Query 033950
Match_columns 107
No_of_seqs 54 out of 56
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 08:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00631 G-gamma: GGL domain; 99.8 2.6E-19 5.5E-24 116.2 1.9 68 33-107 1-68 (68)
2 cd00068 GGL G protein gamma su 97.9 1.7E-05 3.7E-10 50.6 4.2 51 37-89 2-54 (57)
3 smart00224 GGL G protein gamma 97.4 0.00037 8.1E-09 45.2 4.4 51 37-89 2-54 (63)
4 KOG4119 G protein gamma subuni 95.9 0.022 4.8E-07 38.8 4.9 52 35-88 8-61 (71)
5 PRK14011 prefoldin subunit alp 95.1 0.039 8.4E-07 41.2 4.4 54 31-84 7-60 (144)
6 PRK01203 prefoldin subunit alp 92.8 0.2 4.2E-06 37.3 4.2 54 31-84 4-59 (130)
7 TIGR00293 prefoldin, archaeal 92.6 0.24 5.2E-06 34.3 4.2 53 32-84 4-58 (126)
8 COG1730 GIM5 Predicted prefold 90.7 0.53 1.2E-05 35.4 4.6 55 30-84 9-66 (145)
9 PRK03947 prefoldin subunit alp 90.5 0.64 1.4E-05 32.9 4.6 54 30-83 9-65 (140)
10 PF12325 TMF_TATA_bd: TATA ele 88.8 0.73 1.6E-05 33.5 4.0 41 19-59 8-48 (120)
11 PF13863 DUF4200: Domain of un 84.2 3.2 7E-05 28.4 5.1 48 29-76 76-123 (126)
12 cd00584 Prefoldin_alpha Prefol 83.7 2.7 5.8E-05 29.2 4.5 53 31-83 3-58 (129)
13 PF06305 DUF1049: Protein of u 83.3 2.2 4.7E-05 26.5 3.6 25 29-53 43-67 (68)
14 PF10458 Val_tRNA-synt_C: Valy 78.7 3.5 7.6E-05 26.4 3.4 24 32-55 2-25 (66)
15 PF07334 IFP_35_N: Interferon- 76.3 4.8 0.0001 27.8 3.8 25 30-54 3-27 (76)
16 PF07716 bZIP_2: Basic region 74.4 7.6 0.00017 23.8 4.0 27 28-54 19-45 (54)
17 PF03962 Mnd1: Mnd1 family; I 70.6 9 0.00019 29.3 4.4 38 24-61 100-137 (188)
18 PF07716 bZIP_2: Basic region 70.0 9.4 0.0002 23.4 3.7 24 31-54 29-52 (54)
19 PF04977 DivIC: Septum formati 69.6 9.5 0.00021 23.8 3.7 21 33-53 30-50 (80)
20 PF04977 DivIC: Septum formati 69.3 9.2 0.0002 23.8 3.6 28 28-55 18-45 (80)
21 PRK13922 rod shape-determining 68.8 8.1 0.00018 30.0 3.9 55 25-79 67-121 (276)
22 PF02185 HR1: Hr1 repeat; Int 64.9 14 0.00031 23.5 3.9 32 29-60 35-66 (70)
23 cd00890 Prefoldin Prefoldin is 64.0 21 0.00045 24.1 4.8 45 32-76 4-48 (129)
24 PF07106 TBPIP: Tat binding pr 63.0 26 0.00056 25.6 5.4 33 29-61 81-113 (169)
25 KOG3048 Molecular chaperone Pr 62.3 16 0.00035 28.3 4.3 54 29-82 15-71 (153)
26 PF00170 bZIP_1: bZIP transcri 61.6 20 0.00043 22.4 4.0 26 29-54 21-46 (64)
27 PF05010 TACC: Transforming ac 61.2 17 0.00037 28.7 4.4 41 31-71 165-206 (207)
28 PF08286 Spc24: Spc24 subunit 60.9 2.9 6.2E-05 29.4 0.1 25 35-59 21-45 (118)
29 PF10737 GerPC: Spore germinat 60.6 7.1 0.00015 30.4 2.2 22 36-57 1-22 (176)
30 PF14282 FlxA: FlxA-like prote 60.6 11 0.00025 26.3 3.0 23 33-55 18-40 (106)
31 PF08286 Spc24: Spc24 subunit 60.2 2.9 6.3E-05 29.4 0.0 27 29-55 8-34 (118)
32 PF04799 Fzo_mitofusin: fzo-li 60.0 12 0.00026 29.2 3.3 35 37-71 123-157 (171)
33 KOG2911 Uncharacterized conser 59.4 12 0.00026 33.1 3.6 37 27-65 233-269 (439)
34 TIGR02209 ftsL_broad cell divi 59.2 20 0.00044 23.0 3.9 23 31-53 28-50 (85)
35 PRK14127 cell division protein 58.4 16 0.00035 26.4 3.6 27 31-57 41-67 (109)
36 PF02996 Prefoldin: Prefoldin 57.9 4.1 9E-05 27.5 0.4 43 34-83 3-48 (120)
37 PF11932 DUF3450: Protein of u 57.8 29 0.00062 26.9 5.1 50 30-80 73-127 (251)
38 PF03285 Paralemmin: Paralemmi 57.3 13 0.00029 30.8 3.4 27 33-59 9-35 (278)
39 PF04102 SlyX: SlyX; InterPro 56.5 13 0.00029 24.1 2.7 24 31-54 29-52 (69)
40 PF14916 CCDC92: Coiled-coil d 56.0 13 0.00027 24.7 2.5 34 33-66 2-40 (60)
41 PF04508 Pox_A_type_inc: Viral 56.0 18 0.0004 20.0 2.7 18 35-52 2-19 (23)
42 PF14389 Lzipper-MIP1: Leucine 55.2 20 0.00044 24.4 3.5 26 29-54 56-81 (88)
43 PLN03128 DNA topoisomerase 2; 54.2 24 0.00052 34.2 5.0 39 34-72 1095-1133(1135)
44 cd04388 RhoGAP_p85 RhoGAP_p85: 53.8 9.6 0.00021 29.6 1.9 75 5-81 1-88 (200)
45 KOG0728 26S proteasome regulat 53.7 18 0.00039 31.3 3.7 28 28-55 39-66 (404)
46 COG5509 Uncharacterized small 53.0 18 0.00039 24.6 2.9 21 34-54 25-45 (65)
47 PRK00846 hypothetical protein; 52.9 26 0.00056 24.0 3.7 23 32-54 39-61 (77)
48 PRK02793 phi X174 lysis protei 52.3 26 0.00057 23.1 3.6 23 32-54 34-56 (72)
49 PRK09413 IS2 repressor TnpA; R 52.1 17 0.00036 25.4 2.7 28 32-59 76-103 (121)
50 PF12097 DUF3573: Protein of u 52.0 17 0.00038 31.7 3.4 24 33-56 41-64 (383)
51 PHA02592 52 DNA topisomerase I 51.7 31 0.00067 30.0 4.9 37 33-69 401-437 (439)
52 TIGR01834 PHA_synth_III_E poly 49.6 28 0.00061 29.4 4.2 35 22-56 284-318 (320)
53 PF05531 NPV_P10: Nucleopolyhe 49.5 26 0.00057 24.1 3.3 49 32-80 9-68 (75)
54 PF07820 TraC: TraC-like prote 49.1 19 0.00042 25.7 2.7 20 36-55 4-23 (92)
55 PF13863 DUF4200: Domain of un 48.2 34 0.00074 23.3 3.8 24 30-53 84-107 (126)
56 smart00338 BRLZ basic region l 48.1 44 0.00095 20.8 4.0 27 28-54 20-46 (65)
57 PF13600 DUF4140: N-terminal d 47.9 33 0.00072 22.9 3.6 24 33-56 69-92 (104)
58 PF10975 DUF2802: Protein of u 47.7 67 0.0014 21.2 5.0 40 33-72 4-43 (70)
59 PRK00295 hypothetical protein; 47.5 36 0.00079 22.2 3.7 24 31-54 30-53 (68)
60 PRK05729 valS valyl-tRNA synth 46.9 23 0.00049 32.5 3.4 26 31-56 808-833 (874)
61 PF10805 DUF2730: Protein of u 46.5 34 0.00074 23.9 3.6 32 23-54 61-92 (106)
62 TIGR02894 DNA_bind_RsfA transc 46.4 30 0.00065 26.9 3.6 25 31-55 108-132 (161)
63 PF11559 ADIP: Afadin- and alp 46.3 35 0.00076 24.3 3.7 26 30-55 62-87 (151)
64 PF10552 ORF6C: ORF6C domain; 46.0 53 0.0012 22.9 4.5 42 32-73 6-48 (116)
65 PF10152 DUF2360: Predicted co 45.9 28 0.00061 25.6 3.3 29 31-59 25-53 (148)
66 PF00170 bZIP_1: bZIP transcri 45.4 50 0.0011 20.5 4.0 20 34-53 40-59 (64)
67 PF05615 THOC7: Tho complex su 45.3 69 0.0015 22.6 5.1 46 29-74 83-128 (139)
68 PF04111 APG6: Autophagy prote 45.3 34 0.00074 28.0 4.0 29 29-57 45-73 (314)
69 PRK02119 hypothetical protein; 45.2 39 0.00085 22.4 3.6 22 33-54 36-57 (73)
70 PF02403 Seryl_tRNA_N: Seryl-t 45.2 39 0.00085 22.7 3.7 26 29-54 69-94 (108)
71 KOG3021 Predicted kinase [Gene 44.9 13 0.00028 31.5 1.5 20 24-43 164-183 (313)
72 TIGR03709 PPK2_rel_1 polyphosp 44.9 71 0.0015 26.0 5.7 49 22-70 21-80 (264)
73 PLN02678 seryl-tRNA synthetase 44.5 43 0.00093 29.2 4.6 49 30-84 74-122 (448)
74 PF04999 FtsL: Cell division p 44.4 44 0.00096 22.1 3.8 24 30-53 38-61 (97)
75 PF09849 DUF2076: Uncharacteri 44.3 31 0.00066 28.0 3.5 25 33-57 54-78 (247)
76 PRK00888 ftsB cell division pr 44.0 50 0.0011 23.2 4.1 22 34-55 41-62 (105)
77 PF01920 Prefoldin_2: Prefoldi 43.8 40 0.00086 22.0 3.4 19 36-54 64-82 (106)
78 cd00632 Prefoldin_beta Prefold 43.6 37 0.00079 23.1 3.3 18 36-53 65-82 (105)
79 PF14965 BRI3BP: Negative regu 43.4 28 0.00062 27.5 3.1 19 30-48 155-173 (177)
80 PF15011 CK2S: Casein Kinase 2 43.3 72 0.0016 24.1 5.2 59 20-79 51-112 (168)
81 PF12718 Tropomyosin_1: Tropom 43.1 31 0.00067 25.3 3.1 19 37-55 76-94 (143)
82 PF10211 Ax_dynein_light: Axon 43.1 44 0.00096 25.5 4.0 27 28-54 121-147 (189)
83 PRK00736 hypothetical protein; 42.6 47 0.001 21.7 3.6 24 31-54 30-53 (68)
84 cd04786 HTH_MerR-like_sg7 Heli 42.5 45 0.00098 23.9 3.8 37 37-76 81-117 (131)
85 PF06156 DUF972: Protein of un 42.4 47 0.001 23.7 3.8 25 29-53 3-27 (107)
86 PF04420 CHD5: CHD5-like prote 42.4 21 0.00046 26.5 2.2 28 34-61 66-93 (161)
87 TIGR02209 ftsL_broad cell divi 42.4 60 0.0013 20.7 4.1 32 30-61 34-65 (85)
88 PF14716 HHH_8: Helix-hairpin- 42.3 17 0.00037 23.0 1.4 32 30-61 29-60 (68)
89 KOG4603 TBP-1 interacting prot 41.4 36 0.00077 27.4 3.4 27 29-55 88-114 (201)
90 KOG4196 bZIP transcription fac 41.3 75 0.0016 24.3 5.0 24 29-52 76-99 (135)
91 COG3937 Uncharacterized conser 41.3 36 0.00077 25.1 3.1 22 30-51 86-107 (108)
92 TIGR01062 parC_Gneg DNA topois 41.1 47 0.001 30.8 4.6 48 29-76 348-395 (735)
93 PLN02943 aminoacyl-tRNA ligase 41.0 31 0.00066 32.4 3.4 25 32-56 887-911 (958)
94 PRK04406 hypothetical protein; 40.9 50 0.0011 22.1 3.6 21 34-54 11-31 (75)
95 PRK00888 ftsB cell division pr 40.8 56 0.0012 22.9 4.0 30 25-54 25-54 (105)
96 PRK04325 hypothetical protein; 40.6 51 0.0011 21.9 3.6 22 33-54 36-57 (74)
97 PF14197 Cep57_CLD_2: Centroso 40.5 56 0.0012 21.6 3.8 22 33-54 46-67 (69)
98 PTZ00108 DNA topoisomerase 2-l 40.3 58 0.0013 32.6 5.2 39 34-72 1102-1140(1388)
99 cd00187 TOP4c DNA Topoisomeras 40.3 40 0.00087 29.3 3.8 24 34-57 405-428 (445)
100 PF03285 Paralemmin: Paralemmi 40.0 26 0.00057 29.1 2.5 20 30-49 13-32 (278)
101 PLN03237 DNA topoisomerase 2; 40.0 52 0.0011 33.1 4.9 39 34-72 1126-1164(1465)
102 KOG3478 Prefoldin subunit 6, K 39.9 42 0.00091 25.2 3.4 28 26-53 73-102 (120)
103 PF08614 ATG16: Autophagy prot 39.8 47 0.001 24.9 3.7 27 30-56 119-145 (194)
104 PF03357 Snf7: Snf7; InterPro 39.7 54 0.0012 22.8 3.8 27 30-56 11-37 (171)
105 cd03351 LbH_UDP-GlcNAc_AT UDP- 39.5 42 0.00092 25.7 3.5 43 31-73 208-250 (254)
106 TIGR01837 PHA_granule_1 poly(h 39.3 47 0.001 23.7 3.5 22 34-55 96-117 (118)
107 PF13600 DUF4140: N-terminal d 39.3 47 0.001 22.2 3.3 28 28-55 71-98 (104)
108 PF05103 DivIVA: DivIVA protei 39.3 45 0.00097 22.7 3.3 26 30-55 28-53 (131)
109 TIGR00103 DNA_YbaB_EbfC DNA-bi 39.2 38 0.00083 23.6 2.9 28 30-57 8-35 (102)
110 PF09755 DUF2046: Uncharacteri 38.8 77 0.0017 26.9 5.2 34 20-53 13-46 (310)
111 PTZ00419 valyl-tRNA synthetase 38.8 36 0.00077 31.8 3.4 26 31-56 926-951 (995)
112 PF04859 DUF641: Plant protein 38.5 52 0.0011 24.5 3.7 25 31-55 98-122 (131)
113 PF00521 DNA_topoisoIV: DNA gy 38.3 38 0.00083 28.6 3.3 27 33-59 390-416 (426)
114 TIGR02338 gimC_beta prefoldin, 38.3 49 0.0011 22.8 3.3 21 35-55 68-88 (110)
115 PF08898 DUF1843: Domain of un 38.2 36 0.00079 22.2 2.5 17 31-47 35-51 (53)
116 PF06657 Cep57_MT_bd: Centroso 38.1 86 0.0019 21.1 4.4 44 32-75 15-71 (79)
117 TIGR00219 mreC rod shape-deter 37.9 63 0.0014 26.0 4.4 53 27-79 66-119 (283)
118 PF07061 Swi5: Swi5; InterPro 37.7 1.1E+02 0.0025 20.8 5.0 36 30-65 3-40 (83)
119 PTZ00454 26S protease regulato 37.6 57 0.0012 27.5 4.2 23 34-56 43-65 (398)
120 PHA03386 P10 fibrous body prot 37.6 61 0.0013 23.4 3.8 40 32-71 10-53 (94)
121 KOG4787 Uncharacterized conser 37.5 40 0.00086 31.9 3.5 47 31-77 519-566 (852)
122 PF04880 NUDE_C: NUDE protein, 37.5 13 0.00029 28.6 0.5 30 29-58 26-55 (166)
123 PF02609 Exonuc_VII_S: Exonucl 37.4 33 0.00072 21.0 2.2 44 30-73 6-49 (53)
124 PRK05431 seryl-tRNA synthetase 36.8 1.2E+02 0.0026 25.8 6.1 47 32-84 71-117 (425)
125 PLN02381 valyl-tRNA synthetase 36.6 41 0.00088 32.1 3.5 25 32-56 995-1019(1066)
126 smart00324 RhoGAP GTPase-activ 36.0 82 0.0018 22.1 4.3 24 58-81 55-78 (174)
127 PF09006 Surfac_D-trimer: Lung 35.9 49 0.0011 21.1 2.8 20 36-55 1-20 (46)
128 KOG4529 Uncharacterized conser 35.7 46 0.001 29.3 3.5 44 18-64 26-92 (404)
129 cd01107 HTH_BmrR Helix-Turn-He 35.6 52 0.0011 22.4 3.1 23 32-54 80-102 (108)
130 COG1792 MreC Cell shape-determ 35.5 62 0.0013 26.2 4.0 26 54-79 93-120 (284)
131 PF04728 LPP: Lipoprotein leuc 35.4 79 0.0017 20.7 3.8 21 32-52 8-28 (56)
132 PRK14626 hypothetical protein; 35.2 48 0.001 23.7 3.0 24 31-54 9-32 (110)
133 PLN02320 seryl-tRNA synthetase 35.0 1.1E+02 0.0024 27.3 5.7 51 30-86 133-183 (502)
134 PF04233 Phage_Mu_F: Phage Mu 34.7 45 0.00098 21.8 2.6 37 58-107 76-112 (112)
135 PF07106 TBPIP: Tat binding pr 34.6 61 0.0013 23.6 3.5 25 31-55 113-137 (169)
136 cd04775 HTH_Cfa-like Helix-Tur 34.3 69 0.0015 21.6 3.5 26 29-54 73-98 (102)
137 PF01920 Prefoldin_2: Prefoldi 34.2 1.1E+02 0.0023 19.9 4.3 19 33-51 11-29 (106)
138 PF12709 Kinetocho_Slk19: Cent 34.1 67 0.0015 22.7 3.5 26 30-55 45-70 (87)
139 PF04912 Dynamitin: Dynamitin 34.0 54 0.0012 27.2 3.5 24 30-53 90-113 (388)
140 TIGR00414 serS seryl-tRNA synt 33.8 85 0.0019 26.6 4.7 48 31-84 73-120 (418)
141 PF03449 GreA_GreB_N: Transcri 33.7 93 0.002 20.6 4.0 27 27-53 9-36 (74)
142 PF03885 DUF327: Protein of un 33.6 62 0.0013 23.6 3.4 28 25-52 96-123 (147)
143 PF14882 GHL12: Hypothetical g 33.5 12 0.00027 23.6 -0.2 22 72-93 6-28 (53)
144 TIGR02338 gimC_beta prefoldin, 33.3 1.1E+02 0.0023 21.1 4.4 31 34-64 24-54 (110)
145 PRK00153 hypothetical protein; 32.9 54 0.0012 22.5 2.9 28 30-57 6-33 (104)
146 PRK10636 putative ABC transpor 32.9 65 0.0014 28.4 4.0 24 33-56 562-585 (638)
147 COG3879 Uncharacterized protei 32.6 71 0.0015 26.3 3.9 26 29-54 59-84 (247)
148 PF11853 DUF3373: Protein of u 32.5 41 0.00088 30.1 2.7 19 35-53 32-50 (489)
149 PF14257 DUF4349: Domain of un 32.4 57 0.0012 25.2 3.2 21 35-55 163-183 (262)
150 PRK14623 hypothetical protein; 32.4 56 0.0012 23.4 3.0 23 32-54 6-28 (106)
151 COG4985 ABC-type phosphate tra 32.3 62 0.0014 27.3 3.6 27 28-54 215-241 (289)
152 PRK09039 hypothetical protein; 32.2 64 0.0014 26.7 3.6 28 30-57 140-167 (343)
153 PRK09343 prefoldin subunit bet 32.1 68 0.0015 22.8 3.4 23 34-56 71-93 (121)
154 PRK05561 DNA topoisomerase IV 32.1 95 0.0021 28.6 5.0 43 34-76 437-484 (742)
155 TIGR00422 valS valyl-tRNA synt 31.9 55 0.0012 29.9 3.5 26 30-55 812-837 (861)
156 PF08826 DMPK_coil: DMPK coile 31.8 77 0.0017 20.8 3.3 18 36-53 41-58 (61)
157 PF09432 THP2: Tho complex sub 31.6 1.3E+02 0.0029 22.9 4.9 46 28-73 79-126 (132)
158 PF02575 YbaB_DNA_bd: YbaB/Ebf 31.5 69 0.0015 20.9 3.1 26 33-58 1-26 (93)
159 cd01109 HTH_YyaN Helix-Turn-He 31.2 1E+02 0.0022 21.0 4.0 25 30-54 82-106 (113)
160 PRK05560 DNA gyrase subunit A; 30.8 1E+02 0.0022 28.6 5.0 47 29-75 351-397 (805)
161 PF02344 Myc-LZ: Myc leucine z 30.7 1.2E+02 0.0027 18.0 3.9 27 29-55 3-29 (32)
162 PF14193 DUF4315: Domain of un 30.6 94 0.002 21.4 3.7 33 40-72 21-59 (83)
163 PF12709 Kinetocho_Slk19: Cent 30.5 85 0.0018 22.2 3.5 23 30-52 52-74 (87)
164 PF07047 OPA3: Optic atrophy 3 30.5 80 0.0017 22.8 3.5 20 34-53 112-131 (134)
