Your job contains 1 sequence.
>033952
MSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033952
(107 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2043323 - symbol:AT2G47640 "AT2G47640" species... 453 7.3e-43 1
TAIR|locus:2081685 - symbol:AT3G62840 "AT3G62840" species... 453 7.3e-43 1
FB|FBgn0261789 - symbol:SmD2 "Small ribonucleoprotein par... 424 8.7e-40 1
UNIPROTKB|G3X6Z3 - symbol:SNRPD2 "Small nuclear ribonucle... 419 2.9e-39 1
UNIPROTKB|Q3SZF8 - symbol:SNRPD2 "Small nuclear ribonucle... 419 2.9e-39 1
UNIPROTKB|F1PSI7 - symbol:SNRPD2 "Uncharacterized protein... 419 2.9e-39 1
UNIPROTKB|P62316 - symbol:SNRPD2 "Small nuclear ribonucle... 419 2.9e-39 1
MGI|MGI:98345 - symbol:Snrpd2 "small nuclear ribonucleopr... 419 2.9e-39 1
RGD|1593018 - symbol:Snrpd2 "small nuclear ribonucleoprot... 419 2.9e-39 1
ZFIN|ZDB-GENE-040914-10 - symbol:snrpd2 "small nuclear ri... 419 2.9e-39 1
DICTYBASE|DDB_G0285395 - symbol:snrpD2 "putative small nu... 399 3.9e-37 1
WB|WBGene00004917 - symbol:snr-4 species:6239 "Caenorhabd... 391 2.7e-36 1
UNIPROTKB|Q18786 - symbol:snr-4 "Probable small nuclear r... 391 2.7e-36 1
UNIPROTKB|E2RTK0 - symbol:E2RTK0 "Uncharacterized protein... 345 2.0e-31 1
POMBASE|SPAC2C4.03c - symbol:smd2 "Sm snRNP core protein ... 326 2.1e-29 1
UNIPROTKB|G4NGW0 - symbol:MGG_04013 "Small nuclear ribonu... 324 3.4e-29 1
GENEDB_PFALCIPARUM|PFB0865w - symbol:PFB0865w "small nucl... 306 2.8e-27 1
UNIPROTKB|O96265 - symbol:PFB0865w "Small nuclear ribonuc... 306 2.8e-27 1
ASPGD|ASPL0000050456 - symbol:AN1802 species:162425 "Emer... 260 2.1e-22 1
SGD|S000004265 - symbol:SMD2 "Core Sm protein Sm D2" spec... 252 1.5e-21 1
UNIPROTKB|I3LGQ4 - symbol:SNRPD2 "Small nuclear ribonucle... 233 1.5e-19 1
UNIPROTKB|K7EJB5 - symbol:SNRPD2 "Small nuclear ribonucle... 228 5.1e-19 1
UNIPROTKB|K7ERG4 - symbol:SNRPD2 "Small nuclear ribonucle... 163 3.9e-12 1
WB|WBGene00003077 - symbol:lsm-3 species:6239 "Caenorhabd... 132 7.6e-09 1
GENEDB_PFALCIPARUM|PF08_0049 - symbol:PF08_0049 "ribonucl... 125 4.2e-08 1
TAIR|locus:2014922 - symbol:LSM3A "AT1G21190" species:370... 121 1.1e-07 1
FB|FBgn0051184 - symbol:LSm3 species:7227 "Drosophila mel... 120 1.4e-07 1
UNIPROTKB|F1P280 - symbol:LSM3 "Uncharacterized protein" ... 118 2.3e-07 1
UNIPROTKB|Q32PE9 - symbol:LSM3 "U6 snRNA-associated Sm-li... 118 2.3e-07 1
UNIPROTKB|P62310 - symbol:LSM3 "U6 snRNA-associated Sm-li... 118 2.3e-07 1
UNIPROTKB|F2Z5S4 - symbol:LSM3 "Uncharacterized protein" ... 118 2.3e-07 1
MGI|MGI:1914928 - symbol:Lsm3 "LSM3 homolog, U6 small nuc... 118 2.3e-07 1
POMBASE|SPBC9B6.05c - symbol:lsm3 "U6 snRNP-associated pr... 118 2.3e-07 1
RGD|1305971 - symbol:Lsm3 "LSM3 homolog, U6 small nuclear... 118 2.3e-07 1
TAIR|locus:2036257 - symbol:LSM3B "AT1G76860" species:370... 117 2.9e-07 1
DICTYBASE|DDB_G0277107 - symbol:lsm3 "putative U6 small n... 115 4.8e-07 1
ASPGD|ASPL0000060673 - symbol:AN10007 species:162425 "Eme... 110 1.6e-06 1
DICTYBASE|DDB_G0289453 - symbol:DDB_G0289453 "putative sm... 112 3.1e-06 1
UNIPROTKB|G4N3U5 - symbol:MGG_16841 "Uncharacterized prot... 105 5.5e-06 1
TAIR|locus:2163416 - symbol:AT5G44500 "AT5G44500" species... 101 5.1e-05 1
SGD|S000006434 - symbol:LSM3 "Lsm (Like Sm) protein" spec... 93 0.00010 1
TAIR|locus:2128610 - symbol:smB "small nuclear ribonucleo... 97 0.00015 1
UNIPROTKB|Q29329 - symbol:SNRPD2 "Small nuclear ribonucle... 88 0.00035 1
>TAIR|locus:2043323 [details] [associations]
symbol:AT2G47640 "AT2G47640" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] InterPro:IPR027248 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CP002686 EMBL:CP002685 GO:GO:0005730
GO:GO:0003676 EMBL:AC005309 GO:GO:0030529 EMBL:AC002535
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
OMA:VKELWTE HSSP:P62316 IPI:IPI00543985 RefSeq:NP_001078076.1
RefSeq:NP_566107.1 RefSeq:NP_567134.3 UniGene:At.23561
UniGene:At.27002 UniGene:At.36335 UniGene:At.63633
ProteinModelPortal:Q8RUH0 SMR:Q8RUH0 IntAct:Q8RUH0 STRING:Q8RUH0
PRIDE:Q8RUH0 EnsemblPlants:AT2G47640.1 EnsemblPlants:AT2G47640.4
EnsemblPlants:AT3G62840.1 GeneID:819377 GeneID:825459
KEGG:ath:AT2G47640 KEGG:ath:AT3G62840 TAIR:At2g47640 TAIR:At3g62840
InParanoid:Q8RUH0 PhylomeDB:Q8RUH0 ProtClustDB:CLSN2688988
ArrayExpress:Q8RUH0 Genevestigator:Q8RUH0 Uniprot:Q8RUH0
Length = 109
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 90/109 (82%), Positives = 94/109 (86%)
Query: 1 MSRPMXXXXXXXXXXXXX--TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 58
MS+PM TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNM
Sbjct: 1 MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60
Query: 59 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107
VLENVREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109
>TAIR|locus:2081685 [details] [associations]
symbol:AT3G62840 "AT3G62840" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR027248 INTERPRO:IPR001163 GO:GO:0005829
EMBL:CP002686 EMBL:CP002685 GO:GO:0005730 GO:GO:0003676
EMBL:AC005309 GO:GO:0030529 EMBL:AC002535 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777 OMA:VKELWTE
HSSP:P62316 IPI:IPI00543985 RefSeq:NP_001078076.1
RefSeq:NP_566107.1 RefSeq:NP_567134.3 UniGene:At.23561
UniGene:At.27002 UniGene:At.36335 UniGene:At.63633
ProteinModelPortal:Q8RUH0 SMR:Q8RUH0 IntAct:Q8RUH0 STRING:Q8RUH0
PRIDE:Q8RUH0 EnsemblPlants:AT2G47640.1 EnsemblPlants:AT2G47640.4
EnsemblPlants:AT3G62840.1 GeneID:819377 GeneID:825459
KEGG:ath:AT2G47640 KEGG:ath:AT3G62840 TAIR:At2g47640 TAIR:At3g62840
InParanoid:Q8RUH0 PhylomeDB:Q8RUH0 ProtClustDB:CLSN2688988
