Query 033955
Match_columns 107
No_of_seqs 107 out of 445
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:09:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 7.6E-38 1.6E-42 258.6 9.1 96 1-97 375-470 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 9.1E-36 2E-40 229.0 8.8 91 1-93 119-209 (254)
3 PF07002 Copine: Copine; Inte 100.0 3.9E-33 8.5E-38 199.3 8.7 77 1-78 70-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 99.8 7.8E-19 1.7E-23 131.4 9.2 88 11-100 77-164 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.4 2.7E-13 5.9E-18 99.1 7.1 88 4-91 69-165 (199)
6 cd01471 vWA_micronemal_protein 98.3 2.4E-06 5.2E-11 61.1 7.0 82 11-92 79-161 (186)
7 smart00327 VWA von Willebrand 98.3 2.6E-06 5.6E-11 58.7 6.8 90 5-94 67-160 (177)
8 cd00198 vWFA Von Willebrand fa 98.3 6E-06 1.3E-10 55.0 7.4 87 4-92 65-155 (161)
9 cd01461 vWA_interalpha_trypsin 98.2 6.2E-06 1.3E-10 57.4 7.6 82 5-90 68-150 (171)
10 cd01463 vWA_VGCC_like VWA Volt 98.2 1.1E-05 2.4E-10 58.2 8.8 86 4-89 82-176 (190)
11 cd01450 vWFA_subfamily_ECM Von 98.1 1.1E-05 2.3E-10 55.1 6.6 75 16-90 79-153 (161)
12 cd01464 vWA_subfamily VWA subf 98.1 1.2E-05 2.5E-10 57.4 7.0 88 8-95 70-164 (176)
13 cd01466 vWA_C3HC4_type VWA C3H 98.0 3.8E-05 8.3E-10 54.0 6.9 81 3-89 63-144 (155)
14 cd01465 vWA_subgroup VWA subgr 97.9 0.00012 2.5E-09 51.0 9.0 82 5-88 63-149 (170)
15 cd01482 vWA_collagen_alphaI-XI 97.9 6.3E-05 1.4E-09 53.0 7.5 84 6-92 67-153 (164)
16 cd01454 vWA_norD_type norD typ 97.9 9.9E-05 2.2E-09 52.4 8.2 73 5-81 72-154 (174)
17 cd01473 vWA_CTRP CTRP for CS 97.9 7E-05 1.5E-09 54.9 7.4 79 13-91 81-161 (192)
18 cd01476 VWA_integrin_invertebr 97.7 0.00025 5.3E-09 49.4 8.2 82 5-88 67-153 (163)
19 cd01472 vWA_collagen von Wille 97.7 0.00018 3.8E-09 50.5 7.2 86 4-91 65-152 (164)
20 cd01474 vWA_ATR ATR (Anthrax T 97.7 0.00016 3.4E-09 52.0 6.2 84 8-92 71-157 (185)
21 cd01480 vWA_collagen_alpha_1-V 97.6 0.00032 6.9E-09 50.6 7.7 89 3-93 73-164 (186)
22 cd01462 VWA_YIEM_type VWA YIEM 97.5 0.0008 1.7E-08 46.5 8.0 70 6-79 64-134 (152)
23 TIGR03788 marine_srt_targ mari 97.5 0.00063 1.4E-08 57.6 8.2 82 4-89 336-418 (596)
24 PF13768 VWA_3: von Willebrand 97.4 0.00071 1.5E-08 46.9 6.6 78 5-88 65-145 (155)
25 cd01469 vWA_integrins_alpha_su 97.4 0.001 2.2E-08 47.7 7.5 75 6-80 67-143 (177)
26 cd01456 vWA_ywmD_type VWA ywmD 97.3 0.00057 1.2E-08 49.9 5.8 81 3-89 102-189 (206)
27 cd01451 vWA_Magnesium_chelatas 97.3 0.0019 4.1E-08 46.2 7.7 83 5-88 64-153 (178)
28 cd01481 vWA_collagen_alpha3-VI 97.2 0.0021 4.5E-08 46.0 7.5 85 5-92 66-156 (165)
29 cd01467 vWA_BatA_type VWA BatA 97.2 0.0012 2.5E-08 46.6 6.1 64 12-79 78-142 (180)
30 cd01470 vWA_complement_factors 97.2 0.0021 4.6E-08 46.5 7.4 79 14-92 82-178 (198)
31 PF00092 VWA: von Willebrand f 97.2 0.00094 2E-08 46.2 5.1 80 10-89 72-153 (178)
32 cd01475 vWA_Matrilin VWA_Matri 97.1 0.002 4.3E-08 47.8 6.9 84 5-91 68-157 (224)
33 PTZ00441 sporozoite surface pr 97.0 0.003 6.6E-08 54.0 7.7 76 10-86 120-196 (576)
34 PF13519 VWA_2: von Willebrand 96.9 0.0072 1.6E-07 41.2 7.5 80 4-89 63-148 (172)
35 cd01453 vWA_transcription_fact 96.8 0.01 2.2E-07 43.2 8.1 74 4-79 72-146 (183)
36 cd01477 vWA_F09G8-8_type VWA F 96.8 0.0085 1.8E-07 44.2 7.4 71 10-80 100-172 (193)
37 PF09967 DUF2201: VWA-like dom 96.6 0.0062 1.3E-07 42.2 5.2 66 8-88 56-125 (126)
38 cd01452 VWA_26S_proteasome_sub 96.5 0.029 6.4E-07 41.6 8.9 77 3-80 71-147 (187)
39 PRK13685 hypothetical protein; 96.4 0.013 2.9E-07 46.1 6.9 78 3-80 152-239 (326)
40 TIGR02031 BchD-ChlD magnesium 96.2 0.032 7E-07 47.6 8.5 76 3-80 468-559 (589)
41 PRK13406 bchD magnesium chelat 96.1 0.033 7.1E-07 47.8 8.0 82 5-88 464-556 (584)
42 cd01460 vWA_midasin VWA_Midasi 95.7 0.065 1.4E-06 41.9 7.8 66 15-80 137-205 (266)
43 TIGR02442 Cob-chelat-sub cobal 95.4 0.093 2E-06 45.1 8.1 76 5-80 529-611 (633)
44 TIGR03436 acidobact_VWFA VWFA- 94.2 0.36 7.9E-06 36.9 8.0 65 14-79 138-204 (296)
45 TIGR00868 hCaCC calcium-activa 93.5 0.45 9.8E-06 42.8 8.2 73 12-89 378-450 (863)
46 COG1240 ChlD Mg-chelatase subu 93.3 0.8 1.7E-05 36.0 8.5 79 3-81 140-224 (261)
47 PF05762 VWA_CoxE: VWA domain 93.1 0.25 5.4E-06 36.9 5.2 50 13-66 126-176 (222)
48 cd01458 vWA_ku Ku70/Ku80 N-ter 91.1 1.7 3.6E-05 31.9 7.6 66 14-81 103-174 (218)
49 PF11775 CobT_C: Cobalamin bio 91.1 1.1 2.3E-05 34.4 6.6 77 3-79 66-187 (219)
50 PRK10997 yieM hypothetical pro 89.0 2.1 4.5E-05 36.3 7.3 74 12-89 392-468 (487)
