Query 033950
Match_columns 107
No_of_seqs 54 out of 56
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 13:34:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_G GT-gamma; complex (GTP- 96.9 0.00034 1.2E-08 46.4 1.6 57 31-89 14-72 (73)
2 1fxk_C Protein (prefoldin); ar 89.0 0.47 1.6E-05 32.3 4.0 54 30-83 4-59 (133)
3 3v5w_G G gamma-I, guanine nucl 87.0 0.28 9.6E-06 33.0 1.8 51 36-88 15-67 (77)
4 2wg5_A General control protein 85.7 0.94 3.2E-05 30.9 4.0 36 32-67 12-47 (109)
5 3ra3_B P2F; coiled coil domain 84.6 1.3 4.3E-05 24.8 3.4 25 30-54 3-27 (28)
6 1buu_A Protein (mannose-bindin 82.8 0.97 3.3E-05 31.0 3.1 25 31-55 20-44 (168)
7 2l5g_B Putative uncharacterize 78.5 3 0.0001 25.3 3.8 26 30-55 12-37 (42)
8 2er8_A Regulatory protein Leu3 77.7 1.7 5.7E-05 26.3 2.6 23 33-55 48-70 (72)
9 3m9b_A Proteasome-associated A 77.7 2.2 7.5E-05 33.8 3.9 25 31-55 72-96 (251)
10 2pbi_A Regulator of G-protein 77.1 1.9 6.4E-05 35.7 3.5 45 35-81 220-266 (424)
11 4dac_A Computationally designe 77.0 1.7 5.9E-05 24.3 2.2 23 30-52 4-26 (28)
12 3d24_B Peroxisome proliferator 76.0 1.1 3.8E-05 24.9 1.3 21 57-77 4-24 (26)
13 1pwb_A SP-D, PSP-D, pulmonary 74.4 3 0.0001 28.6 3.5 21 35-55 32-52 (177)
14 1a93_B MAX protein, coiled coi 73.3 3.9 0.00013 23.8 3.2 23 32-54 12-34 (34)
15 2lw1_A ABC transporter ATP-bin 72.8 4.7 0.00016 26.2 4.0 25 31-55 19-43 (89)
16 1dh3_A Transcription factor CR 71.8 5.7 0.0002 24.2 3.9 28 27-54 15-42 (55)
17 2zdi_C Prefoldin subunit alpha 71.7 1.7 6E-05 30.3 1.8 54 30-83 12-69 (151)
18 1nkp_B MAX protein, MYC proto- 71.2 4.4 0.00015 25.8 3.5 20 34-53 61-80 (83)
19 1zme_C Proline utilization tra 71.1 3.9 0.00013 24.3 3.0 21 35-55 45-65 (70)
20 1rtm_1 Mannose-binding protein 70.7 4.2 0.00014 26.9 3.4 25 32-56 2-26 (149)
21 2ke4_A CDC42-interacting prote 68.4 3.3 0.00011 28.2 2.5 36 24-59 12-47 (98)
22 1htn_A Tetranectin; plasminoge 66.6 2.1 7E-05 29.5 1.2 24 33-56 21-44 (182)
23 3bbp_D GRIP and coiled-coil do 66.6 5.8 0.0002 26.4 3.3 24 34-57 43-66 (71)
24 2wuj_A Septum site-determining 65.3 6.6 0.00023 24.0 3.3 25 31-55 31-55 (57)
25 3viq_B Mating-type switching p 65.2 8.7 0.0003 26.0 4.1 27 29-55 3-29 (85)
26 1nkp_A C-MYC, MYC proto-oncoge 63.6 9.2 0.00032 25.0 3.9 25 31-55 63-87 (88)
27 1t3j_A Mitofusin 1; coiled coi 63.2 6.8 0.00023 27.0 3.3 29 37-65 50-78 (96)
28 1nlw_A MAD protein, MAX dimeri 62.9 7.7 0.00026 25.1 3.4 20 32-51 59-78 (80)
29 3m91_A Proteasome-associated A 62.0 12 0.00039 23.1 3.9 24 30-53 26-49 (51)
30 1xaw_A Occludin; coiled-coil, 61.9 10 0.00036 27.6 4.3 47 30-76 62-109 (140)
31 3trt_A Vimentin; cytoskeleton, 60.7 13 0.00044 23.1 4.0 24 32-55 54-77 (77)
32 2jn6_A Protein CGL2762, transp 60.4 0.82 2.8E-05 28.7 -1.6 26 32-57 64-89 (97)
33 3pbf_A Pulmonary surfactant-as 60.1 11 0.00037 24.6 3.8 26 30-56 5-30 (148)
34 1cxz_B Protein (PKN); protein- 59.4 11 0.00039 25.4 3.8 27 29-55 58-84 (86)
35 2z5i_A TM, general control pro 58.7 8.4 0.00029 23.5 2.8 18 35-52 13-30 (52)
36 2rjz_A PILO protein; structura 57.5 5.6 0.00019 28.0 2.2 45 26-70 7-51 (147)
37 1j2z_A Acyl-[acyl-carrier-prot 57.5 4.8 0.00017 29.9 1.9 36 44-79 222-257 (270)
38 3qx3_A DNA topoisomerase 2-bet 57.3 14 0.00047 33.6 5.0 40 33-72 733-772 (803)
39 1jnm_A Proto-oncogene C-JUN; B 54.4 13 0.00044 22.7 3.2 15 35-49 23-37 (62)
40 2ovc_A Potassium voltage-gated 54.4 22 0.00075 20.3 3.9 29 27-55 3-31 (33)
41 1ci6_A Transcription factor AT 54.2 14 0.00047 22.9 3.3 18 36-53 32-49 (63)
42 2lw9_A Unconventionnal myosin- 54.1 11 0.00038 23.6 2.8 19 31-49 3-21 (51)
43 3l4j_A DNA topoisomerase 2; to 54.0 17 0.00057 32.8 5.0 40 33-72 706-745 (757)
44 2yf2_A C4B binding protein; im 54.0 15 0.00052 23.8 3.6 25 30-54 30-54 (65)
45 3kin_B Kinesin heavy chain; mo 53.7 15 0.00052 25.1 3.8 22 31-52 93-114 (117)
46 1fxk_A Prefoldin; archaeal pro 53.6 17 0.00057 23.2 3.8 24 31-54 12-35 (107)
47 1t2k_D Cyclic-AMP-dependent tr 53.3 17 0.00058 22.0 3.6 21 33-53 21-41 (61)
48 2dgc_A Protein (GCN4); basic d 52.0 22 0.00076 22.1 4.1 27 29-55 25-51 (63)
49 2zqm_A Prefoldin beta subunit 51.5 19 0.00064 23.3 3.8 23 31-53 17-39 (117)
50 4dzn_A Coiled-coil peptide CC- 51.2 17 0.00059 20.8 3.1 19 35-53 3-21 (33)
51 4fla_A Regulation of nuclear P 50.4 26 0.00089 25.2 4.8 39 37-75 103-149 (152)
52 1hjb_A Ccaat/enhancer binding 50.3 16 0.00055 24.4 3.4 10 71-80 74-83 (87)
53 3ol1_A Vimentin; structural ge 50.3 17 0.00058 24.9 3.6 17 39-55 88-104 (119)
54 2wt7_A Proto-oncogene protein 49.8 15 0.00051 22.6 3.0 22 32-53 21-42 (63)
55 2wvr_A Geminin; DNA replicatio 48.9 22 0.00075 27.7 4.4 44 34-77 122-166 (209)
56 1nkp_B MAX protein, MYC proto- 48.6 25 0.00084 22.2 4.0 22 32-53 52-73 (83)
57 1lq7_A Alpha3W; three helix bu 48.2 12 0.0004 24.4 2.3 19 35-53 49-67 (67)
58 3mq7_A Bone marrow stromal ant 47.6 19 0.00065 26.0 3.6 20 34-53 78-97 (121)
59 2yy0_A C-MYC-binding protein; 47.5 24 0.00082 21.4 3.6 29 25-53 17-45 (53)
60 1hwt_C Protein (heme activator 47.2 9.7 0.00033 23.1 1.8 20 34-53 58-77 (81)
61 1yzm_A FYVE-finger-containing 46.2 21 0.00073 22.0 3.2 27 29-55 23-49 (51)
62 2akf_A Coronin-1A; coiled coil 46.0 34 0.0012 19.5 3.8 26 31-56 3-28 (32)
63 3pjs_K KCSA, voltage-gated pot 45.9 16 0.00054 25.5 3.0 26 33-58 137-162 (166)
64 2ve7_A Kinetochore protein HEC 45.6 12 0.00043 29.3 2.6 22 35-56 186-207 (315)
65 1ci6_A Transcription factor AT 45.2 24 0.00082 21.7 3.4 22 32-53 21-42 (63)
66 2pr5_A Blue-light photorecepto 45.2 20 0.00068 21.5 3.0 27 27-53 105-131 (132)
67 4fz4_A 0197-18KD, uncharacteri 44.8 24 0.00081 26.4 3.9 27 33-59 3-29 (154)
68 2zqm_A Prefoldin beta subunit 44.7 25 0.00087 22.6 3.7 22 33-54 69-90 (117)
69 3eff_K Voltage-gated potassium 44.3 22 0.00076 23.7 3.4 26 34-59 111-136 (139)
70 1fxk_A Prefoldin; archaeal pro 44.1 27 0.00092 22.2 3.7 23 32-54 63-85 (107)
71 3iv1_A Tumor susceptibility ge 44.0 32 0.0011 22.8 4.1 26 28-53 40-65 (78)
72 1gd2_E Transcription factor PA 44.0 33 0.0011 22.0 4.0 25 29-53 24-48 (70)
73 1x8y_A Lamin A/C; structural p 43.6 32 0.0011 22.3 4.0 24 30-53 24-47 (86)
74 3rrk_A V-type ATPase 116 kDa s 43.6 19 0.00065 27.4 3.3 32 22-53 214-252 (357)
75 1t3j_A Mitofusin 1; coiled coi 43.5 32 0.0011 23.6 4.2 41 31-71 51-92 (96)
76 1ic2_A Tropomyosin alpha chain 43.2 25 0.00085 22.4 3.4 21 34-54 41-61 (81)
77 1wlq_A Geminin; coiled-coil; 2 43.0 33 0.0011 23.2 4.0 21 35-55 46-66 (83)
78 3nmd_A CGMP dependent protein 43.0 30 0.001 22.7 3.8 14 30-43 22-35 (72)
79 1grj_A GREA protein; transcrip 43.0 26 0.00089 24.7 3.8 22 37-58 56-77 (158)
80 1z0k_B FYVE-finger-containing 42.6 23 0.00078 23.1 3.1 27 29-55 41-67 (69)
81 1lwu_B Fibrinogen beta chain; 42.6 20 0.00067 28.7 3.4 40 30-69 31-82 (323)
82 2dq0_A Seryl-tRNA synthetase; 42.5 47 0.0016 27.3 5.7 50 29-84 71-120 (455)
83 1ybx_A Conserved hypothetical 42.0 21 0.00073 25.8 3.2 29 29-57 43-71 (143)
84 1hlo_A Protein (transcription 41.9 21 0.0007 22.5 2.8 19 36-54 59-77 (80)
85 3qne_A Seryl-tRNA synthetase, 41.3 50 0.0017 27.9 5.8 48 30-83 74-121 (485)
86 4gfh_A DNA topoisomerase 2; to 41.1 36 0.0012 31.6 5.2 38 34-71 1127-1164(1177)
87 2nov_A DNA topoisomerase 4 sub 40.6 27 0.00092 29.8 4.1 48 29-76 351-398 (496)
88 1uii_A Geminin; human, DNA rep 40.5 33 0.0011 23.1 3.8 22 35-56 47-68 (83)
89 3vmx_A Voltage-gated hydrogen 39.9 31 0.0011 21.2 3.3 26 30-55 14-39 (48)
90 1gu4_A CAAT/enhancer binding p 39.8 38 0.0013 22.1 3.9 20 35-54 51-70 (78)
91 3mq9_A Bone marrow stromal ant 39.7 25 0.00086 27.5 3.5 22 33-54 442-463 (471)
92 3r0s_A Acyl-[acyl-carrier-prot 39.4 28 0.00097 25.4 3.6 34 44-78 225-258 (266)
93 1q08_A Zn(II)-responsive regul 39.4 67 0.0023 19.9 5.4 24 31-54 43-66 (99)
94 1gk4_A Vimentin; intermediate 39.2 42 0.0015 21.5 4.0 24 30-53 22-45 (84)
95 3a2a_A Voltage-gated hydrogen 39.1 27 0.00092 22.4 3.0 25 32-56 23-47 (58)
96 1j8b_A YBAB; hypothetical prot 39.0 20 0.00067 24.5 2.5 27 31-57 12-38 (112)
97 3cve_A Homer protein homolog 1 38.9 31 0.0011 22.5 3.3 33 28-60 1-33 (72)
98 1go4_E MAD1 (mitotic arrest de 38.6 34 0.0012 23.6 3.7 25 31-55 16-40 (100)
99 1am9_A Srebp-1A, protein (ster 38.6 14 0.00047 23.7 1.6 21 32-52 55-75 (82)
100 1am9_A Srebp-1A, protein (ster 37.7 43 0.0015 21.3 3.8 22 36-57 52-73 (82)
101 2doh_C Fragment, plasminogen-b 37.6 33 0.0011 19.4 2.9 20 33-53 7-26 (30)
102 2vz4_A Tipal, HTH-type transcr 37.5 34 0.0012 22.1 3.4 27 29-55 76-102 (108)
103 1txp_A HnRNP C, heterogeneous 37.4 54 0.0019 18.2 3.7 25 31-55 3-27 (28)
104 3coq_A Regulatory protein GAL4 37.1 36 0.0012 20.7 3.3 23 33-55 44-66 (89)
105 2inr_A DNA topoisomerase 4 sub 37.0 32 0.0011 29.5 4.0 48 29-76 375-422 (514)
106 1uuj_A Platelet-activating fac 36.9 13 0.00043 25.2 1.2 23 30-52 61-83 (88)
107 3bj4_A Potassium voltage-gated 36.8 45 0.0015 20.5 3.6 28 28-55 11-38 (49)
108 3kqg_A Langerin, C-type lectin 36.8 29 0.00099 23.3 3.1 24 32-55 14-37 (182)
109 2cly_B ATP synthase D chain, m 36.7 36 0.0012 24.6 3.7 28 35-62 103-130 (160)
110 4b4t_J 26S protease regulatory 36.6 33 0.0011 28.1 3.9 28 30-57 42-69 (405)
111 2qup_A BH1478 protein; structu 36.6 39 0.0013 23.9 3.8 26 25-50 94-119 (145)
112 3efg_A Protein SLYX homolog; x 36.4 20 0.00067 23.3 2.1 22 33-54 41-62 (78)
113 2zvf_A Alanyl-tRNA synthetase; 36.3 44 0.0015 22.8 4.0 23 30-52 35-57 (171)
114 1hjb_A Ccaat/enhancer binding 36.0 40 0.0014 22.4 3.6 21 32-52 55-75 (87)
115 2xcs_B DNA gyrase subunit B, D 36.0 35 0.0012 30.3 4.2 48 29-76 558-605 (692)
116 2p22_A Suppressor protein STP2 36.0 33 0.0011 25.5 3.5 29 27-55 56-84 (174)
117 1l8d_A DNA double-strand break 35.8 49 0.0017 21.3 4.0 22 33-54 70-91 (112)
118 1ses_A Seryl-tRNA synthetase; 35.7 73 0.0025 25.7 5.8 46 30-81 67-112 (421)
119 3qfl_A MLA10; coiled-coil, (CC 35.6 31 0.0011 22.9 3.0 18 36-53 21-38 (115)
