BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033951
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q45|A Chain A, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|1Q45|B Chain B, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|2G5W|A Chain A, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2G5W|B Chain B, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2Q3O|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
pdb|2Q3O|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
Length = 391
Score = 79.3 bits (194), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/46 (76%), Positives = 39/46 (84%)
Query: 57 LAPMTRCRALNGIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
LAPMTRCRALNG+P ALA YY QR+TPGGFLISEGT VSP + G+
Sbjct: 29 LAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGSAGF 74
>pdb|3HGO|A Chain A, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
pdb|3HGO|B Chain B, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
Length = 402
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 57 LAPMTRCRALNGIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
LAPMTRCRALN IP AL YY+QR+T GGFLI+EGT +SPT+ GY
Sbjct: 35 LAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPTSAGY 80
>pdb|2HS8|A Chain A, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
pdb|2HS8|B Chain B, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
Length = 402
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 38/46 (82%)
Query: 57 LAPMTRCRALNGIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
LAPMTRCRALN IP AL YY+QR+T GGFLI+EGT +SPT+ G+
Sbjct: 35 LAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPTSAGF 80
>pdb|2HS6|A Chain A, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HS6|B Chain B, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HSA|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|2HSA|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|3HGS|A Chain A, Crystal Structure Of Tomato Opr3 In Complex With Phb
pdb|3HGS|B Chain B, Crystal Structure Of Tomato Opr3 In Complex With Phb
Length = 402
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 38/46 (82%)
Query: 57 LAPMTRCRALNGIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
LAPMTRCRALN IP AL YY+QR+T GGFLI+EGT +SPT+ G+
Sbjct: 35 LAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPTSAGF 80
>pdb|1VJI|A Chain A, Gene Product Of At1g76680 From Arabidopsis Thaliana
pdb|2Q3R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g76680 From Arabidopsis Thaliana
Length = 372
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 33/46 (71%)
Query: 57 LAPMTRCRALNGIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
LAP+TR R+ +P P A YY QR+TPGGFLI+E T VS TA GY
Sbjct: 29 LAPLTRQRSYGNVPQPHAAIYYSQRTTPGGFLITEATGVSDTAQGY 74
>pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICP|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICQ|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICQ|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICS|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|1ICS|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|3HGR|A Chain A, Crystal Structure Of Tomato Opr1 In Complex With Phb
pdb|3HGR|B Chain B, Crystal Structure Of Tomato Opr1 In Complex With Phb
Length = 376
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 57 LAPMTRCRALNGIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
LAP+TR R+ IP P +Y QRST GG LI E T +S T GY
Sbjct: 33 LAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGY 78
>pdb|4AB4|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AB4|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
Length = 362
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 57 LAPMTRCRALNG-IPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TRCRA G +P +A YY QR++ G ++SE T+VSP GY
Sbjct: 21 MAPLTRCRADEGRVPNALMAEYYVQRAS-AGLILSEATSVSPMGVGY 66
>pdb|2R14|A Chain A, Structure Of Morphinone Reductase In Complex With
Tetrahydronad
Length = 377
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 57 LAPMTRCRALNGIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R + +PG YY QR++ G +ISE T +SPTA GY
Sbjct: 28 MAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEATNISPTARGY 72
>pdb|3GX9|A Chain A, Structure Of Morphinone Reductase N189a Mutant In Complex
With Tetrahydronad
Length = 377
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 57 LAPMTRCRALNGIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R + +PG YY QR++ G +ISE T +SPTA GY
Sbjct: 28 MAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEATNISPTARGY 72
>pdb|1GWJ|A Chain A, Morphinone Reductase
Length = 377
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 57 LAPMTRCRALNGIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R + +PG YY QR++ G +ISE T +SPTA GY
Sbjct: 28 MAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEATNISPTARGY 72
>pdb|2GOU|A Chain A, Structure Of Wild Type, Oxidized Sye1, An Oye Homologue
From S. Oneidensis
pdb|2GQ8|A Chain A, Structure Of Sye1, An Oye Homologue From S. Ondeidensis,
In Complex With P-Hydroxyacetophenone
pdb|2GQ9|A Chain A, Structure Of Sye1, An Oye Homologue From S. Oneidensis, In
Complex With P-Hydroxybenzaldehyde
pdb|2GQA|A Chain A, Structure Of Nadh-Reduced Sye1, An Oye Homologue From S.