51 COG4548 NorD Nitric oxide redu 88.0 1.3 2.9E-05 38.3 5.5 73 13-89 529-610 (637)
52 cd01455 vWA_F11C1-5a_type Von 87.9 1.3 2.7E-05 33.2 4.8 48 40-87 111-160 (191)
53 COG2425 Uncharacterized protei 87.8 1.6 3.4E-05 36.6 5.8 61 12-76 342-405 (437)
54 COG4245 TerY Uncharacterized p 87.4 2.2 4.9E-05 32.3 5.9 80 10-89 72-159 (207)
55 TIGR01651 CobT cobaltochelatas 82.4 3.5 7.5E-05 35.9 5.6 44 36-79 511-567 (600)
56 COG3864 Uncharacterized protei 58.1 9.3 0.0002 31.3 2.5 49 14-78 325-373 (396)
57 TIGR00381 cdhD CO dehydrogenas 55.6 29 0.00062 28.9 5.0 56 28-86 143-207 (389)
58 PF05165 GGDN: GGDN family; I 54.3 11 0.00023 29.5 2.2 46 39-85 49-95 (246)
59 PF04285 DUF444: Protein of un 49.0 36 0.00078 28.5 4.7 49 13-63 309-360 (421)
60 PF02192 PI3K_p85B: PI3-kinase 48.3 21 0.00046 23.0 2.6 41 60-104 18-66 (78)
61 PF07972 Flavodoxin_NdrI: NrdI 47.6 40 0.00087 23.4 4.1 52 38-89 37-92 (122)
62 COG3552 CoxE Protein containin 46.6 53 0.0012 27.4 5.2 60 3-66 276-338 (395)
63 TIGR02877 spore_yhbH sporulati 46.5 30 0.00065 28.5 3.8 54 13-70 265-321 (371)
64 KOG2353 L-type voltage-depende 44.2 1E+02 0.0022 29.0 7.1 85 2-86 292-382 (1104)
65 PF06415 iPGM_N: BPG-independe 41.9 53 0.0012 25.1 4.3 55 20-78 13-71 (223)
66 PF04056 Ssl1: Ssl1-like; Int 41.6 1.3E+02 0.0027 22.5 6.2 56 21-79 80-140 (193)
67 PRK08105 flavodoxin; Provision 38.9 1.1E+02 0.0023 21.4 5.2 42 41-82 51-97 (149)
68 PRK09004 FMN-binding protein M 37.6 1.1E+02 0.0023 21.3 5.1 42 41-82 47-95 (146)
69 COG3959 Transketolase, N-termi 37.4 52 0.0011 25.7 3.6 42 37-79 138-179 (243)
70 COG4867 Uncharacterized protei 35.7 41 0.00088 29.0 3.1 58 17-78 533-610 (652)
71 KOG0785 Isocitrate dehydrogena 35.5 93 0.002 25.5 4.9 42 38-79 33-74 (365)
72 KOG1532 GTPase XAB1, interacts 35.2 23 0.00049 28.9 1.4 25 66-90 16-41 (366)
73 PRK08883 ribulose-phosphate 3- 34.8 1.7E+02 0.0038 21.8 6.1 28 46-78 170-197 (220)
74 PRK08745 ribulose-phosphate 3- 34.0 2.1E+02 0.0045 21.6 6.7 57 13-78 145-201 (223)
75 PRK09271 flavodoxin; Provision 33.7 1E+02 0.0022 21.5 4.5 44 40-83 51-99 (160)
76 PRK05325 hypothetical protein; 33.3 87 0.0019 26.1 4.6 50 12-63 284-336 (401)
77 PF00993 MHC_II_alpha: Class I 33.1 28 0.00061 22.4 1.4 26 71-96 6-31 (82)
78 PRK09722 allulose-6-phosphate 32.2 1.8E+02 0.0039 22.1 5.9 55 13-76 143-197 (229)
79 PF08459 UvrC_HhH_N: UvrC Heli 31.8 65 0.0014 23.2 3.2 69 14-87 53-121 (155)
80 PF11426 Tn7_TnsC_Int: Tn7 tra 31.5 12 0.00026 22.1 -0.5 15 86-100 7-21 (48)
81 PRK09472 ftsA cell division pr 31.2 48 0.001 27.0 2.8 37 47-83 46-89 (420)
82 smart00842 FtsA Cell division 30.9 57 0.0012 23.3 2.8 40 47-86 37-83 (187)
83 PRK04452 acetyl-CoA decarbonyl 30.2 83 0.0018 25.3 3.9 57 27-86 78-143 (319)
84 PRK02240 GTP cyclohydrolase II 29.4 64 0.0014 25.3 3.0 44 41-85 54-98 (254)
85 PF02832 Flavi_glycop_C: Flavi 28.6 36 0.00078 23.0 1.4 15 68-82 77-91 (97)
86 COG2241 CobL Precorrin-6B meth 28.5 39 0.00084 25.6 1.7 14 72-85 2-15 (210)
87 PF07632 DUF1593: Protein of u 27.6 49 0.0011 26.0 2.1 32 44-75 2-35 (260)
88 PRK07308 flavodoxin; Validated 27.1 1.7E+02 0.0038 19.7 4.7 34 49-82 61-95 (146)
89 PF02601 Exonuc_VII_L: Exonucl 26.2 53 0.0012 25.5 2.1 19 56-78 97-115 (319)
90 PLN00115 pollen allergen group 26.1 1.3E+02 0.0029 20.7 3.9 15 38-52 33-47 (118)
91 PF04095 NAPRTase: Nicotinate 26.1 2.9E+02 0.0063 20.9 6.4 57 18-79 122-182 (245)
92 smart00331 PP2C_SIG Sigma fact 25.9 1.1E+02 0.0023 21.3 3.5 26 41-66 149-176 (193)
93 COG2382 Fes Enterochelin ester 25.4 1.2E+02 0.0026 24.3 4.0 41 39-81 96-140 (299)
94 PF07431 DUF1512: Protein of u 25.3 90 0.0019 25.7 3.3 24 57-80 327-350 (355)
95 PRK08091 ribulose-phosphate 3- 24.9 2.7E+02 0.0059 21.2 5.8 56 13-77 153-208 (228)
96 PRK11053 dihydropteridine redu 24.5 2.8E+02 0.006 20.1 7.4 57 19-77 23-87 (217)
97 COG1436 NtpG Archaeal/vacuolar 24.1 85 0.0018 21.2 2.6 39 40-79 46-84 (104)
98 TIGR00333 nrdI ribonucleoside- 23.8 2.1E+02 0.0046 19.7 4.6 43 40-84 36-78 (125)
99 PF00590 TP_methylase: Tetrapy 23.1 71 0.0015 22.6 2.2 14 72-85 2-15 (210)
100 KOG2943 Predicted glyoxalase [ 23.0 69 0.0015 25.4 2.2 75 4-97 207-288 (299)
101 PRK03600 nrdI ribonucleotide r 22.9 2.7E+02 0.0058 19.3 5.0 46 39-84 39-88 (134)
102 PRK02551 flavoprotein NrdI; Pr 22.8 1.4E+02 0.0031 21.4 3.6 48 39-86 54-111 (154)
103 PF09383 NIL: NIL domain; Int 22.5 1E+02 0.0022 18.7 2.5 57 9-65 5-69 (76)