120 3azd_A Short alpha-tropomyosin 35.6 23 0.0008 20.1 2.1 24 32-55 9-32 (37)
121 1t2k_D Cyclic-AMP-dependent tr 35.4 60 0.0021 19.4 4.1 21 34-54 36-56 (61)
122 2zxx_A Geminin; coiled-coil, c 35.1 50 0.0017 21.9 3.9 32 35-69 35-66 (79)
123 1gmj_A ATPase inhibitor; coile 35.1 51 0.0018 22.2 4.0 25 31-55 37-65 (84)
124 3a7p_A Autophagy protein 16; c 34.9 41 0.0014 24.9 3.8 24 29-52 70-93 (152)
125 1zvu_A Topoisomerase IV subuni 34.7 37 0.0013 30.3 4.1 48 29-76 326-373 (716)
126 1gmj_A ATPase inhibitor; coile 34.5 49 0.0017 22.3 3.8 22 31-52 48-69 (84)
127 1wle_A Seryl-tRNA synthetase; 34.4 63 0.0021 27.1 5.3 46 31-82 120-165 (501)
128 1r8d_A Transcription activator 34.3 56 0.0019 21.0 4.1 26 29-54 77-102 (109)
129 3swk_A Vimentin; cytoskeleton, 34.1 32 0.0011 22.5 2.8 20 37-56 66-85 (86)
130 2fxo_A Myosin heavy chain, car 33.9 49 0.0017 22.6 3.9 24 32-55 102-125 (129)
131 3gpv_A Transcriptional regulat 33.7 46 0.0016 22.9 3.8 21 33-53 101-121 (148)
132 3v86_A De novo design helix; c 33.5 62 0.0021 17.7 3.6 22 32-53 5-26 (27)
133 2a26_A Calcyclin-binding prote 33.2 41 0.0014 20.4 3.0 17 37-53 30-46 (50)
134 2gkw_A TNF receptor-associated 33.1 52 0.0018 23.2 4.0 26 31-56 11-36 (192)
135 2dq3_A Seryl-tRNA synthetase; 33.0 51 0.0017 26.7 4.4 48 30-83 71-118 (425)
136 3a7o_A Autophagy protein 16; c 33.0 48 0.0016 22.1 3.5 21 31-51 22-42 (75)
137 2ve7_A Kinetochore protein HEC 32.6 44 0.0015 26.1 3.8 40 29-68 187-234 (315)
138 3lpx_A GYRA, DNA gyrase, A sub 32.3 39 0.0013 29.1 3.8 48 29-76 326-373 (500)
139 2v4h_A NF-kappa-B essential mo 32.3 35 0.0012 24.1 2.9 25 29-53 85-109 (110)
140 1pyi_A Protein (pyrimidine pat 32.2 42 0.0014 20.8 3.1 23 33-55 47-69 (96)
141 3u1c_A Tropomyosin alpha-1 cha 32.0 45 0.0015 22.1 3.4 21 34-54 44-64 (101)
142 3hfe_A Potassium voltage-gated 31.7 46 0.0016 18.9 2.8 22 32-53 8-29 (31)
143 4e61_A Protein BIM1; EB1-like 31.5 51 0.0017 23.0 3.7 35 35-69 19-61 (106)
144 2xv5_A Lamin-A/C; structural p 31.4 56 0.0019 21.0 3.6 21 33-53 4-24 (74)
145 1l8d_A DNA double-strand break 31.3 60 0.0021 20.9 3.8 20 35-54 65-84 (112)
146 3iv1_A Tumor susceptibility ge 31.1 67 0.0023 21.3 4.0 25 31-55 50-74 (78)
147 3q8t_A Beclin-1; autophagy, AT 30.9 50 0.0017 21.9 3.4 24 32-55 9-32 (96)
148 1q06_A Transcriptional regulat 30.9 47 0.0016 22.4 3.4 26 30-55 82-107 (135)
149 4b4t_K 26S protease regulatory 30.8 58 0.002 26.5 4.4 21 31-51 46-66 (428)
150 3err_A Fusion protein of micro 30.7 49 0.0017 27.9 4.1 58 29-92 175-232 (536)
151 3mq7_A Bone marrow stromal ant 30.3 64 0.0022 23.2 4.1 20 33-52 70-89 (121)
152 3qks_A DNA double-strand break 30.1 56 0.0019 22.8 3.7 26 31-56 172-197 (203)
153 3viq_A SWI5-dependent recombin 29.9 55 0.0019 22.9 3.6 18 30-47 10-27 (122)
154 3ilw_A DNA gyrase subunit A; D 29.9 52 0.0018 28.0 4.1 48 29-76 337-384 (470)
155 2xkj_E Topoisomerase IV; type 29.3 47 0.0016 29.9 3.9 48 29-76 620-667 (767)
156 2dnx_A Syntaxin-12; snare, HAB 29.0 1.1E+02 0.0037 20.9 5.0 41 16-56 2-43 (130)
157 3tnu_B Keratin, type II cytosk 29.0 37 0.0013 23.1 2.6 24 33-56 35-58 (129)
158 3ni0_A Bone marrow stromal ant 28.7 41 0.0014 23.5 2.7 23 32-54 65-87 (99)
159 2jee_A YIIU; FTSZ, septum, coi 28.4 74 0.0025 21.2 3.9 24 31-54 10-33 (81)
160 2wt7_A Proto-oncogene protein 28.4 91 0.0031 18.9 4.1 17 37-53 40-56 (63)
161 2zvf_A Alanyl-tRNA synthetase; 28.4 61 0.0021 22.1 3.6 39 31-70 29-67 (171)
162 3tnu_B Keratin, type II cytosk 28.3 74 0.0025 21.5 4.0 26 30-55 46-71 (129)
163 4emc_A Monopolin complex subun 27.8 56 0.0019 25.0 3.6 20 35-54 35-54 (190)
164 2p2u_A HOST-nuclease inhibitor 27.8 71 0.0024 22.9 4.0 19 30-48 48-66 (171)
165 1uii_A Geminin; human, DNA rep 27.7 82 0.0028 21.2 4.0 23 32-54 51-73 (83)
166 3tnu_A Keratin, type I cytoske 26.6 83 0.0028 21.4 4.0 25 31-55 49-73 (131)
167 1z0j_B FYVE-finger-containing 26.5 57 0.002 20.7 2.9 26 30-55 31-56 (59)
168 3v1a_A Computational design, M 26.5 54 0.0018 20.0 2.7 25 29-53 22-46 (48)
169 4e6u_A Acyl-[acyl-carrier-prot 26.4 36 0.0012 24.6 2.2 29 45-73 230-259 (265)
170 3gpv_A Transcriptional regulat 26.3 85 0.0029 21.5 4.1 20 36-55 97-116 (148)
171 3hh0_A Transcriptional regulat 26.2 1.3E+02 0.0045 20.6 5.1 22 34-55 94-115 (146)
172 2v71_A Nuclear distribution pr 26.1 9.1 0.00031 29.0 -1.1 32 29-60 156-187 (189)
173 2wt7_B Transcription factor MA 26.1 90 0.0031 21.0 4.0 32 34-67 48-79 (90)
174 2a3d_A Protein (de novo three- 25.7 79 0.0027 20.6 3.6 24 34-57 26-49 (73)
175 2xdj_A Uncharacterized protein 25.4 82 0.0028 20.6 3.7 17 39-55 25-41 (83)
176 3pp5_A BRK1, protein brick1; t 25.4 69 0.0024 21.0 3.3 22 32-53 50-71 (73)
177 1r8e_A Multidrug-efflux transp 25.1 87 0.003 22.4 4.1 26 30-55 82-107 (278)
178 2knp_A Mcocc-1; disulfide-rich 24.8 19 0.00064 20.6 0.3 7 100-106 15-21 (33)
179 2l6f_A Focal adhesion kinase 1 30.7 15 0.00053 28.6 0.0 46 35-82 21-66 (215)
180 3rrk_A V-type ATPase 116 kDa s 24.6 78 0.0027 24.0 3.9 18 36-53 228-245 (357)
181 4etp_A Kinesin-like protein KA 24.5 38 0.0013 27.3 2.2 22 33-54 16-37 (403)
182 1yf2_A Type I restriction-modi 24.4 85 0.0029 22.9 4.0 33 24-56 376-408 (425)
183 3tq7_B Microtubule-associated 24.4 27 0.00092 23.2 1.1 45 33-77 14-63 (82)
184 4etp_A Kinesin-like protein KA 24.2 68 0.0023 25.8 3.7 19 35-53 11-29 (403)
185 3mov_A Lamin-B1; LMNB1, B-type 24.2 1E+02 0.0035 20.4 4.0 24 31-54 34-57 (95)
186 2j5u_A MREC protein; bacterial 23.8 13 0.00043 28.3 -0.7 48 25-72 17-64 (255)
187 2gr7_A Adhesin; trimeric autot 23.6 65 0.0022 22.6 3.1 50 27-79 25-74 (129)
188 2l5g_A GPS2 protein, G protein 23.4 88 0.003 18.4 3.1 19 35-53 16-34 (38)
189 2gd5_A Charged multivesicular 23.3 1E+02 0.0034 21.9 4.1 26 29-54 16-41 (179)
190 3lss_A Seryl-tRNA synthetase; 23.3 1.4E+02 0.0049 25.0 5.6 46 33-84 109-155 (484)
191 3na7_A HP0958; flagellar bioge 23.2 80 0.0027 23.4 3.7 28 25-52 88-115 (256)
192 1h7c_A Tubulin-specific chaper 23.0 87 0.003 21.2 3.6 38 29-71 68-105 (108)
193 4adz_A CSOR; transcription, co 22.6 59 0.002 23.6 2.7 47 25-71 40-86 (136)
194 2rbd_A BH2358 protein; putativ 22.5 1E+02 0.0034 21.3 3.9 25 32-57 52-76 (171)
195 3t97_C Nuclear pore glycoprote 22.4 74 0.0025 20.1 2.9 22 33-54 25-46 (64)
196 1fzc_C Fibrin; blood coagulati 22.4 88 0.003 25.0 4.0 39 30-68 21-71 (319)
197 3uul_A Utrophin; spectrin repe 22.4 1.4E+02 0.0048 18.2 4.8 37 19-55 28-64 (118)
198 2k48_A Nucleoprotein; viral pr 22.1 1.5E+02 0.0052 20.8 4.7 46 26-77 26-72 (107)
199 2inr_A DNA topoisomerase 4 sub 22.1 88 0.003 26.8 4.1 43 34-76 454-501 (514)
200 2w83_C C-JUN-amino-terminal ki 21.9 1.3E+02 0.0044 20.1 4.1 26 29-54 32-57 (77)
201 3rty_A Period circadian protei 21.9 65 0.0022 25.1 3.1 16 57-72 312-327 (339)
202 3v26_X ORF3, ORF95, probable s 21.9 87 0.003 20.3 3.3 29 23-53 67-95 (101)
203 3na7_A HP0958; flagellar bioge 21.8 72 0.0025 23.7 3.2 19 36-54 92-110 (256)
204 2w6a_A ARF GTPase-activating p 21.7 74 0.0025 20.6 2.8 18 37-54 37-54 (63)
205 3gp4_A Transcriptional regulat 21.7 1.2E+02 0.0041 20.7 4.1 26 29-54 83-108 (142)
206 2ic6_A Nucleocapsid protein; h 21.6 51 0.0018 21.9 2.1 19 59-77 24-42 (78)
207 1t6f_A Geminin; coiled-coil, c 21.1 1.4E+02 0.0046 17.5 3.8 24 31-54 11-34 (37)
208 1yf2_A Type I restriction-modi 21.0 1.1E+02 0.0037 22.3 4.0 35 23-57 165-199 (425)
209 2qia_A UDP-N-acetylglucosamine 20.9 46 0.0016 23.9 1.9 29 45-73 228-256 (262)
210 2apo_B Ribosome biogenesis pro 20.7 51 0.0017 20.7 1.8 15 22-36 37-51 (60)
211 3hnw_A Uncharacterized protein 20.7 94 0.0032 21.8 3.4 18 34-51 82-99 (138)
212 3he5_A Synzip1; heterodimeric 20.6 85 0.0029 19.2 2.8 33 36-71 5-37 (49)
213 4emc_A Monopolin complex subun 20.5 94 0.0032 23.7 3.6 25 31-55 24-48 (190)
214 3i00_A HIP-I, huntingtin-inter 20.4 1.3E+02 0.0044 20.9 4.0 29 34-64 15-43 (120)
215 1gax_A Valrs, valyl-tRNA synth 20.4 75 0.0026 28.2 3.4 30 26-55 792-821 (862)
216 2aus_D NOP10, ribosome biogene 20.3 52 0.0018 20.8 1.8 15 22-36 36-50 (60)
217 2v6v_A BUD emergence protein 1 20.3 1.6E+02 0.0056 20.5 4.7 51 38-88 100-150 (156)
218 2wt7_B Transcription factor MA 20.3 1.4E+02 0.0047 20.1 4.0 20 32-51 53-72 (90)
219 3sja_C Golgi to ER traffic pro 20.2 1.1E+02 0.0036 19.7 3.3 21 34-54 32-52 (65)
220 1lwu_C Fibrinogen gamma chain; 20.1 1.1E+02 0.0037 24.5 4.1 25 30-54 29-53 (323)
221 3mud_A DNA repair protein XRCC 20.1 94 0.0032 23.3 3.5 17 35-51 136-152 (175)
No 1
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=96.88 E-value=0.00034 Score=46.36 Aligned_cols=57 Identities=28% Similarity=0.429 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhh--cCCCCcccccCCCCChhh
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFME--ARPDPLLSVTNSPINPIW 89 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLLP~t~g~~~~~W 89 (107)
+-++.+.+|.+++.+|+.||. ++ --++|.+|.+++.|++ +.-||||+--..+.|+.+
T Consensus 14 ~~~~~~~~lr~~veqLr~el~-~~-RikVS~aa~~L~~Yce~~~~~DpLl~g~~~~~NPf~ 72 (73)
T 1got_G 14 EDLTEKDKLKMEVDQLKKEVT-LE-RMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFK 72 (73)
T ss_dssp --CTHHHHHHHHHHHHHHHTT-CC-CCCHHHHHHHHHHHHHHHGGGCHHHHCCCGGGCTTC
T ss_pred cccccHHHHHHHHHHHHHHHC-Cc-hhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCCC
Confidence 334688899999999999984 44 4479999999999999 559999984444456643
No 2
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=88.96 E-value=0.47 Score=32.25 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhc--CCCCcccccCC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEA--RPDPLLSVTNS 83 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves--~pDPLLP~t~g 83 (107)
.++++.+++|++++..|+..+..|+...+--.-|+|.+..+.. ..+=+.|.+.+
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~ 59 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAG 59 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCC
Confidence 4678899999999999999999999988888899999999874 33445666554
No 3
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=87.04 E-value=0.28 Score=32.96 Aligned_cols=51 Identities=27% Similarity=0.469 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhc--CCCCcccccCCCCChh
Q 033950 36 LKRVEQESRFLEEELEELDKTENVSTICDELLKFMEA--RPDPLLSVTNSPINPI 88 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves--~pDPLLP~t~g~~~~~ 88 (107)
|.++.+.+.-|.-|.. ++. -++|.+++||..|++. ..||||.--....|++
T Consensus 15 i~q~rk~VeQLr~Ea~-i~R-ikVSqaaadL~~yc~~~~~~DpLl~Gvp~~~NPF 67 (77)
T 3v5w_G 15 IAQARKLVEQLKMEAN-IDR-IKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF 67 (77)
T ss_dssp HHHHHHHHHHHHHHHS-SCC-CCHHHHHHHHHHHHHHSGGGCTTTSCCCGGGCTT
T ss_pred HHHHHHHHHHHHHHhc-cch-hhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCC
Confidence 3444444444443331 333 3799999999999997 6799984322223554
No 4
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=85.74 E-value=0.94 Score=30.87 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHH
Q 033950 32 ILAELKRVEQESRFLEEELEELDKTENVSTICDELL 67 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~ 67 (107)
++++++.|++|+..|++||+.|.+.+-.-.-|-|++
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~ 47 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDIL 47 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEe
Confidence 678999999999999999999998765444444443
No 5
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=84.62 E-value=1.3 Score=24.81 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 30 HRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+|+..+-.+|.|||.-||=|+.-||
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 5777788899999999999988776
No 6
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=82.76 E-value=0.97 Score=31.01 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
=+..+|+.|+++++.|+.+|..|.+
T Consensus 20 ~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 20 AIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455688899999999999988765
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=78.46 E-value=3 Score=25.30 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
-|+-+||...+++|.-||.-|++||.
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999988875
No 8
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=77.67 E-value=1.7 Score=26.26 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 033950 33 LAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
...|+.|+++|..|+..|+.|+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999988764
No 9
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=77.65 E-value=2.2 Score=33.81 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
|+.++++.+.+||..|++||+.|-.
T Consensus 72 ~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 72 KLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4778899999999999999998854
No 10
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=77.10 E-value=1.9 Score=35.68 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCC--CCccccc
Q 033950 35 ELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARP--DPLLSVT 81 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p--DPLLP~t 81 (107)
-+..+.++|.+|+-|| ..+. -++|.||.+++.+++... ||||.-.
T Consensus 220 ~~~~~r~~veqLk~~l-~~~r-ikvS~~~e~l~~y~e~~~~~DPll~g~ 266 (424)
T 2pbi_A 220 TVTAVRKEIMYYQQAL-MRST-VKSSVSLGGIVKYSEQFSSNDAIMSGC 266 (424)
T ss_dssp CHHHHHHHHHHHHHHH-HSCC-CCHHHHHHHHHHHHHHHGGGCHHHHCC
T ss_pred cHHHHHHHHHHHHHHh-cccc-eeHHHHHHHHHHHHHhhccCCCccccC
Confidence 3466788888998887 3333 479999999999998765 9998543
No 11
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=77.00 E-value=1.7 Score=24.26 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033950 30 HRILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~ 52 (107)
..+-|.+++||.|++-||.|...
T Consensus 4 ykldanvkrlekevgklegevar 26 (28)
T 4dac_A 4 YKLDANVKRLEKEVGKLEGEVAR 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eeccccHHHHHHHHhhhhhhhhh
Confidence 35678899999999999987543
No 12
>3d24_B Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; nuclear receptor, ligand binding domain, DNA- binding, metal-binding, nucleus; 2.11A {Homo sapiens}
Probab=75.95 E-value=1.1 Score=24.86 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.1
Q ss_pred CchhHHhHHHHHhhhcCCCCc
Q 033950 57 ENVSTICDELLKFMEARPDPL 77 (107)
Q Consensus 57 ~~aS~~CkEv~~~Ves~pDPL 77 (107)
++.||-|-||+..+-+.+||+
T Consensus 4 ~~qrRpCtELlKyLTs~~~~~ 24 (26)
T 3d24_B 4 KPQRRPCSELLKYLTTNDDXX 24 (26)
T ss_pred CccCCcHHHHHHHHhcCCccc
Confidence 688999999999999998885
No 13
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=74.40 E-value=3 Score=28.56 Aligned_cols=21 Identities=10% Similarity=0.351 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 033950 35 ELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~ 55 (107)
.|+.|+.+++.|+.+|..|.+
T Consensus 32 ~l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 32 QVEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 367778888888888877764
No 14
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=73.32 E-value=3.9 Score=23.80 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (107)
-|++|..|.++...|++++..||
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999998876
No 15
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=72.84 E-value=4.7 Score=26.16 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
..|-+|..|+.+|.-||.++..|+.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~ 43 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888888888888774
No 16
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=71.79 E-value=5.7 Score=24.22 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=22.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 27 TGKHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 27 ~GKhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.+.|.++-+..|+.++..|+.|-..|.
T Consensus 15 rSR~RKk~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 15 ESRRKKKEYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888889999999999988877664
No 17
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=71.72 E-value=1.7 Score=30.28 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hcCCchhHHhHHHHHhhh-cCCCCcccccCC
Q 033950 30 HRILAELKRVEQESRFLEEELEEL---DKTENVSTICDELLKFME-ARPDPLLSVTNS 83 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L---E~~~~aS~~CkEv~~~Ve-s~pDPLLP~t~g 83 (107)
..+++.+++|++++..|...+..| +.--+-..-+.+.+..+. ...+=|.|.+.+
T Consensus 12 ~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~ 69 (151)
T 2zdi_C 12 EKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAG 69 (151)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCC
Confidence 456788889999999999999988 554444444455555444 333446777654
No 18
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=71.18 E-value=4.4 Score=25.77 Aligned_cols=20 Identities=15% Similarity=0.521 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 033950 34 AELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~L 53 (107)
.++..|.+++..|+..|..|
T Consensus 61 ~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 61 QDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444433
No 19
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=71.05 E-value=3.9 Score=24.29 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 033950 35 ELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~ 55 (107)
.|..|+++|..||..|..|+.
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888764
No 20
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=70.69 E-value=4.2 Score=26.86 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 32 ILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
+..+|+.|+++++-||.+|..|.+.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3457888899999999988887763
No 21
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=68.42 E-value=3.3 Score=28.20 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=29.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 033950 24 TDTTGKHRILAELKRVEQESRFLEEELEELDKTENV 59 (107)
Q Consensus 24 ~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~~~a 59 (107)
|--.-|.+|+++|+.|+++|.--...-+.|++|..|
T Consensus 12 PpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~v 47 (98)
T 2ke4_A 12 PPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDV 47 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567899999999999999888888888887666
No 22
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=66.62 E-value=2.1 Score=29.54 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 33 LAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
...|..|++++..|+.+|..|..+
T Consensus 21 ~~~~~~L~~~~~~l~~~l~~l~~~ 44 (182)
T 1htn_A 21 TKMFEELKSRLDTLSQEVALLKEQ 44 (182)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666777777777777777755
No 23
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=66.60 E-value=5.8 Score=26.39 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 34 AELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
|...+|-.+|++|++||..||.-+
T Consensus 43 atnarL~eq~~lLK~EIRRlERnq 66 (71)
T 3bbp_D 43 ATNAILMEQIKLLKSEIRRLERNQ 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHhhH
Confidence 456789999999999999998754
No 24
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=65.27 E-value=6.6 Score=23.97 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
++..++..|.+|+.-|+++|+.|+.
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888899999999999888763
No 25
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=65.16 E-value=8.7 Score=26.01 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+-+++++|+.|+.++.-|+.++.+++.