ArrayExpress:Q8RUH0 Genevestigator:Q8RUH0 Uniprot:Q8RUH0
Length = 109
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 90/109 (82%), Positives = 94/109 (86%)
Query: 1 MSRPMXXXXXXXXXXXXX--TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 58
MS+PM TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNM
Sbjct: 1 MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60
Query: 59 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107
VLENVREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109
>FB|FBgn0261789 [details] [associations]
symbol:SmD2 "Small ribonucleoprotein particle protein SmD2"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR027248 INTERPRO:IPR001163
EMBL:AE014297 GO:GO:0007067 GO:GO:0007052 GO:GO:0022008
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11096 PANTHER:PTHR12777
GeneTree:ENSGT00390000017608 OMA:VKELWTE EMBL:AY069315
RefSeq:NP_649645.1 UniGene:Dm.9898 ProteinModelPortal:Q9VI10
SMR:Q9VI10 DIP:DIP-20721N IntAct:Q9VI10 MINT:MINT-768757
STRING:Q9VI10 PaxDb:Q9VI10 PRIDE:Q9VI10 EnsemblMetazoa:FBtr0081737
GeneID:40781 KEGG:dme:Dmel_CG1249 UCSC:CG1249-RA CTD:40781
FlyBase:FBgn0261789 InParanoid:Q9VI10 OrthoDB:EOG4K98VQ
PhylomeDB:Q9VI10 GenomeRNAi:40781 NextBio:820557 Bgee:Q9VI10
GermOnline:CG1249 Uniprot:Q9VI10
Length = 119
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 80/88 (90%), Positives = 84/88 (95%)
Query: 19 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 78
TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKK
Sbjct: 25 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKK 84
Query: 79 KALPVNKDRFISKMFLRGDSVIIVLRNP 106
K PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 85 KVKPVNKDRFISKMFLRGDSVILVLRNP 112
>UNIPROTKB|G3X6Z3 [details] [associations]
symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR027248 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 UniGene:Bt.46839 NextBio:20871576
PANTHER:PTHR12777 GeneTree:ENSGT00390000017608 OMA:VKELWTE
EMBL:DAAA02047376 Ensembl:ENSBTAT00000016153 Uniprot:G3X6Z3
Length = 117
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 78/88 (88%), Positives = 85/88 (96%)
Query: 19 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 78
TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKK
Sbjct: 25 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 84
Query: 79 KALPVNKDRFISKMFLRGDSVIIVLRNP 106
K+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 85 KSKPVNKDRYISKMFLRGDSVIVVLRNP 112
>UNIPROTKB|Q3SZF8 [details] [associations]
symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=IEA] InterPro:IPR027248
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 EMBL:BC102877
IPI:IPI00687015 RefSeq:NP_001029648.1 UniGene:Bt.46839
ProteinModelPortal:Q3SZF8 SMR:Q3SZF8 STRING:Q3SZF8 PRIDE:Q3SZF8
GeneID:514932 KEGG:bta:514932 CTD:6633 HOGENOM:HOG000223545
HOVERGEN:HBG054415 InParanoid:Q3SZF8 KO:K11096 OrthoDB:EOG4PC9TN
NextBio:20871576 PANTHER:PTHR12777 Uniprot:Q3SZF8
Length = 118
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 78/88 (88%), Positives = 85/88 (96%)
Query: 19 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 78
TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKK
Sbjct: 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 85
Query: 79 KALPVNKDRFISKMFLRGDSVIIVLRNP 106
K+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 86 KSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>UNIPROTKB|F1PSI7 [details] [associations]
symbol:SNRPD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030532 "small nuclear ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR027248 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
CTD:6633 KO:K11096 PANTHER:PTHR12777 GeneTree:ENSGT00390000017608
OMA:VKELWTE EMBL:AAEX03000871 RefSeq:NP_001239341.1
ProteinModelPortal:F1PSI7 Ensembl:ENSCAFT00000007082
GeneID:100685983 KEGG:cfa:100685983 Uniprot:F1PSI7
Length = 118
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 78/88 (88%), Positives = 85/88 (96%)
Query: 19 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 78
TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKK
Sbjct: 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 85
Query: 79 KALPVNKDRFISKMFLRGDSVIIVLRNP 106
K+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 86 KSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>UNIPROTKB|P62316 [details] [associations]
symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
species:9606 "Homo sapiens" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0000245 "spliceosomal complex assembly"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
[GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR027248
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471126 GO:GO:0003676 GO:GO:0030529 GO:GO:0000387
GO:GO:0034660 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 GO:GO:0000245 GO:GO:0005689 EMBL:AC007191 PDB:3S6N
PDBsum:3S6N Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1
PDB:3PGW PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D
PDBsum:3CW1 PDBsum:3PGW PDB:1B34 PDBsum:1B34 CleanEx:HS_SNRPD1
CTD:6633 HOGENOM:HOG000223545 HOVERGEN:HBG054415 KO:K11096
OrthoDB:EOG4PC9TN PANTHER:PTHR12777 OMA:VKELWTE EMBL:U15008
EMBL:AK291912 EMBL:BC000486 EMBL:BC001930 EMBL:BU531743
IPI:IPI00017963 PIR:I38861 RefSeq:NP_004588.1 RefSeq:NP_808210.2
UniGene:Hs.515472 ProteinModelPortal:P62316 SMR:P62316
DIP:DIP-31219N IntAct:P62316 MINT:MINT-5002672 STRING:P62316
PhosphoSite:P62316 DMDM:51338666 PaxDb:P62316 PeptideAtlas:P62316
PRIDE:P62316 DNASU:6633 Ensembl:ENST00000342669