104 PRK09455 rseB anti-sigma E fac 21.2 2.9E+02 0.0063 22.0 5.5 52 38-103 41-92 (319)
105 PF12724 Flavodoxin_5: Flavodo 21.1 1.4E+02 0.0031 20.2 3.3 77 11-89 47-125 (143)
106 KOG1202 Animal-type fatty acid 20.9 2.3E+02 0.0051 28.0 5.4 58 3-65 2170-2232(2376)
107 PF00106 adh_short: short chai 20.9 78 0.0017 21.1 1.9 50 50-99 59-110 (167)
108 TIGR03646 YtoQ_fam YtoQ family 20.7 1.1E+02 0.0024 22.1 2.6 26 48-73 5-31 (144)
109 cd00761 Glyco_tranf_GTA_type G 20.5 1.5E+02 0.0033 18.2 3.1 39 20-62 9-47 (156)
110 PRK10416 signal recognition pa 20.3 1.1E+02 0.0023 24.3 2.8 47 44-93 263-309 (318)
111 PF13353 Fer4_12: 4Fe-4S singl 20.1 2.3E+02 0.005 18.5 4.1 44 8-57 53-100 (139)
112 PHA01749 coat protein 20.1 95 0.0021 21.5 2.2 30 11-40 22-51 (134)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-38 Score=258.59 Aligned_cols=96 Identities=55% Similarity=0.745 Sum_probs=90.9
Q ss_pred ChHHHHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCC
Q 033955 1 MAAYASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGA 80 (107)
Q Consensus 1 leaY~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~ 80 (107)
|+|||+++++|+|+|||||||||++|+++|+++.. ...+||||||+|||+++||++|++||++||++||||||||||++
T Consensus 375 l~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~-~~~qY~VLlIitDG~vTdm~~T~~AIV~AS~lPlSIIiVGVGd~ 453 (529)
T KOG1327|consen 375 LEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGN-TAGQYHVLLIITDGVVTDMKETRDAIVSASDLPLSIIIVGVGDA 453 (529)
T ss_pred HHHHHhhcccccccCCCccHHHHHHHHHHHHHhcc-CCcceEEEEEEeCCccccHHHHHHHHHhhccCCeEEEEEEeCCC
Confidence 68999999999999999999999999999998754 67899999999999999999999999999999999999999999
Q ss_pred Cccccccccccccceee
Q 033955 81 DFTQMEVRNVFQLEYLL 97 (107)
Q Consensus 81 ~f~~m~~LD~d~~~~~~ 97 (107)
+|+.|++||+|+.+..-
T Consensus 454 df~~M~~lD~d~~~l~~ 470 (529)
T KOG1327|consen 454 DFDMMRELDGDDPKLRS 470 (529)
T ss_pred CHHHHHHhhcCCccccc
Confidence 99999999999988443
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=9.1e-36 Score=229.01 Aligned_cols=91 Identities=53% Similarity=0.707 Sum_probs=85.5
Q ss_pred ChHHHHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCC
Q 033955 1 MAAYASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGA 80 (107)
Q Consensus 1 leaY~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~ 80 (107)
|+||++++++++++|||+|+|||++|+++|++.. .+.+|+||||||||+++|+++|+++|++||++||||||||||++
T Consensus 119 l~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~--~~~~Y~VLLIiTDG~i~D~~~t~~aIv~AS~~PlSIiiVGVGd~ 196 (254)
T cd01459 119 LRAYREALPNVSLSGPTNFAPVIRAAANIAKASN--SQSKYHILLIITDGEITDMNETIKAIVEASKYPLSIVIVGVGDG 196 (254)
T ss_pred HHHHHHHhceeeecCcchHHHHHHHHHHHHHHhc--CCCceEEEEEECCCCcccHHHHHHHHHHHhcCCeEEEEEEeCCC
Confidence 5899999999999999999999999999999763 23479999999999999999999999999999999999999999
Q ss_pred Ccccccccccccc
Q 033955 81 DFTQMEVRNVFQL 93 (107)
Q Consensus 81 ~f~~m~~LD~d~~ 93 (107)
+|+.|++||+|+.
T Consensus 197 ~F~~M~~LD~d~~ 209 (254)
T cd01459 197 PFDAMERLDDDDG 209 (254)
T ss_pred ChHHHHHhcCccc
Confidence 9999999998775
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=3.9e-33 Score=199.35 Aligned_cols=77 Identities=57% Similarity=0.887 Sum_probs=73.7
Q ss_pred ChHHHHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeec
Q 033955 1 MAAYASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVG 78 (107)
Q Consensus 1 leaY~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG 78 (107)
|+|||+++++|+|+|||+|+|||++|+++|++ ..+++++|+||||||||+++|+++|+++|++||++||||||||||
T Consensus 70 l~~Y~~~~~~v~l~GPT~fapiI~~a~~~a~~-~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 70 LEAYRKALPKVQLSGPTNFAPIINHAAKIAKQ-SNQNGQQYFILLILTDGQITDMEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred HHHHHHHhhheEECCCccHHHHHHHHHHHHhh-hccCCceEEEEEEecccccccHHHHHHHHHHHccCCeEEEEEEeC
Confidence 58999999999999999999999999999997 446778999999999999999999999999999999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.78 E-value=7.8e-19 Score=131.36 Aligned_cols=88 Identities=20% Similarity=0.193 Sum_probs=77.3
Q ss_pred ccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCCCccccccccc
Q 033955 11 VALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGADFTQMEVRNV 90 (107)
Q Consensus 11 v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~m~~LD~ 90 (107)
+..+|.|+++|||+++.+.+.+.. ....+..+|++|||.++|.+++.++|++||++|+.|+|||+|+.+|+++++||.