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999988863
No 26
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=63.56 E-value=9.2 Score=25.03 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
++.+++..|.++...|+.+|++|.+
T Consensus 63 ~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 63 KLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555566677777777777777764
No 27
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=63.20 E-value=6.8 Score=27.03 Aligned_cols=29 Identities=31% Similarity=0.483 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHhHH
Q 033950 37 KRVEQESRFLEEELEELDKTENVSTICDE 65 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkE 65 (107)
+.|+.||.-|+.|+..||+++.-++..|-
T Consensus 50 ~eL~~EI~~L~~eI~~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKMQNNSKLLRN 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 56888999999999999998877775554
No 28
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=62.88 E-value=7.7 Score=25.12 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033950 32 ILAELKRVEQESRFLEEELE 51 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~ 51 (107)
+++++.+|.+|+..|+.+|+
T Consensus 59 l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 59 AVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444443
No 29
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=62.02 E-value=12 Score=23.05 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 30 HRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L 53 (107)
+|+.+.|+.--+||.-|.+||+.|
T Consensus 26 ~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 26 SKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777788888888888876
No 30
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=61.90 E-value=10 Score=27.61 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcCCchhHHhHHHHHhhhcCCCC
Q 033950 30 HRILAELKRVEQESRFLEEELEEL-DKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L-E~~~~aS~~CkEv~~~Ves~pDP 76 (107)
..++|+|..+.+++.-|..+|+.| +|......+..|-..+=+.+.||
T Consensus 62 k~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~~K~dp 109 (140)
T 1xaw_A 62 KSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSA 109 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 368899999999999999999985 34444444555555543333444
No 31
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=60.69 E-value=13 Score=23.10 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
-..+|..|.+.|..|+-||++|-|
T Consensus 54 ~k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 346789999999999999988754
No 32
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=60.38 E-value=0.82 Score=28.73 Aligned_cols=26 Identities=4% Similarity=0.143 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 32 ILAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
..++|++|++|+..|+.|+.-|.+..
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~ 89 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESC 89 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888877766543
No 33
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=60.13 E-value=11 Score=24.55 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
.+++.+|+.|+++|..|+..| ++.+.
T Consensus 5 e~l~~~~~~l~~~l~~~~~~~-~~~~~ 30 (148)
T 3pbf_A 5 EELQTELYEIKHQILQTMGVL-SLQGS 30 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 578889999999999999999 66544
No 34
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=59.35 E-value=11 Score=25.41 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+-+...+|+-.++.|..|++||.+|+.
T Consensus 58 ~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 58 LGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446778899999999999999999875
No 35
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=58.74 E-value=8.4 Score=23.45 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033950 35 ELKRVEQESRFLEEELEE 52 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~ 52 (107)
.|++|+.+|.-||++|..
T Consensus 13 sV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478899999999988863
No 36
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=57.52 E-value=5.6 Score=28.01 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=36.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhh
Q 033950 26 TTGKHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFM 70 (107)
Q Consensus 26 ~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~V 70 (107)
+.-|.+..|.|..|.+|+..|+++|+.+...=|...---.|++.|
T Consensus 7 ~~~k~~~aa~L~~l~~ql~~l~~~l~~l~~~LP~~~em~~LL~~i 51 (147)
T 2rjz_A 7 FSTKAFQAANLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDI 51 (147)
T ss_dssp HHHTGGGCSSHHHHHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 445778889999999999999999999988877776555666555
No 37
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=57.51 E-value=4.8 Score=29.94 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCccc
Q 033950 44 RFLEEELEELDKTENVSTICDELLKFMEARPDPLLS 79 (107)
Q Consensus 44 ~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP 79 (107)
..|++-|++|+..-+.+.-.+++++|+.+..-.+++
T Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~r~~~~ 257 (270)
T 1j2z_A 222 PSLRESAKLELEEHANNPFVKEICSFILESSRGVAY 257 (270)
T ss_dssp SCHHHHHHHHHHHTSSCHHHHHHHHHHHHCSSCBCC
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHhccCCccC
Confidence 347899999988887788899999999986666655
No 38
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=57.32 E-value=14 Score=33.64 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhc
Q 033950 33 LAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEA 72 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves 72 (107)
.-++++|.+|+..+++||+.|.++.+..-=.++|..|++.
T Consensus 733 ~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~ 772 (803)
T 3qx3_A 733 KEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEE 772 (803)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999998754
No 39
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=54.44 E-value=13 Score=22.65 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 033950 35 ELKRVEQESRFLEEE 49 (107)
Q Consensus 35 el~~LeqEi~fLeeE 49 (107)
.+..|+.++..|+.+
T Consensus 23 ~~~~Le~~v~~L~~~ 37 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQ 37 (62)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 40
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=54.42 E-value=22 Score=20.28 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=24.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 27 TGKHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 27 ~GKhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.++--|.+.+-++|+++..++.-|++|=+
T Consensus 3 ~~~~Sm~~Rl~kVE~qv~~md~KLd~l~~ 31 (33)
T 2ovc_A 3 VDEISMMGRVVKVEKQVQSIEHKLDLLLG 31 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666889999999999999999988754
No 41
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.25 E-value=14 Score=22.89 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 033950 36 LKRVEQESRFLEEELEEL 53 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~L 53 (107)
++.|+++..-|+.++..|
T Consensus 32 ~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 32 CKELEKKNEALKERADSL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 42
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=54.08 E-value=11 Score=23.65 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033950 31 RILAELKRVEQESRFLEEE 49 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeE 49 (107)
|.+-+|-+|++||.-|+.-
T Consensus 3 rQ~EEILRLErEIE~Lqrq 21 (51)
T 2lw9_A 3 KQVEEILRLEKEIEDLQRM 21 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999854
No 43
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=54.03 E-value=17 Score=32.81 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhc
Q 033950 33 LAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEA 72 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves 72 (107)
.-++++|.+|+..++.||+.|.++.+..-=.++|..|++.
T Consensus 706 ~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~ 745 (757)
T 3l4j_A 706 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVG 745 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999753
No 44
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=54.02 E-value=15 Score=23.79 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 30 HRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
-|-+.||+.|=-||+-|+.||..|-
T Consensus 30 ~rTLLEi~KL~LEIQKL~~EL~gls 54 (65)
T 2yf2_A 30 VKTLLEIRKLFLEIQKLKVELQGLS 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchh
Confidence 4677889999999999999988764
No 45
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=53.72 E-value=15 Score=25.11 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033950 31 RILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~ 52 (107)
+...+++.|..+|..||+||+.
T Consensus 93 ~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 93 KEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777764
No 46
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=53.63 E-value=17 Score=23.21 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+++.+++.+.+++.-|+.+++.++
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~~e~~ 35 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQINETQ 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666655543
No 47
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.33 E-value=17 Score=21.98 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 033950 33 LAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~L 53 (107)
...+..|+.+..+|+.+-..|
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L 41 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQL 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 48
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=52.02 E-value=22 Score=22.06 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+.|.++.+..|+.++..|+.|-..|..
T Consensus 25 R~RK~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 25 RARKLQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888877777653
No 49
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=51.49 E-value=19 Score=23.27 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 033950 31 RILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~L 53 (107)
+++.+++.|.++|..|+.+++.+
T Consensus 17 ~l~~~~~~l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 17 SYQQQLQLVVQQKQKVQLELTEA 39 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444
No 50
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=51.15 E-value=17 Score=20.77 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 033950 35 ELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~L 53 (107)
||..|.|||.-|+.|+.-|
T Consensus 3 eiaalkqeiaalkkeiaal 21 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5566677777777666543
No 51
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=50.37 E-value=26 Score=25.24 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhh--------cCCchhHHhHHHHHhhhcCCC
Q 033950 37 KRVEQESRFLEEELEELD--------KTENVSTICDELLKFMEARPD 75 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE--------~~~~aS~~CkEv~~~Ves~pD 75 (107)
++|+.=+.|.++.|.+.+ ++..++..|+||.+-|.+=||
T Consensus 103 ~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sLPD 149 (152)
T 4fla_A 103 RMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 455555566666665444 466788899999999999988
No 52
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=50.34 E-value=16 Score=24.41 Aligned_cols=10 Identities=40% Similarity=0.826 Sum_probs=0.8
Q ss_pred hcCCCCcccc
Q 033950 71 EARPDPLLSV 80 (107)
Q Consensus 71 es~pDPLLP~ 80 (107)
...|++++..
T Consensus 74 ~~~p~~~~~~ 83 (87)
T 1hjb_A 74 KQLPEPLLAS 83 (87)
T ss_dssp HC--------
T ss_pred HHCcHHHhcc
Confidence 3466666643
No 53
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=50.26 E-value=17 Score=24.86 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhhc
Q 033950 39 VEQESRFLEEELEELDK 55 (107)
Q Consensus 39 LeqEi~fLeeEL~~LE~ 55 (107)
|+.+|..|+|||..|-+
T Consensus 88 LE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554433
No 54
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.82 E-value=15 Score=22.56 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 033950 32 ILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~L 53 (107)
-+..+..|+++...|+.+-..|
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555444433
No 55
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=48.86 E-value=22 Score=27.67 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhh-hcCCCCc
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVSTICDELLKFM-EARPDPL 77 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~V-es~pDPL 77 (107)
.+|..|+.||.-|++|+++|-.+-.....-.+|+.-+ +..+|-|
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~ 166 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNF 166 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 3455666667777777777777766666666666543 4444544
No 56
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=48.59 E-value=25 Score=22.18 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 033950 32 ILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~L 53 (107)
++.+++.|+.|+..|+.+...|
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555544444
No 57
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=48.15 E-value=12 Score=24.35 Aligned_cols=19 Identities=53% Similarity=0.807 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 033950 35 ELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~L 53 (107)
+++.++.|+.-|+||++.|
T Consensus 49 evkkveeevkkleeeikkl 67 (67)
T 1lq7_A 49 EVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp THHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHhcC
Confidence 5778888889999888764
No 58
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=47.57 E-value=19 Score=25.97 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 033950 34 AELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~L 53 (107)
.||+.|+|+++-..+|++.|
T Consensus 78 gEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 78 GEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 59
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.47 E-value=24 Score=21.45 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=17.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 25 DTTGKHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 25 d~~GKhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
+..----+++|+..|.+++.-|++++++|
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455666666666666666666655
No 60
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=47.21 E-value=9.7 Score=23.08 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 033950 34 AELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~L 53 (107)
.+++.|++.|..||..|.+|
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555666666665555443
No 61
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=46.16 E-value=21 Score=22.05 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+.|..-||..|+.-++-|++|+..++.
T Consensus 23 ~~~r~DEV~~Le~NLrEL~~ei~~~~~ 49 (51)
T 1yzm_A 23 AAGRMDEVRTLQENLRQLQDEYDQQQT 49 (51)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677999999999999999998873
No 62
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=46.03 E-value=34 Score=19.51 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
|+..++..|+.=++-||+-++.||.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777788877777743
No 63
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=45.91 E-value=16 Score=25.48 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCc
Q 033950 33 LAELKRVEQESRFLEEELEELDKTEN 58 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (107)
.+.++.++++++-|.++++.||+...
T Consensus 137 ~~~~~~l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 137 KAAEEAYTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456688899999999998886543
No 64
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=45.57 E-value=12 Score=29.25 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 033950 35 ELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~ 56 (107)
++..|+.+++-|++|+++||+.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777654
No 65
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.24 E-value=24 Score=21.74 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 033950 32 ILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~L 53 (107)
...+++.|++++.-|+.+-.+|
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L 42 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEAL 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 66
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=45.24 E-value=20 Score=21.51 Aligned_cols=27 Identities=19% Similarity=0.115 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 27 TGKHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 27 ~GKhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
.|-.|=.-+.+++|+++..++++|+.|
T Consensus 105 ~~~~~DITe~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 105 VGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 343444456677788888888888765
No 67
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=44.81 E-value=24 Score=26.37 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCch
Q 033950 33 LAELKRVEQESRFLEEELEELDKTENV 59 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~a 59 (107)
++.|++|..=+.-|+.||.+||+.+.-
T Consensus 3 ~~~l~~~q~l~kele~eL~eLek~p~y 29 (154)
T 4fz4_A 3 MAKVEEVQKVVKELEKELGELDKVPSY 29 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 567999999999999999999998763
No 68
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.75 E-value=25 Score=22.60 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 033950 33 LAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (107)
-..+..|+..+.+|+.+++.|+
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le 90 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554444
No 69
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=44.27 E-value=22 Score=23.72 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCch
Q 033950 34 AELKRVEQESRFLEEELEELDKTENV 59 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~a 59 (107)
+..+.++++++-|.++++.||+....