Ensembl:ENST00000391932 GeneID:6633 KEGG:hsa:6633 UCSC:uc002pcv.3
GeneCards:GC19M046190 HGNC:HGNC:11159 HPA:HPA041437 MIM:601061
neXtProt:NX_P62316 PharmGKB:PA36000 InParanoid:P62316
PhylomeDB:P62316 EvolutionaryTrace:P62316 GenomeRNAi:6633
NextBio:25839 Bgee:P62316 CleanEx:HS_SNRPD2 Genevestigator:P62316
GermOnline:ENSG00000125743 Uniprot:P62316
Length = 118
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 78/88 (88%), Positives = 85/88 (96%)
Query: 19 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 78
TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKK
Sbjct: 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 85
Query: 79 KALPVNKDRFISKMFLRGDSVIIVLRNP 106
K+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 86 KSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>MGI|MGI:98345 [details] [associations]
symbol:Snrpd2 "small nuclear ribonucleoprotein D2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR027248 MGI:MGI:98345
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 CTD:6633
HOGENOM:HOG000223545 HOVERGEN:HBG054415 KO:K11096 OrthoDB:EOG4PC9TN
PANTHER:PTHR12777 OMA:VKELWTE EMBL:AK007389 EMBL:AK045968
EMBL:AK088105 EMBL:BC043014 EMBL:BC051208 IPI:IPI00119220
RefSeq:NP_081219.1 UniGene:Mm.29135 ProteinModelPortal:P62317
SMR:P62317 MINT:MINT-124854 STRING:P62317 PhosphoSite:P62317
PaxDb:P62317 PRIDE:P62317 Ensembl:ENSMUST00000049294 GeneID:107686
KEGG:mmu:107686 InParanoid:P62317 NextBio:359250 Bgee:P62317
CleanEx:MM_SNRPD2 Genevestigator:P62317
GermOnline:ENSMUSG00000040824 Uniprot:P62317
Length = 118
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 78/88 (88%), Positives = 85/88 (96%)
Query: 19 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 78
TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKK
Sbjct: 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 85
Query: 79 KALPVNKDRFISKMFLRGDSVIIVLRNP 106
K+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 86 KSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>RGD|1593018 [details] [associations]
symbol:Snrpd2 "small nuclear ribonucleoprotein D2 polypeptide"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR027248
RGD:1593018 INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:CH473979 GO:GO:0005689
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
CTD:6633 HOGENOM:HOG000223545 HOVERGEN:HBG054415 KO:K11096
OrthoDB:EOG4PC9TN PANTHER:PTHR12777 GeneTree:ENSGT00390000017608
OMA:VKELWTE EMBL:BC168781 IPI:IPI00364045 RefSeq:NP_001102869.1
RefSeq:XP_214847.2 UniGene:Rn.110465 UniGene:Rn.145735 SMR:B5DES0
STRING:B5DES0 Ensembl:ENSRNOT00000021221 GeneID:292688
GeneID:680309 KEGG:rno:292688 KEGG:rno:680309 UCSC:RGD:1593018
CTD:292688 NextBio:718422 Genevestigator:B5DES0 Uniprot:B5DES0
Length = 118
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 78/88 (88%), Positives = 85/88 (96%)
Query: 19 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 78
TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKK
Sbjct: 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 85
Query: 79 KALPVNKDRFISKMFLRGDSVIIVLRNP 106
K+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 86 KSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>ZFIN|ZDB-GENE-040914-10 [details] [associations]
symbol:snrpd2 "small nuclear ribonucleoprotein D2
polypeptide" species:7955 "Danio rerio" [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR027248 INTERPRO:IPR001163 ZFIN:ZDB-GENE-040914-10
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
CTD:6633 HOGENOM:HOG000223545 HOVERGEN:HBG054415 KO:K11096
OrthoDB:EOG4PC9TN PANTHER:PTHR12777 GeneTree:ENSGT00390000017608
OMA:VKELWTE EMBL:BX663502 EMBL:BC093003 EMBL:AL928979
IPI:IPI00493498 RefSeq:NP_001017582.1 UniGene:Dr.129790 SMR:Q567V5
STRING:Q567V5 Ensembl:ENSDART00000059194 GeneID:550244
KEGG:dre:550244 InParanoid:Q567V5 NextBio:20879507 Uniprot:Q567V5
Length = 118
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 78/88 (88%), Positives = 85/88 (96%)
Query: 19 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 78
TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKK
Sbjct: 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 85
Query: 79 KALPVNKDRFISKMFLRGDSVIIVLRNP 106
K+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 86 KSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>DICTYBASE|DDB_G0285395 [details] [associations]
symbol:snrpD2 "putative small nuclear
ribonucleoprotein D2" species:44689 "Dictyostelium discoideum"
[GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=IEA;ISS] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR027248 dictyBase:DDB_G0285395 INTERPRO:IPR001163
GenomeReviews:CM000153_GR EMBL:AAFI02000079 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K11096
PANTHER:PTHR12777 OMA:VKELWTE RefSeq:XP_638255.1 HSSP:P62316
ProteinModelPortal:Q54NC5 SMR:Q54NC5 STRING:Q54NC5
EnsemblProtists:DDB0233193 GeneID:8625063 KEGG:ddi:DDB_G0285395
Uniprot:Q54NC5
Length = 112
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 75/87 (86%), Positives = 82/87 (94%)
Query: 20 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 79
GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKK
Sbjct: 18 GPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKK 77
Query: 80 ALPVNKDRFISKMFLRGDSVIIVLRNP 106
A P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct: 78 AKPINKDRFISKMFLRGDSVILVLKNP 104
>WB|WBGene00004917 [details] [associations]
symbol:snr-4 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0032940 "secretion by cell" evidence=IMP] [GO:0040027 "negative