T Consensus 77 ~~~~G~t~y~~vm~~v~~~y~~~~--~~~~P~~VlFiTDG~~~~~~~~~~~i~~as~~pifwqFVgiG~~~f~fL~kLD~ 154 (200)
T PF10138_consen 77 WGRMGGTNYAPVMEDVLDHYFKRE--PSDAPALVLFITDGGPDDRRAIEKLIREASDEPIFWQFVGIGDSNFGFLEKLDD 154 (200)
T ss_pred cCCCCCcchHHHHHHHHHHHhhcC--CCCCCeEEEEEecCCccchHHHHHHHHhccCCCeeEEEEEecCCcchHHHHhhc
Confidence 366799999999999999998653 234589999999999999999999999999999999999999999999999998
Q ss_pred cccceeeccc
Q 033955 91 FQLEYLLTSI 100 (107)
Q Consensus 91 d~~~~~~~~~ 100 (107)
..+|...+-+
T Consensus 155 l~gR~vDNa~ 164 (200)
T PF10138_consen 155 LAGRVVDNAG 164 (200)
T ss_pred cCCcccCCcC
Confidence 7776655443
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.44 E-value=2.7e-13 Score=99.13 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=70.0
Q ss_pred HHHhhccccccCCCChHHHHHHHHHHHHhcc--cCCCCceEEEEEEeCCCccCHHHHHHHHHHccCC-----CeEEEEEe
Q 033955 4 YASALNNVALAGPTLFGQVINTAARIAGQSL--SYDRSKYFVLLIITDGVLTDLQETKDALVRASDL-----PLSILIVG 76 (107)
Q Consensus 4 Y~~~l~~v~l~gPT~fapVI~~~~~~a~~~~--~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~l-----PiSiIiVG 76 (107)
..+.+.++++.|+|++.+.|+++++...+.. .+..+.|.+++|+|||..+|.+++.++|++|++. |+.|.+||
T Consensus 69 v~~~~~~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~ 148 (199)
T cd01457 69 VDQLFAENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQ 148 (199)
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEE
Confidence 4456678889999999999999986544321 1233458999999999999999999999999863 78888888
Q ss_pred ecC--CCcccccccccc
Q 033955 77 VGG--ADFTQMEVRNVF 91 (107)
Q Consensus 77 vG~--~~f~~m~~LD~d 91 (107)
||+ +.|.+|++||++
T Consensus 149 vG~~~~~~~~L~~ld~~ 165 (199)
T cd01457 149 IGRDPAATAFLKALDDQ 165 (199)
T ss_pred eCCcHHHHHHHHHHhHH
Confidence 886 489999999944
No 6
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.32 E-value=2.4e-06 Score=61.15 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=62.0
Q ss_pred ccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC-CCcccccccc
Q 033955 11 VALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG-ADFTQMEVRN 89 (107)
Q Consensus 11 v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~-~~f~~m~~LD 89 (107)
....|.|++++.++.+.+...+..........+++++|||..++..++.++..+..+.++.+..||+|. .+...|+.|-
T Consensus 79 ~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~a~~l~~~gv~v~~igiG~~~d~~~l~~ia 158 (186)
T cd01471 79 YYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTLKEARKLRERGVIIAVLGVGQGVNHEENRSLV 158 (186)
T ss_pred cCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcchhHHHHHHHHCCCEEEEEEeehhhCHHHHHHhc
Confidence 357899999999999987776531122234568899999998877766666666667789999999996 5778888877
Q ss_pred ccc
Q 033955 90 VFQ 92 (107)
Q Consensus 90 ~d~ 92 (107)
+.+
T Consensus 159 ~~~ 161 (186)
T cd01471 159 GCD 161 (186)
T ss_pred CCC
Confidence 654
No 7
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.31 E-value=2.6e-06 Score=58.68 Aligned_cols=90 Identities=22% Similarity=0.209 Sum_probs=69.0
Q ss_pred HHhhccccc--cCCCChHHHHHHHHHHHHhcc-cCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCC-
Q 033955 5 ASALNNVAL--AGPTLFGQVINTAARIAGQSL-SYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGA- 80 (107)
Q Consensus 5 ~~~l~~v~l--~gPT~fapVI~~~~~~a~~~~-~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~- 80 (107)
...+..+.+ .|.|++...++++.+...+.. ........+++|+|||...|.+...+.+..+.+.++.++.||+|+.
T Consensus 67 ~~~i~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~~~i~i~~i~~~~~~ 146 (177)
T smart00327 67 LEALASLSYKLGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKRSGVKVFVVGVGNDV 146 (177)
T ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEccCcc
Confidence 344556664 788999999999998876321 1222336799999999998767778888888888899999999987
Q ss_pred Cccccccccccccc
Q 033955 81 DFTQMEVRNVFQLE 94 (107)
Q Consensus 81 ~f~~m~~LD~d~~~ 94 (107)
+...|+.|.+....
T Consensus 147 ~~~~l~~~~~~~~~ 160 (177)
T smart00327 147 DEEELKKLASAPGG 160 (177)
T ss_pred CHHHHHHHhCCCcc
Confidence 89999998855443
No 8
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.25 E-value=6e-06 Score=55.03 Aligned_cols=87 Identities=18% Similarity=0.260 Sum_probs=68.2
Q ss_pred HHHhhcccc--ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHH-HHHHHHHHccCCCeEEEEEeecC-
Q 033955 4 YASALNNVA--LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQ-ETKDALVRASDLPLSILIVGVGG- 79 (107)
Q Consensus 4 Y~~~l~~v~--l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~-~t~~~Iv~As~lPiSiIiVGvG~- 79 (107)
..+.+..++ ..|.|++.+.++.+.+...+.. ......+++++|||...+.. +..+.+..++...+.+.+||+|+
T Consensus 65 ~~~~~~~~~~~~~~~t~~~~al~~~~~~~~~~~--~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~~ 142 (161)
T cd00198 65 LLEAIDALKKGLGGGTNIGAALRLALELLKSAK--RPNARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGDD 142 (161)
T ss_pred HHHHHHhcccCCCCCccHHHHHHHHHHHhcccC--CCCCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCCC
Confidence 445566665 7899999999999998876532 24568899999999887654 55566666777799999999998
Q ss_pred CCccccccccccc
Q 033955 80 ADFTQMEVRNVFQ 92 (107)
Q Consensus 80 ~~f~~m~~LD~d~ 92 (107)
.+-..++.|+++.
T Consensus 143 ~~~~~l~~l~~~~ 155 (161)
T cd00198 143 ANEDELKEIADKT 155 (161)
T ss_pred CCHHHHHHHhccc
Confidence 7888888888765
No 9
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.25 E-value=6.2e-06 Score=57.39 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=64.0
Q ss_pred HHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC-CCcc
Q 033955 5 ASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG-ADFT 83 (107)
Q Consensus 5 ~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~-~~f~ 83 (107)
.+.+..+++.|.|++...|+.+.+..... ...-..++++|||..++..+..+.+.++.+.++.+..||+|. .+..
T Consensus 68 ~~~l~~~~~~g~T~l~~al~~a~~~l~~~----~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~~~~~~ 143 (171)
T cd01461 68 IEYVNRLQALGGTNMNDALEAALELLNSS----PGSVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGSDVNTY 143 (171)
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHhhccC----CCCccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCCccCHH
Confidence 34556678899999999999988776531 234578999999998888888888888877788888999996 5667
Q ss_pred ccccccc
Q 033955 84 QMEVRNV 90 (107)
Q Consensus 84 ~m~~LD~ 90 (107)
.|+.+-.
