIKEVSDFVVANSDPLI 96
>sp|Q5VX52|SPAT1_HUMAN Spermatogenesis-associated protein 1 OS=Homo sapiens GN=SPATA1 PE=2
SV=3
Length = 437
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 27 TGKHRILAELKRVEQESRFLEEELEELDKT 56
T + +I+ ++K+V++E R+LE EEL KT
Sbjct: 272 TEREKIIKQMKQVKEERRYLERNREELVKT 301
>sp|Q3UZ18|NARG2_MOUSE NMDA receptor-regulated protein 2 OS=Mus musculus GN=Narg2 PE=1
SV=2
Length = 988
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 2 DGETASLGDEQMAGSRAAAGGGTDTTGKHRILAELKRVEQESRFLEEEL----EELDKTE 57
DG+TA LG + ++A+AG TT V +ES L++ + ++ D
Sbjct: 604 DGKTADLGSRPNSSAQASAGNQATTT-----------VSEESCVLKKPIKRVYKKFDPVG 652
Query: 58 NVSTICDELLKFMEARPDPLLSVTNS 83
+ + DELLK + +R P L +TNS
Sbjct: 653 EILKMQDELLKPV-SRKVPELPLTNS 677
>sp|O43182|RHG06_HUMAN Rho GTPase-activating protein 6 OS=Homo sapiens GN=ARHGAP6 PE=1
SV=3
Length = 974
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 23 GTDTTGKHRILAELKRV----EQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLL 78
G T G R+ + KRV E+ R ++ LEE +V+ + E L+ M PDPLL
Sbjct: 425 GLQTVGIFRVGSSKKRVRQLREEFDRGIDVSLEEEHSVHDVAALLKEFLRDM---PDPLL 481
Query: 79 S 79
+
Sbjct: 482 T 482
>sp|P11277|SPTB1_HUMAN Spectrin beta chain, erythrocytic OS=Homo sapiens GN=SPTB PE=1 SV=5
Length = 2137
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 23 GTDTTGKHRILAELKRVEQESRFLEEELEEL 53
G D T +R+LA+LKRVE + +EEL EL
Sbjct: 1408 GKDLTSVNRMLAKLKRVEDQVNVRKEELGEL 1438
>sp|Q12242|RUP1_YEAST UBA domain-containing protein RUP1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RUP1 PE=1 SV=1
Length = 671
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 32 ILAELKRVEQESRFLEEELEELD--KTENVSTICDELLKFMEARPD 75
I+++ K+ SR L +E+ EL + +N+STI + L +++ PD
Sbjct: 430 IISKRKQARTRSRCLLQEINELKSYQGKNISTILESTLAYLQTIPD 475
>sp|Q0P3M4|RPOC2_OSTTA DNA-directed RNA polymerase subunit beta'' OS=Ostreococcus tauri
GN=rpoC2 PE=3 SV=1
Length = 1011
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 26 TTGKHRILAELKRVEQESRFLEEELEELDKTENV 59
T G+H+ LAEL R+E + F + E+ TENV
Sbjct: 404 TVGEHQSLAELSRIENKQNFQQFEV----GTENV 433
>sp|Q21624|CORO_CAEEL Coronin-like protein cor-1 OS=Caenorhabditis elegans GN=cor-1 PE=3
SV=2
Length = 607
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 15 GSRAAAGGGTDTTGKHRILAELKRVEQ-ESRFLEEE 49
+R GGG T G+ R AEL+R+++ +SR +E+
Sbjct: 500 AARDEPGGGAQTAGQRRAAAELERIKRDQSRTADED 535
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,724,759
Number of Sequences: 539616
Number of extensions: 1636351
Number of successful extensions: 6004
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5975
Number of HSP's gapped (non-prelim): 55
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)