regulation of vulval development" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] InterPro:IPR027248
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0006915 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0032940 GO:GO:0008380 GO:GO:0006397
GO:GO:0030529 GO:GO:0007281 GO:GO:0040027 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:Z78012 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000223545 KO:K11096
PANTHER:PTHR12777 PIR:T20151 RefSeq:NP_506004.1
ProteinModelPortal:Q18786 SMR:Q18786 DIP:DIP-27008N IntAct:Q18786
MINT:MINT-1076870 STRING:Q18786 PaxDb:Q18786
EnsemblMetazoa:C52E4.3.1 EnsemblMetazoa:C52E4.3.2
EnsemblMetazoa:C52E4.3.3 GeneID:179639 KEGG:cel:CELE_C52E4.3
UCSC:C52E4.3.2 CTD:179639 WormBase:C52E4.3
GeneTree:ENSGT00390000017608 InParanoid:Q18786 OMA:VKELWTE
NextBio:906258 Uniprot:Q18786
Length = 118
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 74/87 (85%), Positives = 81/87 (93%)
Query: 20 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 79
GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK
Sbjct: 27 GPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKK 86
Query: 80 ALPVNKDRFISKMFLRGDSVIIVLRNP 106
A V KDRFISKMFLRGDSVI+V++NP
Sbjct: 87 AKSVAKDRFISKMFLRGDSVILVVKNP 113
>UNIPROTKB|Q18786 [details] [associations]
symbol:snr-4 "Probable small nuclear ribonucleoprotein Sm
D2" species:6239 "Caenorhabditis elegans" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR027248 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0032940 GO:GO:0008380 GO:GO:0006397 GO:GO:0030529
GO:GO:0007281 GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:Z78012 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
PIR:T20151 RefSeq:NP_506004.1 ProteinModelPortal:Q18786 SMR:Q18786
DIP:DIP-27008N IntAct:Q18786 MINT:MINT-1076870 STRING:Q18786
PaxDb:Q18786 EnsemblMetazoa:C52E4.3.1 EnsemblMetazoa:C52E4.3.2
EnsemblMetazoa:C52E4.3.3 GeneID:179639 KEGG:cel:CELE_C52E4.3
UCSC:C52E4.3.2 CTD:179639 WormBase:C52E4.3
GeneTree:ENSGT00390000017608 InParanoid:Q18786 OMA:VKELWTE
NextBio:906258 Uniprot:Q18786
Length = 118
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 74/87 (85%), Positives = 81/87 (93%)
Query: 20 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 79
GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK
Sbjct: 27 GPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKK 86
Query: 80 ALPVNKDRFISKMFLRGDSVIIVLRNP 106
A V KDRFISKMFLRGDSVI+V++NP
Sbjct: 87 AKSVAKDRFISKMFLRGDSVILVVKNP 113
>UNIPROTKB|E2RTK0 [details] [associations]
symbol:E2RTK0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030532 "small nuclear ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR027248 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR12777 GeneTree:ENSGT00390000017608 EMBL:AAEX03008695
ProteinModelPortal:E2RTK0 Ensembl:ENSCAFT00000000979
NextBio:20856686 Uniprot:E2RTK0
Length = 117
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 67/86 (77%), Positives = 76/86 (88%)
Query: 19 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 78
TGPLSVL SVKNNTQVLINC N KKLLGRV+AF RHCNMVLENV+EMWT++PK+ KGKK
Sbjct: 26 TGPLSVLTQSVKNNTQVLINCCN-KKLLGRVKAFKRHCNMVLENVKEMWTKVPKSSKGKK 84
Query: 79 KALPVNKDRFISKMFLRGDSVIIVLR 104
K+ PVNKD +ISKMFL G S+I+VLR
Sbjct: 85 KSKPVNKDHYISKMFLCGHSIIVVLR 110
>POMBASE|SPAC2C4.03c [details] [associations]
symbol:smd2 "Sm snRNP core protein Smd2" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=NAS] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR027248 PomBase:SPAC2C4.03c
INTERPRO:IPR001163 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0005681 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GO:GO:0005685 GO:GO:0000395 HOGENOM:HOG000223545 KO:K11096
PANTHER:PTHR12777 OMA:VKELWTE PIR:T38514 RefSeq:NP_594506.1
ProteinModelPortal:O14036 SMR:O14036 IntAct:O14036 STRING:O14036
EnsemblFungi:SPAC2C4.03c.1 GeneID:2542480 KEGG:spo:SPAC2C4.03c
OrthoDB:EOG43247T NextBio:20803535 Uniprot:O14036
Length = 115
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 65/88 (73%), Positives = 74/88 (84%)
Query: 20 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK- 78
GPLSVL +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE +T GKK
Sbjct: 28 GPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKG 87
Query: 79 KALPVNKDRFISKMFLRGDSVIIVLRNP 106
KA +NKDRFISKMFLRGD V++V+R P
Sbjct: 88 KA--INKDRFISKMFLRGDGVVLVVRIP 113
>UNIPROTKB|G4NGW0 [details] [associations]
symbol:MGG_04013 "Small nuclear ribonucleoprotein Sm D2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR027248
INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529 EMBL:CM001236
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11096 PANTHER:PTHR12777 RefSeq:XP_003719837.1
ProteinModelPortal:G4NGW0 SMR:G4NGW0 EnsemblFungi:MGG_04013T0
GeneID:2677446 KEGG:mgr:MGG_04013 Uniprot:G4NGW0
Length = 117
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 62/84 (73%), Positives = 73/84 (86%)
Query: 20 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 79
GPLS+L +V+++TQVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ GKK
Sbjct: 33 GPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLASGKK- 91
Query: 80 ALPVNKDRFISKMFLRGDSVIIVL 103
PVNKDRFISKMFLRGDSVI+VL
Sbjct: 92 GRPVNKDRFISKMFLRGDSVILVL 115
>GENEDB_PFALCIPARUM|PFB0865w [details] [associations]
symbol:PFB0865w "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR027248 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AE001362 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
HSSP:P62316 PIR:D71604 RefSeq:XP_001349689.1
ProteinModelPortal:O96265 SMR:O96265 PRIDE:O96265