T Consensus 144 ~l~~ia~ 150 (171)
T cd01461 144 LLERLAR 150 (171)
T ss_pred HHHHHHH
Confidence 7777653
No 10
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.23 E-value=1.1e-05 Score=58.24 Aligned_cols=86 Identities=19% Similarity=0.266 Sum_probs=61.3
Q ss_pred HHHhhccccccCCCChHHHHHHHHHHHHhcc-----cCCCCceEEEEEEeCCCccCHHHHHHHHHHc--cCCCeEEEEEe
Q 033955 4 YASALNNVALAGPTLFGQVINTAARIAGQSL-----SYDRSKYFVLLIITDGVLTDLQETKDALVRA--SDLPLSILIVG 76 (107)
Q Consensus 4 Y~~~l~~v~l~gPT~fapVI~~~~~~a~~~~-----~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~A--s~lPiSiIiVG 76 (107)
..+.+..+++.|.|++...++.+.+..++.. ......-..+++||||..++..+..+.+... ...|+.|..||
T Consensus 82 ~~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~v~i~tig 161 (190)
T cd01463 82 LKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYNWDKNSEIPVRVFTYL 161 (190)
T ss_pred HHHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhcccccCCCcEEEEEEe
Confidence 4556778889999999999999887766421 0112234688999999998877766665432 23589999999
Q ss_pred ecCC--Ccccccccc
Q 033955 77 VGGA--DFTQMEVRN 89 (107)
Q Consensus 77 vG~~--~f~~m~~LD 89 (107)
+|.+ +...|++|=
T Consensus 162 iG~~~~d~~~L~~lA 176 (190)
T cd01463 162 IGREVTDRREIQWMA 176 (190)
T ss_pred cCCccccchHHHHHH
Confidence 9974 566676664
No 11
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.13 E-value=1.1e-05 Score=55.07 Aligned_cols=75 Identities=23% Similarity=0.252 Sum_probs=57.9
Q ss_pred CCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCCCccccccccc
Q 033955 16 PTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGADFTQMEVRNV 90 (107)
Q Consensus 16 PT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~m~~LD~ 90 (107)
.|++.+.++.+.+...+..........+++++|||..++..+..+++....+.++.++.||+|+.+.+.|++|=+
T Consensus 79 ~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 79 GTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred CccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccccCHHHHHHHhC
Confidence 799999999998887654222235678999999998877555666666666679999999999877888877754
No 12
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.12 E-value=1.2e-05 Score=57.40 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=63.3
Q ss_pred hccccccCCCChHHHHHHHHHHHHhcccC-----CCCceEEEEEEeCCCccCH-HHHHHHHHHccCCCeEEEEEeecC-C
Q 033955 8 LNNVALAGPTLFGQVINTAARIAGQSLSY-----DRSKYFVLLIITDGVLTDL-QETKDALVRASDLPLSILIVGVGG-A 80 (107)
Q Consensus 8 l~~v~l~gPT~fapVI~~~~~~a~~~~~~-----~~~~Y~vLlIlTDG~i~D~-~~t~~~Iv~As~lPiSiIiVGvG~-~ 80 (107)
.+.++..|.|++.+.++++.+...+.... ......+++++|||..+|. ....+.+.++...++.|..||+|. .
T Consensus 70 ~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~~ 149 (176)
T cd01464 70 PPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPKA 149 (176)
T ss_pred CCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEecccc
Confidence 44567789999999999999886543210 1112347899999998764 444477888777788899999995 7
Q ss_pred Cccccccccccccce
Q 033955 81 DFTQMEVRNVFQLEY 95 (107)
Q Consensus 81 ~f~~m~~LD~d~~~~ 95 (107)
+...|++|-+.....
T Consensus 150 ~~~~L~~ia~~~~~~ 164 (176)
T cd01464 150 DLDTLKQITEGVPLL 164 (176)
T ss_pred CHHHHHHHHCCCccc
Confidence 888888888544433
No 13
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=97.95 E-value=3.8e-05 Score=53.96 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=59.2
Q ss_pred HHHHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC-CC
Q 033955 3 AYASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG-AD 81 (107)
Q Consensus 3 aY~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~-~~ 81 (107)
..++.++.+.+.|-|++..-++.+.+...+.. ....-.+++++|||..++. ..+..+.+.++.+..||+|. .+
T Consensus 63 ~~~~~i~~~~~~g~T~~~~al~~a~~~~~~~~--~~~~~~~iillTDG~~~~~----~~~~~~~~~~v~v~~igig~~~~ 136 (155)
T cd01466 63 SAKRVVDGLQAGGGTNVVGGLKKALKVLGDRR--QKNPVASIMLLSDGQDNHG----AVVLRADNAPIPIHTFGLGASHD 136 (155)
T ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHhhcc--cCCCceEEEEEcCCCCCcc----hhhhcccCCCceEEEEecCCCCC
Confidence 44567788889999999999999988865431 1123468999999987654 23344666799999999994 56
Q ss_pred cccccccc
Q 033955 82 FTQMEVRN 89 (107)
Q Consensus 82 f~~m~~LD 89 (107)
...|++|=
T Consensus 137 ~~~l~~iA 144 (155)
T cd01466 137 PALLAFIA 144 (155)
T ss_pred HHHHHHHH
Confidence 66666654
No 14
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=97.94 E-value=0.00012 Score=50.99 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=57.8
Q ss_pred HHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccC----HHHHHHHHHHccCCCeEEEEEeecC-
Q 033955 5 ASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTD----LQETKDALVRASDLPLSILIVGVGG- 79 (107)
Q Consensus 5 ~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D----~~~t~~~Iv~As~lPiSiIiVGvG~- 79 (107)
++.+.++++.|.|++..-++.+.+...+... +.....++++|||..++ .++..+.+..+.+..+-|..||+|+
T Consensus 63 ~~~l~~~~~~g~T~~~~al~~a~~~~~~~~~--~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~ 140 (170)
T cd01465 63 LAAIDRLTAGGSTAGGAGIQLGYQEAQKHFV--PGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDN 140 (170)
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHhhcC--CCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCC
Confidence 4567778889999999999999888765421 12225578999997643 4556666666666788888899995
Q ss_pred CCccccccc
Q 033955 80 ADFTQMEVR 88 (107)
Q Consensus 80 ~~f~~m~~L 88 (107)
.+...|+++
T Consensus 141 ~~~~~l~~i 149 (170)
T cd01465 141 YNEDLMEAI 149 (170)
T ss_pred cCHHHHHHH
Confidence 355555554
No 15
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.92 E-value=6.3e-05 Score=53.05 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=58.2
Q ss_pred Hhhcccc-ccCCCChHHHHHHHHHHHHhcc-cCCCCceEEEEEEeCCCccC-HHHHHHHHHHccCCCeEEEEEeecCCCc
Q 033955 6 SALNNVA-LAGPTLFGQVINTAARIAGQSL-SYDRSKYFVLLIITDGVLTD-LQETKDALVRASDLPLSILIVGVGGADF 82 (107)
Q Consensus 6 ~~l~~v~-l~gPT~fapVI~~~~~~a~~~~-~~~~~~Y~vLlIlTDG~i~D-~~~t~~~Iv~As~lPiSiIiVGvG~~~f 82 (107)
+.+.++. ..|.|+...-|+.+.+...+.. +.......+++++|||..+| .++..+.+. +.++.|..||+|+.+-
T Consensus 67 ~~l~~~~~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~~~~~a~~lk---~~gi~i~~ig~g~~~~ 143 (164)
T cd01482 67 AAIKNLPYKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDDVELPARVLR---NLGVNVFAVGVKDADE 143 (164)
T ss_pred HHHHhCcCCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCchHHHHHHHHH---HCCCEEEEEecCcCCH
Confidence 4455555 5789999999988887654421 22334577899999998764 344444443 4688999999999887
Q ss_pred cccccccccc
Q 033955 83 TQMEVRNVFQ 92 (107)
Q Consensus 83 ~~m~~LD~d~ 92 (107)
..|++|-+..