T Consensus 111 ~~~~~l~~~~~~l~~~l~~le~~~~~ 136 (139)
T 3eff_K 111 AAEEAYTRTTRALHERFDRLERMLDD 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567888889999999998876544
No 70
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=44.08 E-value=27 Score=22.20 Aligned_cols=23 Identities=4% Similarity=0.017 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.--.+..|+..+.+++++++.|+
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le 85 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554
No 71
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=44.04 E-value=32 Score=22.81 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 28 GKHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
|+.++..-|++|++|-.-|+.+++.|
T Consensus 40 G~~KL~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 40 GHQKLEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777766666665555443
No 72
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=44.02 E-value=33 Score=22.01 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 29 KHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
+.|..+.|+.||.++.-|+.+...|
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777665553
No 73
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=43.64 E-value=32 Score=22.26 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 30 HRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L 53 (107)
+|...+++.++..|..|+.||.++
T Consensus 24 ~~~~~~l~~~q~~i~~lE~el~~~ 47 (86)
T 1x8y_A 24 DSLARERDTSRRLLAEKEREMAEM 47 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888888765
No 74
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=43.60 E-value=19 Score=27.41 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=16.7
Q ss_pred CCCCcchh-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 22 GGTDTTGK-------HRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 22 ~~~d~~GK-------hR~~ael~~LeqEi~fLeeEL~~L 53 (107)
..|+..|. +.+..+++.|+++|..++.||.++
T Consensus 214 ~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~ 252 (357)
T 3rrk_A 214 RFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARL 252 (357)
T ss_dssp CCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666673 344445555555555555555443
No 75
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=43.51 E-value=32 Score=23.58 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCc-hhHHhHHHHHhhh
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTEN-VSTICDELLKFME 71 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~-aS~~CkEv~~~Ve 71 (107)
=|..||++|++||.-||.=...+-.+-. |.--=.||..|-+
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3667888999888888865555555443 5545566666643
No 76
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=43.20 E-value=25 Score=22.36 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 033950 34 AELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (107)
.+|..|++-|+.||++|+..+
T Consensus 41 ~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888888877654
No 77
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=43.04 E-value=33 Score=23.22 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 033950 35 ELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~ 55 (107)
.|..++.||..|++|+++|--
T Consensus 46 ~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 46 EIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666543
No 78
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.03 E-value=30 Score=22.69 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 033950 30 HRILAELKRVEQES 43 (107)
Q Consensus 30 hR~~ael~~LeqEi 43 (107)
+.++.+|+.-..||
T Consensus 22 ~eLq~~L~~K~eEL 35 (72)
T 3nmd_A 22 RDLQYALQEKIEEL 35 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444333333
No 79
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=43.02 E-value=26 Score=24.73 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCc
Q 033950 37 KRVEQESRFLEEELEELDKTEN 58 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~ 58 (107)
..+++.|.+|+++|+..+-+++
T Consensus 56 ~~~e~ri~~Le~~L~~a~vid~ 77 (158)
T 1grj_A 56 GFCEGRIKDIEAKLSNAQVIDV 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHEEEECG
T ss_pred HHHHHHHHHHHHHHhhCeecCc
Confidence 3444556666666665554443
No 80
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=42.59 E-value=23 Score=23.13 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+.|..-||..|++-++-|++|+..++.
T Consensus 41 ~~~r~DEV~tLe~NLrEL~~ei~~~q~ 67 (69)
T 1z0k_B 41 AAGRMDEVRTLQENLRQLQDEYDQQQT 67 (69)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677899999999999999988763
No 81
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=42.58 E-value=20 Score=28.71 Aligned_cols=40 Identities=10% Similarity=0.257 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC----------c--hhHHhHHHHHh
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTE----------N--VSTICDELLKF 69 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~----------~--aS~~CkEv~~~ 69 (107)
+-+++.+.+|+++|..||..+.++...- | ..+-|+|+...
T Consensus 31 ~~Lq~~le~L~~KI~~LE~~v~~q~~~~~~~~~~~~~~p~~~~~dC~~i~~~ 82 (323)
T 1lwu_B 31 RSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRN 82 (323)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTSSBCEECCCEESCCBSSHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCHHHHHhc
Confidence 3377788889999999998888765441 1 12478988764
No 82
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.48 E-value=47 Score=27.26 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNSP 84 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g~ 84 (107)
...+.++++.|..+|.-|+++++++|. --.+++..+-..|+|-.|+.+..
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ipN~~~~~vP~g~~e 120 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKK------KIDYYLWRLPNITHPSVPVGKDE 120 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHTTSCCCCCTTSCCCSSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCCCCC
Confidence 356788899999999999999888873 44677778888888888876543
No 83
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=41.95 E-value=21 Score=25.77 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
---++.+.|++++++.-+|+||+..+-..
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~eveg 71 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEKTVEA 71 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEEE
Confidence 35678899999999999999999886443
No 84
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=41.90 E-value=21 Score=22.52 Aligned_cols=19 Identities=5% Similarity=0.412 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 033950 36 LKRVEQESRFLEEELEELD 54 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE 54 (107)
|+.|++++..|++|+++|.
T Consensus 59 I~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7778888888888887775
No 85
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=41.29 E-value=50 Score=27.85 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccCC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNS 83 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g 83 (107)
.-+.++++.|..+|.-|++++.++|. -..+++..+-..|+|=.|+.+.
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~------~~~~~l~~iPN~~~~~vP~g~~ 121 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADK------NLRSKINQVGNIVHESVVDSQD 121 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHTTSCCCCCTTSCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCCCC
Confidence 35677888888888888888877763 4567777888888888897754
No 86
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=41.07 E-value=36 Score=31.64 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhh
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVSTICDELLKFME 71 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (107)
.+++.|.+|..-++.||+.|.++-+..--.+||..|.+
T Consensus 1127 ee~ekL~~E~~e~~~ei~~L~~~s~~~lw~~DLd~~~~ 1164 (1177)
T 4gfh_A 1127 ERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEV 1164 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999887777888877765
No 87
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=40.55 E-value=27 Score=29.80 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (107)
.||+..=.+|.+-+++-+++.++-|||+-.|-....|++..+.+..||
T Consensus 351 ~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~ 398 (496)
T 2nov_A 351 AHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENK 398 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCH
Confidence 688888899999999999999999999988887889999988877765
No 88
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=40.52 E-value=33 Score=23.14 Aligned_cols=22 Identities=23% Similarity=0.361 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 033950 35 ELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~ 56 (107)
|-..|..+|.-|++|+..|...
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~e 68 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKE 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666555433
No 89
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=39.91 E-value=31 Score=21.23 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+++...|+.|+..-..++.|++.|-+
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 56778888888888888888777654
No 90
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=39.75 E-value=38 Score=22.10 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 033950 35 ELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE 54 (107)
+=..|..+|..|+.|+..|-
T Consensus 51 eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 51 ENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555543
No 91
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=39.69 E-value=25 Score=27.48 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 033950 33 LAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (107)
++.|+.||.||.-|+.+|+.++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777776654
No 92
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0
Probab=39.41 E-value=28 Score=25.45 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcc
Q 033950 44 RFLEEELEELDKTENVSTICDELLKFMEARPDPLL 78 (107)
Q Consensus 44 ~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLL 78 (107)
..|+|.|++|+..- .+.--+++++|+.+..-.++
T Consensus 225 ~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~r~~~ 258 (266)
T 3r0s_A 225 GDLKENAKNLLENQ-ESENVKKMCHFILETKRGIP 258 (266)
T ss_dssp SCHHHHHHHHHTTC-CCHHHHHHHHHHHHCSSCCC
T ss_pred CcHHHHHHHHHhhc-CCHHHHHHHHHHHhccCCcC
Confidence 44788888888754 44567899999976544443
No 93
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=39.40 E-value=67 Score=19.85 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
-+...++.|+++|.-|+.-++.|+
T Consensus 43 ~L~~~~~~l~~~i~~L~~~~~~L~ 66 (99)
T 1q08_A 43 IVQERLQEVEARIAELQSMQRSLQ 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444443
No 94
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=39.17 E-value=42 Score=21.48 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 30 HRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L 53 (107)
+|...+++.++..|..|+.+|.++
T Consensus 22 ~~~~~~~~~~q~~i~~lE~eL~~~ 45 (84)
T 1gk4_A 22 ENFAVEAANYQDTIGRLQDEIQNM 45 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777776665
No 95
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=39.11 E-value=27 Score=22.35 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 32 ILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
+.++|++|+.+-.+-|.|++.|.++
T Consensus 23 L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 23 LAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999998887653
No 96
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=39.05 E-value=20 Score=24.50 Aligned_cols=27 Identities=15% Similarity=0.416 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
.++.+.|++++++.-+|+||+..+-..
T Consensus 12 ~mmkqaq~mQ~~m~~~QeeL~~~~v~g 38 (112)
T 1j8b_A 12 GLMKQAQQMQEKMQKMQEEIAQLEVTG 38 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhccEEEE
Confidence 467788999999999999999876443
No 97
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=38.89 E-value=31 Score=22.53 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 033950 28 GKHRILAELKRVEQESRFLEEELEELDKTENVS 60 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS 60 (107)
|.|-...+|+.++.+=.-||+.+..||.-=..|
T Consensus 1 ~~~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 1 GSHNSHMKLQEVEIRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 677788888888777777777777776543333
No 98
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.61 E-value=34 Score=23.56 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.+..+|..|++|..-|.++++.||.
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888888877763
No 99
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=38.55 E-value=14 Score=23.71 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033950 32 ILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~ 52 (107)
++.+++.|+.|...|+.++++
T Consensus 55 Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 55 LQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444443
No 100
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=37.70 E-value=43 Score=21.33 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 033950 36 LKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~~~ 57 (107)
|+.|++++..|++|...|...-
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999888887543
No 101
>2doh_C Fragment, plasminogen-binding group A streptococcal M-like PAM; lysine-binding site, kringle domains, hydrolase; HET: DIO; 2.30A {Homo sapiens} PDB: 2kj4_B 1i5k_C 2doi_C
Probab=37.61 E-value=33 Score=19.38 Aligned_cols=20 Identities=55% Similarity=0.675 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 033950 33 LAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~L 53 (107)
-|+|++|.+| +..++||+.|
T Consensus 7 ~~eL~rLknE-Rh~~~elerl 26 (30)
T 2doh_C 7 DAELQRLKNE-RHEEAELERL 26 (30)
T ss_dssp HHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHH-HHHHHHHHHH
Confidence 4789999887 4566666544
No 102
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=37.54 E-value=34 Score=22.05 Aligned_cols=27 Identities=4% Similarity=0.090 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+.-+...++.|+++|..|+.-++.|+.
T Consensus 76 ~~~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 76 RAHLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777766654
No 103
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=37.40 E-value=54 Score=18.24 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
-|.-||.++.+.|..|-|-|+..|+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~~~ 27 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKIEK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3667899999999999777766553
No 104
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=37.07 E-value=36 Score=20.66 Aligned_cols=23 Identities=26% Similarity=0.124 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 033950 33 LAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
...+..|++.|..||..|..|-.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34788899999999998888754
No 105
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=37.01 E-value=32 Score=29.51 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (107)
.||+..=.+|.+-+++-++++++-|||+-.|-....|++..+.+..||
T Consensus 375 ~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~ 422 (514)
T 2inr_A 375 NHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNK 422 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 688888889999999999999999999888877778888888777664
No 106
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=36.89 E-value=13 Score=25.25 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033950 30 HRILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~ 52 (107)
=|+|-+|--||.++.-||.||.+
T Consensus 61 iRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 61 IRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 37888888888888888888764
No 107
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=36.78 E-value=45 Score=20.53 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 28 GKHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 28 GKhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
|+-=|.+.|.++|+++..++.-|+.|=.
T Consensus 11 ~~~S~~~Rl~rVE~qV~~md~KLd~l~~ 38 (49)
T 3bj4_A 11 GSNTIGARLNRVEDKVTQLDQRLALITD 38 (49)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555788899999999999998888744
No 108
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=36.76 E-value=29 Score=23.32 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
-+.++..|+..+..|+.+|+.+..
T Consensus 14 ~~~~~~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 14 DLEKASALNTKIRALQGSLENMSK 37 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554433
No 109
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=36.72 E-value=36 Score=24.56 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 033950 35 ELKRVEQESRFLEEELEELDKTENVSTI 62 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~~~aS~~ 62 (107)
-++..+.+|..||.||+.++.+-|.+.-
T Consensus 103 ~~~~s~~ri~~lekeL~~i~~~~P~~~m 130 (160)
T 2cly_B 103 FLTQSKTRIQEYEKELEKMRNIIPFDQM 130 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHhC
Confidence 3666778999999999999999988873
No 110
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.58 E-value=33 Score=28.07 Aligned_cols=28 Identities=25% Similarity=0.480 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
+|+.++.+.|++++..+++|++.|...+
T Consensus 42 ~~l~~~~~~l~~~~~~~~~e~~~l~~~~ 69 (405)
T 4b4t_J 42 RRLEAQRNALNDKVRFIKDELRLLQEPG 69 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566667777778888888888776643
No 111
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=36.56 E-value=39 Score=23.87 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=23.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHH
Q 033950 25 DTTGKHRILAELKRVEQESRFLEEEL 50 (107)
Q Consensus 25 d~~GKhR~~ael~~LeqEi~fLeeEL 50 (107)
|.+|+||...=|+..++++.-|-++|
T Consensus 94 ~r~gr~r~y~iV~~ID~kL~eLt~~l 119 (145)
T 2qup_A 94 NRRGRTKIYKIVKEVDRKLLDLTDAV 119 (145)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEeehhHHhHHHHHHHHHH
Confidence 66899999999999999999999876
No 112
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.44 E-value=20 Score=23.30 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 033950 33 LAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.+|.+|.++++.|.+.|++++
T Consensus 41 q~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 41 RLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444333
No 113
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=36.30 E-value=44 Score=22.83 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033950 30 HRILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~ 52 (107)
.+++.+++.|++|+..|+.++-.