EnsemblProtists:PFB0865w:mRNA GeneID:812771 KEGG:pfa:PFB0865w
EuPathDB:PlasmoDB:PF3D7_0218500 OMA:NRKILGR ProtClustDB:CLSZ2432677
Uniprot:O96265
Length = 101
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 58/88 (65%), Positives = 72/88 (81%)
Query: 20 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 79
GPL +L VK+N QVLINCRNN+K+LGRV+AFDRHCN++L VRE+W E+ K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVKDKKKKKK 76
Query: 80 ALPVNKDRFISKMFLRGDSVIIVLRNPK 107
+NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 ---INKDRYISILFLRGDSVILILRNPK 101
>UNIPROTKB|O96265 [details] [associations]
symbol:PFB0865w "Small nuclear ribonucleoprotein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR027248 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AE001362 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
HSSP:P62316 PIR:D71604 RefSeq:XP_001349689.1
ProteinModelPortal:O96265 SMR:O96265 PRIDE:O96265
EnsemblProtists:PFB0865w:mRNA GeneID:812771 KEGG:pfa:PFB0865w
EuPathDB:PlasmoDB:PF3D7_0218500 OMA:NRKILGR ProtClustDB:CLSZ2432677
Uniprot:O96265
Length = 101
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 58/88 (65%), Positives = 72/88 (81%)
Query: 20 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 79
GPL +L VK+N QVLINCRNN+K+LGRV+AFDRHCN++L VRE+W E+ K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVKDKKKKKK 76
Query: 80 ALPVNKDRFISKMFLRGDSVIIVLRNPK 107
+NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 ---INKDRYISILFLRGDSVILILRNPK 101
>ASPGD|ASPL0000050456 [details] [associations]
symbol:AN1802 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR027248
INTERPRO:IPR001163 EMBL:BN001307 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223545 PANTHER:PTHR12777 OMA:VKELWTE
EnsemblFungi:CADANIAT00008450 Uniprot:C8VPG1
Length = 113
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 52/75 (69%), Positives = 62/75 (82%)
Query: 20 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 79
GPLS+L +V+ NTQVLI+ R+N+KLL RV+AFDRH NMVLENV+EMWTE K GKG+
Sbjct: 33 GPLSLLQTAVRTNTQVLISLRSNRKLLARVKAFDRHSNMVLENVKEMWTEPQKGGKGR-- 90
Query: 80 ALPVNKDRFISKMFL 94
PVNKDRFISKM+L
Sbjct: 91 --PVNKDRFISKMYL 103
>SGD|S000004265 [details] [associations]
symbol:SMD2 "Core Sm protein Sm D2" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IPI] InterPro:IPR027248
SGD:S000004265 INTERPRO:IPR001163 GO:GO:0005682 EMBL:BK006945
GO:GO:0003723 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0071004 EMBL:U17245 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
GeneTree:ENSGT00390000017608 OMA:VKELWTE OrthoDB:EOG43247T
PIR:S69326 RefSeq:NP_013377.1 ProteinModelPortal:Q06217 SMR:Q06217
DIP:DIP-1421N IntAct:Q06217 MINT:MINT-368970 STRING:Q06217
PaxDb:Q06217 PRIDE:Q06217 EnsemblFungi:YLR275W GeneID:850981
KEGG:sce:YLR275W CYGD:YLR275w NextBio:967495 Genevestigator:Q06217
GermOnline:YLR275W Uniprot:Q06217
Length = 110
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 49/87 (56%), Positives = 67/87 (77%)
Query: 20 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 79
GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE K GK
Sbjct: 29 GPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKNV-- 84
Query: 80 ALPVNKDRFISKMFLRGDSVIIVLRNP 106
+N++RFISK+FLRGDSVI+VL+ P
Sbjct: 85 ---INRERFISKLFLRGDSVIVVLKTP 108
>UNIPROTKB|I3LGQ4 [details] [associations]
symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR027248 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR12777
GeneTree:ENSGT00390000017608 Ensembl:ENSSSCT00000032366 OMA:SKIAIRQ
Uniprot:I3LGQ4
Length = 104
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 51/88 (57%), Positives = 60/88 (68%)
Query: 19 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 78
TGPLSVL SVKN+ + +N + + LG + F RHCNMVLENV+EMWTE
Sbjct: 25 TGPLSVLTQSVKNSRKGSVNVTHGHQALGGFQGFSRHCNMVLENVKEMWTE--------- 75
Query: 79 KALPVNKDRFISKMFLRGDSVIIVLRNP 106
V KDR+ISKMFLRGDSVI+VLRNP
Sbjct: 76 ----VXKDRYISKMFLRGDSVIVVLRNP 99
>UNIPROTKB|K7EJB5 [details] [associations]
symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
species:9606 "Homo sapiens" [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=IEA] InterPro:IPR027248 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AC007191 Pfam:PF01423
PANTHER:PTHR12777 HGNC:HGNC:11159 Ensembl:ENST00000585392
Uniprot:K7EJB5
Length = 54
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 42/49 (85%), Positives = 48/49 (97%)
Query: 58 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 106
MVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 49
>UNIPROTKB|K7ERG4 [details] [associations]
symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
species:9606 "Homo sapiens" [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=IEA] InterPro:IPR027248 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AC007191 PANTHER:PTHR12777 HGNC:HGNC:11159
Ensembl:ENST00000590212 Uniprot:K7ERG4
Length = 78
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 19 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFD 53
TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFD
Sbjct: 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
>WB|WBGene00003077 [details] [associations]
symbol:lsm-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0000932
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550 OMA:MVFVRGD
EMBL:AL132865 HSSP:Q8ZYG5 RefSeq:NP_502579.1
ProteinModelPortal:Q9U1W8 SMR:Q9U1W8 DIP:DIP-26669N
MINT:MINT-1050579 STRING:Q9U1W8 PaxDb:Q9U1W8
EnsemblMetazoa:Y62E10A.12.1 EnsemblMetazoa:Y62E10A.12.2
GeneID:178303 KEGG:cel:CELE_Y62E10A.12 UCSC:Y62E10A.12.1 CTD:178303