T Consensus 144 ~~L~~ia~~~ 153 (164)
T cd01482 144 SELKMIASKP 153 (164)
T ss_pred HHHHHHhCCC
Confidence 7777777654
No 16
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=97.89 E-value=9.9e-05 Score=52.40 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=56.2
Q ss_pred HHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCH----------HHHHHHHHHccCCCeEEEE
Q 033955 5 ASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDL----------QETKDALVRASDLPLSILI 74 (107)
Q Consensus 5 ~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~----------~~t~~~Iv~As~lPiSiIi 74 (107)
++.+..+.+.|.|++++.|+.+.+...+. ...-.++++||||..++. ++..+++.++.+..+.+..
T Consensus 72 ~~~l~~~~~~g~T~~~~al~~a~~~l~~~----~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ 147 (174)
T cd01454 72 RKRLAALSPGGNTRDGAAIRHAAERLLAR----PEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFG 147 (174)
T ss_pred HHHHHccCCCCCCcHHHHHHHHHHHHhcC----CCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEE
Confidence 45566778888999999999998876643 233568999999988753 3444558888888999999
Q ss_pred EeecCCC
Q 033955 75 VGVGGAD 81 (107)
Q Consensus 75 VGvG~~~ 81 (107)
||+|+..
T Consensus 148 igig~~~ 154 (174)
T cd01454 148 ITIDRDA 154 (174)
T ss_pred EEecCcc
Confidence 9999855
No 17
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.87 E-value=7e-05 Score=54.94 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=58.3
Q ss_pred ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCH--HHHHHHHHHccCCCeEEEEEeecCCCccccccccc
Q 033955 13 LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDL--QETKDALVRASDLPLSILIVGVGGADFTQMEVRNV 90 (107)
Q Consensus 13 l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~--~~t~~~Iv~As~lPiSiIiVGvG~~~f~~m~~LD~ 90 (107)
..|.|+....|+.+.+......+......-++++||||.-+|. ....++...+.+..+.+..||||..+-..++.+=+
T Consensus 81 ~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~ 160 (192)
T cd01473 81 SGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAASENKLKLLAG 160 (192)
T ss_pred CCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccccHHHHHHhcC
Confidence 4688999999998877755432222234789999999988764 34556666777789999999999877666666665
Q ss_pred c
Q 033955 91 F 91 (107)
Q Consensus 91 d 91 (107)
.
T Consensus 161 ~ 161 (192)
T cd01473 161 C 161 (192)
T ss_pred C
Confidence 4
No 18
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.75 E-value=0.00025 Score=49.40 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=54.7
Q ss_pred HHhhccccc-cCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCcc-CHHHHHHHHHHccCCCeEEEEEeecCC--
Q 033955 5 ASALNNVAL-AGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLT-DLQETKDALVRASDLPLSILIVGVGGA-- 80 (107)
Q Consensus 5 ~~~l~~v~l-~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~-D~~~t~~~Iv~As~lPiSiIiVGvG~~-- 80 (107)
.+.+..++. .|+|+....|+++.+...+..........+++++|||..+ +..+..+.+.+ ...+.+.-||+|+.
T Consensus 67 ~~~i~~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~~l~~--~~~v~v~~vg~g~~~~ 144 (163)
T cd01476 67 LEKVDNLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDPEKQARILRA--VPNIETFAVGTGDPGT 144 (163)
T ss_pred HHHHHhCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCchHHHHHHHhh--cCCCEEEEEECCCccc
Confidence 345556664 5779999999999888753222222335899999999775 44455566655 46788999999985
Q ss_pred -Cccccccc
Q 033955 81 -DFTQMEVR 88 (107)
Q Consensus 81 -~f~~m~~L 88 (107)
+...++.+
T Consensus 145 ~~~~~L~~i 153 (163)
T cd01476 145 VDTEELHSI 153 (163)
T ss_pred cCHHHHHHH
Confidence 34444444
No 19
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=97.72 E-value=0.00018 Score=50.49 Aligned_cols=86 Identities=21% Similarity=0.194 Sum_probs=57.3
Q ss_pred HHHhhccccc-cCCCChHHHHHHHHHHHHhcc-cCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCCC
Q 033955 4 YASALNNVAL-AGPTLFGQVINTAARIAGQSL-SYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGAD 81 (107)
Q Consensus 4 Y~~~l~~v~l-~gPT~fapVI~~~~~~a~~~~-~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~ 81 (107)
.++.+.++++ .|.|+..+.++++.+.-.+.. ......-.+++++|||..++.. .++..+..+..+.+..||+|+.+
T Consensus 65 ~~~~l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~--~~~~~~l~~~gv~i~~ig~g~~~ 142 (164)
T cd01472 65 VLEAVKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDV--EEPAVELKQAGIEVFAVGVKNAD 142 (164)
T ss_pred HHHHHHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchH--HHHHHHHHHCCCEEEEEECCcCC
Confidence 4556677776 678999999999988665421 1122346778889999776422 22333344468889999999877
Q ss_pred cccccccccc
Q 033955 82 FTQMEVRNVF 91 (107)
Q Consensus 82 f~~m~~LD~d 91 (107)
.+.|+.+=++
T Consensus 143 ~~~L~~ia~~ 152 (164)
T cd01472 143 EEELKQIASD 152 (164)
T ss_pred HHHHHHHHCC
Confidence 7777666543
No 20
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.65 E-value=0.00016 Score=52.00 Aligned_cols=84 Identities=18% Similarity=0.087 Sum_probs=57.0
Q ss_pred hccccccCCCChHHHHHHHHHHHHhcc-cCCCCceEEEEEEeCCCccC--HHHHHHHHHHccCCCeEEEEEeecCCCccc
Q 033955 8 LNNVALAGPTLFGQVINTAARIAGQSL-SYDRSKYFVLLIITDGVLTD--LQETKDALVRASDLPLSILIVGVGGADFTQ 84 (107)
Q Consensus 8 l~~v~l~gPT~fapVI~~~~~~a~~~~-~~~~~~Y~vLlIlTDG~i~D--~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~ 84 (107)
++.+.+.|.|+...-|+.+.+...+.. +..... .+++++|||..+| ...+.++...+.+..+.|.-||+|+.+...
T Consensus 71 l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~-~~villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv~~~~~~~ 149 (185)
T cd01474 71 LKKVTPSGQTYIHEGLENANEQIFNRNGGGRETV-SVIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGVTDFLKSQ 149 (185)
T ss_pred HhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCC-eEEEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEeechhhHHH
Confidence 456667899999999999887664321 111122 7889999998843 334444444555567888889998877777
Q ss_pred cccccccc
Q 033955 85 MEVRNVFQ 92 (107)
Q Consensus 85 m~~LD~d~ 92 (107)
|+.+=++.