T Consensus 35 ~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 35 ERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777766544
No 114
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=35.97 E-value=40 Score=22.41 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033950 32 ILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~ 52 (107)
+.++|..|.+|+.+|.+-|.+
T Consensus 55 Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 55 LQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 115
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=35.96 E-value=35 Score=30.32 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (107)
.||+..=.+|.+-+++-++++++-|||+-.|-....||+..+.+..||
T Consensus 558 ~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~ 605 (692)
T 2xcs_B 558 EHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTD 605 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhCCCH
Confidence 588888888999999999999999999888877888999988887776
No 116
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=35.95 E-value=33 Score=25.52 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 27 TGKHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 27 ~GKhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.|+.+|.+.++.|+++..-|+.+++.|+.
T Consensus 56 ~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 56 IDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777666655
No 117
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.75 E-value=49 Score=21.31 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 033950 33 LAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (107)
.++++.++.+|.-|++++..++
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~ 91 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELE 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554
No 118
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.72 E-value=73 Score=25.74 Aligned_cols=46 Identities=28% Similarity=0.305 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCccccc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVT 81 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t 81 (107)
..+.++++.|..+|+-|++++.++| .-..+++..+-..|+|=.|+.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKE------ARLEALLLQVPLPPWPGAPVG 112 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTCCCCCCTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCCCCCCCCCCC
Confidence 4567788888888888888887776 344667777778888888876
No 119
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=35.61 E-value=31 Score=22.86 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 033950 36 LKRVEQESRFLEEELEEL 53 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~L 53 (107)
+..+..+|.+|+.||..+
T Consensus 21 ~~gv~~~i~~Lk~eL~~m 38 (115)
T 3qfl_A 21 HKGVKKNIEDLGKELESM 38 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHH
Confidence 345566667777666654
No 120
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=35.56 E-value=23 Score=20.11 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
++-+|+.|++|..-+|+++..++.
T Consensus 9 vKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 9 VRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888888888877754
No 121
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.39 E-value=60 Score=19.43 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 033950 34 AELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (107)
.+-..|..+|..|++|+..|.
T Consensus 36 ~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 36 SLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555553
No 122
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=35.10 E-value=50 Score=21.94 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHh
Q 033950 35 ELKRVEQESRFLEEELEELDKTENVSTICDELLKF 69 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~ 69 (107)
+-.+|+.+|..+++|+..|. .-.+-++|+++-
T Consensus 35 EN~~Lh~~ie~~~eEi~~Lk---eEN~~L~el~~~ 66 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLR---KENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44566666666666665443 233344555543
No 123
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.10 E-value=51 Score=22.19 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=16.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVE----QESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~Le----qEi~fLeeEL~~LE~ 55 (107)
+....|+.|- .||.+-++||+.||.
T Consensus 37 kekEqL~~LKkkl~~el~~h~~ei~~le~ 65 (84)
T 1gmj_A 37 RAKEQLAALKKHKENEISHHAKEIERLQK 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554 678888888888765
No 124
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.86 E-value=41 Score=24.85 Aligned_cols=24 Identities=38% Similarity=0.292 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 033950 29 KHRILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~ 52 (107)
..+++.++..|+++|.-|++||+.
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~e 93 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIAL 93 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777766654
No 125
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=34.67 E-value=37 Score=30.32 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (107)
.||+..=.+|.+-+++-+++.++-|||+-.|-....||+..+-+..||
T Consensus 326 ~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iDeVI~iIR~s~~~ 373 (716)
T 1zvu_A 326 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP 373 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhcCch
Confidence 688888899999999999999999999998888889999999888886
No 126
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=34.47 E-value=49 Score=22.29 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033950 31 RILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~ 52 (107)
++..+|..-..||.-||++|+.
T Consensus 48 kl~~el~~h~~ei~~le~~i~r 69 (84)
T 1gmj_A 48 HKENEISHHAKEIERLQKEIER 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555543
No 127
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.37 E-value=63 Score=27.13 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTN 82 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~ 82 (107)
.+.++++.|..+|.-|++++.++| .-..+++..+-..|+|=.|+..
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~------~~l~~~l~~iPN~~~~~vP~g~ 165 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLE------EQFYLRALRLPNQTHPDVPVGD 165 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTSCCCCCTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCCCCCCCCCCCC
Confidence 556777777777777777777765 3445677778888888888763
No 128
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=34.34 E-value=56 Score=20.96 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.-+...++.|+++|.-|+.-++.|+
T Consensus 77 ~~~l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 77 KAALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666665555554
No 129
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=34.15 E-value=32 Score=22.47 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 033950 37 KRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~ 56 (107)
.-||.+|..|++||..|-+.
T Consensus 66 ~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 66 LDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 35778888888888877554
No 130
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.89 E-value=49 Score=22.60 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
++++-+.|++++.-|++.|+.+|.
T Consensus 102 L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 102 LTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666654
No 131
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.75 E-value=46 Score=22.88 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 033950 33 LAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~L 53 (107)
...++.|+++|..|+.-++.|
T Consensus 101 ~~~~~~l~~~i~~L~~~~~~L 121 (148)
T 3gpv_A 101 KQQEANVLQLIQDTEKNLKKI 121 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333
No 132
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=33.48 E-value=62 Score=17.71 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 033950 32 ILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~L 53 (107)
+.-|+-.|.-|++-|++|.+.|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4456777888888888887765
No 133
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=33.18 E-value=41 Score=20.37 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 033950 37 KRVEQESRFLEEELEEL 53 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~L 53 (107)
..|.+||+.||.|+..+
T Consensus 30 ~~L~~ei~~lE~ei~~~ 46 (50)
T 2a26_A 30 DALTAEKSKIETEIKNK 46 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35677788887777754
No 134
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=33.12 E-value=52 Score=23.19 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
++...|.+++++|..|++.++.+|..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (192)
T 2gkw_A 11 RHDQMLSVHDIRLADMDLRFQVLETA 36 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456677788888999889888874
No 135
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.99 E-value=51 Score=26.65 Aligned_cols=48 Identities=25% Similarity=0.400 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccCC
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNS 83 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g 83 (107)
..+.++++.|..+|.-|+++++++|. --.+++..+-..|+|=.|+.+.
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ipN~~~~~vp~g~~ 118 (425)
T 2dq3_A 71 TEIQNRVKELKEEIDRLEEELRKVEE------ELKNTLLWIPNLPHPSVPVGED 118 (425)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTSCCCCCTTSCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCCCCCCCCC
Confidence 34667888888888888888887763 3466777788888888887654
No 136
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=32.95 E-value=48 Score=22.14 Aligned_cols=21 Identities=43% Similarity=0.423 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033950 31 RILAELKRVEQESRFLEEELE 51 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~ 51 (107)
+++.+|+--++||+-|+|.++
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556677777888888887664
No 137
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=32.59 E-value=44 Score=26.12 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CchhHHhHHHHH
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKT--------ENVSTICDELLK 68 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~--------~~aS~~CkEv~~ 68 (107)
...+.+++++|+.||.-|+.+.+.+.+. +.+..-+++.+-
T Consensus 187 ie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~~~LG 234 (315)
T 2ve7_A 187 LESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRLG 234 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHcc
Confidence 5678899999999999999888877763 555555554443
No 138
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=32.33 E-value=39 Score=29.05 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (107)
.||+..=.+|.+-+++-.++.++-|||+-.|-....||+..+-+..||
T Consensus 326 ~~R~evv~rR~~~~L~ka~~R~hileGl~~a~~~iDevI~iIR~s~~~ 373 (500)
T 3lpx_A 326 LHRREVVTRRTIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNR 373 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCH
Confidence 689888899999999999999999999999999999999999999887
No 139
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.25 E-value=35 Score=24.09 Aligned_cols=25 Identities=12% Similarity=0.392 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 29 KHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
|-|++-+..+|..++..|+-++..|
T Consensus 85 REkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777777777666554
No 140
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=32.20 E-value=42 Score=20.78 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 033950 33 LAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
...+..|++.|..||..|.++..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34688899999999988887754
No 141
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.04 E-value=45 Score=22.12 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 033950 34 AELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (107)
.+|.-|++-|+.||+||+.++
T Consensus 44 ~Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666543
No 142
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=31.68 E-value=46 Score=18.91 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 033950 32 ILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~L 53 (107)
|=|.|.++|++|..+-.-|+.+
T Consensus 8 IGaRLnRvE~k~t~MD~kL~~i 29 (31)
T 3hfe_A 8 IGARLNRVEDKVTQLDQRLALI 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4477999999999998888765
No 143
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.53 E-value=51 Score=22.98 Aligned_cols=35 Identities=9% Similarity=0.232 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh--------cCCchhHHhHHHHHh
Q 033950 35 ELKRVEQESRFLEEELEELD--------KTENVSTICDELLKF 69 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE--------~~~~aS~~CkEv~~~ 69 (107)
++..|.+|+.-|+..++.|| ++..+-.-|++..+.
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555444455 344566788887775
No 144
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=31.38 E-value=56 Score=21.02 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 033950 33 LAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~L 53 (107)
..|.+.++..|..||.||.++
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~ 24 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEM 24 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 145
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.28 E-value=60 Score=20.87 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 033950 35 ELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE 54 (107)
.+...++++.-|+.+|..|.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~ 84 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLI 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554
No 146
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.10 E-value=67 Score=21.26 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
|+..+-+.|+..|..|++..++|+.
T Consensus 50 ~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 50 RLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666654
No 147
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=30.93 E-value=50 Score=21.91 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 32 ILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+.++|+.|..+=.-|..||+.||+
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEk 32 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEK 32 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 148
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=30.89 E-value=47 Score=22.41 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.-+...++.|+++|..|+.-++.|+.
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T 1q06_A 82 RRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777776666654
No 149
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.79 E-value=58 Score=26.51 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033950 31 RILAELKRVEQESRFLEEELE 51 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~ 51 (107)
++..++++|++++.+|+-|-+
T Consensus 46 dl~~~lk~le~~~~~L~~e~e 66 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQED 66 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444333
No 150
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=30.67 E-value=49 Score=27.90 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccCCCCChhhHHh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNSPINPIWDRW 92 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g~~~~~WdrW 92 (107)
-+.+.++++.|..+|.-||++|++++ .-.++++..+-..|+|-.|+.....|.--.+|
T Consensus 175 Y~~l~~eV~pLk~eLk~lE~eL~e~e------~eL~~lll~ipN~~~~~vp~g~e~~n~~~~~~ 232 (536)
T 3err_A 175 YADMLKRVEPLRNELQKLEDDAKDNQ------QKLEALLLQVPLPPWPGAPVGGEEANREIKRV 232 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTCCCCCCTTSCCSSGGGCEEEEEE
T ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHH------HHHHHHhcCCCCCCCCCCCCCCCCCCeEEEEe
Confidence 46677788888888888888877765 45677888888889999997633334333344
No 151
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=30.30 E-value=64 Score=23.19 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033950 33 LAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~ 52 (107)
++.++.|+-||.-|.++|+.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888877764
No 152
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=30.10 E-value=56 Score=22.85 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 31 RILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
++...++.+++++.-|++.+..++|-
T Consensus 172 ~l~~~~~~~~~~~~~l~~~~~~~~~~ 197 (203)
T 3qks_A 172 KLSELKKTINNRIKEYRDILARTEGG 197 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 45555666666666666666666654
No 153
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=29.94 E-value=55 Score=22.87 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033950 30 HRILAELKRVEQESRFLE 47 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLe 47 (107)
.+++++|+.|+.+++.|+
T Consensus 10 ~~L~~~i~~l~~~L~~lk 27 (122)
T 3viq_A 10 LKLEKEVRNLQEQLITAE 27 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555554
No 154
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=29.91 E-value=52 Score=27.95 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (107)
.||+..=.+|.+-+++-+++.++-|||+-.|-..-.||+..+.+..|+
T Consensus 337 ~~R~~~~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~ 384 (470)
T 3ilw_A 337 DHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETV 384 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 689888899999999999999999999999988888888888776554
No 155
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=29.33 E-value=47 Score=29.88 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCC
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDP 76 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (107)
.||+..=.+|.+-+++-++++++-|||+-.|-..-.||+..+.+..||
T Consensus 620 ~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iD~vI~iIr~s~~~ 667 (767)
T 2xkj_E 620 EIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP 667 (767)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhccch
Confidence 589988899999999999999999999988888889999999888876
No 156
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.03 E-value=1.1e+02 Score=20.85 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=26.2
Q ss_pred ccCCCCCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 16 SRAAAGGGTDTTGK-HRILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 16 ~~~~~~~~~d~~GK-hR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
+..|++.+|+|..- .-+...|.++++-+..|+.-++.|.+-
T Consensus 2 ~~~~~~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~ 43 (130)
T 2dnx_A 2 SSGSSGQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTK 43 (130)
T ss_dssp CCCCSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34666677777442 334455677777777777777777653
No 157
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.01 E-value=37 Score=23.10 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 33 LAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
..+|..|.+.|+.|+-||+++.++
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 357777888888888887777654
No 158
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=28.69 E-value=41 Score=23.50 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (107)
-++.++.|+-||.-|..+|+...