Oneidensis
Length = 365
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+ PMTR RA + +A YY QR++ G ++SEGT +SPTA GY
Sbjct: 22 MPPMTRSRASQPGDVANHMMAIYYAQRAS-AGLIVSEGTQISPTAKGY 68
>pdb|3P8I|A Chain A, Y351f Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R++ IP P + YY+QR++ G +ISE T +S A GY
Sbjct: 23 MAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGY 69
>pdb|2ABB|A Chain A, Structure Of Petn Reductase Y186f In Complex With Cyanide
Length = 364
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R++ IP P + YY+QR++ G +ISE T +S A GY
Sbjct: 22 MAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGY 68
>pdb|3P8J|A Chain A, Y351s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R++ IP P + YY+QR++ G +ISE T +S A GY
Sbjct: 23 MAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGY 69
>pdb|3P84|A Chain A, Y351a Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R++ IP P + YY+QR++ G +ISE T +S A GY
Sbjct: 23 MAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGY 69
>pdb|3P74|A Chain A, H181n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal His8-Tag
Length = 373
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R++ IP P + YY+QR++ G +ISE T +S A GY
Sbjct: 23 MAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGY 69
>pdb|3P82|A Chain A, H184n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing Bound Acetate Ion
Length = 365
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R++ IP P + YY+QR++ G +ISE T +S A GY
Sbjct: 23 MAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGY 69
>pdb|3P7Y|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure With Bound
(E)-1-(2'-Hydroxyphenyl)-2-Nitroethene
pdb|3P80|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing Bound
(E)-1-(3'-Hydroxyphenyl)-2-Nitroethene
pdb|3P81|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing A Bound
(E)-1-(4'-Hydroxyphenyl)-2-Nitroethene Molecule
Length = 365
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R++ IP P + YY+QR++ G +ISE T +S A GY
Sbjct: 23 MAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGY 69
>pdb|3P62|A Chain A, Wild-Type Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal 8-Histidine Tag
Length = 373
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R++ IP P + YY+QR++ G +ISE T +S A GY
Sbjct: 23 MAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGY 69
>pdb|1H50|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexes
pdb|1H60|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Progesterone
pdb|1H61|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Prednisone
pdb|1H62|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With 1,4-Androstadien-3,17-Dione
pdb|1H63|A Chain A, Structure Of The Reduced Pentaerythritol Tetranitrate
Reductase
pdb|1GVO|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4 Dinitrophenol
pdb|1GVQ|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Cyclohexanone
pdb|1GVR|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4,6 Trinitrotoluene
pdb|1GVS|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Picric Acid
pdb|1H51|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase And
Complexes
pdb|1VYR|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase
Complexed With Picric Acid
pdb|2ABA|A Chain A, Structure Of Reduced Petn Reductase In Complex With
Progesterone
pdb|3F03|K Chain K, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1-Nitrocyclohexene
pdb|3KFT|A Chain A, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
pdb|3KFT|B Chain B, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
Length = 364
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R++ IP P + YY+QR++ G +ISE T +S A GY
Sbjct: 22 MAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGY 68
>pdb|1VYP|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102f
Mutant And Complexed With Picric Acid
Length = 364
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R++ IP P + YY+QR++ G +ISE T +S A GY
Sbjct: 22 MAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGY 68
>pdb|1VYS|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102y
Mutant And Complexed With Picric Acid
Length = 364
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR R++ IP P + YY+QR++ G +ISE T +S A GY
Sbjct: 22 MAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGY 68
>pdb|3P67|A Chain A, T26s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 373
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 57 LAPMTRCRALN--GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP++R R++ IP P + YY+QR++ G +ISE T +S A GY
Sbjct: 23 MAPLSRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISAQAKGY 69
>pdb|3TJL|A Chain A, Crystal Structure Of A Novel Oye From The
Xylose-Fermenting Fungus P. Stipitis
pdb|3UPW|A Chain A, Pichia Stipitis Oye2.6 Complexed With Nicotinamide
Length = 407
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 59 PMTRCRAL-NGIPGPALATYYQQRST-PGGFLISEGTAVSPTAPGY 102
P TR RAL + P YY RST PG LI+E T VSP A GY
Sbjct: 33 PTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGY 78
>pdb|4DF2|A Chain A, P. Stipitis Oye2.6 Complexed With P-Chlorophenol
Length = 407
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 59 PMTRCRAL-NGIPGPALATYYQQRST-PGGFLISEGTAVSPTAPGY 102
P TR RAL + P YY RST PG LI+E T VSP A GY
Sbjct: 33 PTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGY 78
>pdb|3TXZ|A Chain A, Oye1-W116q Complexed With R-Carvone
Length = 400
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 57 LAPMTRCRALN--GIPGPALAT-YYQQRST-PGGFLISEGTAVSPTAPGY 102