T Consensus 150 L~~iA~~~ 157 (185)
T cd01474 150 LINIADSK 157 (185)
T ss_pred HHHHhCCC
Confidence 77776443
No 21
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.65 E-value=0.00032 Score=50.64 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=62.8
Q ss_pred HHHHhhcccc-ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccC--HHHHHHHHHHccCCCeEEEEEeecC
Q 033955 3 AYASALNNVA-LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTD--LQETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 3 aY~~~l~~v~-l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D--~~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
..++.+.+++ ..|.|+...-|+++.+..... .....-.+++++|||..++ .....++...+.+..+.+..||+|+
T Consensus 73 ~l~~~i~~l~~~gg~T~~~~AL~~a~~~l~~~--~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~ 150 (186)
T cd01480 73 SLKEAVDNLEYIGGGTFTDCALKYATEQLLEG--SHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS 150 (186)
T ss_pred HHHHHHHhCccCCCCccHHHHHHHHHHHHhcc--CCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc
Confidence 4566777776 478999999999998877642 2234567889999997643 2233455666667899999999998
Q ss_pred CCcccccccccccc
Q 033955 80 ADFTQMEVRNVFQL 93 (107)
Q Consensus 80 ~~f~~m~~LD~d~~ 93 (107)
.+-..|+++=+...
T Consensus 151 ~~~~~L~~IA~~~~ 164 (186)
T cd01480 151 QNEEPLSRIACDGK 164 (186)
T ss_pred cchHHHHHHHcCCc
Confidence 76666666554433
No 22
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.52 E-value=0.0008 Score=46.47 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=46.0
Q ss_pred HhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCC-CccCHHHHHHHHHHccCCCeEEEEEeecC
Q 033955 6 SALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDG-VLTDLQETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 6 ~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG-~i~D~~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
+.+....+.|.|++++.+..+.+...+. ...-.+++++||| +..+..+..++...+....+-+-.+|+|+
T Consensus 64 ~~l~~~~~~ggT~l~~al~~a~~~l~~~----~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~ 134 (152)
T cd01462 64 EFLSGVQLGGGTDINKALRYALELIERR----DPRKADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGD 134 (152)
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHHHhc----CCCCceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecC
Confidence 3455566789999999999998886643 1223588999999 55555555422233333345566677776
No 23
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.46 E-value=0.00063 Score=57.55 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=58.0
Q ss_pred HHHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCC-Cc
Q 033955 4 YASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGA-DF 82 (107)
Q Consensus 4 Y~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~-~f 82 (107)
..+.+..++..|.|++.+.|+.+.+.... .....--.+++||||.+.|..+..+.+..+. -...+-.||+|+. +.
T Consensus 336 a~~~i~~l~a~GgT~l~~aL~~a~~~~~~---~~~~~~~~iillTDG~~~~~~~~~~~~~~~~-~~~ri~tvGiG~~~n~ 411 (596)
T TIGR03788 336 ARQFVAGLQADGGTEMAGALSAALRDDGP---ESSGALRQVVFLTDGAVGNEDALFQLIRTKL-GDSRLFTVGIGSAPNS 411 (596)
T ss_pred HHHHHhhCCCCCCccHHHHHHHHHHhhcc---cCCCceeEEEEEeCCCCCCHHHHHHHHHHhc-CCceEEEEEeCCCcCH
Confidence 34557788899999999999998876321 1112334677899999988888877776553 2355667899974 67
Q ss_pred ccccccc
Q 033955 83 TQMEVRN 89 (107)
Q Consensus 83 ~~m~~LD 89 (107)
..|+.|=
T Consensus 412 ~lL~~lA 418 (596)
T TIGR03788 412 YFMRKAA 418 (596)
T ss_pred HHHHHHH
Confidence 7777664
No 24
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.40 E-value=0.00071 Score=46.88 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=55.8
Q ss_pred HHhhccccc-cCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCc-cCHHHHHHHHHHccCCCeEEEEEeecC-CC
Q 033955 5 ASALNNVAL-AGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVL-TDLQETKDALVRASDLPLSILIVGVGG-AD 81 (107)
Q Consensus 5 ~~~l~~v~l-~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i-~D~~~t~~~Iv~As~lPiSiIiVGvG~-~~ 81 (107)
.+.++++++ .|.|++.+.++.+.+.- ........++++|||.+ ...+++.+.+..+. -.+.+.-+|+|. .+
T Consensus 65 ~~~I~~~~~~~G~t~l~~aL~~a~~~~-----~~~~~~~~IilltDG~~~~~~~~i~~~v~~~~-~~~~i~~~~~g~~~~ 138 (155)
T PF13768_consen 65 LQWIKSLEANSGGTDLLAALRAALALL-----QRPGCVRAIILLTDGQPVSGEEEILDLVRRAR-GHIRIFTFGIGSDAD 138 (155)
T ss_pred HHHHHHhcccCCCccHHHHHHHHHHhc-----ccCCCccEEEEEEeccCCCCHHHHHHHHHhcC-CCceEEEEEECChhH
Confidence 455667788 99999999999887653 12234667788999996 44557777776543 557777799997 56
Q ss_pred ccccccc
Q 033955 82 FTQMEVR 88 (107)
Q Consensus 82 f~~m~~L 88 (107)
...|++|
T Consensus 139 ~~~L~~L 145 (155)
T PF13768_consen 139 ADFLREL 145 (155)
T ss_pred HHHHHHH
Confidence 6666665
No 25
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.39 E-value=0.001 Score=47.75 Aligned_cols=75 Identities=25% Similarity=0.244 Sum_probs=53.5
Q ss_pred Hhhcccc-ccCCCChHHHHHHHHHHHHhc-ccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCC
Q 033955 6 SALNNVA-LAGPTLFGQVINTAARIAGQS-LSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGA 80 (107)
Q Consensus 6 ~~l~~v~-l~gPT~fapVI~~~~~~a~~~-~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~ 80 (107)
+++..+. ..|.|+....|+.+.+..... .+.......+++++|||..+|-..+.+++..+....+-+.-||+|+.
T Consensus 67 ~~i~~~~~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 67 SLVKHISQLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLLKDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred HHHHhCccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccccHHHHHHHHHCCcEEEEEEeccc
Confidence 4455553 567899999999888775422 12223457789999999988765555566666678899999999974
No 26
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.34 E-value=0.00057 Score=49.91 Aligned_cols=81 Identities=26% Similarity=0.335 Sum_probs=53.8
Q ss_pred HHHHhhcccc-ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCH---HHHHHHHHHc--cCCCeEEEEEe
Q 033955 3 AYASALNNVA-LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDL---QETKDALVRA--SDLPLSILIVG 76 (107)
Q Consensus 3 aY~~~l~~v~-l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~---~~t~~~Iv~A--s~lPiSiIiVG 76 (107)
...+.+..++ ..|.|++..-|+.+.+... ...-..++++|||..++- .+..+.+... ..-++.+-.||
T Consensus 102 ~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~------~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~~ig 175 (206)
T cd01456 102 ALDAALNSLQTPTGWTPLAAALAEAAAYVD------PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVNVID 175 (206)
T ss_pred HHHHHHHhhcCCCCcChHHHHHHHHHHHhC------CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEEEEE
Confidence 3456778888 8999999999988876653 112268899999987653 2333333332 12478888899
Q ss_pred ecCC-Ccccccccc
Q 033955 77 VGGA-DFTQMEVRN 89 (107)
Q Consensus 77 vG~~-~f~~m~~LD 89 (107)
+|.. +...|+++=
T Consensus 176 iG~~~~~~~l~~iA 189 (206)
T cd01456 176 FGGDADRAELEAIA 189 (206)
T ss_pred ecCcccHHHHHHHH
Confidence 9964 455555553
No 27
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.26 E-value=0.0019 Score=46.18 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=56.0
Q ss_pred HHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCcc---C-HHHH-HHHHHHccCCCeEEEEEeecC
Q 033955 5 ASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLT---D-LQET-KDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 5 ~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~---D-~~~t-~~~Iv~As~lPiSiIiVGvG~ 79 (107)
++.+..+.+.|.|++..-+..+.+..++. ......-.++++||||..+ | .... .+....+...++.++.||+|.