WormBase:Y62E10A.12 InParanoid:Q9U1W8 NextBio:900574 Uniprot:Q9U1W8
Length = 102
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL +L +S+ + +V + RN+++L GR+RAFD+H NMVL V E T + + +
Sbjct: 17 PLDLLRLSL--DERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTR-EVDEDTFEE 73
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
+ R + +F+RGDSVI+V
Sbjct: 74 IYKQTKRVVPMLFVRGDSVILV 95
>GENEDB_PFALCIPARUM|PF08_0049 [details] [associations]
symbol:PF08_0049 "ribonucleoprotein, putative"
species:5833 "Plasmodium falciparum" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12622 EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223550 RefSeq:XP_002808862.1
ProteinModelPortal:C0H4W2 PRIDE:C0H4W2
EnsemblProtists:PF08_0049:mRNA GeneID:2655500 KEGG:pfa:PF08_0049
EuPathDB:PlasmoDB:PF3D7_0819900 ProtClustDB:CLSZ2444967
Uniprot:C0H4W2
Length = 91
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/83 (31%), Positives = 51/83 (61%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL + ++++ ++ + C+ +++L+G++ A+D H NM+L NVRE + K +
Sbjct: 10 PLDYIRLNMEE--EIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKENDEET-- 65
Query: 81 LPVNK-DRFISKMFLRGDSVIIV 102
V K +R + +F+RGDS+I+V
Sbjct: 66 --VKKMERNLDMVFVRGDSIILV 86
>TAIR|locus:2014922 [details] [associations]
symbol:LSM3A "AT1G21190" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 EMBL:AC036104
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223550
HSSP:Q8ZYG5 ProtClustDB:CLSN2679472 EMBL:AF334722 IPI:IPI00535788
PIR:B86345 RefSeq:NP_173542.1 UniGene:At.15544
ProteinModelPortal:Q9LMN4 SMR:Q9LMN4 STRING:Q9LMN4 PRIDE:Q9LMN4
EnsemblPlants:AT1G21190.1 GeneID:838714 KEGG:ath:AT1G21190
TAIR:At1g21190 InParanoid:Q9LMN4 OMA:IEERIYV PhylomeDB:Q9LMN4
ArrayExpress:Q9LMN4 Genevestigator:Q9LMN4 Uniprot:Q9LMN4
Length = 97
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 25/82 (30%), Positives = 52/82 (63%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL ++ +S++ ++ + R++++L G++ AFD+H NM+L +V E+ T + + ++
Sbjct: 12 PLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEI 69
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
+ K R + +F+RGD VI+V
Sbjct: 70 VRTTK-RTVPFLFVRGDGVILV 90
>FB|FBgn0051184 [details] [associations]
symbol:LSm3 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
INTERPRO:IPR001163 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
HSSP:O29386 OrthoDB:EOG45X6CK EMBL:BT001552
ProteinModelPortal:Q8IGW7 SMR:Q8IGW7 STRING:Q8IGW7 PaxDb:Q8IGW7
PRIDE:Q8IGW7 FlyBase:FBgn0051184 InParanoid:Q8IGW7
ArrayExpress:Q8IGW7 Bgee:Q8IGW7 Uniprot:Q8IGW7
Length = 103
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
K R I +F+RGD VI+V
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>UNIPROTKB|F1P280 [details] [associations]
symbol:LSM3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:AADN02014130
IPI:IPI00596206 Ensembl:ENSGALT00000033548 Uniprot:F1P280
Length = 96
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/82 (31%), Positives = 50/82 (60%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 11 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 68
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
K R I +F+RGD V++V
Sbjct: 69 YKSTK-RNIPMLFVRGDGVVLV 89
>UNIPROTKB|Q32PE9 [details] [associations]
symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 EMBL:BC108142 IPI:IPI00715218 RefSeq:NP_001032564.1
UniGene:Bt.53058 HSSP:Q5CXX3 ProteinModelPortal:Q32PE9 SMR:Q32PE9
STRING:Q32PE9 PRIDE:Q32PE9 Ensembl:ENSBTAT00000009684 GeneID:614759
KEGG:bta:614759 CTD:27258 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
HOVERGEN:HBG052368 InParanoid:Q32PE9 OMA:MVFVRGD OrthoDB:EOG42NJ20
NextBio:20899271 Uniprot:Q32PE9
Length = 102
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/82 (31%), Positives = 50/82 (60%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>UNIPROTKB|P62310 [details] [associations]
symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182289 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471055
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0043928 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 CTD:27258 eggNOG:NOG236203
HOGENOM:HOG000223550 HOVERGEN:HBG052368 OMA:MVFVRGD
OrthoDB:EOG42NJ20 EMBL:AJ238095 EMBL:AF182418 EMBL:CR457185
EMBL:BC007055 IPI:IPI00219229 RefSeq:NP_055278.1 UniGene:Hs.111632
ProteinModelPortal:P62310 SMR:P62310 DIP:DIP-31218N IntAct:P62310
MINT:MINT-1036960 STRING:P62310 PhosphoSite:P62310 DMDM:61227725
PaxDb:P62310 PeptideAtlas:P62310 PRIDE:P62310
Ensembl:ENST00000306024 GeneID:27258 KEGG:hsa:27258 UCSC:uc003byn.3
GeneCards:GC03P014219 HGNC:HGNC:17874 HPA:HPA044966 MIM:607283
neXtProt:NX_P62310 PharmGKB:PA134881991 InParanoid:P62310
PhylomeDB:P62310 ChiTaRS:LSM3 GenomeRNAi:27258 NextBio:50206
ArrayExpress:P62310 Bgee:P62310 CleanEx:HS_LSM3
Genevestigator:P62310 GermOnline:ENSG00000170860 Uniprot:P62310
Length = 102
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/82 (31%), Positives = 50/82 (60%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>UNIPROTKB|F2Z5S4 [details] [associations]
symbol:LSM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27258
GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:CU633560
RefSeq:NP_001231857.1 UniGene:Ssc.1234 ProteinModelPortal:F2Z5S4
SMR:F2Z5S4 PRIDE:F2Z5S4 Ensembl:ENSSSCT00000012698 GeneID:100514071
KEGG:ssc:100514071 Uniprot:F2Z5S4
Length = 102
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/82 (31%), Positives = 50/82 (60%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>MGI|MGI:1914928 [details] [associations]
symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0030629 "U6 snRNA
3'-end binding" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] MGI:MGI:1914928 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27258 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
HOVERGEN:HBG052368 OMA:MVFVRGD OrthoDB:EOG42NJ20 EMBL:AK003125
EMBL:AK007849 EMBL:AK021251 EMBL:BC054368 EMBL:BC062875
IPI:IPI00230388 RefSeq:NP_080585.1 UniGene:Mm.246693
UniGene:Mm.410956 ProteinModelPortal:P62311 SMR:P62311
STRING:P62311 PhosphoSite:P62311 REPRODUCTION-2DPAGE:IPI00230388
REPRODUCTION-2DPAGE:P62311 PaxDb:P62311 PRIDE:P62311
Ensembl:ENSMUST00000040607 GeneID:67678 KEGG:mmu:67678
UCSC:uc009cye.1 InParanoid:P62311 NextBio:325233 Bgee:P62311
Genevestigator:P62311 GermOnline:ENSMUSG00000034192 Uniprot:P62311
Length = 102
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/82 (31%), Positives = 50/82 (60%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>POMBASE|SPBC9B6.05c [details] [associations]
symbol:lsm3 "U6 snRNP-associated protein Lsm3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] PomBase:SPBC9B6.05c
INTERPRO:IPR001163 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723 GO:GO:0006402
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540
GO:GO:0045292 KO:K12622 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223550 OMA:MVFVRGD PIR:T40786 RefSeq:NP_595747.1
PDB:4EMG PDBsum:4EMG ProteinModelPortal:Q9Y7M4 IntAct:Q9Y7M4
STRING:Q9Y7M4 EnsemblFungi:SPBC9B6.05c.1 GeneID:2540212
KEGG:spo:SPBC9B6.05c OrthoDB:EOG4JQ77D NextBio:20801344
Uniprot:Q9Y7M4
Length = 93
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL ++ +S+ + V + R +++L GR+ A+D H NMVL + E+ T K KA
Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
L + + +F+RGDSVI++
Sbjct: 68 LKTIRKHY-EMLFVRGDSVILI 88
>RGD|1305971 [details] [associations]
symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] RGD:1305971
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:CH473957 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27258 GeneTree:ENSGT00390000013951 OMA:MVFVRGD
OrthoDB:EOG42NJ20 IPI:IPI00364533 RefSeq:NP_001100081.1
UniGene:Rn.203046 SMR:D4A7U6 Ensembl:ENSRNOT00000011557
GeneID:297455 KEGG:rno:297455 UCSC:RGD:1305971 NextBio:642291
Uniprot:D4A7U6
Length = 102
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/82 (31%), Positives = 50/82 (60%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>TAIR|locus:2036257 [details] [associations]
symbol:LSM3B "AT1G76860" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
GenomeReviews:CT485782_GR InterPro:IPR010920 SUPFAM:SSF50182
KO:K12622 EMBL:AC079283 UniGene:At.26946 UniGene:At.64098
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
HOGENOM:HOG000223550 OMA:MVFVRGD HSSP:Q8ZYG5 EMBL:AY086266
EMBL:BT025575 IPI:IPI00540699 PIR:D96797 RefSeq:NP_177812.1
ProteinModelPortal:Q9C6K5 SMR:Q9C6K5 STRING:Q9C6K5 PaxDb:Q9C6K5
PRIDE:Q9C6K5 EnsemblPlants:AT1G76860.1 GeneID:844021
KEGG:ath:AT1G76860 TAIR:At1g76860 InParanoid:Q9C6K5
PhylomeDB:Q9C6K5 ProtClustDB:CLSN2679472 Genevestigator:Q9C6K5
Uniprot:Q9C6K5
Length = 98
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL ++ +S+ + ++ + R++++L G++ AFD+H NM+L +V E T + + ++
Sbjct: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEI 69
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
+ K R I +F+RGD VI+V
Sbjct: 70 VRTTK-RTIEFLFVRGDGVILV 90
>DICTYBASE|DDB_G0277107 [details] [associations]
symbol:lsm3 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0277107
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000151_GR
GO:GO:0003723 GO:GO:0006402 EMBL:AAFI02000019 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 KO:K12622
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG236203 OMA:MVFVRGD RefSeq:XP_001134590.1
ProteinModelPortal:Q1ZXK3 STRING:Q1ZXK3 EnsemblProtists:DDB0233377
GeneID:8620835 KEGG:ddi:DDB_G0277107 ProtClustDB:CLSZ2445184
Uniprot:Q1ZXK3
Length = 97
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 24/82 (29%), Positives = 50/82 (60%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL ++ +S+ + ++ + R +++L G++ A+D+H NM+L +V E + K + ++
Sbjct: 12 PLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEI 69
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
+ N R I +F+RGD VI++
Sbjct: 70 IR-NIKRNIKMLFVRGDGVILI 90
>ASPGD|ASPL0000060673 [details] [associations]
symbol:AN10007 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005730
EMBL:BN001308 GO:GO:0003676 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223550 OMA:MVFVRGD EnsemblFungi:CADANIAT00002707
Uniprot:C8VRD4
Length = 96
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + ++
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEHI 72
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
+ K +F+RGDSV+++
Sbjct: 73 RTIKKQE--EMLFVRGDSVVLI 92
>DICTYBASE|DDB_G0289453 [details] [associations]
symbol:DDB_G0289453 "putative small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003674 "molecular_function" evidence=ND]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
dictyBase:DDB_G0289453 INTERPRO:IPR001163 EMBL:AAFI02000141
GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
RefSeq:XP_636207.1 EnsemblProtists:DDB0233195 GeneID:8627145
KEGG:ddi:DDB_G0289453 eggNOG:NOG242281 OMA:DNIHKAR Uniprot:Q54HH8
Length = 257
Score = 112 (44.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/91 (29%), Positives = 51/91 (56%)
Query: 20 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVR----AFDRHCNMVLENVREMWT---ELPK 72