+ P+TR RAL+ IP A YY QR+ PG +I+EG +SP A GY
Sbjct: 34 IPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGY 83
>pdb|4GE8|A Chain A, Oye1-W116i Complexed With (S)-Carvone
Length = 400
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 57 LAPMTRCRALN--GIPGPALAT-YYQQRST-PGGFLISEGTAVSPTAPGY 102
+ P+TR RAL+ IP A YY QR+ PG +I+EG +SP A GY
Sbjct: 34 IPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGY 83
>pdb|3RND|A Chain A, W116i-Oye1 Complexed With
2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 399
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 57 LAPMTRCRALN--GIPGPALAT-YYQQRST-PGGFLISEGTAVSPTAPGY 102
+ P+TR RAL+ IP A YY QR+ PG +I+EG +SP A GY
Sbjct: 33 IPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGY 82
>pdb|4GWE|A Chain A, W116l-Oye1 Complexed With (R)-Carvone
pdb|4GXM|A Chain A, Oye1-W116l In Complex With Aromatic Product Of R-Carvone
Dismutation
Length = 400
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 57 LAPMTRCRALN--GIPGPALAT-YYQQRST-PGGFLISEGTAVSPTAPGY 102
+ P+TR RAL+ IP A YY QR+ PG +I+EG +SP A GY
Sbjct: 34 IPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGY 83
>pdb|1K02|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
pdb|1K03|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
Complexed With Para-Hydroxy Benzaldehyde
Length = 399
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 57 LAPMTRCRALN--GIPGPALAT-YYQQRST-PGGFLISEGTAVSPTAPGY 102
+ P+TR RAL+ IP A YY QR+ PG +I+EG +SP A GY
Sbjct: 33 IPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGY 82
>pdb|4GBU|A Chain A, Oye1-W116a In Complex With Aromatic Product Of S-Carvone
Dismutation
Length = 400
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 57 LAPMTRCRALN--GIPGPALAT-YYQQRST-PGGFLISEGTAVSPTAPGY 102
+ P+TR RAL+ IP A YY QR+ PG +I+EG +SP A GY
Sbjct: 34 IPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGY 83
>pdb|1OYA|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYB|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYC|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|3TX9|A Chain A, Oye1 Complexed With 2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 400
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 57 LAPMTRCRALN--GIPGPALAT-YYQQRST-PGGFLISEGTAVSPTAPGY 102
+ P+TR RAL+ IP A YY QR+ PG +I+EG +SP A GY
Sbjct: 34 IPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGY 83
>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h
Length = 399
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 57 LAPMTRCRALN--GIPGPALAT-YYQQRST-PGGFLISEGTAVSPTAPGY 102
+ P+TR RAL+ IP A YY QR+ PG +I+EG +SP A GY
Sbjct: 33 IPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGY 82
>pdb|1BWK|A Chain A, Old Yellow Enzyme (Oye1) Mutant H191n
Length = 399
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 57 LAPMTRCRALN--GIPGPALAT-YYQQRST-PGGFLISEGTAVSPTAPGY 102
+ P+TR RAL+ IP A YY QR+ PG +I+EG +SP A GY
Sbjct: 33 IPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGY 82
>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
pdb|4A3U|B Chain B, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
Length = 358
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 57 LAPMTRCRAL-NGIPGPALATYYQQRSTPGGFLISEGTAVS------PTAPGYFRNS 106
+AP+TR RA + +P +A YY QR++ G +ISE T +S P APG + ++
Sbjct: 21 MAPLTRGRATRDHVPTEIMAEYYAQRAS-AGLIISEATGISQEGLGWPYAPGIWSDA 76
>pdb|3GKA|A Chain A, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
pdb|3GKA|B Chain B, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
Length = 361
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 57 LAPMTRCRALN-GIPGPALATYYQQRSTPGGFLISEGTAVSPTAPGY 102
+AP+TR RA + P +A YY +R++ G +ISE T+V+P GY
Sbjct: 29 MAPLTRARAGDTRTPNALMARYYAERAS-AGLIISEATSVTPQGVGY 74
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 62 RCRALNGIPGPALATYYQQRSTP 84
+C+ N +P PA TYYQQR P
Sbjct: 268 QCQTYNDVPLPAPDTYYQQRILP 290
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 62 RCRALNGIPGPALATYYQQRSTP 84
+C+ N +P PA TYYQQR P
Sbjct: 274 QCQTYNDVPLPAPDTYYQQRILP 296
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 62 RCRALNGIPGPALATYYQQRSTP 84
+C+ N +P PA TYYQQR P
Sbjct: 265 QCQTYNDVPLPAPDTYYQQRILP 287
>pdb|1I8I|A Chain A, Crystal Structure Of Dsfv Mr1 In Complex With The Peptide
Antigen Of The Mutant Epidermal Growth Factor Receptor,
Egfrviii, At Room Temperature
pdb|1I8K|A Chain A, Crystal Structure Of Dsfv Mr1 In Complex With The Peptide
Antigen Of The Mutant Epidermal Growth Factor Receptor,
Egfrviii, At Liquid Nitrogen Temperature
Length = 107
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 77 YYQQR-STPGGFLISEGTAVSPTAPGYFRNS 106
+YQQ+ P FLISEG + P P F +S
Sbjct: 35 WYQQKPGEPPKFLISEGNTLRPGVPSRFSSS 65
>pdb|2ADG|A Chain A, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425
pdb|2ADI|A Chain A, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425 In
Complex With Barium
pdb|2ADJ|A Chain A, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425 In
Complex With Calcium
Length = 214
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 77 YYQQR-STPGGFLISEGTAVSPTAPGYFRNS 106
+YQQ+ P F ISEG + P P F +S
Sbjct: 35 WYQQKPGEPPKFFISEGNTLRPGVPSRFSSS 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,902,150
Number of Sequences: 62578
Number of extensions: 81525
Number of successful extensions: 195
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 41
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)