165 PRK14629 hypothetical protein; 30.5 64 0.0014 22.9 2.9 24 32-55 8-31 (99)
166 COG1382 GimC Prefoldin, chaper 30.5 93 0.002 23.0 3.9 24 31-54 81-104 (119)
167 TIGR02047 CadR-PbrR Cd(II)/Pb( 30.5 1E+02 0.0022 21.7 4.0 26 30-55 82-107 (127)
168 PRK14127 cell division protein 30.5 88 0.0019 22.6 3.7 24 32-55 35-58 (109)
169 PRK05561 DNA topoisomerase IV 30.3 92 0.002 28.7 4.6 47 29-75 361-407 (742)
170 COG2456 Uncharacterized conser 30.2 70 0.0015 24.0 3.2 23 29-51 88-110 (121)
171 PF10066 DUF2304: Uncharacteri 30.1 65 0.0014 22.4 2.9 20 30-49 89-108 (115)
172 PF05377 FlaC_arch: Flagella a 29.9 1.1E+02 0.0023 20.0 3.7 25 31-55 11-35 (55)
173 PRK00587 hypothetical protein; 29.7 67 0.0015 22.7 3.0 23 32-54 6-28 (99)
174 PF08537 NBP1: Fungal Nap bind 29.6 66 0.0014 27.5 3.4 23 32-54 180-202 (323)
175 PF04156 IncA: IncA protein; 29.4 67 0.0015 23.4 3.0 25 31-55 78-102 (191)
176 cd04789 HTH_Cfa Helix-Turn-Hel 29.4 96 0.0021 21.0 3.6 26 29-54 73-98 (102)
177 COG3599 DivIVA Cell division i 29.3 86 0.0019 24.9 3.8 28 29-56 39-66 (212)
178 PRK10227 DNA-binding transcrip 29.3 1.1E+02 0.0023 22.1 4.0 27 29-55 81-107 (135)
179 PF14735 HAUS4: HAUS augmin-li 29.2 95 0.0021 25.0 4.1 31 29-59 180-210 (238)
180 PF07303 Occludin_ELL: Occludi 29.1 98 0.0021 21.7 3.7 26 30-55 25-50 (101)
181 PF11932 DUF3450: Protein of u 29.0 96 0.0021 24.0 4.0 11 35-45 57-67 (251)
182 cd04776 HTH_GnyR Helix-Turn-He 29.0 93 0.002 21.7 3.6 24 32-55 85-108 (118)
183 cd00159 RhoGAP RhoGAP: GTPase- 29.0 1.2E+02 0.0027 20.6 4.1 38 43-80 31-73 (169)
184 TIGR01061 parC_Gpos DNA topois 28.8 95 0.0021 28.6 4.4 48 29-76 348-395 (738)
185 PF09278 MerR-DNA-bind: MerR, 28.7 1E+02 0.0023 18.5 3.4 24 31-54 40-63 (65)
186 KOG2077 JNK/SAPK-associated pr 28.5 69 0.0015 30.3 3.5 22 31-53 348-369 (832)
187 PF04201 TPD52: Tumour protein 28.5 96 0.0021 24.1 3.8 25 28-52 30-54 (162)
188 COG1382 GimC Prefoldin, chaper 28.4 1.5E+02 0.0032 21.9 4.7 34 32-65 25-58 (119)
189 COG2919 Septum formation initi 28.2 89 0.0019 22.1 3.4 36 32-67 62-98 (117)
190 PRK13922 rod shape-determining 28.2 76 0.0016 24.7 3.3 27 34-60 69-95 (276)
191 PRK14622 hypothetical protein; 28.1 82 0.0018 22.2 3.2 25 30-54 4-28 (103)
192 PF09059 TyeA: TyeA; InterPro 28.0 11 0.00024 26.3 -1.2 42 7-54 6-52 (87)
193 PF03087 DUF241: Arabidopsis p 28.0 94 0.002 24.3 3.8 29 25-53 189-217 (231)
194 cd04769 HTH_MerR2 Helix-Turn-H 28.0 1.1E+02 0.0024 21.0 3.8 26 30-55 82-107 (116)
195 cd04770 HTH_HMRTR Helix-Turn-H 27.9 95 0.002 21.2 3.4 25 30-54 82-106 (123)
196 PRK14627 hypothetical protein; 27.9 75 0.0016 22.2 2.9 23 32-54 6-28 (100)
197 PRK14621 hypothetical protein; 27.8 76 0.0017 22.8 3.0 25 30-54 7-31 (111)
198 PF02370 M: M protein repeat; 27.8 1.1E+02 0.0024 16.6 3.4 20 35-54 2-21 (21)
199 TIGR03689 pup_AAA proteasome A 27.6 84 0.0018 27.9 3.8 26 29-54 17-42 (512)
200 TIGR01063 gyrA DNA gyrase, A s 27.6 1.2E+02 0.0026 28.2 4.8 47 29-75 348-394 (800)
201 PF04380 BMFP: Membrane fusoge 27.6 1.1E+02 0.0024 20.4 3.6 24 32-55 55-78 (79)
202 PF13815 Dzip-like_N: Iguana/D 27.4 72 0.0016 22.3 2.8 17 36-52 82-98 (118)
203 TIGR02231 conserved hypothetic 27.2 97 0.0021 26.5 4.0 38 34-71 71-108 (525)
204 COG0718 Uncharacterized protei 27.2 87 0.0019 22.6 3.2 28 31-58 9-36 (105)
205 PF06698 DUF1192: Protein of u 27.0 1.3E+02 0.0028 19.7 3.7 29 24-52 18-46 (59)
206 PF10211 Ax_dynein_light: Axon 26.9 1.1E+02 0.0024 23.3 4.0 30 28-57 112-143 (189)
207 PF04568 IATP: Mitochondrial A 26.8 1.2E+02 0.0026 21.6 3.8 18 38-55 80-97 (100)
208 smart00150 SPEC Spectrin repea 26.8 1.4E+02 0.003 18.0 3.7 34 23-56 27-60 (101)
209 PRK03992 proteasome-activating 26.8 1.1E+02 0.0025 25.2 4.2 32 30-61 25-56 (389)
210 PRK11637 AmiB activator; Provi 26.7 98 0.0021 25.8 3.9 22 33-54 95-116 (428)
211 PRK09039 hypothetical protein; 26.5 87 0.0019 25.9 3.5 12 32-43 156-167 (343)
212 cd04392 RhoGAP_ARHGAP19 RhoGAP 26.4 1.4E+02 0.003 22.8 4.3 23 59-81 61-83 (208)
213 PF03980 Nnf1: Nnf1 ; InterPr 26.4 1.4E+02 0.003 20.3 4.0 22 31-52 84-105 (109)
214 PF05873 Mt_ATP-synt_D: ATP sy 26.4 90 0.002 23.4 3.3 29 33-61 102-130 (161)
215 cd01106 HTH_TipAL-Mta Helix-Tu 26.2 1.3E+02 0.0028 20.1 3.7 19 36-54 75-93 (103)
216 PF07412 Geminin: Geminin; In 26.1 89 0.0019 25.0 3.4 34 37-70 135-168 (200)
217 PF04111 APG6: Autophagy prote 26.1 1.1E+02 0.0025 25.0 4.1 24 31-54 61-84 (314)
218 KOG0930 Guanine nucleotide exc 26.1 99 0.0022 27.0 3.9 34 30-63 27-60 (395)
219 PF15372 DUF4600: Domain of un 26.0 82 0.0018 23.6 3.0 26 32-57 12-38 (129)
220 PF00435 Spectrin: Spectrin re 26.0 1.6E+02 0.0034 17.8 3.9 32 23-54 30-61 (105)
221 PRK14625 hypothetical protein; 26.0 83 0.0018 22.6 2.9 24 31-54 6-29 (109)
222 TIGR02044 CueR Cu(I)-responsiv 25.9 1.4E+02 0.003 20.8 4.0 26 30-55 82-107 (127)
223 PF03357 Snf7: Snf7; InterPro 25.7 1.5E+02 0.0032 20.6 4.1 25 30-54 4-28 (171)
224 PF14662 CCDC155: Coiled-coil 25.3 1.2E+02 0.0025 24.3 3.9 26 28-53 82-107 (193)
225 KOG2483 Upstream transcription 25.3 1.2E+02 0.0025 24.6 3.9 29 30-58 115-143 (232)
226 PF11464 Rbsn: Rabenosyn Rab b 25.2 1.3E+02 0.0027 18.7 3.2 23 30-52 18-40 (42)
227 PF08618 Opi1: Transcription f 25.1 1.5E+02 0.0032 26.2 4.7 24 32-55 240-263 (427)
228 cd04373 RhoGAP_p190 RhoGAP_p19 25.1 1.2E+02 0.0027 22.4 3.8 31 58-94 67-97 (185)
229 PF13334 DUF4094: Domain of un 25.0 1E+02 0.0023 21.5 3.2 30 22-51 60-90 (95)
230 PF14357 DUF4404: Domain of un 25.0 1.2E+02 0.0026 20.5 3.4 34 39-72 2-36 (85)
231 smart00434 TOP4c DNA Topoisome 25.0 82 0.0018 27.2 3.2 26 34-59 415-440 (445)
232 PF07439 DUF1515: Protein of u 24.9 1.1E+02 0.0023 22.8 3.4 31 32-62 6-36 (112)
233 PHA03395 p10 fibrous body prot 24.9 1.5E+02 0.0033 21.0 4.0 41 32-72 9-60 (87)
234 PF03195 DUF260: Protein of un 24.8 90 0.0019 22.0 2.9 19 35-53 79-97 (101)
235 PF13815 Dzip-like_N: Iguana/D 24.6 1.4E+02 0.003 20.9 3.8 19 34-52 94-112 (118)
236 TIGR02976 phageshock_pspB phag 24.6 95 0.0021 21.0 2.9 25 32-56 40-64 (75)
237 PF08655 DASH_Ask1: DASH compl 24.6 60 0.0013 21.8 1.8 17 36-52 1-17 (66)
238 PF09311 Rab5-bind: Rabaptin-l 24.6 25 0.00055 26.4 0.0 15 40-54 56-70 (181)
239 cd00049 MH1 MH1 is a small DNA 24.5 40 0.00086 24.8 1.1 7 85-92 77-83 (121)
240 PRK05771 V-type ATP synthase s 24.5 1.3E+02 0.0027 26.6 4.3 26 30-55 218-243 (646)
241 PF11855 DUF3375: Protein of u 24.4 93 0.002 26.9 3.4 23 34-56 144-166 (478)
242 PRK13848 conjugal transfer pro 24.4 79 0.0017 23.0 2.5 18 38-55 7-24 (98)
243 PRK10265 chaperone-modulator p 24.4 1.6E+02 0.0035 20.1 4.1 14 41-54 78-91 (101)
244 TIGR02894 DNA_bind_RsfA transc 24.1 1.1E+02 0.0024 23.8 3.5 25 31-55 101-125 (161)
245 PF05679 CHGN: Chondroitin N-a 24.0 1.1E+02 0.0025 26.4 3.9 31 25-55 72-104 (499)
246 TIGR00634 recN DNA repair prot 23.9 1.1E+02 0.0024 26.6 3.8 25 35-59 183-207 (563)
247 PRK11091 aerobic respiration c 23.8 2.5E+02 0.0054 24.5 5.9 32 65-96 156-191 (779)
248 PRK05771 V-type ATP synthase s 23.8 1E+02 0.0023 27.1 3.7 21 34-54 100-120 (646)
249 PF10205 KLRAQ: Predicted coil 23.6 1.3E+02 0.0028 21.8 3.5 14 38-51 58-71 (102)
250 PF13864 Enkurin: Calmodulin-b 23.6 1.6E+02 0.0034 19.9 3.8 34 19-55 62-95 (98)
251 cd04772 HTH_TioE_rpt1 First He 23.5 71 0.0015 21.6 2.1 21 34-54 76-96 (99)
252 KOG0080 GTPase Rab18, small G 23.4 45 0.00097 27.0 1.2 19 66-84 28-46 (209)
253 cd07637 BAR_ACAP3 The Bin/Amph 23.4 79 0.0017 24.5 2.6 23 34-56 2-24 (200)
254 COG4550 Predicted membrane pro 23.3 1.3E+02 0.0028 22.6 3.6 28 27-57 60-87 (120)
255 cd00089 HR1 Protein kinase C-r 23.2 1.5E+02 0.0032 18.9 3.4 29 28-56 43-71 (72)
256 COG0525 ValS Valyl-tRNA synthe 23.2 89 0.0019 30.0 3.3 39 18-56 798-836 (877)
257 cd04785 HTH_CadR-PbrR-like Hel 23.1 1.3E+02 0.0028 21.0 3.4 23 32-54 84-106 (126)
258 COG3132 Uncharacterized protei 23.0 1.2E+02 0.0026 24.7 3.6 24 32-55 190-213 (215)
259 PF08700 Vps51: Vps51/Vps67; 22.9 1.8E+02 0.0038 18.4 3.8 24 30-53 22-45 (87)
260 PRK13130 H/ACA RNA-protein com 22.9 51 0.0011 21.4 1.2 15 22-36 36-50 (56)
261 PRK03762 hypothetical protein; 22.8 1.1E+02 0.0023 21.8 2.9 26 29-54 7-32 (103)
262 KOG2691 RNA polymerase II subu 22.8 44 0.00095 24.9 1.0 15 72-86 62-76 (113)
263 cd01282 HTH_MerR-like_sg3 Heli 22.8 1.5E+02 0.0032 20.3 3.6 25 30-54 84-108 (112)
264 PRK14900 valS valyl-tRNA synth 22.8 88 0.0019 29.8 3.2 26 30-55 845-870 (1052)
265 PRK10803 tol-pal system protei 22.7 1.1E+02 0.0024 24.3 3.3 18 33-50 60-77 (263)
266 COG3883 Uncharacterized protei 22.5 1.2E+02 0.0025 25.3 3.5 14 37-50 76-89 (265)
267 PF11068 YlqD: YlqD protein; 22.3 1.7E+02 0.0038 21.5 4.1 26 30-55 23-48 (131)
268 COG1722 XseB Exonuclease VII s 22.3 55 0.0012 22.4 1.4 40 34-73 21-60 (81)
269 KOG3251 Golgi SNAP receptor co 22.3 2E+02 0.0043 23.3 4.7 37 36-72 5-44 (213)
270 PF07028 DUF1319: Protein of u 22.2 1.3E+02 0.0027 22.7 3.3 23 33-55 59-81 (126)
271 PF09340 NuA4: Histone acetylt 22.1 1.4E+02 0.0031 20.0 3.4 20 36-55 11-30 (80)
272 PF08232 Striatin: Striatin fa 22.0 95 0.0021 22.6 2.6 24 37-60 28-51 (134)
273 PF03148 Tektin: Tektin family 21.9 2E+02 0.0043 24.1 4.8 48 29-76 59-110 (384)
274 PF10018 Med4: Vitamin-D-recep 21.9 1.5E+02 0.0033 22.2 3.8 20 32-51 27-46 (188)
275 PRK11239 hypothetical protein; 21.8 1.2E+02 0.0026 24.6 3.4 24 32-55 188-211 (215)
276 TIGR01242 26Sp45 26S proteasom 21.8 1.6E+02 0.0034 23.7 4.1 31 31-61 17-47 (364)
277 PF10393 Matrilin_ccoil: Trime 21.8 1.9E+02 0.004 18.2 3.6 25 31-55 20-44 (47)
278 PF10779 XhlA: Haemolysin XhlA 21.7 2.3E+02 0.005 18.2 4.8 30 31-60 3-32 (71)
279 PF11853 DUF3373: Protein of u 21.6 90 0.002 28.0 2.9 24 34-58 25-48 (489)
280 PF05008 V-SNARE: Vesicle tran 21.6 2.1E+02 0.0045 18.0 3.9 25 27-51 54-78 (79)
281 PRK14900 valS valyl-tRNA synth 21.6 82 0.0018 30.0 2.7 28 31-58 839-866 (1052)
282 PF00521 DNA_topoisoIV: DNA gy 21.5 1.9E+02 0.0042 24.4 4.7 47 29-75 314-360 (426)
283 PF12017 Tnp_P_element: Transp 21.5 1.9E+02 0.0042 23.2 4.5 25 30-54 14-38 (236)
284 cd04782 HTH_BltR Helix-Turn-He 21.4 1.3E+02 0.0028 20.1 3.0 22 35-56 75-96 (97)
285 cd04787 HTH_HMRTR_unk Helix-Tu 21.3 1.9E+02 0.0041 20.4 4.0 25 30-54 82-106 (133)
286 cd01108 HTH_CueR Helix-Turn-He 21.3 1.5E+02 0.0032 20.7 3.4 24 31-54 83-106 (127)
287 PRK13979 DNA topoisomerase IV 21.2 1.8E+02 0.0038 28.0 4.8 47 29-75 367-413 (957)
288 cd04768 HTH_BmrR-like Helix-Tu 21.1 1.3E+02 0.0029 20.0 3.0 22 35-56 74-95 (96)
289 PF12107 VEK-30: Plasminogen ( 21.1 82 0.0018 16.5 1.5 9 34-42 3-11 (17)
290 KOG0652 26S proteasome regulat 21.1 1.4E+02 0.0031 26.1 3.9 40 3-53 7-46 (424)
291 cd01878 HflX HflX subfamily. 21.0 1.6E+02 0.0034 20.9 3.5 20 35-54 7-26 (204)
292 cd04383 RhoGAP_srGAP RhoGAP_sr 21.0 89 0.0019 23.3 2.4 22 60-81 73-94 (188)
293 PF13747 DUF4164: Domain of un 20.8 1.1E+02 0.0024 20.9 2.6 39 30-68 35-74 (89)
294 COG1729 Uncharacterized protei 20.7 81 0.0017 26.0 2.2 27 34-60 56-82 (262)
295 PF01486 K-box: K-box region; 20.7 1.9E+02 0.0042 19.4 3.8 38 30-67 15-52 (100)
296 PF03234 CDC37_N: Cdc37 N term 20.6 1.5E+02 0.0031 23.0 3.5 27 29-55 133-159 (177)
297 PF06251 Caps_synth_GfcC: Caps 20.6 74 0.0016 24.4 1.9 29 50-78 85-116 (229)
298 PF02050 FliJ: Flagellar FliJ 20.6 2.2E+02 0.0047 18.0 3.8 22 31-52 56-77 (123)
299 cd04389 RhoGAP_KIAA1688 RhoGAP 20.5 2.1E+02 0.0045 21.4 4.3 31 58-94 72-102 (187)
300 PF09726 Macoilin: Transmembra 20.5 1.4E+02 0.003 27.5 3.9 24 32-55 550-573 (697)
301 PF04423 Rad50_zn_hook: Rad50 20.5 1.6E+02 0.0034 17.8 3.0 23 28-51 32-54 (54)
302 PF06005 DUF904: Protein of un 20.3 2.2E+02 0.0048 18.9 4.0 19 35-53 12-30 (72)
303 PRK05289 UDP-N-acetylglucosami 20.3 1.9E+02 0.004 22.6 4.1 44 30-73 210-253 (262)
304 PRK14145 heat shock protein Gr 20.3 79 0.0017 24.9 2.0 20 34-53 45-64 (196)
305 PF11083 Streptin-Immun: Lanti 20.3 1.2E+02 0.0027 21.9 2.9 18 35-52 53-70 (99)
306 PRK13169 DNA replication intia 20.2 1.9E+02 0.004 20.9 3.8 17 35-51 9-25 (110)
307 PRK14624 hypothetical protein; 20.2 1.3E+02 0.0028 21.9 2.9 24 32-55 11-34 (115)
308 PF05064 Nsp1_C: Nsp1-like C-t 20.1 1.2E+02 0.0026 21.4 2.7 34 37-80 74-107 (116)
No 1
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=99.75 E-value=2.6e-19 Score=116.17 Aligned_cols=68 Identities=37% Similarity=0.707 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccCCCCChhhHHhhcCCCCCCCcccccC
Q 033950 33 LAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNSPINPIWDRWFEGPQDARGCRCMIL 107 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g~~~~~WdrWfegp~~s~~c~cwil 107 (107)
++++.+|.+||.+|++||+. +++ +||.||++|++|+++.+|||||...||.+..|..|+++ ++| ||||
T Consensus 1 ~~~~~~l~~ei~~L~~el~~-~r~-~vS~a~~~li~y~~~~~DPll~~~~~p~~~~~NPw~~~----~~~-C~il 68 (68)
T PF00631_consen 1 KQEKDQLKREIEQLRQELER-ERI-KVSKACKELIEYCESTPDPLLPGPWGPPSSSSNPWIEK----DGC-CWIL 68 (68)
T ss_dssp -THHHHHHHHHHHHHHHHTS------HHHHHHHHHHHHHGTC-HHHHT--SS--GGGSTTCC-----STH-HHHH
T ss_pred ChHHHHHHHHHHHHHHHHcc-cce-eHHHHHHHHHHHhcCCCCceeCCCCCCCCccCCCCcCC----CCC-eeeC
Confidence 36788999999999999999 999 99999999999999999999999999999999999999 677 9985
No 2
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=97.92 E-value=1.7e-05 Score=50.63 Aligned_cols=51 Identities=37% Similarity=0.524 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcC--CCCcccccCCCCChhh
Q 033950 37 KRVEQESRFLEEELEELDKTENVSTICDELLKFMEAR--PDPLLSVTNSPINPIW 89 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~--pDPLLP~t~g~~~~~W 89 (107)
+.+.+++.+|+.||.- .--++|.+|.+++.|++.. .||||+...++.|+..