GPLS+L ++++ +++ + R + G R AFD+H N++L +V E + LP
Sbjct: 165 GPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKSLPS 224
Query: 73 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 103
T + P K R+ ++F++GD+V+ V+
Sbjct: 225 TRNQNQPIQPKIK-RYYGQLFIKGDTVVSVI 254
>UNIPROTKB|G4N3U5 [details] [associations]
symbol:MGG_16841 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 GO:GO:0005730 EMBL:CM001233
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 RefSeq:XP_003712525.1
ProteinModelPortal:G4N3U5 EnsemblFungi:MGG_16841T0 GeneID:12985068
KEGG:mgr:MGG_16841 Uniprot:G4N3U5
Length = 95
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 35 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 94
V + R +++L GR+ A+D HCN+VL +V E + + + K + R + +F+
Sbjct: 24 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYIQDEDDESELKTV----SRKLEMLFV 79
Query: 95 RGDSVIIV 102
RGDSV+++
Sbjct: 80 RGDSVVMI 87
>TAIR|locus:2163416 [details] [associations]
symbol:AT5G44500 "AT5G44500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002688 GO:GO:0005730 GO:GO:0003723
GO:GO:0030529 EMBL:AB017065 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P14678 KO:K11086
InterPro:IPR017131 PIRSF:PIRSF037187 OMA:KNNKMIQ EMBL:AY042856
EMBL:AY072470 EMBL:AK176849 EMBL:AK221574 IPI:IPI00525357
RefSeq:NP_001032011.1 RefSeq:NP_199263.1 UniGene:At.7776
ProteinModelPortal:Q9FI15 SMR:Q9FI15 IntAct:Q9FI15 STRING:Q9FI15
EnsemblPlants:AT5G44500.1 EnsemblPlants:AT5G44500.2 GeneID:834477
KEGG:ath:AT5G44500 TAIR:At5g44500 InParanoid:Q9FI15
PhylomeDB:Q9FI15 ProtClustDB:CLSN2916196 Genevestigator:Q9FI15
Uniprot:Q9FI15
Length = 254
Score = 101 (40.6 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 32 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR-FIS 90
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KG KK ++R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGNKKTNEEREERRTLG 71
Query: 91 KMFLRGDSVI 100
+ LRG+ VI
Sbjct: 72 LVLLRGEEVI 81
>SGD|S000006434 [details] [associations]
symbol:LSM3 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IDA;TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS;IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=NAS;IDA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=TAS] SGD:S000006434 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0008033
GO:GO:0000956 GO:GO:0000398 EMBL:U21094 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 RefSeq:NP_013543.3
GeneID:851159 KEGG:sce:YLR438C-A KO:K12622 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG236203 GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
OMA:MVFVRGD OrthoDB:EOG4JQ77D EMBL:Z30582 EMBL:X06790 PIR:S78568
RefSeq:NP_013545.3 PDB:3BW1 PDBsum:3BW1 ProteinModelPortal:P57743
SMR:P57743 DIP:DIP-2587N IntAct:P57743 MINT:MINT-422505
STRING:P57743 PaxDb:P57743 PeptideAtlas:P57743
EnsemblFungi:YLR438C-A GeneID:851161 KEGG:sce:YLR440C
CYGD:YLR438c-a EvolutionaryTrace:P57743 NextBio:967948
Genevestigator:P57743 GermOnline:YLR438C-A Uniprot:P57743
Length = 89
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 80
PL +L +++ + +V I R + L+G ++AFD HCN+VL + E +L +
Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQL------NNEE 55
Query: 81 LPVNKDRFISKMFLRGDSVIIV 102
L +R +F+RGD+V ++
Sbjct: 56 LS-ESERRCEMVFIRGDTVTLI 76
>TAIR|locus:2128610 [details] [associations]
symbol:smB "small nuclear ribonucleoprotein associated
protein B" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0001510 "RNA methylation" evidence=RCA]
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CP002687 GO:GO:0003723
GO:GO:0030529 GO:GO:0015030 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL161553 EMBL:AL080253 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:P14678 KO:K11086
HOGENOM:HOG000188899 InterPro:IPR017131 PIRSF:PIRSF037187
OMA:PIIRPPG ProtClustDB:CLSN2916196 EMBL:BT004219 EMBL:BT005057
EMBL:AK317021 IPI:IPI00542207 PIR:T10586 RefSeq:NP_001031682.1
RefSeq:NP_001154258.1 RefSeq:NP_193777.1 RefSeq:NP_849414.1
UniGene:At.3551 ProteinModelPortal:Q9SUN5 SMR:Q9SUN5 IntAct:Q9SUN5
STRING:Q9SUN5 EnsemblPlants:AT4G20440.1 EnsemblPlants:AT4G20440.2
EnsemblPlants:AT4G20440.3 EnsemblPlants:AT4G20440.4 GeneID:827792
KEGG:ath:AT4G20440 TAIR:At4g20440 InParanoid:Q9SUN5
PhylomeDB:Q9SUN5 Genevestigator:Q9SUN5 Uniprot:Q9SUN5
Length = 257
Score = 97 (39.2 bits), Expect = 0.00015, P = 0.00015
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 32 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 91
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKINEEREDRRTLGL 71
Query: 92 MFLRGDSVI 100
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>UNIPROTKB|Q29329 [details] [associations]
symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
species:9823 "Sus scrofa" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=IEA] InterPro:IPR027248
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 PANTHER:PTHR12777
EMBL:F14730 Uniprot:Q29329
Length = 50
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 18/25 (72%), Positives = 18/25 (72%)
Query: 19 TGPLSVLMMSVKNNTQVLINCRNNK 43
TGPLSV S K TQVLINCRN K
Sbjct: 26 TGPLSVXTQSXKTXTQVLINCRNTK 50
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.136 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 107 94 0.00091 102 3 11 22 0.46 29
29 0.42 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 547 (58 KB)
Total size of DFA: 109 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.47u 0.24s 11.71t Elapsed: 00:00:00
Total cpu time: 11.47u 0.24s 11.71t Elapsed: 00:00:00
Start: Fri May 10 09:20:38 2013 End: Fri May 10 09:20:38 2013