T Consensus 65 qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 65 QQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888887665
No 159
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.42 E-value=74 Score=21.17 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.+-++|+++=..|..|+.|+++|.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELK 33 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELK 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666664
No 160
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.41 E-value=91 Score=18.88 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 033950 37 KRVEQESRFLEEELEEL 53 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~L 53 (107)
..|..+|..|++|+..|
T Consensus 40 ~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 40 SALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 161
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=28.36 E-value=61 Score=22.08 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFM 70 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~V 70 (107)
-+...|++|..|++-|+.|+++|..-- +...-++++..+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~-a~~~~~~l~~~~ 67 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVI-ADLWADILMERA 67 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhc
Confidence 356789999999999999999988642 333345555443
No 162
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.34 E-value=74 Score=21.54 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.+++++|+.|......||.-|.++|.
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35566666666666666666666554
No 163
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.82 E-value=56 Score=24.99 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 033950 35 ELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE 54 (107)
+|...++||.-|+++|.+++
T Consensus 35 ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 35 KLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555444
No 164
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=27.81 E-value=71 Score=22.94 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033950 30 HRILAELKRVEQESRFLEE 48 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLee 48 (107)
.|..++++.|...|.+|+.
T Consensus 48 ~~~~~~~~~l~~~i~~l~~ 66 (171)
T 2p2u_A 48 ARASQKSAPLLARRKELED 66 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666664
No 165
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.72 E-value=82 Score=21.19 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033950 32 ILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+...|..|+.||..|++|++.|-
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888887773
No 166
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.55 E-value=83 Score=21.40 Aligned_cols=25 Identities=28% Similarity=0.229 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+++++|+.|......||.-|.++|.
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4556666666666666666655554
No 167
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=26.48 E-value=57 Score=20.71 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.|..-||..|++-++-|++|+..+++
T Consensus 31 ~~R~DEV~~Le~NLrEL~~ei~~~~~ 56 (59)
T 1z0j_B 31 CGRLDEVEVLTENLRELKHTLAKQKG 56 (59)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566899999999999999988876
No 168
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=26.46 E-value=54 Score=19.99 Aligned_cols=25 Identities=12% Similarity=0.136 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 29 KHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
+-|..-||..|++-++-|+.|++.+
T Consensus 22 ~~rRfdEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 22 AAGRMDEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcChHHHHHHHHHHHHHHHHHHhh
Confidence 3455678889999999998888754
No 169
>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*
Probab=26.38 E-value=36 Score=24.64 Aligned_cols=29 Identities=7% Similarity=0.075 Sum_probs=20.8
Q ss_pred HHHHHHHHhhc-CCchhHHhHHHHHhhhcC
Q 033950 45 FLEEELEELDK-TENVSTICDELLKFMEAR 73 (107)
Q Consensus 45 fLeeEL~~LE~-~~~aS~~CkEv~~~Ves~ 73 (107)
.|++-|++|+. ..+.+.--+++++|+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 259 (265)
T 4e6u_A 230 TSVQAIDQIKSEILPSVPEAQLLIDSLEQS 259 (265)
T ss_dssp CHHHHHHHHHHHTTTTCGGGHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhcCCCHHHHHHHHHHhhc
Confidence 46778888876 555556678999998653
No 170
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.28 E-value=85 Score=21.49 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 033950 36 LKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~ 55 (107)
++.|++++..|+++++.|+.
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~ 116 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEK 116 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555666655555544
No 171
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=26.16 E-value=1.3e+02 Score=20.56 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 033950 34 AELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+++.+|++-+..|+.-++.+++
T Consensus 94 ~~i~~l~~~l~~l~~~i~~~~~ 115 (146)
T 3hh0_A 94 AEQERIAKVLSHMDEMTKKFQK 115 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444444444444433
No 172
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.11 E-value=9.1 Score=28.98 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVS 60 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS 60 (107)
|-.++.++|||-.|++-|..||.-++....++
T Consensus 156 Ke~l~~~~QRLkdE~rDLk~El~v~~~~~~~~ 187 (189)
T 2v71_A 156 KESLLVSVQRLKDEARDLRQELAVRERQQEVT 187 (189)
T ss_dssp HHHHHCCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 55566677777777777777776666554443
No 173
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=26.10 E-value=90 Score=21.01 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHH
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVSTICDELL 67 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~ 67 (107)
.++..||.+...|+-|++.|- ..-+++.+|+.
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~--~e~~~~~~e~d 79 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLK--QEVSRLARERD 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 345666666666666665554 22333444443
No 174
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=25.66 E-value=79 Score=20.64 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 34 AELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
|+|...+.||.-.|-||+-..|-+
T Consensus 26 aelaafekeiaafeselqaykgkg 49 (73)
T 2a3d_A 26 AELAAFEKEIAAFESELQAYKGKG 49 (73)
T ss_dssp GTHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC
Confidence 478889999999999999887654
No 175
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.43 E-value=82 Score=20.64 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 033950 39 VEQESRFLEEELEELDK 55 (107)
Q Consensus 39 LeqEi~fLeeEL~~LE~ 55 (107)
|.++|..|+.|+..|-|
T Consensus 25 Lq~Ql~~Lq~Ev~~LRG 41 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRG 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444455555544444
No 176
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=25.43 E-value=69 Score=21.02 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 033950 32 ILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~L 53 (107)
+--.|++||+.+.+||-.|.++
T Consensus 50 ln~kL~~lE~~L~iLEAklsSI 71 (73)
T 3pp5_A 50 LNEKLTILDRQVDYLEATFKTV 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3446788888888888877665
No 177
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.08 E-value=87 Score=22.39 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 30 HRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.-+...++.|+++|..|+.-++.|+.
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (278)
T 1r8e_A 82 AFYTEQERQIREKLDFLSALEQTISL 107 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777766666664
No 178
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=24.84 E-value=19 Score=20.64 Aligned_cols=7 Identities=57% Similarity=1.412 Sum_probs=5.4
Q ss_pred CCccccc
Q 033950 100 RGCRCMI 106 (107)
Q Consensus 100 ~~c~cwi 106 (107)
.+|+||-
T Consensus 15 ggcrcwp 21 (33)
T 2knp_A 15 GGCRCWP 21 (33)
T ss_dssp SSCCEEE
T ss_pred Cceeecc
Confidence 5799993
No 179
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=30.71 E-value=15 Score=28.62 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccC
Q 033950 35 ELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTN 82 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~ 82 (107)
+|..|.|+|.-++- =+-+.-+..+-.+||+|+..|... .|.||...
T Consensus 21 AV~~LSq~I~~a~p-eeYv~lVK~VGl~LR~LL~sVDel-~~~Lp~Sa 66 (215)
T 2l6f_A 21 AVIEMSSKIQPAPP-EEYVPMVKEVGLALRTLLATVDES-LPVLPAST 66 (215)
Confidence 66777777776665 234456667888999999999887 78888443
No 180
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.62 E-value=78 Score=23.97 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 033950 36 LKRVEQESRFLEEELEEL 53 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~L 53 (107)
++.|+++|.-|+.+|+++
T Consensus 228 l~~l~~~i~~l~~~l~~~ 245 (357)
T 3rrk_A 228 AARMKERARLAPEELVGI 245 (357)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555544
No 181
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.54 E-value=38 Score=27.34 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 033950 33 LAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.++..|+++|..++.|+++++
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 16 KEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 182
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=24.43 E-value=85 Score=22.93 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=26.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033950 24 TDTTGKHRILAELKRVEQESRFLEEELEELDKT 56 (107)
Q Consensus 24 ~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (107)
|.+-=-+|+..-|+.++..|..++.+|+.|+.+
T Consensus 376 Ppl~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~ 408 (425)
T 1yf2_A 376 PPLEEQKQIAKILSSVDKSIELKKQKKEKLQRM 408 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556788888999999999999999888654
No 183
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=24.42 E-value=27 Score=23.23 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC----C-chhHHhHHHHHhhhcCCCCc
Q 033950 33 LAELKRVEQESRFLEEELEELDKT----E-NVSTICDELLKFMEARPDPL 77 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~----~-~aS~~CkEv~~~Ves~pDPL 77 (107)
...+..|++|=.|.=.-|..+|-+ . .-...|+.|...+=+.-|=+
T Consensus 14 k~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~ILYaTeegf 63 (82)
T 3tq7_B 14 KLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEGF 63 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhccccCC
Confidence 334445555555544445454432 1 11124555555554444433
No 184
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.17 E-value=68 Score=25.85 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 033950 35 ELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~L 53 (107)
+|..|++++..|+++++++
T Consensus 11 ~~~~l~~~~~~l~~~~~~~ 29 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDT 29 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 185
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=24.16 E-value=1e+02 Score=20.44 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
|...++..++..|..||.||.++-
T Consensus 34 ~~~~e~~~~q~~i~~lE~eL~~~r 57 (95)
T 3mov_A 34 LLAKEKDNSRRMLTDKEREMAEIR 57 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777776653
No 186
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.82 E-value=13 Score=28.32 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=25.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhc
Q 033950 25 DTTGKHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEA 72 (107)
Q Consensus 25 d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves 72 (107)
++....++..|.++|.+|+..|+.++.+++-+..=-.-.++++.+-..
T Consensus 17 ~~~~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~~~ 64 (255)
T 2j5u_A 17 GVVDLKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITDS 64 (255)
T ss_dssp ---------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 333444555666777777777777666666665555556777776654
No 187
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=23.59 E-value=65 Score=22.58 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCccc
Q 033950 27 TGKHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLS 79 (107)
Q Consensus 27 ~GKhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP 79 (107)
.--|-....|..+++.|.-|+..|+++++--.+-.+ ...-+-..|.|..|
T Consensus 25 ~QL~~v~~~v~~~~~~in~L~~~I~~~~k~a~aGiA---~A~A~A~LPq~~~p 74 (129)
T 2gr7_A 25 SQLYAVAKGVTNLAGQVNNLEGKVNKVGKRADAGTA---SALAASQLPQATMP 74 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTCCCCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCCCcccCC
Confidence 333444556777888888888888887764332221 12233455766666
No 188
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.39 E-value=88 Score=18.44 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 033950 35 ELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~~L 53 (107)
+|.+|+.+...|++|-.+|
T Consensus 16 Qi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 16 QILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776554
No 189
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=23.32 E-value=1e+02 Score=21.86 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
++.+..++..|+++|.-|+.|-+.++
T Consensus 16 ~~~L~~~~r~Ldr~~~kle~~ekk~~ 41 (179)
T 2gd5_A 16 SLKIRKEMRVVDRQIRDIQREEEKVK 41 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667778888888877776664
No 190
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.26 E-value=1.4e+02 Score=25.00 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=32.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccCCC
Q 033950 33 LAE-LKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNSP 84 (107)
Q Consensus 33 ~ae-l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g~ 84 (107)
.++ .+.|..+|.-|++++.++|. --.+++..+-..|+|-.|+.+..
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~------~~~~~l~~iPN~~~~~vP~g~~e 155 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEE------ERDKLMLNVGNILHESVPIAQDE 155 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHTTCCCCCCTTSCCCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCCCCc
Confidence 455 66677777777777776653 44577778888888888877654
No 191
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.18 E-value=80 Score=23.43 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=17.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 033950 25 DTTGKHRILAELKRVEQESRFLEEELEE 52 (107)
Q Consensus 25 d~~GKhR~~ael~~LeqEi~fLeeEL~~ 52 (107)
+.+=-+-++.+|..++++|.+|++++.+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666777777777777766543
No 192
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=23.03 E-value=87 Score=21.21 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFME 71 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (107)
+.|+..++..|++ ||++| +.+++..... .-+++++.+.