T Consensus 2 ~~~~~~veqLr~el~~--~RikvS~a~~~l~~y~e~~~~~Dpll~g~~~~~NP~~ 54 (57)
T cd00068 2 DQLKKEVEQLRKELSR--ERLKVSKAAAELLKYCEQNAENDPLLTGPPSPSNPWI 54 (57)
T ss_pred HHHHHHHHHHHHHHCC--chhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Confidence 4677888888888765 3668999999999999999 9999998877778754
No 3
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=97.36 E-value=0.00037 Score=45.23 Aligned_cols=51 Identities=33% Similarity=0.494 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhh--cCCCCcccccCCCCChhh
Q 033950 37 KRVEQESRFLEEELEELDKTENVSTICDELLKFME--ARPDPLLSVTNSPINPIW 89 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLLP~t~g~~~~~W 89 (107)
+.+.+++.+|+.||+- .--++|.+|.+++.|++ ..-||||.-.....|+..
T Consensus 2 ~~~~~~ve~Lr~el~~--~RikvS~a~~~li~y~e~~~~~DP~l~g~~~~~NP~~ 54 (63)
T smart00224 2 DQLRKEVEQLRKELSR--ERIKVSKAAEELLAYCEQHAEEDPLLTGPPPSKNPFI 54 (63)
T ss_pred hHHHHHHHHHHHHHCC--ceehHHHHHHHHHHHHHcCCCCCCCcCCCCCCCCCCC
Confidence 5678888899988875 36689999999999999 456677643322235543
No 4
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=95.86 E-value=0.022 Score=38.82 Aligned_cols=52 Identities=29% Similarity=0.393 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCC--CCcccccCCCCChh
Q 033950 35 ELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARP--DPLLSVTNSPINPI 88 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p--DPLLP~t~g~~~~~ 88 (107)
++.++..++..|..|+.. | -.++|.+|+|+.+|+|... |||+-.-....|++
T Consensus 8 ~~~q~k~~VeqLk~e~~~-~-R~~vS~a~~el~~y~E~~~~~DpLl~gv~~~~NPf 61 (71)
T KOG4119|consen 8 KKPQMKKEVEQLKLEANI-E-RIKVSKAAAELLEYCETHATEDPLLEGVPEKENPF 61 (71)
T ss_pred chHHHHHHHHHHHHHHHh-h-HhhHHHHHHHHHHHHHhcCccCccccCCccccCCC
Confidence 455666667777766643 3 6789999999999999988 99986555556654
No 5
>PRK14011 prefoldin subunit alpha; Provisional
Probab=95.11 E-value=0.039 Score=41.16 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccCCC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNSP 84 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g~ 84 (107)
.++.+|+.+.+||..|+.+|..|.....=-..|+|.+..+....+=|+|+|.|-
T Consensus 7 ~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~ 60 (144)
T PRK14011 7 NQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGA 60 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCc
Confidence 577899999999999999999999887777889999998888888899998874
No 6
>PRK01203 prefoldin subunit alpha; Provisional
Probab=92.81 E-value=0.2 Score=37.29 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhh--cCCCCcccccCCC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFME--ARPDPLLSVTNSP 84 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLLP~t~g~ 84 (107)
-+.++++.|++||..|+++|+.|.....=-..|+|.+.... ...+=|+|.|.|-
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~sl 59 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGI 59 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCc
Confidence 45689999999999999999999887766677888887764 4566789998774
No 7
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=92.55 E-value=0.24 Score=34.34 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcC--CCCcccccCCC
Q 033950 32 ILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEAR--PDPLLSVTNSP 84 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~--pDPLLP~t~g~ 84 (107)
+++.+++|.+++..|+..+.+|+..-+--..+++++.++... .+=|+|++.+-
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~ 58 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGS 58 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCe
Confidence 567788888888888888888888887778889999999876 33467877654
No 8
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=90.73 E-value=0.53 Score=35.43 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCC---CCcccccCCC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARP---DPLLSVTNSP 84 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p---DPLLP~t~g~ 84 (107)
.++.|+++.|+++|..|+-++..|+-.-.-=+-|++-++++.+.. -=|+|+..|-
T Consensus 9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~ 66 (145)
T COG1730 9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGL 66 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCc
Confidence 468899999999999999999999999888889999999998876 5688877664
No 9
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=90.46 E-value=0.64 Score=32.93 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcC---CCCcccccCC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEAR---PDPLLSVTNS 83 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~---pDPLLP~t~g 83 (107)
..+++.+++|.++|..|+..+..|+..-+--..+++.+.++... .+=|+|++.+
T Consensus 9 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~ 65 (140)
T PRK03947 9 EELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAG 65 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCC
Confidence 35677888999999999999999988888888899999998853 3345676654
No 10
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.78 E-value=0.73 Score=33.55 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=34.7
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 033950 19 AAGGGTDTTGKHRILAELKRVEQESRFLEEELEELDKTENV 59 (107)
Q Consensus 19 ~~~~~~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~~~a 59 (107)
+.++.|..----|+++.|.+++-|+..|++||..|+.....
T Consensus 8 ~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~ 48 (120)
T PF12325_consen 8 TSSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDE 48 (120)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788888999999999999999999999999876543
No 11
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=84.24 E-value=3.2 Score=28.44 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (107)
+....++|..|..+|..|+.++..++..=.-...|++++..|-...+.
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~~~e 123 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVPKSPE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 445667788888888888888887777766677889988888766554
No 12
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=83.70 E-value=2.7 Score=29.18 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhc---CCCCcccccCC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEA---RPDPLLSVTNS 83 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves---~pDPLLP~t~g 83 (107)
-+++.+++|.++|..|+.++..|...-.--..+++.+..+.. ..+=|+|++.+
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~ 58 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAG 58 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCC
Confidence 356778888888888888888888877777788888888864 33456777664
No 13
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=83.34 E-value=2.2 Score=26.51 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 29 KHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
..|...++++++++++-+|.|+++|
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677788999999999999998875
No 14
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=78.68 E-value=3.5 Score=26.37 Aligned_cols=24 Identities=46% Similarity=0.689 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+.+++.+|+.++.-++.++..+++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999988888775
No 15
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=76.35 E-value=4.8 Score=27.77 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 30 HRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
|-|+-+-.+|.+||+-||.||+++-
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688888999999999999998853
No 16
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=74.42 E-value=7.6 Score=23.80 Aligned_cols=27 Identities=37% Similarity=0.407 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 28 GKHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.|.|..+.+..|++++.+|+.|...|.
T Consensus 19 ~R~rkk~~~~~le~~~~~L~~en~~L~ 45 (54)
T PF07716_consen 19 SRQRKKQREEELEQEVQELEEENEQLR 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777763
No 17
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=70.61 E-value=9 Score=29.30 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=33.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 033950 24 TDTTGKHRILAELKRVEQESRFLEEELEELDKTENVST 61 (107)
Q Consensus 24 ~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~ 61 (107)
++.-.|..++++++.|..++..|+.||+.+...+|...
T Consensus 100 ~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i 137 (188)
T PF03962_consen 100 EESEEREELLEELEELKKELKELKKELEKYSENDPEKI 137 (188)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 45588999999999999999999999999888887654
No 18
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=69.95 E-value=9.4 Score=23.39 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
-+..+|+.|+.+...|+.++..|+
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788889999999998888876
No 19
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.59 E-value=9.5 Score=23.75 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 033950 33 LAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~L 53 (107)
+.+++.|.+++.-|+.|++.|
T Consensus 30 ~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 30 QKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555
No 20
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.29 E-value=9.2 Score=23.82 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 28 GKHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
-..++.++++.|++++.-|+.|.++|+.
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999888888753
No 21
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=68.77 E-value=8.1 Score=30.04 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=43.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCccc
Q 033950 25 DTTGKHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLS 79 (107)
Q Consensus 25 d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP 79 (107)
.+.....+.+|.++|.+|+..|+.++.+++-+..-..-.++++.+....+-++++
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~~~~~i~ 121 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLDYQFIT 121 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCceEE
Confidence 3455677888999999999999999998888877778888888887766544444
No 22
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=64.91 E-value=14 Score=23.54 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVS 60 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS 60 (107)
+.+.+.+|...++.|.+|+++|+.+......+
T Consensus 35 ~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~~~ 66 (70)
T PF02185_consen 35 LSEAESQLRESNQKIELLREQLEKLQQRSQNS 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 66788899999999999999999998765543
No 23
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=64.04 E-value=21 Score=24.09 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCC
Q 033950 32 ILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (107)
+.+.+++|+++|..|+..+..|.....--..+++.+..+....+.
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~ 48 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEE 48 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 456677777777777777777776666666777777777655444
No 24
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.04 E-value=26 Score=25.55 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVST 61 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~ 61 (107)
.-.++.++..|+++++-|+.||..|.......-
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e 113 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEE 113 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 456777888888899999999999988886554
No 25
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=62.28 E-value=16 Score=28.35 Aligned_cols=54 Identities=22% Similarity=0.245 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCC---CcccccC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPD---PLLSVTN 82 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pD---PLLP~t~ 82 (107)
-.-+-+=.++++||+.||++-|..|-|.+---+.|++-+.-|..+++ -|+|.|.
T Consensus 15 leQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~eGk~~LVPLTs 71 (153)
T KOG3048|consen 15 LEQLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAANEGKKLLVPLTS 71 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEEEeccc
Confidence 34455667899999999999999999999888889988887766665 3566554
No 26
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=61.64 E-value=20 Score=22.41 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
|.|..+.++.|+.++..|+.|...|.
T Consensus 21 R~RKk~~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 21 RQRKKQYIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777766664
No 27
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=61.22 E-value=17 Score=28.74 Aligned_cols=41 Identities=41% Similarity=0.596 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-CchhHHhHHHHHhhh
Q 033950 31 RILAELKRVEQESRFLEEELEELDKT-ENVSTICDELLKFME 71 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~-~~aS~~CkEv~~~Ve 71 (107)
.++|.|++.+=.+..|++.|++-..= +.-.+.|.||+.-|+
T Consensus 165 aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 165 ALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47788888888888888888776553 667789999998775
No 28
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=60.92 E-value=2.9 Score=29.38 Aligned_cols=25 Identities=44% Similarity=0.551 Sum_probs=0.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCch
Q 033950 35 ELKRVEQESRFLEEELEELDKTENV 59 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~~~a 59 (107)
+|.+|+.|+..|++++.+||.....
T Consensus 21 ~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 21 ELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ----------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444455555555555554444
No 29
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=60.59 E-value=7.1 Score=30.41 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 033950 36 LKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~~~ 57 (107)
|++||+.+..|++||++|..-.
T Consensus 1 I~~LE~~~~~l~~e~~~Lk~~p 22 (176)
T PF10737_consen 1 IQRLEQRLQELQQELEELKQQP 22 (176)
T ss_pred ChHHHHHHHHHHHHHHHHHhCC
Confidence 4678888888888888876543
No 30
>PF14282 FlxA: FlxA-like protein
Probab=60.56 E-value=11 Score=26.27 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 033950 33 LAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
...|..|+++|.-|+++|++|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999976
No 31
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=60.15 E-value=2.9 Score=29.35 Aligned_cols=27 Identities=44% Similarity=0.587 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
|-++..+++.||++|.+|+-||..|-.
T Consensus 8 k~~laK~~~~LE~~l~~l~~el~~L~~ 34 (118)
T PF08286_consen 8 KFRLAKELSDLESELESLQSELEELKE 34 (118)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888999999999988877643
No 32
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=59.95 E-value=12 Score=29.19 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhh
Q 033950 37 KRVEQESRFLEEELEELDKTENVSTICDELLKFME 71 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (107)
+.|+.||+-|+.|++.||+++.-+...|.=..+++
T Consensus 123 ~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~ 157 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLE 157 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999988887765444443
No 33
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.45 E-value=12 Score=33.14 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHH
Q 033950 27 TGKHRILAELKRVEQESRFLEEELEELDKTENVSTICDE 65 (107)
Q Consensus 27 ~GKhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkE 65 (107)
.+-|-++.....|.+||.||++|++.... .+-.|||+
T Consensus 233 ~~V~~L~~~~~~L~kqie~L~qeie~~~~--~~r~~~k~ 269 (439)
T KOG2911|consen 233 GSVADLIQARAKLAKQIEFLEQEIEKSKE--KLRQALKE 269 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 57788999999999999999999998753 23356665
No 34
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=59.18 E-value=20 Score=22.95 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 033950 31 RILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~L 53 (107)
...++++.+++++..+++|-++|
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L 50 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDL 50 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444433
No 35
>PRK14127 cell division protein GpsB; Provisional
Probab=58.38 E-value=16 Score=26.37 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
++.+++..|..|+..|+++|.+++.--
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677778888888888887777643
No 36
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=57.85 E-value=4.1 Score=27.50 Aligned_cols=43 Identities=26% Similarity=0.433 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhc---CCCCcccccCC
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEA---RPDPLLSVTNS 83 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves---~pDPLLP~t~g 83 (107)
++++.|++++.+|++.+.+++.+ ++.+..... ..+-|+|++.+
T Consensus 3 ~~l~~l~~~~~~l~~~~~e~~~~-------~~~l~~l~~~~~~~~~lvplg~~ 48 (120)
T PF02996_consen 3 EELENLQQQIEQLEEQIEEYEEA-------KETLEELKKEKKEHEILVPLGSG 48 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHTT--TT-EEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhccCCCceeeecCCCC
Confidence 35677777777777777776532 333333322 34456676655
No 37
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.79 E-value=29 Score=26.90 Aligned_cols=50 Identities=28% Similarity=0.459 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----hhHHhHHHHHhhhcCCCCcccc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTEN-----VSTICDELLKFMEARPDPLLSV 80 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~-----aS~~CkEv~~~Ves~pDPLLP~ 80 (107)
.++...++.++++|.-|++++++++++.. .-+...++-.||+.-. ||+..
T Consensus 73 ~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~-Pf~~~ 127 (251)
T PF11932_consen 73 EQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDL-PFLLE 127 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCChH
Confidence 45566677777777777777777775433 2237788888888654 66654
No 38
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=57.32 E-value=13 Score=30.83 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCch
Q 033950 33 LAELKRVEQESRFLEEELEELDKTENV 59 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~a 59 (107)
+++.+.||.-|.-||.||+.||+-..+
T Consensus 9 EqKtR~LEesI~RLEkEIe~LE~~es~ 35 (278)
T PF03285_consen 9 EQKTRSLEESIHRLEKEIEALENGESQ 35 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 356677777777777777777775443
No 39
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=56.52 E-value=13 Score=24.11 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.+.+|.+|+++++.|.+.|++++
T Consensus 29 ~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 29 EQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677777777777777776665
No 40
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=55.99 E-value=13 Score=24.67 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhcCCc----hhHHhHHH
Q 033950 33 LAELKRVEQESRFLEEELEE-LDKTEN----VSTICDEL 66 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~-LE~~~~----aS~~CkEv 66 (107)
+..|+.+++-|.|||+|=.. |-|++. --+-|+|+
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL 40 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDL 40 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45788899999999987443 444432 23356664
No 41
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=55.97 E-value=18 Score=20.00 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033950 35 ELKRVEQESRFLEEELEE 52 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~ 52 (107)
|+++|.+.|+-||-+|..
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 678888889988888764
No 42
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=55.21 E-value=20 Score=24.43 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
-.-+.++|..||-||..||..+.+|-
T Consensus 56 ~keLL~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 56 AKELLEEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999988887764
No 43
>PLN03128 DNA topoisomerase 2; Provisional
Probab=54.17 E-value=24 Score=34.23 Aligned_cols=39 Identities=31% Similarity=0.307 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhc
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEA 72 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves 72 (107)
.++.+|.+|+.-+++||+.|+++.+..-=.+||..|.+.
T Consensus 1095 e~~~kL~~e~~~~~~ei~~l~~~t~~~~w~~DLd~~~~~ 1133 (1135)
T PLN03128 1095 EKVDELRAERAKKETEVEELKKTTPEDLWRKDLDAFEEA 1133 (1135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 388999999999999999999999999999999998764
No 44
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=53.76 E-value=9.6 Score=29.58 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=44.2
Q ss_pred cccchhhhhhcccCCCC-----------CCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhh
Q 033950 5 TASLGDEQMAGSRAAAG-----------GGTDTTGKHRI--LAELKRVEQESRFLEEELEELDKTENVSTICDELLKFME 71 (107)
Q Consensus 5 ~~ss~~eqv~~~~~~~~-----------~~~d~~GKhR~--~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (107)
|.++--||+..+...|+ .+=|.-|-.|+ .+.++.|.+.+..-. +.-.++..+ +-.++-=+-.|.-
T Consensus 1 ~~~~~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~~~~lk~~~d~~~-~~~d~~~~d-v~~va~~LK~ylR 78 (200)
T cd04388 1 TLPDLTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSSLTELRQILDCDA-ASVDLEQFD-VAALADALKRYLL 78 (200)
T ss_pred CcccHHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccHHHHHHHHHhcCC-CCCCccccc-HHHHHHHHHHHHH
Confidence 45566788877655555 24477788887 566666654333200 111122222 3346666677888
Q ss_pred cCCCCccccc
Q 033950 72 ARPDPLLSVT 81 (107)
Q Consensus 72 s~pDPLLP~t 81 (107)
.-||||+|..
T Consensus 79 eLPePLip~~ 88 (200)
T cd04388 79 DLPNPVIPAP 88 (200)
T ss_pred hCCCccCCHH
Confidence 8999999964
No 45
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.69 E-value=18 Score=31.33 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 28 GKHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.-+|++|+-+.||...+||.|||+.|.-
T Consensus 39 nlrrleaqrneln~kvr~lreel~~lqe 66 (404)
T KOG0728|consen 39 NLRRLEAQRNELNAKVRLLREELQLLQE 66 (404)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998864
No 46
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=52.96 E-value=18 Score=24.57 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 033950 34 AELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (107)
.-|..|++-|..||+|++.|+
T Consensus 25 lsV~El~eRIalLq~EIeRlk 45 (65)
T COG5509 25 LSVAELEERIALLQAEIERLK 45 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888776
No 47
>PRK00846 hypothetical protein; Provisional
Probab=52.90 E-value=26 Score=24.02 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.+..|.+|.++++.|-+.|++++
T Consensus 39 qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 39 ARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666666666665555
No 48
>PRK02793 phi X174 lysis protein; Provisional
Probab=52.35 E-value=26 Score=23.15 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.+.+|.+|.++++.|-+.|++++
T Consensus 34 Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 34 HEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555556666666655555544
No 49
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=52.09 E-value=17 Score=25.36 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 033950 32 ILAELKRVEQESRFLEEELEELDKTENV 59 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~a 59 (107)
..+++.+|++++.-|+.|.+-|.+.-..
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888887766554433
No 50
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=52.01 E-value=17 Score=31.66 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 33 LAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
+-+|..|++||+.||.||+.|+..
T Consensus 41 ~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 41 QQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999877
No 51
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=51.72 E-value=31 Score=30.01 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHh
Q 033950 33 LAELKRVEQESRFLEEELEELDKTENVSTICDELLKF 69 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~ 69 (107)
..++.+|++|+.-|++|++.|+.+.+..---+||.+|
T Consensus 401 ~~e~~kL~~e~~~l~~ei~~l~~~t~~~~w~~DL~~~ 437 (439)
T PHA02592 401 SDEREKLQKEAEELEKEHEYWKKTTAKKEYIKDLEEL 437 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4578899999999999999999998777777777665
No 52
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=49.61 E-value=28 Score=29.43 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=28.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 22 GGTDTTGKHRILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 22 ~~~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
+.|.-..-+-++..|..|+++++-|+.+|.+|++-
T Consensus 284 nlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 284 NLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45556666777789999999999999999999863
No 53
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=49.53 E-value=26 Score=24.07 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-----------CCchhHHhHHHHHhhhcCCCCcccc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK-----------TENVSTICDELLKFMEARPDPLLSV 80 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~-----------~~~aS~~CkEv~~~Ves~pDPLLP~ 80 (107)
|.+.|+.+++.+.-||..++.|+. ++..++.-..|...|.++.|=|-|-
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~~~ 68 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILNPD 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 567888888888888888888776 5666778888888888887766653
No 54
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=49.07 E-value=19 Score=25.73 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 033950 36 LKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~ 55 (107)
+..|+.||.-|+|+|+++|.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~ 23 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAET 23 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999988875
No 55
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=48.15 E-value=34 Score=23.31 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 30 HRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L 53 (107)
.++.++|..|..+|..+++.|+.+
T Consensus 84 ~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 84 KKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777654
No 56
>smart00338 BRLZ basic region leucin zipper.
Probab=48.12 E-value=44 Score=20.82 Aligned_cols=27 Identities=33% Similarity=0.446 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 28 GKHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.|-|..+.++.|+.++..|+.|-..|.
T Consensus 20 ~R~rKk~~~~~Le~~~~~L~~en~~L~ 46 (65)
T smart00338 20 SRERKKAEIEELERKVEQLEAENERLK 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777776666554
No 57
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=47.88 E-value=33 Score=22.87 Aligned_cols=24 Identities=42% Similarity=0.547 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 33 LAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
..+++.|+++|..|++++..++.-
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~ 92 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDE 92 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666665543
No 58
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=47.66 E-value=67 Score=21.21 Aligned_cols=40 Identities=25% Similarity=0.397 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhc
Q 033950 33 LAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEA 72 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves 72 (107)
--+|..|++.+.-|++.+++++--+|.+..=..-+..|..
T Consensus 4 g~~l~~l~~~l~~l~~~~~~~~~~d~~~~~Y~~A~klv~~ 43 (70)
T PF10975_consen 4 GQRLAELEQQLKQLEDQQEELEQRDPDSPLYSQAIKLVRQ 43 (70)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHc
Confidence 3478899999999999999999888877654444444433
No 59
>PRK00295 hypothetical protein; Provisional
Probab=47.48 E-value=36 Score=22.24 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.+.+|.+|.++++.|-+.|++++
T Consensus 30 ~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 30 EQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566667777777766666654
No 60
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=46.88 E-value=23 Score=32.51 Aligned_cols=26 Identities=42% Similarity=0.588 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
-..+|+++|+.++..||.||+.+++.
T Consensus 808 d~~~e~~rL~K~l~kl~~ei~~~~~k 833 (874)
T PRK05729 808 DVEAELARLEKELAKLEKEIERVEKK 833 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999988865
No 61
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.52 E-value=34 Score=23.87 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 23 GTDTTGKHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 23 ~~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.|+--=-|+++.+|..++-+++-|...|+.++
T Consensus 61 LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 61 LPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444457777777777777777777776654
No 62
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.41 E-value=30 Score=26.90 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
++..++..|.+++..|+.|++.|+.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777754
No 63
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.30 E-value=35 Score=24.32 Aligned_cols=26 Identities=31% Similarity=0.675 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
||+.+++.+|+..+.-|++.++.++.
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~er 87 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELER 87 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666553
No 64
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=46.04 E-value=53 Score=22.89 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhH-HhHHHHHhhhcC
Q 033950 32 ILAELKRVEQESRFLEEELEELDKTENVST-ICDELLKFMEAR 73 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~-~CkEv~~~Ves~ 73 (107)
++.++++++++|.-++..++.|+.-.+.+. -|++|-.-|.++
T Consensus 6 ~~~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~v~~r 48 (116)
T PF10552_consen 6 LMQATEEHNEKIEEVENRVDDLEENMPIDPGQQKEIQKAVKSR 48 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 456788999999999999999976666554 677776655443
No 65
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=45.88 E-value=28 Score=25.64 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTENV 59 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~a 59 (107)
++--.|++||..+.+||-.|.++.|++.+
T Consensus 25 ~~e~~Lq~~E~~l~iLEaKL~SIpgLe~v 53 (148)
T PF10152_consen 25 DMEQRLQRLEATLNILEAKLSSIPGLEDV 53 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 45567999999999999999999887655
No 66
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=45.41 E-value=50 Score=20.54 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 033950 34 AELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~L 53 (107)
.+...|..++..|+.++..|
T Consensus 40 ~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 40 SENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 67
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=45.32 E-value=69 Score=22.64 Aligned_cols=46 Identities=28% Similarity=0.400 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARP 74 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p 74 (107)
+.+|..+++.+..+|.-|+.+|..--.+-.--.-+-.+..-+.+.|
T Consensus 83 ~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~~~p 128 (139)
T PF05615_consen 83 NEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKKINSQP 128 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3567778888888888888888776655555556666666666554
No 68
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.29 E-value=34 Score=28.03 Aligned_cols=29 Identities=41% Similarity=0.535 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
...+..+++.|++|...|.+||+.||.-.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~ 73 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKER 73 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888887643
No 69
>PRK02119 hypothetical protein; Provisional
Probab=45.25 E-value=39 Score=22.42 Aligned_cols=22 Identities=9% Similarity=0.424 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 033950 33 LAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.+|.+|.++++.|-+.|++++
T Consensus 36 q~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 36 QFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555555555444443
No 70
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.20 E-value=39 Score=22.68 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
...+.++++.|..+|.-|+++++.++
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888887776
No 71
>KOG3021 consensus Predicted kinase [General function prediction only]
Probab=44.90 E-value=13 Score=31.53 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.7
Q ss_pred CCcchhHHHHHHHHHHHHHH
Q 033950 24 TDTTGKHRILAELKRVEQES 43 (107)
Q Consensus 24 ~d~~GKhR~~ael~~LeqEi 43 (107)
+.|++|||+|.+|++++.+-
T Consensus 164 ~eFf~rhRlq~Qldl~~~~~ 183 (313)
T KOG3021|consen 164 EEFFARHRLQPQLDLLEKTY 183 (313)
T ss_pred HHHHHHHhhhHHHHHHHHhh
Confidence 35899999999999998654
No 72
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=44.86 E-value=71 Score=25.96 Aligned_cols=49 Identities=14% Similarity=0.090 Sum_probs=38.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHH---------hhcCCchhH--HhHHHHHhh
Q 033950 22 GGTDTTGKHRILAELKRVEQESRFLEEELEE---------LDKTENVST--ICDELLKFM 70 (107)
Q Consensus 22 ~~~d~~GKhR~~ael~~LeqEi~fLeeEL~~---------LE~~~~aS~--~CkEv~~~V 70 (107)
..|.+.+|....++++.|..++..||..|.. +||++.|-+ +-+.|+..+
T Consensus 21 ~~~~~~~k~~y~~~l~~l~~~L~~LQ~~l~~~~~~~vlIv~eG~DaAGKG~~I~~l~~~l 80 (264)
T TIGR03709 21 DTPGFDSKEEAEALLAELVARLSDLQEKLYAEGRRSLLLVLQAMDAAGKDGTIRHVMSGV 80 (264)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCCCCchHHHHHHHHhc
Confidence 4455556999999999999999999999976 578887766 566666555
No 73
>PLN02678 seryl-tRNA synthetase
Probab=44.54 E-value=43 Score=29.15 Aligned_cols=49 Identities=24% Similarity=0.264 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccCCC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNSP 84 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g~ 84 (107)
.-+.++++.|..||.-|++++++++. --.+++..+-..|+|-.|+-...
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~------~l~~~~~~iPNi~~~~VP~G~de 122 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKA------ALDAKLKTIGNLVHDSVPVSNDE 122 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCCCCc
Confidence 34566777777777777777777663 34578888889999999976544
No 74
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=44.40 E-value=44 Score=22.13 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 30 HRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L 53 (107)
+....+++++++|+..|++|-+.|
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L 61 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERL 61 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888887775544
No 75
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=44.33 E-value=31 Score=27.99 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 33 LAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
.++|++++++|+.||.+|++.+.-.
T Consensus 54 E~AL~~a~~ri~eLe~ql~q~~~~~ 78 (247)
T PF09849_consen 54 EQALKQAQARIQELEAQLQQAQAPQ 78 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3689999999999999998855544
No 76
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=44.00 E-value=50 Score=23.16 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 033950 34 AELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~ 55 (107)
++++.|+++...|++|++.|..
T Consensus 41 ~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 41 QTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 3344555555566666666643
No 77
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=43.80 E-value=40 Score=21.95 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 033950 36 LKRVEQESRFLEEELEELD 54 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE 54 (107)
+..|+.++..++.+++.|+
T Consensus 64 ~~~L~~~~~~~~~~i~~l~ 82 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLE 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 78
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=43.58 E-value=37 Score=23.12 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 033950 36 LKRVEQESRFLEEELEEL 53 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~L 53 (107)
+..|+..+.+|+.+++.+
T Consensus 65 ~~~Le~~~e~le~~i~~l 82 (105)
T cd00632 65 RTELKERLETIELRIKRL 82 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 79
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=43.40 E-value=28 Score=27.45 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033950 30 HRILAELKRVEQESRFLEE 48 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLee 48 (107)
+++-++++.||+||+.|+-
T Consensus 155 ~~LE~kv~~LE~qvr~L~~ 173 (177)
T PF14965_consen 155 ASLEAKVRHLERQVRELNI 173 (177)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 9999999999999988874
No 80
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=43.32 E-value=72 Score=24.06 Aligned_cols=59 Identities=25% Similarity=0.287 Sum_probs=46.0
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhHHhHHHHHhhhcCC--CCccc
Q 033950 20 AGGGTDTTGKHRILAELKRVEQESRFLEEELEELDKTE-NVSTICDELLKFMEARP--DPLLS 79 (107)
Q Consensus 20 ~~~~~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~~-~aS~~CkEv~~~Ves~p--DPLLP 79 (107)
-+.+||+.++=| ...+.-+|..+..|.+.|+++.++- ..++.+..+...++... |++-+
T Consensus 51 L~~fpdl~~rL~-~Kq~~ale~vl~~L~e~l~~l~~v~~~l~~~~~~~~~l~~~~~~~~~l~~ 112 (168)
T PF15011_consen 51 LRSFPDLQERLR-RKQLEALETVLAKLRETLEELQKVRDSLSRQVRDVFQLYEQHAGLDELSL 112 (168)
T ss_pred ccccccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Confidence 457899988654 3355678999999999999998875 45779999999999655 77743
No 81
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=43.12 E-value=31 Score=25.33 Aligned_cols=19 Identities=42% Similarity=0.697 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 033950 37 KRVEQESRFLEEELEELDK 55 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~ 55 (107)
..|++-|..||+||+..++
T Consensus 76 E~l~rriq~LEeele~ae~ 94 (143)
T PF12718_consen 76 EQLNRRIQLLEEELEEAEK 94 (143)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3899999999999988764
No 82
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=43.08 E-value=44 Score=25.50 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 28 GKHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
|+.++..+|+.|+.++..|+.++..|.
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~ 147 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELK 147 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666665553
No 83
>PRK00736 hypothetical protein; Provisional
Probab=42.56 E-value=47 Score=21.73 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.+.+|.+|.++++.|-+.|++++
T Consensus 30 ~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 30 EQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566666666666666666554
No 84
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=42.53 E-value=45 Score=23.90 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCC
Q 033950 37 KRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (107)
..|++++.-|++++++|..+.. ...++++.++.+|++
T Consensus 81 ~~l~~k~~~i~~~i~~L~~~~~---~L~~~i~~~~~~~~~ 117 (131)
T cd04786 81 AALERKVADIEALEARLAQNKA---QLLVLIDLIESKPDE 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCC
Confidence 3455555555555555554442 245666677666653
No 85
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=42.43 E-value=47 Score=23.67 Aligned_cols=25 Identities=44% Similarity=0.571 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 29 KHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
|+-+-..|..|+++|.-|-+++.+|
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~L 27 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEEL 27 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666655555555544
No 86
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=42.41 E-value=21 Score=26.47 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVST 61 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~ 61 (107)
|+=.+|+|++.-|++||+++.+...+.+
T Consensus 66 AkwaKl~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 66 AKWAKLNRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888888776655443
No 87
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=42.39 E-value=60 Score=20.72 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVST 61 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~ 61 (107)
-+++.+++.++.|.+-|+.|+..|-.-+..-.
T Consensus 34 ~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~ 65 (85)
T TIGR02209 34 QKLQLEIDKLQKEWRDLQLEVAELSRHERIEK 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 45778888899999999999888876554433
No 88
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A ....
Probab=42.26 E-value=17 Score=23.04 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVST 61 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~ 61 (107)
+|-.+.|..|...|..+++.+++|.|+++...
T Consensus 29 ~~Aa~~i~~l~~~i~~~~~~~~~l~gIG~~ia 60 (68)
T PF14716_consen 29 RRAAAAIKALPYPITSGEEDLKKLPGIGKSIA 60 (68)
T ss_dssp HHHHHHHHHSSS-HHSHHHHHCTSTTTTHHHH
T ss_pred HHHHHHHHhCCHhHhhHHHHHhhCCCCCHHHH
Confidence 45566788899999999655999999997655
No 89
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=41.40 E-value=36 Score=27.44 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.-|+++.++.|.++++..+-||++|..
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999998864
No 90
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.35 E-value=75 Score=24.26 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 033950 29 KHRILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~ 52 (107)
||-+.++-.+|.||+.-|.+|+.+
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~ 99 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSR 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666543
No 91
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=41.32 E-value=36 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033950 30 HRILAELKRVEQESRFLEEELE 51 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~ 51 (107)
|-+-.+|++|++++.-||.+|+
T Consensus 86 ~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 86 DELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5566788889999998888875
No 92
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=41.08 E-value=47 Score=30.77 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (107)
.||+..=.+|++-.+.-+++.|+-|||+-.|-....||+..+-+..||
T Consensus 348 ~~R~~~~~rR~~~~l~k~~~rl~il~Gl~ia~~~iDevI~iIR~s~~~ 395 (735)
T TIGR01062 348 VFRRNTVIRRLTYRLNKVLQRLHILEGLRIAFLNIDEVIEIIREEDEP 395 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcChhh
Confidence 799999999999999999999999999999999999999999888776
No 93
>PLN02943 aminoacyl-tRNA ligase
Probab=41.04 E-value=31 Score=32.38 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 32 ILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
+.+|+++|+.|+..||.||+.+++.
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~k 911 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAAR 911 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999988888764
No 94
>PRK04406 hypothetical protein; Provisional
Probab=40.88 E-value=50 Score=22.12 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 033950 34 AELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (107)
+.|..||-.|.|+++-+++|.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN 31 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELN 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 95
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.84 E-value=56 Score=22.89 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=22.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 25 DTTGKHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 25 d~~GKhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.+.--+.+++++..+++|+.-|+.+-+.|.
T Consensus 25 G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~ 54 (105)
T PRK00888 25 GILDYWRVNDQVAAQQQTNAKLKARNDQLF 54 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888888888888888876654
No 96
>PRK04325 hypothetical protein; Provisional
Probab=40.57 E-value=51 Score=21.89 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 033950 33 LAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.+|.+|.++++.|-+.|++++
T Consensus 36 q~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 36 QQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555443
No 97
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.47 E-value=56 Score=21.60 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 033950 33 LAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (107)
-.++..|..|+.+|+.||+.+.
T Consensus 46 ~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 46 YEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3467777788888888777653
No 98
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=40.34 E-value=58 Score=32.57 Aligned_cols=39 Identities=31% Similarity=0.381 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhc
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEA 72 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves 72 (107)
-++.+|.+|+.-+++||+.|.++.+..--.+||..|.+.
T Consensus 1102 e~v~kL~~e~~~~~~e~~~L~~~t~~~lw~~DL~~~~~~ 1140 (1388)
T PTZ00108 1102 EKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEA 1140 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999999998887653
No 99
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=40.26 E-value=40 Score=29.26 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 34 AELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
.++.+|++|+.-|++|+++|+.+-
T Consensus 405 ~e~~kL~~E~~~l~~ei~~l~~~l 428 (445)
T cd00187 405 LEREKLLKELKELEAEIEDLEKIL 428 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999887
No 100
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=39.97 E-value=26 Score=29.12 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033950 30 HRILAELKRVEQESRFLEEE 49 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeE 49 (107)
+.+.--|+|||+||..||-+
T Consensus 13 R~LEesI~RLEkEIe~LE~~ 32 (278)
T PF03285_consen 13 RSLEESIHRLEKEIEALENG 32 (278)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 45677799999999999865
No 101
>PLN03237 DNA topoisomerase 2; Provisional
Probab=39.96 E-value=52 Score=33.12 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhc
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEA 72 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves 72 (107)
-++.+|.+|+.-+++||+.|.++.+..-=.++|..|.+.
T Consensus 1126 E~~~kL~~~~~~k~~el~~l~~~t~~~lW~~DLd~f~~~ 1164 (1465)
T PLN03237 1126 EKVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDALEKE 1164 (1465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999988764
No 102
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=39.94 E-value=42 Score=25.18 Aligned_cols=28 Identities=39% Similarity=0.497 Sum_probs=21.1
Q ss_pred cchhH--HHHHHHHHHHHHHHHHHHHHHHh
Q 033950 26 TTGKH--RILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 26 ~~GKh--R~~ael~~LeqEi~fLeeEL~~L 53 (107)
..||| =|-+||++++.+|+-+++|+...
T Consensus 73 nV~kRlefI~~Eikr~e~~i~d~q~e~~k~ 102 (120)
T KOG3478|consen 73 NVGKRLEFISKEIKRLENQIRDSQEEFEKQ 102 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554 36789999999999999887653
No 103
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=39.84 E-value=47 Score=24.90 Aligned_cols=27 Identities=41% Similarity=0.530 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
..+.+++..|+++|.-|+++|++.++.
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~ 145 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKA 145 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666665543
No 104
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=39.69 E-value=54 Score=22.84 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
.++...+++|+++|..+..+++.+-.-
T Consensus 11 ~~L~~~~~~le~~i~~~~~~~k~~~~~ 37 (171)
T PF03357_consen 11 RRLEKQIKRLEKKIKKLEKKAKKAIKK 37 (171)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344445555555555555555444433
No 105
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=39.50 E-value=42 Score=25.73 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEAR 73 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~ 73 (107)
++.+++..+=+...-|++.|++||...+-+.--+++++|+.+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 250 (254)
T cd03351 208 ALKRAYRILYRSGLTLEEALEELEEEAPDSPEVEELVDFIRSS 250 (254)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 4455554444555668888999988876677788899998753
No 106
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=39.33 E-value=47 Score=23.65 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 033950 34 AELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.+|+.|+..|.-|+..|+.|++
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3777888888888888887765
No 107
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=39.32 E-value=47 Score=22.15 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 28 GKHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
=-..+.++|+.|++++..++.+++-++.