T Consensus 68 ~~Rl~~a~~~L~~---~l~~e-~~~~~~ee~~-~Ake~l~~a~ 105 (108)
T 1h7c_A 68 QRRLEAAYLDLQR---ILENE-KDLEEAEEYK-EARLVLDSVK 105 (108)
T ss_dssp HHHHHHHHHHHHH---HHHHC-GGGTTSHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHhc-ccCCCcHHHH-HHHHHHHHHH
Confidence 4577777777776 33433 3444443332 2355555443
No 193
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=22.61 E-value=59 Score=23.58 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=29.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhh
Q 033950 25 DTTGKHRILAELKRVEQESRFLEEELEELDKTENVSTICDELLKFME 71 (107)
Q Consensus 25 d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (107)
+..+.|+...+-+.|-+-++-++..+..+++|=.--+-|.+|+.-+-
T Consensus 40 ~~~~~~g~~~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~Qla 86 (136)
T 4adz_A 40 HDRGVHGYHKQKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVS 86 (136)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33555666666677777777777777777777777788999987654
No 194
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=22.51 E-value=1e+02 Score=21.28 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 32 ILAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
++..++.++++|..|++.++. ||+.
T Consensus 52 L~~~~~~~~~~i~~l~~~~~~-~g~p 76 (171)
T 2rbd_A 52 IDEAIQAMQDENHQLEELLRS-NGVG 76 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-CCCC
Confidence 444567777788888777754 5554
No 195
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.45 E-value=74 Score=20.05 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 033950 33 LAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (107)
..+=++|+|++.|++.-=++||
T Consensus 25 e~~Q~~ldq~Ld~Ie~QQ~ELe 46 (64)
T 3t97_C 25 KLDQKRLDQELDFILSQQKELE 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666655444443
No 196
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.39 E-value=88 Score=25.01 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-----------C-chhHHhHHHHH
Q 033950 30 HRILAELKRVEQESRFLEEELEELDKT-----------E-NVSTICDELLK 68 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~-----------~-~aS~~CkEv~~ 68 (107)
+.++..|+.++.+|..|++.+.+|+.. . ..-+-|.|+..
T Consensus 21 ~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~~~~~~~~~~~~~~sC~~i~~ 71 (319)
T 1fzc_C 21 RYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIAN 71 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCEESCCCCSCCBSSHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCHHHHHh
Confidence 556677778888888888777777641 0 12357888765
No 197
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=22.38 E-value=1.4e+02 Score=18.18 Aligned_cols=37 Identities=8% Similarity=-0.017 Sum_probs=28.5
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 19 AAGGGTDTTGKHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 19 ~~~~~~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
..|-+.|+-.-...+.+.+.|+.+|.-.+..++.+..
T Consensus 28 ~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~ 64 (118)
T 3uul_A 28 QDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQ 64 (118)
T ss_dssp SCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455668888888888888899999888887777643
No 198
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.15 E-value=1.5e+02 Score=20.79 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=31.9
Q ss_pred cchhHHH-HHHHHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCc
Q 033950 26 TTGKHRI-LAELKRVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPL 77 (107)
Q Consensus 26 ~~GKhR~-~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPL 77 (107)
|-|..|+ ++.|+.|+.||.-.|..|- .|..-.|+-..-+|..||++
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~~~E~QL~------iArQKLkdAe~~~E~DPDev 72 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENITAHEQQLV------TARQKLKDAEKAVEVDPDDV 72 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCCcHH
Confidence 4466554 5777877777777776654 24446777788888888875
No 199
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=22.10 E-value=88 Score=26.81 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC--Cch---hHHhHHHHHhhhcCCCC
Q 033950 34 AELKRVEQESRFLEEELEELDKT--ENV---STICDELLKFMEARPDP 76 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~--~~a---S~~CkEv~~~Ves~pDP 76 (107)
.++.+|++|+..|++|++.|+.+ .+. ...-+|+.+..+.-.||
T Consensus 454 ~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~ 501 (514)
T 2inr_A 454 TDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 501 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 36788888888888888888887 332 33667777777766665
No 200
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=21.94 E-value=1.3e+02 Score=20.08 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
|--+.|.|..|..|-..|++||+++.
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34466788888888888888887764
No 201
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=21.92 E-value=65 Score=25.05 Aligned_cols=16 Identities=44% Similarity=0.758 Sum_probs=13.8
Q ss_pred CchhHHhHHHHHhhhc
Q 033950 57 ENVSTICDELLKFMEA 72 (107)
Q Consensus 57 ~~aS~~CkEv~~~Ves 72 (107)
+-.|+-|++|.+|+|+
T Consensus 312 ~~~~~~~~~~~~~~~~ 327 (339)
T 3rty_A 312 QEVSRRCQALASFMET 327 (339)
T ss_dssp TTTTSSCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3478899999999986
No 202
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=21.90 E-value=87 Score=20.35 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=22.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 033950 23 GTDTTGKHRILAELKRVEQESRFLEEELEEL 53 (107)
Q Consensus 23 ~~d~~GKhR~~ael~~LeqEi~fLeeEL~~L 53 (107)
..|++.- +-..+..|+++++-..+.|++-
T Consensus 67 ~~d~yaA--ID~a~dkLerQLrK~K~k~~~~ 95 (101)
T 3v26_X 67 GQDMYAA--IDGLIDKLARQLTKHKDKLKQH 95 (101)
T ss_dssp CSSSSHH--HHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 4566643 5568899999999999999874
No 203
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.84 E-value=72 Score=23.67 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 033950 36 LKRVEQESRFLEEELEELD 54 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE 54 (107)
++.|.+||.+++.++..+|
T Consensus 92 ~~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 204
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.73 E-value=74 Score=20.58 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 033950 37 KRVEQESRFLEEELEELD 54 (107)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE 54 (107)
+.|.+|++.||.+|..|.
T Consensus 37 ~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 37 SSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 346778888887777664
No 205
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.68 E-value=1.2e+02 Score=20.71 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 29 KHRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 29 KhR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.-+...++.|+++|.-|+.-++.|+
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~ 108 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLD 108 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 206
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=21.63 E-value=51 Score=21.94 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=12.9
Q ss_pred hhHHhHHHHHhhhcCCCCc
Q 033950 59 VSTICDELLKFMEARPDPL 77 (107)
Q Consensus 59 aS~~CkEv~~~Ves~pDPL 77 (107)
|..-.++-..-++..||++
T Consensus 24 A~QKLkdA~~~~e~DPDev 42 (78)
T 2ic6_A 24 TRQKLKDAERAVELDPDDV 42 (78)
T ss_dssp HHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHhcCCCcHH
Confidence 3335666777788888875
No 207
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=21.13 E-value=1.4e+02 Score=17.53 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 31 RILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (107)
.++.+|..-+.||..|++|=++|-
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456677777888888888776663
No 208
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=21.00 E-value=1.1e+02 Score=22.33 Aligned_cols=35 Identities=11% Similarity=0.305 Sum_probs=28.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 033950 23 GTDTTGKHRILAELKRVEQESRFLEEELEELDKTE 57 (107)
Q Consensus 23 ~~d~~GKhR~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (107)
.|.+-=-+||.+-|..++.-|..++..++.|+.+.
T Consensus 165 lPpl~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k 199 (425)
T 1yf2_A 165 LPPLEEQKQIAKILTKIDEGIEIIEKSINKLERIK 199 (425)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566678899999999999999998888887554
No 209
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Probab=20.87 E-value=46 Score=23.89 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=19.1
Q ss_pred HHHHHHHHhhcCCchhHHhHHHHHhhhcC
Q 033950 45 FLEEELEELDKTENVSTICDELLKFMEAR 73 (107)
Q Consensus 45 fLeeEL~~LE~~~~aS~~CkEv~~~Ves~ 73 (107)
.|++-|++|+.+.+-+.--+++++|+.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (262)
T 2qia_A 228 TLDEVKPEIAELAETYPEVKAFTDFFARS 256 (262)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHC
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 35666666666544455567888888864
No 210
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=20.70 E-value=51 Score=20.75 Aligned_cols=15 Identities=27% Similarity=0.167 Sum_probs=11.7
Q ss_pred CCCCcchhHHHHHHH
Q 033950 22 GGTDTTGKHRILAEL 36 (107)
Q Consensus 22 ~~~d~~GKhR~~ael 36 (107)
++-|.+||||+..+-
T Consensus 37 Sp~Dky~~yR~~~kk 51 (60)
T 2apo_B 37 SLEDRWGKYRRMLKR 51 (60)
T ss_dssp CTTCTTHHHHHHHHH
T ss_pred CCCcchHHHHHHHHH
Confidence 466999999987653
No 211
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.68 E-value=94 Score=21.83 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033950 34 AELKRVEQESRFLEEELE 51 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~ 51 (107)
.+++.++.||.-|..||.
T Consensus 82 ~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 212
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.63 E-value=85 Score=19.16 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhh
Q 033950 36 LKRVEQESRFLEEELEELDKTENVSTICDELLKFME 71 (107)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (107)
+.+|++|+..||.|-+.|-+- .--=|+++.++|
T Consensus 5 vaqlenevaslenenetlkkk---nlhkkdliayle 37 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKK---NLHKKDLIAYLE 37 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHh---cccHHHHHHHHH
Confidence 567889999888876655432 222355555554
No 213
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.53 E-value=94 Score=23.71 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 31 RILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
.++.|+..|.+++.-.++|++.|..
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888887543
No 214
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.41 E-value=1.3e+02 Score=20.90 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHhH
Q 033950 34 AELKRVEQESRFLEEELEELDKTENVSTICD 64 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~Ck 64 (107)
..|.+|.+||.-|..||+.+ ...+.+.+-
T Consensus 15 ~~Ie~Lkreie~lk~ele~l--~~E~q~~v~ 43 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENM--KTESQRVVL 43 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 45666777777777776666 334444433
No 215
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=20.41 E-value=75 Score=28.18 Aligned_cols=30 Identities=17% Similarity=0.064 Sum_probs=22.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033950 26 TTGKHRILAELKRVEQESRFLEEELEELDK 55 (107)
Q Consensus 26 ~~GKhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (107)
+-|.--+.+++++|+.++..|+.||+.+++
T Consensus 792 ~~~~~d~~~~~~rl~k~~~~~~~~~~~~~~ 821 (862)
T 1gax_A 792 LEGLLDVEEWRRRQEKRLKELLALAERSQR 821 (862)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444577888888888888888888876
No 216
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=20.32 E-value=52 Score=20.76 Aligned_cols=15 Identities=20% Similarity=0.116 Sum_probs=11.8
Q ss_pred CCCCcchhHHHHHHH
Q 033950 22 GGTDTTGKHRILAEL 36 (107)
Q Consensus 22 ~~~d~~GKhR~~ael 36 (107)
++-|.+||||+...-
T Consensus 36 SP~Dky~~yR~~lKk 50 (60)
T 2aus_D 36 SPEDPYGEYRRRLKR 50 (60)
T ss_dssp CSCCTTHHHHHHHHH
T ss_pred CCCCchHHHHHHHHH
Confidence 467999999987653
No 217
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=20.31 E-value=1.6e+02 Score=20.51 Aligned_cols=51 Identities=6% Similarity=-0.058 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhHHhHHHHHhhhcCCCCcccccCCCCChh
Q 033950 38 RVEQESRFLEEELEELDKTENVSTICDELLKFMEARPDPLLSVTNSPINPI 88 (107)
Q Consensus 38 ~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g~~~~~ 88 (107)
.+++-..-|+.=|+.|=.+++--.-|..|.+|...+++-+-|....+.|-+
T Consensus 100 ~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~~~~~~~~~~~~ 150 (156)
T 2v6v_A 100 ITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNNGFDREFERDENGS 150 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCSSSSCEEECC-----
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCCcccccccccCcCCc
Confidence 456666788888888989998778899999999999998888777666543
No 218
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.29 E-value=1.4e+02 Score=20.09 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033950 32 ILAELKRVEQESRFLEEELE 51 (107)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~ 51 (107)
+..++..|.+|+..|..|+.
T Consensus 53 LE~e~~~L~~e~~~L~~e~~ 72 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVS 72 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 219
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=20.17 E-value=1.1e+02 Score=19.69 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 033950 34 AELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (107)
|.=.+|+|.+.-|-+||+.+-
T Consensus 32 AKWaKL~Rk~DKl~~ele~l~ 52 (65)
T 3sja_C 32 AKWTKNNRKLDSLDKEINNLK 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777653
No 220
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.09 E-value=1.1e+02 Score=24.49 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033950 30 HRILAELKRVEQESRFLEEELEELD 54 (107)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (107)
+.++..|+.++..|..|++.|.+|+
T Consensus 29 ~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 29 QELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666555555
No 221
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.07 E-value=94 Score=23.30 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033950 35 ELKRVEQESRFLEEELE 51 (107)
Q Consensus 35 el~~LeqEi~fLeeEL~ 51 (107)
.++.|+++|.-||++|.
T Consensus 136 tV~kLqkeiD~LEDeL~ 152 (175)
T 3mud_A 136 TTAKNEKSIDDLEEKVA 152 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788888888888874
Done!