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999987764
No 108
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=39.29 E-value=45 Score=22.68 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.++..++..|.+|+.-|+.+++.|..
T Consensus 28 ~~l~~~~~~l~~e~~~L~~~~~~l~~ 53 (131)
T PF05103_consen 28 DELAEELERLQRENAELKEEIEELQA 53 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777888888888887777765
No 109
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=39.17 E-value=38 Score=23.55 Aligned_cols=28 Identities=14% Similarity=0.406 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
-.++-+.+++++++.-+|+||++.+-..
T Consensus 8 ~~m~kqaq~mQ~k~~~~q~eL~~~~v~g 35 (102)
T TIGR00103 8 GELMKQAQQMQEKMKKLQEEIAQFEVTG 35 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccEEEE
Confidence 4567788999999999999999987443
No 110
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=38.84 E-value=77 Score=26.91 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=25.6
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 20 AGGGTDTTGKHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 20 ~~~~~d~~GKhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
++.++...+.++++-.+..|.|+-..|+.||..+
T Consensus 13 ~~~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~e 46 (310)
T PF09755_consen 13 GMTSSSSATREQLRKRIESLQQENRVLKRELETE 46 (310)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344445555999999999999999999888543
No 111
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=38.75 E-value=36 Score=31.82 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
-+.+|+++|+.|+.+||.|++.+++.
T Consensus 926 d~~~E~~rL~K~l~kl~~ei~~~~~k 951 (995)
T PTZ00419 926 DLKKELAKLEKKLAKLQKSLESYLKK 951 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788999999999999998887754
No 112
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=38.47 E-value=52 Score=24.51 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+++++++.=+.||.+|.++|+++..
T Consensus 98 kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 98 KLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888889888887754
No 113
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=38.33 E-value=38 Score=28.57 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCch
Q 033950 33 LAELKRVEQESRFLEEELEELDKTENV 59 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~a 59 (107)
..++++|.+|+..|++||+.|+.+-+.
T Consensus 390 ~~e~~kL~~e~~~l~~ei~~l~~~~~~ 416 (426)
T PF00521_consen 390 KEEIEKLQKEIKELEKEIEELEKILPK 416 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999987766
No 114
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=38.27 E-value=49 Score=22.80 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 033950 35 ELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~ 55 (107)
.+..|+..|.|++..++.|++
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek 88 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQR 88 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666554
No 115
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=38.17 E-value=36 Score=22.21 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033950 31 RILAELKRVEQESRFLE 47 (107)
Q Consensus 31 R~~ael~~LeqEi~fLe 47 (107)
.+.+++..|+.||.-||
T Consensus 35 ~i~~al~~Lk~EIaklE 51 (53)
T PF08898_consen 35 DIAAALEKLKAEIAKLE 51 (53)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 36678888888888776
No 116
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=38.07 E-value=86 Score=21.08 Aligned_cols=44 Identities=30% Similarity=0.367 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----hcCCchh--H-------HhHHHHHhhhcCCC
Q 033950 32 ILAELKRVEQESRFLEEELEEL----DKTENVS--T-------ICDELLKFMEARPD 75 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~L----E~~~~aS--~-------~CkEv~~~Ves~pD 75 (107)
+..=|+.|+-|+..|.-|+.+| ..++++. + -.++++.-+|.+.|
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~d 71 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKAD 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666555555554 3334433 2 34555666665544
No 117
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=37.91 E-value=63 Score=26.04 Aligned_cols=53 Identities=19% Similarity=0.097 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhHHhHHHHHhhhcCCCCccc
Q 033950 27 TGKHRILAELKRVEQESRFLEEELEELDK-TENVSTICDELLKFMEARPDPLLS 79 (107)
Q Consensus 27 ~GKhR~~ael~~LeqEi~fLeeEL~~LE~-~~~aS~~CkEv~~~Ves~pDPLLP 79 (107)
.-..++.+|-++|.+|+..|+.+++.... +..=-.-.|+++.+-+..++..++
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~~~~~i~ 119 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSSDEYKIS 119 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCceE
Confidence 34456677777777777766555554332 444445678888888777776654
No 118
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=37.69 E-value=1.1e+02 Score=20.82 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC--CchhHHhHH
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKT--ENVSTICDE 65 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~--~~aS~~CkE 65 (107)
-.+.+.++.|+.++.-|+.++.+++.- +.+....+.
T Consensus 3 ~~l~~~~~~L~~~~~~l~~~i~~~~~~l~~~~~~~v~~ 40 (83)
T PF07061_consen 3 ESLEAEIQELKEQIEQLEKEISELEAELIEDPEKIVKR 40 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHH
Confidence 356777888888888888888887764 555444433
No 119
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=37.62 E-value=57 Score=27.50 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 033950 34 AELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
.+++++++|+..|++||+.|-..
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 43 EEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 33455555555555555555443
No 120
>PHA03386 P10 fibrous body protein; Provisional
Probab=37.59 E-value=61 Score=23.38 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----cCCchhHHhHHHHHhhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD----KTENVSTICDELLKFME 71 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE----~~~~aS~~CkEv~~~Ve 71 (107)
|.++|+.++....-||.-++.|+ +++.-+.-.-++...|.
T Consensus 10 Ir~dIkavd~KVdaLQ~qV~dv~~n~~~LDa~~~qL~~l~tkV~ 53 (94)
T PHA03386 10 ILDAVQEVDTKVDALQTQLNGLEEDSQPLDGLPAQLTELDTKVS 53 (94)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH
Confidence 56788888888888888877776 35555555555555554
No 121
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.49 E-value=40 Score=31.87 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchh-HHhHHHHHhhhcCCCCc
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTENVS-TICDELLKFMEARPDPL 77 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS-~~CkEv~~~Ves~pDPL 77 (107)
|+++|+.-+..-+.-++++++.|-....+. +-||+++..=.+.+||-
T Consensus 519 ~L~~ElE~~~~~~~~~e~~~evL~~~~~~t~~l~Kq~L~~~~~q~de~ 566 (852)
T KOG4787|consen 519 DLVSELEGKIPTIDEIEQCCEVLAAVETQTGRLCKQFLKIDHAQKDER 566 (852)
T ss_pred HHHHHHHhhcCcHhHHHHHHHHHHHHhhhHHHHHHHHHHhcccCcchH
Confidence 445555555555555555555555555555 57888888888888885
No 122
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=37.47 E-value=13 Score=28.58 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTEN 58 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (107)
|-.+..++|||.-|++-|+.||.--|++..
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl~V~ek~~~ 55 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQELIVQEKLRK 55 (166)
T ss_dssp HHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 667889999999999999999944455543
No 123
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=37.38 E-value=33 Score=21.02 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEAR 73 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~ 73 (107)
.|+..-|++|++.=-.|++=++..+.--...+-|++.++.++.+
T Consensus 6 ~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~ 49 (53)
T PF02609_consen 6 ERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQK 49 (53)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777665568888888888888899999999988753
No 124
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=36.85 E-value=1.2e+02 Score=25.76 Aligned_cols=47 Identities=32% Similarity=0.473 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccCCC
Q 033950 32 ILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNSP 84 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g~ 84 (107)
+.++.+.|.++|..|+++++.+|. --.+++..+-..++|=.|+.+..
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~iPN~~~~~vP~g~~~ 117 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEA------ELEELLLRIPNLPHDSVPVGKDE 117 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCCCCC
Confidence 667777888888888888777763 34567777888888888876554
No 125
>PLN02381 valyl-tRNA synthetase
Probab=36.55 E-value=41 Score=32.12 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 32 ILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
..+|+++|+.+|.+||.||+.+++.
T Consensus 995 ~~~E~~rL~K~l~klekei~~~~~k 1019 (1066)
T PLN02381 995 AEAELEKLRNKMDEIQKQQEKLEKK 1019 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7789999999999999999888764
No 126
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=35.96 E-value=82 Score=22.14 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=19.1
Q ss_pred chhHHhHHHHHhhhcCCCCccccc
Q 033950 58 NVSTICDELLKFMEARPDPLLSVT 81 (107)
Q Consensus 58 ~aS~~CkEv~~~Ves~pDPLLP~t 81 (107)
.+..+|-=+-.|..+-||||+|..
T Consensus 55 ~~~~va~~lK~~Lr~Lp~pli~~~ 78 (174)
T smart00324 55 DVHDVAGLLKLFLRELPEPLIPYE 78 (174)
T ss_pred CHHHHHHHHHHHHHhCCCccCCHH
Confidence 445567778889999999999964
No 127
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=35.95 E-value=49 Score=21.07 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 033950 36 LKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~ 55 (107)
|..|.|++.-||.+|+-|+.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 45677888888887776653
No 128
>KOG4529 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.70 E-value=46 Score=29.27 Aligned_cols=44 Identities=20% Similarity=0.453 Sum_probs=30.4
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHH-----------------------HHHHHhhcCCchhHHhH
Q 033950 18 AAAGGGTDTTGKHRILAELKRVEQESRFLE-----------------------EELEELDKTENVSTICD 64 (107)
Q Consensus 18 ~~~~~~~d~~GKhR~~ael~~LeqEi~fLe-----------------------eEL~~LE~~~~aS~~Ck 64 (107)
.+...+.++-|++|++ .+|++|++||| +|+++||+.--++++||
T Consensus 26 ls~a~f~~le~~~kl~---r~l~~ELkfLqkv~~~~~e~hl~S~N~~hy~sii~~~e~le~vt~Vl~vfk 92 (404)
T KOG4529|consen 26 LSTAKFITLEGRRKLL---RKLSSELKFLQKVSSKDKEPHLLSVNIGHYESIIREIEQLESVTGVLRVFK 92 (404)
T ss_pred hhhhhhcCCccHHHHH---HHHHHHHHHHHHHHhccccccceeechHHHHHHHHHHHhhhhhHHHHHhhc
Confidence 4444567788888865 45667887776 46677777777777774
No 129
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=35.60 E-value=52 Score=22.39 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+...++.|+++|..|+.-++.|+
T Consensus 80 l~~~~~~l~~~i~~l~~~~~~l~ 102 (108)
T cd01107 80 LREKLAELEAEIEELQRILRLLE 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666555554
No 130
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=35.46 E-value=62 Score=26.23 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=16.2
Q ss_pred hcCCchhHHhHHHHHhhhcC--CCCccc
Q 033950 54 DKTENVSTICDELLKFMEAR--PDPLLS 79 (107)
Q Consensus 54 E~~~~aS~~CkEv~~~Ves~--pDPLLP 79 (107)
+-+..=-.--|+++.+.... .||..-
T Consensus 93 ~~l~~EN~~Lr~lL~~~~~~~~~~~~~a 120 (284)
T COG1792 93 ESLEEENKRLKELLDFKESSSDYDPIAA 120 (284)
T ss_pred HHHHHHHHHHHHHhCCccccccccceee
Confidence 33333344568999999888 455543
No 131
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=35.44 E-value=79 Score=20.69 Aligned_cols=21 Identities=5% Similarity=0.281 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033950 32 ILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~ 52 (107)
+...|+.|+.+|.-|+.+++.
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~ 28 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNA 28 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443
No 132
>PRK14626 hypothetical protein; Provisional
Probab=35.21 E-value=48 Score=23.66 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
-++-+.|.+++++.-+|+||++.+
T Consensus 9 ~mmkqaq~mQ~km~~~qeeL~~~~ 32 (110)
T PRK14626 9 ELMKQMQSIKENVEKAKEELKKEE 32 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccE
Confidence 356678999999999999999887
No 133
>PLN02320 seryl-tRNA synthetase
Probab=35.00 E-value=1.1e+02 Score=27.30 Aligned_cols=51 Identities=18% Similarity=0.155 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccCCCCC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNSPIN 86 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g~~~ 86 (107)
--+.++++.|.++|.-||++++.++. --.+++..+-..+||-.|+.+...+
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~------~l~~~~l~iPN~~h~~VP~G~de~~ 183 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTD------ELQLEAQSIPNMTHPDVPVGGEDSS 183 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCCCCCCC
Confidence 34566677777777777777766653 4567888888899999997655433
No 134
>PF04233 Phage_Mu_F: Phage Mu protein F like protein; InterPro: IPR006528 This domain is found exclusively in phage-related proteins, internally or toward the C terminus. Some of these proteins have been identified as being involved in phage head morphogenesis [, ].
Probab=34.66 E-value=45 Score=21.82 Aligned_cols=37 Identities=24% Similarity=0.549 Sum_probs=26.7
Q ss_pred chhHHhHHHHHhhhcCCCCcccccCCCCChhhHHhhcCCCCCCCcccccC
Q 033950 58 NVSTICDELLKFMEARPDPLLSVTNSPINPIWDRWFEGPQDARGCRCMIL 107 (107)
Q Consensus 58 ~aS~~CkEv~~~Ves~pDPLLP~t~g~~~~~WdrWfegp~~s~~c~cwil 107 (107)
.++..|+.+.-.+-...||+..... |..--+|||.++
T Consensus 76 rt~~~c~~l~G~~~~~~~~~~~~~~-------------pp~h~nCRC~~i 112 (112)
T PF04233_consen 76 RTRPICRALDGKIFPLDDPFWGSNY-------------PPEHPNCRCTVI 112 (112)
T ss_pred CCChHHHHHhcCcccCCCCCcCCCC-------------CCCCCCCeeeeC
Confidence 4566899998888777787754222 666688999874
No 135
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.65 E-value=61 Score=23.58 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
-+...|..|++||.-|++.|+.|..
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667888888888888888888875
No 136
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=34.27 E-value=69 Score=21.63 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+..+...++.|+++|.-|++.++.|+
T Consensus 73 ~~~l~~~~~~l~~~i~~l~~~~~~l~ 98 (102)
T cd04775 73 QAILEERLQSLNREIQRLRQQQQVLA 98 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777666654
No 137
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=34.22 E-value=1.1e+02 Score=19.87 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033950 33 LAELKRVEQESRFLEEELE 51 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~ 51 (107)
.+++..+.++|.-|+.++.
T Consensus 11 ~~~l~~~~~q~~~l~~~~~ 29 (106)
T PF01920_consen 11 NQQLQQLEQQIQQLERQLR 29 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 138
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=34.10 E-value=67 Score=22.67 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.|-+..|..|++|+.-|.+|.++|.+
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~ 70 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKK 70 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777788888888877777754
No 139
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=33.99 E-value=54 Score=27.15 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 30 HRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L 53 (107)
--.+.+++||.+||.-|++||+.+
T Consensus 90 Es~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 90 ESPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888886
No 140
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.81 E-value=85 Score=26.60 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccCCC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNSP 84 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g~ 84 (107)
.+.++++.|.++|.-|+++++.+|. --.+++..+-..++|-.|+....
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~lPN~~~~~vP~g~~~ 120 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEA------ELQDKLLSIPNIPHESVPVGKDE 120 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCCCCc
Confidence 4566777777777777777777663 34667788888889999987544
No 141
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=33.66 E-value=93 Score=20.63 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHH-HHHHHHHHHHHh
Q 033950 27 TGKHRILAELKRVEQ-ESRFLEEELEEL 53 (107)
Q Consensus 27 ~GKhR~~ael~~Leq-Ei~fLeeEL~~L 53 (107)
-|.+|++++|+.|.+ +.-.+-++|..-
T Consensus 9 ~g~~~L~~EL~~L~~~~rpe~~~~i~~A 36 (74)
T PF03449_consen 9 EGYEKLQAELEHLKNVERPEIAEEIAEA 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 477888888888776 444555555543
No 142
>PF03885 DUF327: Protein of unknown function (DUF327); InterPro: IPR005585 The proteins in this family are around 140-170 residues in length. The proteins contain many conserved residues, with the most conserved motifs found in the central and C-terminal region. The function of these proteins is unknown. ; PDB: 2P61_A 2QUP_A.
Probab=33.57 E-value=62 Score=23.64 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=23.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 033950 25 DTTGKHRILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 25 d~~GKhR~~ael~~LeqEi~fLeeEL~~ 52 (107)
|.+|++|...-|+..++++.-|-++|=.
T Consensus 96 ~~~g~~k~y~iV~~ID~kL~~L~~~ll~ 123 (147)
T PF03885_consen 96 DRRGRQKVYTIVKVIDEKLDELTDELLS 123 (147)
T ss_dssp -H-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccCCCceeeehHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999877643
No 143
>PF14882 GHL12: Hypothetical glycosyl hydrolase 12
Probab=33.50 E-value=12 Score=23.64 Aligned_cols=22 Identities=23% Similarity=0.721 Sum_probs=15.5
Q ss_pred cCCCCcccccCCCCCh-hhHHhh
Q 033950 72 ARPDPLLSVTNSPINP-IWDRWF 93 (107)
Q Consensus 72 s~pDPLLP~t~g~~~~-~WdrWf 93 (107)
-+.||.||++...... .|..|.
T Consensus 6 yk~DP~LPs~P~~~Y~~~W~~W~ 28 (53)
T PF14882_consen 6 YKEDPRLPSSPDKVYKDEWEGWY 28 (53)
T ss_pred cCCCCCCCCCHHHHHHHhhcCHH
Confidence 4679999998877533 565554
No 144
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.34 E-value=1.1e+02 Score=21.06 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHhH
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVSTICD 64 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~Ck 64 (107)
.+++.|+.+++-.+-=+++|+++++-..|=+
T Consensus 24 ~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk 54 (110)
T TIGR02338 24 TQKQQVEAQLKEAEKALEELERLPDDTPVYK 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcchhHH
Confidence 3344444444444444556667766555443
No 145
>PRK00153 hypothetical protein; Validated
Probab=32.92 E-value=54 Score=22.53 Aligned_cols=28 Identities=11% Similarity=0.400 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
-.++.+.+++++++.-+|+||+..+-..
T Consensus 6 ~~m~~qaq~~q~~~~~~q~~l~~~~~~~ 33 (104)
T PRK00153 6 QNLMKQAQQMQEKMQKMQEELAQMEVEG 33 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccEEEE
Confidence 3466788999999999999999887443
No 146
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=32.86 E-value=65 Score=28.40 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 33 LAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
+.+++.||.+|.-||+++++||..
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~ 585 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEK 585 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777766643
No 147
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.61 E-value=71 Score=26.30 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.+++|+++.+|.+||+-|+..+++..
T Consensus 59 ~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 59 LRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888887777
No 148
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.54 E-value=41 Score=30.09 Aligned_cols=19 Identities=11% Similarity=0.351 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 033950 35 ELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~L 53 (107)
+|+.|++||.-||++++.|
T Consensus 32 kie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDL 50 (489)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 7777777777777776643
No 149
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.44 E-value=57 Score=25.22 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 033950 35 ELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~ 55 (107)
++-.+|+|+..++.||+++++
T Consensus 163 d~l~ie~~L~~v~~eIe~~~~ 183 (262)
T PF14257_consen 163 DLLEIERELSRVRSEIEQLEG 183 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666655
No 150
>PRK14623 hypothetical protein; Provisional
Probab=32.37 E-value=56 Score=23.36 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (107)
++...+++++++.-+|+||+..+
T Consensus 6 ~mkqaqkmQ~km~~~Qeel~~~~ 28 (106)
T PRK14623 6 MMGKLKEAQQKVEATKKRLDTVL 28 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhccE
Confidence 55678999999999999999887
No 151
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=32.34 E-value=62 Score=27.29 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 28 GKHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
--.|+.|+...|+++..-|++||+.|.
T Consensus 215 ~q~~~~ae~seLq~r~~~l~~~L~~L~ 241 (289)
T COG4985 215 FQQHYVAEKSELQKRLAQLQTELDALR 241 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777888888888888888888775
No 152
>PRK09039 hypothetical protein; Validated
Probab=32.24 E-value=64 Score=26.74 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
.|+.++|..|..++.-||.+|..+|...
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666776666666544
No 153
>PRK09343 prefoldin subunit beta; Provisional
Probab=32.13 E-value=68 Score=22.78 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 033950 34 AELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
..++.|+..+.|++.+++.||+-
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq 93 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQ 93 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666553
No 154
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=32.09 E-value=95 Score=28.64 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC--CchhH---HhHHHHHhhhcCCCC
Q 033950 34 AELKRVEQESRFLEEELEELDKT--ENVST---ICDELLKFMEARPDP 76 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~--~~aS~---~CkEv~~~Ves~pDP 76 (107)
.++..|++|+.-|++|+++|+.+ .+.-. .-+|+.+.-..=.||
T Consensus 437 le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~kfg~~ 484 (742)
T PRK05561 437 LEEIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKFGDP 484 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46778999999999999999999 65544 477777777766666
No 155
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=31.89 E-value=55 Score=29.93 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
-...+++++|..++..||.||+.+++
T Consensus 812 ~d~~~e~~~l~k~l~~~~~~i~~~~~ 837 (861)
T TIGR00422 812 INKAKELARLQKQLDKEKKEVIRIEG 837 (861)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44788999999999999999999987
No 156
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=31.85 E-value=77 Score=20.78 Aligned_cols=18 Identities=44% Similarity=0.578 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 033950 36 LKRVEQESRFLEEELEEL 53 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~L 53 (107)
...|+++|.-|++|++++
T Consensus 41 n~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 41 NRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345777777777777654
No 157
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=31.55 E-value=1.3e+02 Score=22.86 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcC--CchhHHhHHHHHhhhcC
Q 033950 28 GKHRILAELKRVEQESRFLEEELEELDKT--ENVSTICDELLKFMEAR 73 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~LE~~--~~aS~~CkEv~~~Ves~ 73 (107)
.||=++-.|+.|+.|...=-+|.+.+|++ +.....-|-++..|++-
T Consensus 79 Nky~L~~tL~~LtkEVn~Wr~ewd~iE~~mFGD~pnSmkkMl~nvesl 126 (132)
T PF09432_consen 79 NKYSLQDTLNQLTKEVNYWRKEWDNIEMLMFGDGPNSMKKMLQNVESL 126 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 47788889999999999999999999985 56667778888888763
No 158
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=31.51 E-value=69 Score=20.89 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCc
Q 033950 33 LAELKRVEQESRFLEEELEELDKTEN 58 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (107)
+.+++++.+++.-++++|++++....
T Consensus 1 m~~~~~~~~~~~~~~~~l~~~~~~~~ 26 (93)
T PF02575_consen 1 MKQAQEMQEKMEEAQEELAEIEVTGT 26 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHhcCEEEEE
Confidence 35788999999999999998775543
No 159
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.23 E-value=1e+02 Score=20.96 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 30 HRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+-+...++.|+++|.-|+.-++.|+
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (113)
T cd01109 82 ELLEEHREELEEQIAELQETLAYLD 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666665555544
No 160
>PRK05560 DNA gyrase subunit A; Validated
Probab=30.81 E-value=1e+02 Score=28.58 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPD 75 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pD 75 (107)
.||+..=.++.+-++.-++++|+-|+|+-.|-..-++++..+.+..|
T Consensus 351 ~~r~~~~~~r~~~~l~~~~~~~~~l~g~~~~~~~~d~vI~iir~s~~ 397 (805)
T PRK05560 351 EHRKEVITRRTRFELRKAEERAHILEGLLIALDNIDEVIALIRASPT 397 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHcCCC
Confidence 78999999999999999999999999999997777888887766543
No 161
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=30.69 E-value=1.2e+02 Score=18.05 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
-||+.++..+|.+.-..|+--|++|-+
T Consensus 3 EqkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 3 EQKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 488999999999998889888888754
No 162
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.56 E-value=94 Score=21.44 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhcCCchhH------HhHHHHHhhhc
Q 033950 40 EQESRFLEEELEELDKTENVST------ICDELLKFMEA 72 (107)
Q Consensus 40 eqEi~fLeeEL~~LE~~~~aS~------~CkEv~~~Ves 72 (107)
+..++-|+....++|.++.+.. -=.+|..|+..
T Consensus 21 Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~ 59 (83)
T PF14193_consen 21 QARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRA 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3334444444445555544433 23455555543
No 163
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=30.52 E-value=85 Score=22.16 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033950 30 HRILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~ 52 (107)
++++++++.|.+|+..|+-+|+.
T Consensus 52 ~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 52 DELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888899999999999887753
No 164
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=30.52 E-value=80 Score=22.82 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 033950 34 AELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~L 53 (107)
.++..|+++|..|+.+++.+
T Consensus 112 ~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 165
>PRK14629 hypothetical protein; Provisional
Probab=30.50 E-value=64 Score=22.88 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
++-..+++++++.-+|+||++.+=
T Consensus 8 ~mkqaq~mQ~km~~~Q~eL~~~~v 31 (99)
T PRK14629 8 FLKNMSSFKDNIDNIKKEISQIVV 31 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhccEE
Confidence 677889999999999999998763
No 166
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.49 E-value=93 Score=22.99 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.+-..|+.|+++.+.|+++|++|.
T Consensus 81 ~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 81 TLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777764
No 167
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=30.48 E-value=1e+02 Score=21.70 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+-+...++.|+++|..|+.-++.|+.
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02047 82 ALLDEHISHVRARIIKLQALIEQLVD 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888777777666664
No 168
>PRK14127 cell division protein GpsB; Provisional
Probab=30.48 E-value=88 Score=22.59 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+...+..|.+|+.-|++|+..|+.
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~ 58 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKA 58 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888888877764
No 169
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=30.32 E-value=92 Score=28.72 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPD 75 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pD 75 (107)
.||+..=.+|.+-++.-++++|+-|||+-.|-..-.+++..+-+..|
T Consensus 361 ~~R~~~~~rr~~~~l~k~~~r~~~l~g~~~~~~~id~vI~iir~s~~ 407 (742)
T PRK05561 361 DHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRIIRESDE 407 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCcc
Confidence 79999999999999999999999999998888888888887776655
No 170
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=30.18 E-value=70 Score=24.04 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 033950 29 KHRILAELKRVEQESRFLEEELE 51 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~ 51 (107)
--|+-+.++++||||..|--|+.
T Consensus 88 lfrlYl~IdkiereITelvreIA 110 (121)
T COG2456 88 LFRLYLDIDKIEREITELVREIA 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999998887764
No 171
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=30.10 E-value=65 Score=22.42 Aligned_cols=20 Identities=40% Similarity=0.589 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033950 30 HRILAELKRVEQESRFLEEE 49 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeE 49 (107)
.|+..++++|-||+..+|.|
T Consensus 89 s~le~~i~~L~qeiAl~e~~ 108 (115)
T PF10066_consen 89 SRLEEKIKRLAQEIALLEAE 108 (115)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45566677777777776543
No 172
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.86 E-value=1.1e+02 Score=20.01 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
|+-..|..+..|+.-|.++++.++.
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666653
No 173
>PRK00587 hypothetical protein; Provisional
Probab=29.70 E-value=67 Score=22.70 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (107)
++...+.+++++.-+|+||...+
T Consensus 6 lmkqaqkmQ~km~~~QeeL~~~~ 28 (99)
T PRK00587 6 LAQQLKKMQNTMEKKQKEFEEKE 28 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhccE
Confidence 56678899999999999999887
No 174
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=29.58 E-value=66 Score=27.52 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+|-+|+.|+++|.-++.||+.+.
T Consensus 180 Lqkk~~~l~~~l~~~~~eL~~~~ 202 (323)
T PF08537_consen 180 LQKKIDELEERLNDLEKELEITK 202 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678889999999998887754
No 175
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.45 E-value=67 Score=23.37 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
|.+.+++.+++.+.-|++||.+++.
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~l~~ 102 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQLQE 102 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555443
No 176
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.42 E-value=96 Score=20.99 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+..+...++.|+++|..|+.-.+.|+
T Consensus 73 ~~~l~~~~~~l~~~i~~l~~~~~~l~ 98 (102)
T cd04789 73 RSLLLERLSSLAEQIARKQQARDLLA 98 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777766555544
No 177
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=29.29 E-value=86 Score=24.89 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
.+.++.+++.|+++|..|+++|+.....
T Consensus 39 ye~~l~e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 39 YEQLLDENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3567789999999999999999988876
No 178
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=29.27 E-value=1.1e+02 Score=22.11 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+..+...+..|+++|..|+...+.|+.
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T PRK10227 81 KRRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666778888888888877766653
No 179
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=29.20 E-value=95 Score=24.97 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENV 59 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~a 59 (107)
|..+..+++.++++..-.+..|++.|++++.
T Consensus 180 r~~L~~~~~~~e~~~~~a~~~L~~Ye~lg~~ 210 (238)
T PF14735_consen 180 RDHLEEAIEELEQELQKARQRLESYEGLGPE 210 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHh
Confidence 3457789999999999999999999999986
No 180
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=29.09 E-value=98 Score=21.68 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
++++|+|....+...-|+.+|+.|-.
T Consensus 25 k~L~~~v~~v~~~f~~L~~~l~~l~~ 50 (101)
T PF07303_consen 25 KELHAEVDAVSRRFQELDSELKRLPP 50 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 57889999999999999999988765
No 181
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.04 E-value=96 Score=23.99 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 033950 35 ELKRVEQESRF 45 (107)
Q Consensus 35 el~~LeqEi~f 45 (107)
++..|++|+..
T Consensus 57 e~~~l~~e~e~ 67 (251)
T PF11932_consen 57 EYRQLEREIEN 67 (251)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 182
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=29.00 E-value=93 Score=21.72 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+...++.|+++|..|++-++.|+.
T Consensus 85 l~~~~~~l~~~~~~l~~~~~~L~~ 108 (118)
T cd04776 85 IEKRRAELEQQRRDIDAALAELDA 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666553
No 183
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=28.95 E-value=1.2e+02 Score=20.64 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhc-----CCchhHHhHHHHHhhhcCCCCcccc
Q 033950 43 SRFLEEELEELDK-----TENVSTICDELLKFMEARPDPLLSV 80 (107)
Q Consensus 43 i~fLeeEL~~LE~-----~~~aS~~CkEv~~~Ves~pDPLLP~ 80 (107)
+..|.+.++.-.. ...+..+|.=+-.|+..-|+||+|.
T Consensus 31 ~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~ 73 (169)
T cd00159 31 IEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPF 73 (169)
T ss_pred HHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCH
Confidence 3344444544443 3346668888999999999999997
No 184
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=28.76 E-value=95 Score=28.61 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (107)
.||+..=.+|.+-++.-+++.++-|||+-.|-..+.+++..+-+..|.
T Consensus 348 ~~R~~~~~rr~~~~l~k~~~r~~il~g~~~~~~~id~~i~iir~~~~~ 395 (738)
T TIGR01061 348 KHCHEVIINRSKYELEKASKRLEIVEGLIKAISIIDEIIKLIRSSEDK 395 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHcCCCH
Confidence 789888889999999999999999999999888999999887665543
No 185
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=28.74 E-value=1e+02 Score=18.51 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
-+...++.++++|.-|+.-.+.|+
T Consensus 40 ~l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 40 LLEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666665444443
No 186
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=28.53 E-value=69 Score=30.30 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 033950 31 RILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~L 53 (107)
|.||.++ |+.+|+-|||||+.+
T Consensus 348 ~kqak~K-lee~i~elEEElk~~ 369 (832)
T KOG2077|consen 348 VKQAKLK-LEEKIRELEEELKKA 369 (832)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Confidence 4455553 677888888888765
No 187
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=28.46 E-value=96 Score=24.13 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 033950 28 GKHRILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~ 52 (107)
=|-.+..||.++|.||..|..-|-.
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL~a 54 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVLAA 54 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888999999999888765433
No 188
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.41 E-value=1.5e+02 Score=21.92 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHH
Q 033950 32 ILAELKRVEQESRFLEEELEELDKTENVSTICDE 65 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkE 65 (107)
+....+.|+.+++-.+.=|++||+++.-..+-|-
T Consensus 25 ~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~ 58 (119)
T COG1382 25 VILQKQQLEAQLKEIEKALEELEKLDEDAPVYKK 58 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3445566777777777778888888776644443
No 189
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=28.24 E-value=89 Score=22.07 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-CchhHHhHHHH
Q 033950 32 ILAELKRVEQESRFLEEELEELDKT-ENVSTICDELL 67 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~-~~aS~~CkEv~ 67 (107)
.+++++.|.++..+|+.|++.|+.= +-.-.-|+.-+
T Consensus 62 ~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l 98 (117)
T COG2919 62 QQAELEKLSARNTALEAEIKDLKDGRDYIEERARSEL 98 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 3567777888888888888888765 33333444333
No 190
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=28.21 E-value=76 Score=24.66 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchh
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVS 60 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS 60 (107)
..+..|.+|...|++|+.+|+.....-
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444333
No 191
>PRK14622 hypothetical protein; Provisional
Probab=28.13 E-value=82 Score=22.19 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 30 HRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
..++.+.|++++++.-+|+||+..+
T Consensus 4 ~~lmkqaq~mQ~~m~~~q~el~~~~ 28 (103)
T PRK14622 4 QYLMRQAKKLEKAMADAKEKLAEIA 28 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccE
Confidence 4567788999999999999999875
No 192
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=28.03 E-value=11 Score=26.30 Aligned_cols=42 Identities=31% Similarity=0.242 Sum_probs=22.9
Q ss_pred cchhhhhhcccCCCCCCCCcchhHHHHH-----HHHHHHHHHHHHHHHHHHhh
Q 033950 7 SLGDEQMAGSRAAAGGGTDTTGKHRILA-----ELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 7 ss~~eqv~~~~~~~~~~~d~~GKhR~~a-----el~~LeqEi~fLeeEL~~LE 54 (107)
+.-|++|+...+.+ ..|.|++.. .+..++++|.||+ |++.|=
T Consensus 6 ~~LM~dvvaL~eq~-----Wi~~~~i~~l~~~~~~~d~e~qI~Flr-el~~l~ 52 (87)
T PF09059_consen 6 SELMEDVVALVEQR-----WIGPSQIERLAEALGLPDIEQQILFLR-ELKELF 52 (87)
T ss_dssp HHHHHHHHHHHHST-----T--HHHHHHHHHCT--SSHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHhcCc-----CcCHHHHHHHHHHcCCCCHHHHHHHHH-HHHHHH
Confidence 34455555433332 455666554 4566799999999 455543
No 193
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=28.00 E-value=94 Score=24.27 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=20.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 25 DTTGKHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 25 d~~GKhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
+.-..+..+..|..||.-|.-||++|+.+
T Consensus 189 ~~e~~~~~~~~Le~LE~~Ie~lE~glE~v 217 (231)
T PF03087_consen 189 DEEEVQNAQKRLEELEECIEELEEGLECV 217 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777788888888888877765
No 194
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.95 E-value=1.1e+02 Score=20.97 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.-++..++.|+++|..|+..++.|+.
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (116)
T cd04769 82 QALEDKKQEIRAQITELQQLLARLDA 107 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777654
No 195
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.94 E-value=95 Score=21.22 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 30 HRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.++..++.|+++|..|+.-++.|+
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (123)
T cd04770 82 ALLEEKLAEVEAKIAELQALRAELA 106 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554444443
No 196
>PRK14627 hypothetical protein; Provisional
Probab=27.89 E-value=75 Score=22.23 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (107)
++...|.+++++.-+|+||+..+
T Consensus 6 ~mkqaq~mQ~km~~~Q~el~~~~ 28 (100)
T PRK14627 6 LMQMAQQMQRQMQKVQEELAATI 28 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhccE
Confidence 45678889999999999999876
No 197
>PRK14621 hypothetical protein; Provisional
Probab=27.84 E-value=76 Score=22.77 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 30 HRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.-++-+.+++++++.-+|+||+..+
T Consensus 7 ~~mmkqaq~mQ~km~~~Q~eL~~~~ 31 (111)
T PRK14621 7 GDMMKQIQQAGEKMQDVQKQLEKLV 31 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccE
Confidence 3466788999999999999998865
No 198
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=27.75 E-value=1.1e+02 Score=16.60 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 033950 35 ELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE 54 (107)
+-+.||-+..-|++|.+-+|
T Consensus 2 akk~lEa~~qkLe~e~q~~e 21 (21)
T PF02370_consen 2 AKKQLEADHQKLEAEKQISE 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcC
Confidence 34566777777777766543
No 199
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=27.58 E-value=84 Score=27.87 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
-||+.+.|+...+||.-|++||+.|-
T Consensus 17 ~~~l~~~l~~~~~~~~~~~~~~~~~~ 42 (512)
T TIGR03689 17 NAKLAELLKAARDKLSKLKSQLEQLA 42 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999984
No 200
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=27.56 E-value=1.2e+02 Score=28.17 Aligned_cols=47 Identities=23% Similarity=0.174 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPD 75 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pD 75 (107)
.||+..=.++.+-++.-++++|+-|+|+-.|-..-++++..+.+..|
T Consensus 348 ~~r~~~~~~r~~~~l~~~~~~~~~~~g~~~~~~~~d~vi~~ir~~~~ 394 (800)
T TIGR01063 348 EHRKDVITRRTIFELRKAEERAHILEGLLIALDNIDEVIALIRASQN 394 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCC
Confidence 79999999999999999999999999999988888888887765544
No 201
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=27.55 E-value=1.1e+02 Score=20.37 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
..+.|.++...|.-||..|..||.
T Consensus 55 q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 55 QKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777888888888888874
No 202
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.35 E-value=72 Score=22.34 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033950 36 LKRVEQESRFLEEELEE 52 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~ 52 (107)
+..|+.+++.++++.++
T Consensus 82 ~~~l~~~~~~~~~~~~~ 98 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEK 98 (118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 203
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=27.22 E-value=97 Score=26.45 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhh
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVSTICDELLKFME 71 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (107)
.+++.|+++|.-|++||..++.--.+-.....+++...
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47778888888888888888776666555555555544
No 204
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.16 E-value=87 Score=22.60 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTEN 58 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (107)
-+....+++++++.-+|+||.+.|=...
T Consensus 9 ~l~kqaqqmQ~~~~~~Q~ela~~ev~g~ 36 (105)
T COG0718 9 KLMKQAQQMQKKMQKMQEELAQKEVTGK 36 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcEEeee
Confidence 3567889999999999999998874433
No 205
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=27.05 E-value=1.3e+02 Score=19.71 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=20.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 033950 24 TDTTGKHRILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 24 ~d~~GKhR~~ael~~LeqEi~fLeeEL~~ 52 (107)
=+.++-.=+...|..|+.||.-++.++..
T Consensus 18 Ls~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred chhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777777654
No 206
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=26.90 E-value=1.1e+02 Score=23.28 Aligned_cols=30 Identities=40% Similarity=0.440 Sum_probs=22.0
Q ss_pred hhHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Q 033950 28 GKHRILAE--LKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 28 GKhR~~ae--l~~LeqEi~fLeeEL~~LE~~~ 57 (107)
-|.+++++ ...++++|..|+.|+++|+.-.
T Consensus 112 ~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~ 143 (189)
T PF10211_consen 112 MRKALQAEQGKQELEEEIEELEEEKEELEKQV 143 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 5788889999999998887643
No 207
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=26.82 E-value=1.2e+02 Score=21.62 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 033950 38 RVEQESRFLEEELEELDK 55 (107)
Q Consensus 38 ~LeqEi~fLeeEL~~LE~ 55 (107)
+|++||.+-+++|++||.
T Consensus 80 kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 80 KLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566668888888874
No 208
>smart00150 SPEC Spectrin repeats.
Probab=26.80 E-value=1.4e+02 Score=18.04 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=28.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 23 GTDTTGKHRILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 23 ~~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
+.|.-+-..++.+.+.+..+|.-.+..++.+..+
T Consensus 27 ~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~ 60 (101)
T smart00150 27 GKDLESVEALLKKHEALEAELEAHEERVEALNEL 60 (101)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3688888888889999999998888888877654
No 209
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=26.79 E-value=1.1e+02 Score=25.20 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVST 61 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~ 61 (107)
.++..+++.+++++..|+++|+.+...+..-.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (389)
T PRK03992 25 RDLEAENEKLERELERLKSELEKLKSPPLIVA 56 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Confidence 45667778888888888888888877654444
No 210
>PRK11637 AmiB activator; Provisional
Probab=26.75 E-value=98 Score=25.77 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 033950 33 LAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.+|+.++++|.-|+++|+.++
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555444444
No 211
>PRK09039 hypothetical protein; Validated
Probab=26.50 E-value=87 Score=25.95 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 033950 32 ILAELKRVEQES 43 (107)
Q Consensus 32 ~~ael~~LeqEi 43 (107)
++++|.-++++.
T Consensus 156 le~~L~~ae~~~ 167 (343)
T PRK09039 156 LEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 212
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=26.38 E-value=1.4e+02 Score=22.85 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=17.9
Q ss_pred hhHHhHHHHHhhhcCCCCccccc
Q 033950 59 VSTICDELLKFMEARPDPLLSVT 81 (107)
Q Consensus 59 aS~~CkEv~~~Ves~pDPLLP~t 81 (107)
+-.+|-=+-.|.-.-|+||+|..
T Consensus 61 ~h~va~lLK~flReLPePLi~~~ 83 (208)
T cd04392 61 AHDCATVLKGFLGELPEPLLTHA 83 (208)
T ss_pred HHHHHHHHHHHHHhCCCccCCHH
Confidence 44577777788888999999963
No 213
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=26.38 E-value=1.4e+02 Score=20.29 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033950 31 RILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~ 52 (107)
++.+.++.++.+-.-|.++|..
T Consensus 84 ~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 84 QLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 214
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=26.36 E-value=90 Score=23.43 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 033950 33 LAELKRVEQESRFLEEELEELDKTENVST 61 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~ 61 (107)
..-++..+.+|.-|+.||+.++.+-|...
T Consensus 102 ~~~~~~s~~~i~~l~keL~~i~~~~P~e~ 130 (161)
T PF05873_consen 102 KEFEAESKKRIAELEKELANIESARPFEQ 130 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHh
Confidence 34456677889999999999999988765
No 215
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=26.23 E-value=1.3e+02 Score=20.10 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 033950 36 LKRVEQESRFLEEELEELD 54 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE 54 (107)
.+.|.+....|++++++|+
T Consensus 75 ~~~l~~~~~~l~~~i~~l~ 93 (103)
T cd01106 75 LEALREQKELLEEKKERLD 93 (103)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555553
No 216
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=26.13 E-value=89 Score=24.99 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhh
Q 033950 37 KRVEQESRFLEEELEELDKTENVSTICDELLKFM 70 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~V 70 (107)
..++.||..|++|+.+|--+-..-..-.+|++-+
T Consensus 135 e~~~eEi~~lk~en~~L~elae~~~~la~~ie~l 168 (200)
T PF07412_consen 135 EQKDEEIAKLKEENEELKELAEHVQYLAEVIERL 168 (200)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445544444444433333444444433
No 217
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.11 E-value=1.1e+02 Score=25.02 Aligned_cols=24 Identities=46% Similarity=0.735 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
++.++|..|++|-.-|..||.+|+
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444444444443
No 218
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.11 E-value=99 Score=26.99 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHh
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVSTIC 63 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~C 63 (107)
.-+..+|++|..||.-.-+||+.++-++++-+.=
T Consensus 27 ~qL~deIq~Lk~Ei~ev~~eid~~~~~e~skt~q 60 (395)
T KOG0930|consen 27 QELLDEIQRLKDEIAEVMEEIDNLESTEESKTKQ 60 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccchhhHH
Confidence 3456789999999999999999999999966543
No 219
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=26.04 E-value=82 Score=23.64 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=20.6
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhcCC
Q 033950 32 ILAEL-KRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 32 ~~ael-~~LeqEi~fLeeEL~~LE~~~ 57 (107)
.|.|+ .+|+++|.+|++.++.+.|..
T Consensus 12 tQ~E~N~QLekqi~~l~~kiek~r~n~ 38 (129)
T PF15372_consen 12 TQLELNDQLEKQIIILREKIEKIRGNP 38 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444 479999999999999998843
No 220
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=26.03 E-value=1.6e+02 Score=17.75 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=26.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 23 GTDTTGKHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 23 ~~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.|.-.-..++.+++.++++|.-.+..++.|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~ 61 (105)
T PF00435_consen 30 GSDLEELEEQLKKHKELQEEIESRQERLESLN 61 (105)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 66778888888888888888888888887765
No 221
>PRK14625 hypothetical protein; Provisional
Probab=25.99 E-value=83 Score=22.59 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
-++.+.|.+++++.-+|+||+..+
T Consensus 6 ~mmkqaq~mQ~km~~~Q~el~~~~ 29 (109)
T PRK14625 6 GLMKQAQAMQQKLADAQARLAETT 29 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccE
Confidence 356678889999999999999877
No 222
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=25.86 E-value=1.4e+02 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
..++..++.|+++|..|+.-++.|+.
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02044 82 ARTLEKVAEIERKISELQSMRDQLEA 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777776666654
No 223
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=25.73 E-value=1.5e+02 Score=20.65 Aligned_cols=25 Identities=20% Similarity=0.526 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 30 HRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.+.....+|++++..|+.+++.++
T Consensus 4 ~~Lk~~~~~L~~~~~~le~~i~~~~ 28 (171)
T PF03357_consen 4 LKLKKTIRRLEKQIKRLEKKIKKLE 28 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888775
No 224
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=25.32 E-value=1.2e+02 Score=24.30 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 28 GKHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
++++++|+-.+||+|.+.|..++..|
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~L 107 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETL 107 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888777777666554
No 225
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=25.31 E-value=1.2e+02 Score=24.58 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTEN 58 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (107)
++-+..+.+|.+|=.+|+.+|++|++...
T Consensus 115 ~~~~~~~e~l~~e~~~l~~rl~ql~~~~s 143 (232)
T KOG2483|consen 115 ATQQQDIEDLSRENRKLKARLEQLSLPQS 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 45567889999999999999999997763
No 226
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=25.25 E-value=1.3e+02 Score=18.69 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033950 30 HRILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~ 52 (107)
+|..-||..|+.-++-|+.|++.
T Consensus 18 ~~r~dEV~~L~~NL~EL~~e~~~ 40 (42)
T PF11464_consen 18 ARRFDEVATLEENLRELQDEIDE 40 (42)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHh
Confidence 45566888888888888888764
No 227
>PF08618 Opi1: Transcription factor Opi1; InterPro: IPR013927 Opi1 is a leucine zipper containing yeast transcription factor that negatively regulates phospholipid biosynthesis []. It represses the expression of several UAS(INO) cis acting element containing genes and its activity is mediated by phosphorylations catalysed by protein kinase A, protein kinase C and casein kinase II [].
Probab=25.09 E-value=1.5e+02 Score=26.20 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
++.+-.+|++.|.||+.-|++.|.
T Consensus 240 Lr~AN~~i~~~i~~Lq~~l~e~e~ 263 (427)
T PF08618_consen 240 LRLANAHIDSKINFLQDVLEEYER 263 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667899999999999999994
No 228
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.07 E-value=1.2e+02 Score=22.44 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=23.2
Q ss_pred chhHHhHHHHHhhhcCCCCcccccCCCCChhhHHhhc
Q 033950 58 NVSTICDELLKFMEARPDPLLSVTNSPINPIWDRWFE 94 (107)
Q Consensus 58 ~aS~~CkEv~~~Ves~pDPLLP~t~g~~~~~WdrWfe 94 (107)
.+-.+|-=+-.|...-|+||+|.. .+++|++
T Consensus 67 ~~~~va~~lK~fLreLPePlip~~------~~~~~~~ 97 (185)
T cd04373 67 TVNAVAGALKSFFSELPDPLIPYS------MHLELVE 97 (185)
T ss_pred cHHHHHHHHHHHHhcCCchhccHH------HHHHHHH
Confidence 355688888899999999999954 4555544
No 229
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=25.02 E-value=1e+02 Score=21.46 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=21.2
Q ss_pred CCCCcchh-HHHHHHHHHHHHHHHHHHHHHH
Q 033950 22 GGTDTTGK-HRILAELKRVEQESRFLEEELE 51 (107)
Q Consensus 22 ~~~d~~GK-hR~~ael~~LeqEi~fLeeEL~ 51 (107)
.+.|..|. -+-+-+|+-|++-|.-||=||-
T Consensus 60 ~~~di~~eV~kTh~aIq~LdKtIS~LEMELA 90 (95)
T PF13334_consen 60 DQRDIMGEVSKTHEAIQSLDKTISSLEMELA 90 (95)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555532 4555688899999999998874
No 230
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=24.98 E-value=1.2e+02 Score=20.55 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhcCCchhH-HhHHHHHhhhc
Q 033950 39 VEQESRFLEEELEELDKTENVST-ICDELLKFMEA 72 (107)
Q Consensus 39 LeqEi~fLeeEL~~LE~~~~aS~-~CkEv~~~Ves 72 (107)
|++++.-|.+||.+...+++..+ .-+++.+-++.
T Consensus 2 L~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~ 36 (85)
T PF14357_consen 2 LQELLEKLHQELEQNPPLDEETRAELSSLDDDIEA 36 (85)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 56777778888888888887776 55666555554
No 231
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=24.96 E-value=82 Score=27.20 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCch
Q 033950 34 AELKRVEQESRFLEEELEELDKTENV 59 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~a 59 (107)
.++.+|++|+.-|++|+++|+++-+.
T Consensus 415 ~e~~kL~~e~~~l~~ei~~l~~~l~~ 440 (445)
T smart00434 415 LEVEKLEKELKELEKEIEDLEKILAS 440 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36788999999999999999887553
No 232
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=24.88 E-value=1.1e+02 Score=22.78 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 033950 32 ILAELKRVEQESRFLEEELEELDKTENVSTI 62 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~ 62 (107)
+.+++..|+++|+-|++-+++-|---.+||+
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa 36 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSAASRA 36 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 3457888999999999999988887777773
No 233
>PHA03395 p10 fibrous body protein; Provisional
Probab=24.88 E-value=1.5e+02 Score=21.03 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----------cCCchhHHhHHHHHhhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELD-----------KTENVSTICDELLKFMEA 72 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE-----------~~~~aS~~CkEv~~~Ves 72 (107)
|.++|+.+...+..||..++.+. +++.-+...-.+.+.|..
T Consensus 9 Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~ 60 (87)
T PHA03395 9 IRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDN 60 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56778888888888886666665 334444444555555544
No 234
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=24.84 E-value=90 Score=22.01 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 033950 35 ELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~L 53 (107)
-|..|+++|..++.||..+
T Consensus 79 ~i~~L~~ql~~~~~el~~~ 97 (101)
T PF03195_consen 79 IISQLQQQLQQLQAELALV 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888765
No 235
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.64 E-value=1.4e+02 Score=20.91 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033950 34 AELKRVEQESRFLEEELEE 52 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~ 52 (107)
.++++|.+.++-+++|++.
T Consensus 94 ~~~~~l~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 94 QEIEKLKQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 236
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.64 E-value=95 Score=21.04 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 32 ILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
-+..|+.|-+.++-|++-++.||.+
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T TIGR02976 40 DQALLQELYAKADRLEERIDTLERI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888888888865
No 237
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=24.57 E-value=60 Score=21.75 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033950 36 LKRVEQESRFLEEELEE 52 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~ 52 (107)
|.+|+|||.++=.|+++
T Consensus 1 lE~ldQ~iTl~LQeID~ 17 (66)
T PF08655_consen 1 LEQLDQEITLLLQEIDS 17 (66)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 46899999998777764
No 238
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=24.55 E-value=25 Score=26.40 Aligned_cols=15 Identities=47% Similarity=0.550 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhh
Q 033950 40 EQESRFLEEELEELD 54 (107)
Q Consensus 40 eqEi~fLeeEL~~LE 54 (107)
+++.--|++|.+.|+
T Consensus 56 e~~~~~Lpee~~~Lq 70 (181)
T PF09311_consen 56 EQEVAQLPEEVKHLQ 70 (181)
T ss_dssp ---------------
T ss_pred hhhhhcCcchHHHHH
Confidence 444444444444444
No 239
>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove. MH1 is present in Smad proteins, an important family of proteins involved in TGF-beta signalling and frequent targets of tumorigenic mutations. Also known as Domain A in dwarfin family proteins.
Probab=24.55 E-value=40 Score=24.75 Aligned_cols=7 Identities=43% Similarity=1.559 Sum_probs=6.1
Q ss_pred CChhhHHh
Q 033950 85 INPIWDRW 92 (107)
Q Consensus 85 ~~~~WdrW 92 (107)
.|+.| ||
T Consensus 77 ~crlw-RW 83 (121)
T cd00049 77 YCRVW-RW 83 (121)
T ss_pred EEeee-ec
Confidence 68899 99
No 240
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.51 E-value=1.3e+02 Score=26.63 Aligned_cols=26 Identities=46% Similarity=0.583 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.+++.+++.+++++..+++||+++-.
T Consensus 218 ~~l~~~l~~l~~~~~~~~~~l~~~~~ 243 (646)
T PRK05771 218 REIKEELEEIEKERESLLEELKELAK 243 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777776543
No 241
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=24.43 E-value=93 Score=26.85 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 033950 34 AELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
..|..|++||.-|+.||+.|+--
T Consensus 144 ~Ri~~Le~e~~~i~~EI~~l~aG 166 (478)
T PF11855_consen 144 RRIAELEREIAEIDAEIDRLEAG 166 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 35678889999999999888743
No 242
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=24.38 E-value=79 Score=23.02 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 033950 38 RVEQESRFLEEELEELDK 55 (107)
Q Consensus 38 ~LeqEi~fLeeEL~~LE~ 55 (107)
.+..||.-||++|+++|.
T Consensus 7 ~I~~eI~kLqe~lk~~e~ 24 (98)
T PRK13848 7 KIREEIAKLQEQLKQAET 24 (98)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355677777777777764
No 243
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=24.36 E-value=1.6e+02 Score=20.14 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhh
Q 033950 41 QESRFLEEELEELD 54 (107)
Q Consensus 41 qEi~fLeeEL~~LE 54 (107)
.||..|+.|+..|.
T Consensus 78 d~i~~Lr~el~~L~ 91 (101)
T PRK10265 78 DEIAHLKQENRLLR 91 (101)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 244
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.08 E-value=1.1e+02 Score=23.80 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
++.-+.++|++|+.-|+.+++.|+.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~ 125 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEK 125 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777764
No 245
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=23.97 E-value=1.1e+02 Score=26.41 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=23.5
Q ss_pred CcchhHH--HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 25 DTTGKHR--ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 25 d~~GKhR--~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+++-=|+ ...+|++|.+||..|++|+..+-.
T Consensus 72 ~mYrLH~y~~~~~l~~l~~~i~~L~~ei~~~s~ 104 (499)
T PF05679_consen 72 YMYRLHRYFLSLELQKLRQEIAQLQREIQNMSN 104 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444343 456889999999999999998755
No 246
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=23.95 E-value=1.1e+02 Score=26.57 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCch
Q 033950 35 ELKRVEQESRFLEEELEELDKTENV 59 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~~~a 59 (107)
+.+.+++++.+|+.+|++|+.+++-
T Consensus 183 ~~~~~~~eld~L~~ql~ELe~~~l~ 207 (563)
T TIGR00634 183 KEQELAQRLDFLQFQLEELEEADLQ 207 (563)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCcC
Confidence 3456778888888888888888764
No 247
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=23.83 E-value=2.5e+02 Score=24.49 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=22.0
Q ss_pred HHHHhhhcCCCCcccccCCC----CChhhHHhhcCC
Q 033950 65 ELLKFMEARPDPLLSVTNSP----INPIWDRWFEGP 96 (107)
Q Consensus 65 Ev~~~Ves~pDPLLP~t~g~----~~~~WdrWfegp 96 (107)
.+-..+++.||+++=....- .|+.+.++|.-+
T Consensus 156 ~l~~il~~~~~~i~~~D~~g~i~~~N~a~~~l~G~~ 191 (779)
T PRK11091 156 LLRSFLDASPDLVYYRNEDGEFSGCNRAMELLTGKS 191 (779)
T ss_pred HHHHHHhcCcceEEEECCCCcEEeEcHHHHHHhCcC
Confidence 35567888999987544332 788888887643
No 248
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=23.78 E-value=1e+02 Score=27.12 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 033950 34 AELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (107)
.++..|+++++-|++|+++++
T Consensus 100 ~~i~~l~~~~~~L~~~~~~l~ 120 (646)
T PRK05771 100 KEIKELEEEISELENEIKELE 120 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 249
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=23.61 E-value=1.3e+02 Score=21.78 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 033950 38 RVEQESRFLEEELE 51 (107)
Q Consensus 38 ~LeqEi~fLeeEL~ 51 (107)
+|.+.|..||+||+
T Consensus 58 QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 58 QLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444455444
No 250
>PF13864 Enkurin: Calmodulin-binding
Probab=23.57 E-value=1.6e+02 Score=19.93 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=22.2
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 19 AAGGGTDTTGKHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 19 ~~~~~~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+-|-..|+.++.|.. ..||+++.-||+-++-|++
T Consensus 62 ~lp~~~DT~~~~~rK---~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 62 KLPFSIDTLRKKRRK---EELEKELKQLEKDIKKLSR 95 (98)
T ss_pred hCCcccCCHHHHHHH---HHHHHHHHHHHHHHHHHcc
Confidence 345557888877743 4567777777777766654
No 251
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=23.48 E-value=71 Score=21.59 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 033950 34 AELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (107)
..+..|++++..|++++++|+
T Consensus 76 ~~~~ll~~~~~~l~~~i~~L~ 96 (99)
T cd04772 76 SALALVDAAHALLQRYRQQLD 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777775
No 252
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=23.41 E-value=45 Score=26.99 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=17.3
Q ss_pred HHHhhhcCCCCcccccCCC
Q 033950 66 LLKFMEARPDPLLSVTNSP 84 (107)
Q Consensus 66 v~~~Ves~pDPLLP~t~g~ 84 (107)
++.||+..-||+.|+|.|-
T Consensus 28 llrFv~~~fd~~~~~tIGv 46 (209)
T KOG0080|consen 28 LLRFVSNTFDDLHPTTIGV 46 (209)
T ss_pred HHHHHhcccCccCCceeee
Confidence 6899999999999999875
No 253
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.36 E-value=79 Score=24.53 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 033950 34 AELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
|.|..+|++|.-||.+|+.|-+.
T Consensus 2 ~~~~~~E~~~~~le~~l~kl~K~ 24 (200)
T cd07637 2 ATIDEVETDVVEIEAKLDKLVKL 24 (200)
T ss_pred chHHHHHhhHHHHHHHHHHHHHH
Confidence 67899999999999999887654
No 254
>COG4550 Predicted membrane protein [Function unknown]
Probab=23.32 E-value=1.3e+02 Score=22.60 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 27 TGKHRILAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 27 ~GKhR~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
+||+- ++++-+..|..||+||+.+-=++
T Consensus 60 y~K~e---Alkqses~i~~le~ei~~~PlVe 87 (120)
T COG4550 60 YDKEE---ALKQSESKIDELEAEIDHLPLVE 87 (120)
T ss_pred hhHHH---HHHHHHHHHHHHHHHHhcCchHH
Confidence 44444 77777888888888877664333
No 255
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=23.18 E-value=1.5e+02 Score=18.86 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 28 GKHRILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
-.-..+.++...++.|.+|..+|+.+...
T Consensus 43 ~~~~~~~~l~es~~ki~~Lr~~L~k~~~~ 71 (72)
T cd00089 43 LLAEAEQMLRESKQKLELLKMQLEKLKQE 71 (72)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567778899999999999999888653
No 256
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.17 E-value=89 Score=29.96 Aligned_cols=39 Identities=31% Similarity=0.350 Sum_probs=30.7
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 18 AAAGGGTDTTGKHRILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 18 ~~~~~~~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
+..+.+-.+-|.=-+.+++.+|+.|+..|+.|++.+++.
T Consensus 798 ~~~~~~~~l~~~id~~~e~~rl~k~~~k~~~e~~~~~~k 836 (877)
T COG0525 798 GGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKK 836 (877)
T ss_pred ccceEEEeccchhhHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 344455566676778899999999999999999988754
No 257
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.06 E-value=1.3e+02 Score=21.00 Aligned_cols=23 Identities=26% Similarity=0.111 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (107)
++..++.|+++|.-|+.-.+.|+
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~ 106 (126)
T cd04785 84 ARAHLADVRARIADLRRLEAELK 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665555544
No 258
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.04 E-value=1.2e+02 Score=24.68 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
++|.|..|++|+--|+.-|++|.+
T Consensus 190 learv~aLe~eva~L~~rld~ll~ 213 (215)
T COG3132 190 LEARVEALEQEVAELRARLDSLLG 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999875
No 259
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=22.95 E-value=1.8e+02 Score=18.44 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 30 HRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L 53 (107)
..+..-.+.|.++|.-.++||+.+
T Consensus 22 ~~i~~~~~~L~~~i~~~~~eLr~~ 45 (87)
T PF08700_consen 22 KEIRQLENKLRQEIEEKDEELRKL 45 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677888888888888876
No 260
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=22.91 E-value=51 Score=21.36 Aligned_cols=15 Identities=27% Similarity=0.184 Sum_probs=12.1
Q ss_pred CCCCcchhHHHHHHH
Q 033950 22 GGTDTTGKHRILAEL 36 (107)
Q Consensus 22 ~~~d~~GKhR~~ael 36 (107)
++-|.+||||+..+-
T Consensus 36 Sp~D~y~~yR~~~kk 50 (56)
T PRK13130 36 SPEDKYGKYRRALKK 50 (56)
T ss_pred CCCCccHHHHHHHHH
Confidence 466999999987763
No 261
>PRK03762 hypothetical protein; Provisional
Probab=22.82 E-value=1.1e+02 Score=21.82 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
=.-++...+++++++.-+|+||+..+
T Consensus 7 ~~~m~kqaqkmQ~km~~~Q~el~~~~ 32 (103)
T PRK03762 7 FSKLGEMLEQMQKKAKQLEEENANKE 32 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 34466678889999999999999876
No 262
>KOG2691 consensus RNA polymerase II subunit 9 [Transcription]
Probab=22.79 E-value=44 Score=24.86 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=11.8
Q ss_pred cCCCCcccccCCCCC
Q 033950 72 ARPDPLLSVTNSPIN 86 (107)
Q Consensus 72 s~pDPLLP~t~g~~~ 86 (107)
-.+||.||.|....|
T Consensus 62 l~~DPTLPrts~~~C 76 (113)
T KOG2691|consen 62 LASDPTLPRTSDKHC 76 (113)
T ss_pred hccCCCcCccccccC
Confidence 378999999877644
No 263
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.79 E-value=1.5e+02 Score=20.34 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 30 HRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+-+..+++.|+++|.-|+.-.+.|+
T Consensus 84 ~~l~~~~~~l~~~i~~L~~~~~~L~ 108 (112)
T cd01282 84 AVLRRELARIDRQIADLTRSRDRLD 108 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666665555544
No 264
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=22.78 E-value=88 Score=29.82 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.|+.+++++|+.|+.-++.+|...+.
T Consensus 845 ~rLekel~kl~Kel~kl~~~L~n~~f 870 (1052)
T PRK14900 845 ARVDKEIGKVDQDLAVLERKLQNPSF 870 (1052)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCchh
Confidence 46777777777777777777666654
No 265
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.70 E-value=1.1e+02 Score=24.31 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033950 33 LAELKRVEQESRFLEEEL 50 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL 50 (107)
+-.|..|++||.-|...+
T Consensus 60 ~~ql~~lq~ev~~LrG~~ 77 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQI 77 (263)
T ss_pred HHHHHHHHHHHHHHhhHH
Confidence 334444444444444433
No 266
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.45 E-value=1.2e+02 Score=25.26 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 033950 37 KRVEQESRFLEEEL 50 (107)
Q Consensus 37 ~~LeqEi~fLeeEL 50 (107)
.+++.+|.-|+.||
T Consensus 76 ~~~~~eik~l~~eI 89 (265)
T COG3883 76 DQSKAEIKKLQKEI 89 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 267
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=22.35 E-value=1.7e+02 Score=21.51 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
..+++.++++++|+.-|+-+++.+..
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~~~ 48 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRMIK 48 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777666543
No 268
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=22.32 E-value=55 Score=22.40 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcC
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEAR 73 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~ 73 (107)
.=|++||+-.--|++=|+.+|.--..++-|++.+.-++.+
T Consensus 21 ~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~Ae~~ 60 (81)
T COG1722 21 EIVESLESGELPLEEALKEFERGMALYKECQEKLQQAEQR 60 (81)
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677777778888999999999999999988876643
No 269
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.26 E-value=2e+02 Score=23.32 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC---chhHHhHHHHHhhhc
Q 033950 36 LKRVEQESRFLEEELEELDKTE---NVSTICDELLKFMEA 72 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~~~---~aS~~CkEv~~~Ves 72 (107)
.+.-++++.-+|..|..+|++. .+++.|.++...|..
T Consensus 5 y~~t~~~~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~ 44 (213)
T KOG3251|consen 5 YQSTNRQLDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQ 44 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccchHHHHHHHHHhHHH
Confidence 4555666667777777777664 588899988877753
No 270
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=22.23 E-value=1.3e+02 Score=22.68 Aligned_cols=23 Identities=43% Similarity=0.562 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 033950 33 LAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.++|+.|+.++.-|++||..|..
T Consensus 59 r~~l~~l~~~l~~l~~eL~~Lr~ 81 (126)
T PF07028_consen 59 RSELKELKQELDVLSKELQALRK 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35588999999999999988864
No 271
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=22.06 E-value=1.4e+02 Score=20.03 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 033950 36 LKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~ 55 (107)
-+.|+.++.-||+++-.+|+
T Consensus 11 k~~Le~~L~~lE~qIy~~Et 30 (80)
T PF09340_consen 11 KKKLEKDLAALEKQIYDKET 30 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 272
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=22.02 E-value=95 Score=22.59 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchh
Q 033950 37 KRVEQESRFLEEELEELDKTENVS 60 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~aS 60 (107)
+.|...|.|||.|.+.+|.+...=
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL 51 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDL 51 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777665443
No 273
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=21.94 E-value=2e+02 Score=24.10 Aligned_cols=48 Identities=33% Similarity=0.493 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcC----CchhHHhHHHHHhhhcCCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKT----ENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~----~~aS~~CkEv~~~Ves~pDP 76 (107)
|..+..++..+..||..|+++-..||+. ...-.+|+|-+..=+.++.+
T Consensus 59 k~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~ 110 (384)
T PF03148_consen 59 KNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGI 110 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCc
Confidence 4455666777777777777666655543 33344777777777777654
No 274
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.91 E-value=1.5e+02 Score=22.22 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033950 32 ILAELKRVEQESRFLEEELE 51 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~ 51 (107)
++++|++|.+|+.-|.+.++
T Consensus 27 ~~~~I~~L~~e~~~ld~~i~ 46 (188)
T PF10018_consen 27 NQARIQQLRAEIEELDEQIR 46 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555566555555554443
No 275
>PRK11239 hypothetical protein; Provisional
Probab=21.84 E-value=1.2e+02 Score=24.60 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+.++|..|++|+.-|+..|++|.+
T Consensus 188 Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 188 LQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888777777643
No 276
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=21.78 E-value=1.6e+02 Score=23.72 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTENVST 61 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~ 61 (107)
.++.+++.+++|+..++++|+++-...-+-.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (364)
T TIGR01242 17 SLEKEKIRLERELERLRSEIERLRSPPLIVG 47 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 4566777777777777777777766554433
No 277
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=21.78 E-value=1.9e+02 Score=18.19 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+-..+|+.|.+.+..+-.-|+.||.
T Consensus 20 ~v~~~lq~Lt~kL~~vs~RLe~LEn 44 (47)
T PF10393_consen 20 KVTSALQSLTQKLDAVSKRLEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456888888888888888887774
No 278
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.70 E-value=2.3e+02 Score=18.16 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTENVS 60 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS 60 (107)
.++.+|.+++..+..+++.+..||.-..+.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~ 32 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAAN 32 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888887777765543
No 279
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.64 E-value=90 Score=27.97 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCc
Q 033950 34 AELKRVEQESRFLEEELEELDKTEN 58 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~ 58 (107)
++++.++ +|.-|+.||++|+.-..
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 3445555 88889988888887644
No 280
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.64 E-value=2.1e+02 Score=18.01 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 033950 27 TGKHRILAELKRVEQESRFLEEELE 51 (107)
Q Consensus 27 ~GKhR~~ael~~LeqEi~fLeeEL~ 51 (107)
-.|..++..|....+++.-|+.+|+
T Consensus 54 s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 54 SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777777776665
No 281
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=21.59 E-value=82 Score=30.02 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTEN 58 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (107)
-..+++++|+.|+..|+.||+.+++.-.
T Consensus 839 D~~~e~~rLekel~kl~Kel~kl~~~L~ 866 (1052)
T PRK14900 839 DLAAETARVDKEIGKVDQDLAVLERKLQ 866 (1052)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999886533
No 282
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=21.48 E-value=1.9e+02 Score=24.41 Aligned_cols=47 Identities=21% Similarity=0.156 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPD 75 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pD 75 (107)
.||+..=.+|.+-++.-++++|+-|+|+-.|-.-.+++...+...-|
T Consensus 314 ~~R~~~~~kR~~~~l~kl~~~l~il~gl~~~~~~idfIi~vI~~s~~ 360 (426)
T PF00521_consen 314 EFRLEYYQKRKQYLLEKLEERLHILEGLIKALNKIDFIIEVIRGSID 360 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc
Confidence 57888888888888888888888888888877777777777776644
No 283
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=21.46 E-value=1.9e+02 Score=23.15 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 30 HRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
|.+..+..+|..+|+-|+.++++|.
T Consensus 14 ~~~~~e~~~Lk~kir~le~~l~~Lk 38 (236)
T PF12017_consen 14 RTLKIENKKLKKKIRRLEKELKKLK 38 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555544
No 284
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.37 E-value=1.3e+02 Score=20.08 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 033950 35 ELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~ 56 (107)
-.+.|++++..|++++++|..+
T Consensus 75 ~~~~l~~~~~~l~~~i~~l~~~ 96 (97)
T cd04782 75 LIELLKKQEKEIKEEIEELQKI 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777888888888877654
No 285
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=21.31 E-value=1.9e+02 Score=20.36 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 30 HRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.-+...++.|+++|.-|+.-++.|+
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (133)
T cd04787 82 RLIEQRLAETERRIKELLKLRDRMQ 106 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777766555554
No 286
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=21.31 E-value=1.5e+02 Score=20.75 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
-+...++.|+++|..|+.-.+.|+
T Consensus 83 ~l~~~~~~l~~~i~~L~~~~~~l~ 106 (127)
T cd01108 83 LALEHIAELERKIAELQAMRRTLQ 106 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666665555444444
No 287
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=21.21 E-value=1.8e+02 Score=27.99 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPD 75 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pD 75 (107)
+||+..=.++.+-++.-+++.++-|||+-.|-..-.||++.+-+..|
T Consensus 367 ~~r~~~~~rr~~~~l~k~~~r~~i~eGl~~a~~~id~vi~~ir~s~~ 413 (957)
T PRK13979 367 EHQKEVVTRRTKKELEIAEKRFHIVEGFIKAIGIMDEIIKTIRSSKS 413 (957)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCC
Confidence 79999999999999999999999999999999999999998877654
No 288
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.12 E-value=1.3e+02 Score=20.00 Aligned_cols=22 Identities=5% Similarity=0.205 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 033950 35 ELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~ 56 (107)
-.+.|++++..|++++++|+.+
T Consensus 74 ~~~~l~~~~~~l~~~i~~l~~~ 95 (96)
T cd04768 74 LTAMLLEKKQAIQQKIDRLQQL 95 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4456888888888888888765
No 289
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=21.11 E-value=82 Score=16.46 Aligned_cols=9 Identities=56% Similarity=0.859 Sum_probs=6.7
Q ss_pred HHHHHHHHH
Q 033950 34 AELKRVEQE 42 (107)
Q Consensus 34 ael~~LeqE 42 (107)
|||++|.+|
T Consensus 3 aeLerLkne 11 (17)
T PF12107_consen 3 AELERLKNE 11 (17)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 678887766
No 290
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=21.09 E-value=1.4e+02 Score=26.11 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=24.9
Q ss_pred cccccchhhhhhcccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 3 GETASLGDEQMAGSRAAAGGGTDTTGKHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 3 ~~~~ss~~eqv~~~~~~~~~~~d~~GKhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
-++.+..|+|+.+ ..-.++......|++||+.++.|++.+
T Consensus 7 ~~~~~~~~~e~~~-----------mste~i~~rtrlldnEirI~~sev~ri 46 (424)
T KOG0652|consen 7 LEEEDALDQEILS-----------MSTEEIISRTRLLDNEIRIMKSEVQRI 46 (424)
T ss_pred ccchhhhhhhhhh-----------ccHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 3444455666655 123456666777888888888777654
No 291
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=21.04 E-value=1.6e+02 Score=20.93 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 033950 35 ELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE 54 (107)
.++.+.++|.++++||+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (204)
T cd01878 7 DRRLIRERIAKLRRELEKVK 26 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666655544
No 292
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=20.97 E-value=89 Score=23.30 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=16.8
Q ss_pred hHHhHHHHHhhhcCCCCccccc
Q 033950 60 STICDELLKFMEARPDPLLSVT 81 (107)
Q Consensus 60 S~~CkEv~~~Ves~pDPLLP~t 81 (107)
-.+|-=+-.|.-.-||||+|..
T Consensus 73 ~~va~lLK~fLReLPepLip~~ 94 (188)
T cd04383 73 NSVAGVLKLYFRGLENPLFPKE 94 (188)
T ss_pred HHHHHHHHHHHHhCCCccCCHH
Confidence 3466667778888999999964
No 293
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=20.78 E-value=1.1e+02 Score=20.94 Aligned_cols=39 Identities=15% Similarity=0.364 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhHHhHHHHH
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK-TENVSTICDELLK 68 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~-~~~aS~~CkEv~~ 68 (107)
..+.++|+.|+..-.-|.+||.+.+. .......|+||..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~ 74 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR 74 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665543 2233345666544
No 294
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.72 E-value=81 Score=25.97 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchh
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVS 60 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS 60 (107)
..+..|++||+-|+.++++|+|++..-
T Consensus 56 ~~~~~l~~Ql~~l~g~i~~L~~~~~~q 82 (262)
T COG1729 56 YRLTQLEQQLRQLQGKIEELRGIQELQ 82 (262)
T ss_pred hccHHHHHHHHHHHhhHHHHHhHHHHH
Confidence 357889999999999999998744433
No 295
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.69 E-value=1.9e+02 Score=19.36 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHH
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVSTICDELL 67 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~ 67 (107)
.-+..++..|.+++..|+.++..+.|=+-.+---+||.
T Consensus 15 e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~ 52 (100)
T PF01486_consen 15 EELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQ 52 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHH
Confidence 44667888888888888888887777665554445543
No 296
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=20.63 E-value=1.5e+02 Score=23.03 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.-+++..+++|....+.++.+|++|++
T Consensus 133 ~~~l~~H~~kl~~~~ke~~~kLeeLek 159 (177)
T PF03234_consen 133 LEELQEHRAKLEKEQKELKKKLEELEK 159 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777888887775
No 297
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=20.58 E-value=74 Score=24.36 Aligned_cols=29 Identities=21% Similarity=0.412 Sum_probs=8.1
Q ss_pred HHHhhcCCchhHHhHHHHH-h--hhcCCCCcc
Q 033950 50 LEELDKTENVSTICDELLK-F--MEARPDPLL 78 (107)
Q Consensus 50 L~~LE~~~~aS~~CkEv~~-~--Ves~pDPLL 78 (107)
+++|+.++.+-|.=-++.- . +....||+|
T Consensus 85 ~~qL~~~~~~gR~~i~lD~d~~r~~~~~n~~L 116 (229)
T PF06251_consen 85 IQQLQSLEATGRVVINLDPDWVRLNPEYNPLL 116 (229)
T ss_dssp HHHHTT--B----S----TTS-EESTTSS-B-
T ss_pred HHHHHhccccceEEEecCHHHhhccccCCCcC
Confidence 4455555555554434421 2 234566665
No 298
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=20.58 E-value=2.2e+02 Score=17.96 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033950 31 RILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~ 52 (107)
++...|+.+++++..++.+++.
T Consensus 56 ~l~~~i~~~~~~~~~~~~~~~~ 77 (123)
T PF02050_consen 56 ALEQAIQQQQQELERLEQEVEQ 77 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555443
No 299
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.54 E-value=2.1e+02 Score=21.37 Aligned_cols=31 Identities=10% Similarity=0.264 Sum_probs=22.1
Q ss_pred chhHHhHHHHHhhhcCCCCcccccCCCCChhhHHhhc
Q 033950 58 NVSTICDELLKFMEARPDPLLSVTNSPINPIWDRWFE 94 (107)
Q Consensus 58 ~aS~~CkEv~~~Ves~pDPLLP~t~g~~~~~WdrWfe 94 (107)
.+-.++-=+-.|.-.-|+||+|.. .+++|..
T Consensus 72 d~h~va~lLK~fLReLpePli~~~------~~~~~i~ 102 (187)
T cd04389 72 DPHVPASLLKLWLRELEEPLIPDA------LYQQCIS 102 (187)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCHH------HHHHHHH
Confidence 344566667778888999999974 4666654
No 300
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.52 E-value=1.4e+02 Score=27.53 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+-.|+++|.+|++..||++..||.
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777766666666664
No 301
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=20.48 E-value=1.6e+02 Score=17.83 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 033950 28 GKHRILAELKRVEQESRFLEEELE 51 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~ 51 (107)
.-|| +.=|+.++.+|..|.++|+
T Consensus 32 ~e~~-~~li~~~~~~i~~~~~~lk 54 (54)
T PF04423_consen 32 EEHR-QELIKKYKSEIEELPEKLK 54 (54)
T ss_dssp HHHH-HHHHHHHHHHHHHHHH---
T ss_pred HHHH-HHHHHHHHHHHHhhhhccC
Confidence 3355 7788899999999998875
No 302
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.35 E-value=2.2e+02 Score=18.92 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 033950 35 ELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~L 53 (107)
.|+++=..|..|+.|+++|
T Consensus 12 ki~~aveti~~Lq~e~eeL 30 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEEL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 303
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=20.34 E-value=1.9e+02 Score=22.63 Aligned_cols=44 Identities=32% Similarity=0.372 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEAR 73 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~ 73 (107)
.++.++...|=+.-..|++-|++++...+-+.--+++++|+.+.
T Consensus 210 ~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 253 (262)
T PRK05289 210 HALRRAYKLLYRSGLTLEEALEELAEEYPDSPEVKEILDFIESS 253 (262)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHhhccCCHHHHHHHHHHhcC
Confidence 45566777777777778888888877666666778899999653
No 304
>PRK14145 heat shock protein GrpE; Provisional
Probab=20.34 E-value=79 Score=24.88 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 033950 34 AELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~L 53 (107)
.++..|+.++.-|+++++++
T Consensus 45 ~e~~~l~~~l~~le~e~~el 64 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEY 64 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554443
No 305
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=20.26 E-value=1.2e+02 Score=21.94 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033950 35 ELKRVEQESRFLEEELEE 52 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~ 52 (107)
-+.+++.||..||+||..
T Consensus 53 tle~ve~Ei~~lQ~qL~~ 70 (99)
T PF11083_consen 53 TLEQVEKEIRELQNQLGL 70 (99)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 366788888888888753
No 306
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.24 E-value=1.9e+02 Score=20.91 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033950 35 ELKRVEQESRFLEEELE 51 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~ 51 (107)
.|..|+++|..|-+++.
T Consensus 9 ~l~~le~~l~~l~~el~ 25 (110)
T PRK13169 9 ALDDLEQNLGVLLKELG 25 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 307
>PRK14624 hypothetical protein; Provisional
Probab=20.18 E-value=1.3e+02 Score=21.89 Aligned_cols=24 Identities=4% Similarity=0.239 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
++-..|.+++++.-+|+||++.+=
T Consensus 11 ~mkqAq~mQ~km~~~QeeL~~~~v 34 (115)
T PRK14624 11 ALSNMGNIREKMEEVKKRIASIRV 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHhccEE
Confidence 556778899999999999988753
No 308
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=20.06 E-value=1.2e+02 Score=21.41 Aligned_cols=34 Identities=44% Similarity=0.642 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccc
Q 033950 37 KRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSV 80 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~ 80 (107)
++|++++.|++..-.+| .++++.+|..-+.++..
T Consensus 74 ~~ld~~L~~ie~qQ~eL----------e~~L~~lE~~~~~l~~~ 107 (116)
T PF05064_consen 74 KRLDQELDFIEAQQKEL----------EELLDPLEKQVEKLLSN 107 (116)
T ss_dssp HHHHHHHHHHHHHHHCH----------HHHHCCCCCTT------
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 44455555555444444 35666777776766643
Done!