T Consensus 64 ~~~l~~l~~~G~T~l~~aL~~a~~~l~~~-~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~ 142 (178)
T cd01451 64 KRRLARLPTGGGTPLAAGLLAAYELAAEQ-ARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEG 142 (178)
T ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHHHH-hcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 45677888899999999999998876221 1112234789999999765 2 2233 455555566788888899886
Q ss_pred CC--ccccccc
Q 033955 80 AD--FTQMEVR 88 (107)
Q Consensus 80 ~~--f~~m~~L 88 (107)
.+ -..|++|
T Consensus 143 ~~~~~~~l~~i 153 (178)
T cd01451 143 RPVRRGLAKDL 153 (178)
T ss_pred CccCccHHHHH
Confidence 43 3445555
No 28
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.23 E-value=0.0021 Score=46.02 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=55.1
Q ss_pred HHhhccccccC--CCChHHHHHHHHHHHHhcc-c--CCCCceEEEEEEeCCCccC-HHHHHHHHHHccCCCeEEEEEeec
Q 033955 5 ASALNNVALAG--PTLFGQVINTAARIAGQSL-S--YDRSKYFVLLIITDGVLTD-LQETKDALVRASDLPLSILIVGVG 78 (107)
Q Consensus 5 ~~~l~~v~l~g--PT~fapVI~~~~~~a~~~~-~--~~~~~Y~vLlIlTDG~i~D-~~~t~~~Iv~As~lPiSiIiVGvG 78 (107)
.+++.++++.| +|+-...|+++.+...... + .....+.+++++|||.-.| ..+..+.+.+ ..+-+..||+|
T Consensus 66 ~~~i~~i~~~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~~~~~a~~lr~---~gv~i~~vG~~ 142 (165)
T cd01481 66 LGAVRRLRLRGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDDVERPAVALKR---AGIVPFAIGAR 142 (165)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcchHHHHHHHHHH---CCcEEEEEeCC
Confidence 45667777764 4789999998887665432 1 1134578999999998765 4444455544 46777778888
Q ss_pred CCCccccccccccc
Q 033955 79 GADFTQMEVRNVFQ 92 (107)
Q Consensus 79 ~~~f~~m~~LD~d~ 92 (107)
..+.+.|+.+-++.
T Consensus 143 ~~~~~eL~~ias~p 156 (165)
T cd01481 143 NADLAELQQIAFDP 156 (165)
T ss_pred cCCHHHHHHHhCCC
Confidence 65555555555443
No 29
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.22 E-value=0.0012 Score=46.56 Aligned_cols=64 Identities=25% Similarity=0.282 Sum_probs=41.9
Q ss_pred cccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHH-HHHHHHHHccCCCeEEEEEeecC
Q 033955 12 ALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQ-ETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 12 ~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~-~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
.+.|+|+...-+..+.+...+. .....+++++|||..++-. ...+....+.+..+.|..||+|.
T Consensus 78 ~~~g~T~l~~al~~a~~~l~~~----~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~ 142 (180)
T cd01467 78 LAGQGTAIGDAIGLAIKRLKNS----EAKERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGK 142 (180)
T ss_pred ccCCCCcHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecC
Confidence 3678999988888887776543 1234789999999765321 11222333445577788888887
No 30
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=97.20 E-value=0.0021 Score=46.49 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=51.4
Q ss_pred cCCCChHHHHHHHHHHHHhccc----CCCCceEEEEEEeCCCcc---CHHHHHHHHHHc----------cCCCeEEEEEe
Q 033955 14 AGPTLFGQVINTAARIAGQSLS----YDRSKYFVLLIITDGVLT---DLQETKDALVRA----------SDLPLSILIVG 76 (107)
Q Consensus 14 ~gPT~fapVI~~~~~~a~~~~~----~~~~~Y~vLlIlTDG~i~---D~~~t~~~Iv~A----------s~lPiSiIiVG 76 (107)
.|.|++..-|+++.+....... .......++++||||..+ +..+..+.+.++ ...++.|..||
T Consensus 82 ~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~iG 161 (198)
T cd01470 82 KTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLDVYVFG 161 (198)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcceeEEEEe
Confidence 3679999999888765422110 011235789999999876 334444444443 33468999999
Q ss_pred ecC-CCccccccccccc
Q 033955 77 VGG-ADFTQMEVRNVFQ 92 (107)
Q Consensus 77 vG~-~~f~~m~~LD~d~ 92 (107)
+|+ .+.+.|+++=...
T Consensus 162 vG~~~~~~~L~~iA~~~ 178 (198)
T cd01470 162 VGDDVNKEELNDLASKK 178 (198)
T ss_pred cCcccCHHHHHHHhcCC
Confidence 996 5788888886553
No 31
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.17 E-value=0.00094 Score=46.17 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=52.6
Q ss_pred cccccCCCChHHHHHHHHHHHHhc-ccCCCCceEEEEEEeCCCccCHHHHHHHHHHccC-CCeEEEEEeecCCCcccccc
Q 033955 10 NVALAGPTLFGQVINTAARIAGQS-LSYDRSKYFVLLIITDGVLTDLQETKDALVRASD-LPLSILIVGVGGADFTQMEV 87 (107)
Q Consensus 10 ~v~l~gPT~fapVI~~~~~~a~~~-~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~-lPiSiIiVGvG~~~f~~m~~ 87 (107)
.-...|.|+++..|+++.+..... .+..+....+++++|||..++............. .-+.++.||++..+-..++.
T Consensus 72 ~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~i~~~~ig~~~~~~~~l~~ 151 (178)
T PF00092_consen 72 IPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKSNGIKVIAIGIDNADNEELRE 151 (178)
T ss_dssp GGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHHCTEEEEEEEESCCHHHHHHH
T ss_pred ccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHhcCcEEEEEecCcCCHHHHHH
Confidence 345679999999999998886543 2234578999999999999887433333322222 56777777774455555555
Q ss_pred cc
Q 033955 88 RN 89 (107)
Q Consensus 88 LD 89 (107)
|=
T Consensus 152 la 153 (178)
T PF00092_consen 152 LA 153 (178)
T ss_dssp HS
T ss_pred Hh
Confidence 55
No 32
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.14 E-value=0.002 Score=47.84 Aligned_cols=84 Identities=24% Similarity=0.210 Sum_probs=53.4
Q ss_pred HHhhcccccc-CCCChHHHHHHHHHHHHhcc-cCCC---CceEEEEEEeCCCccC-HHHHHHHHHHccCCCeEEEEEeec
Q 033955 5 ASALNNVALA-GPTLFGQVINTAARIAGQSL-SYDR---SKYFVLLIITDGVLTD-LQETKDALVRASDLPLSILIVGVG 78 (107)
Q Consensus 5 ~~~l~~v~l~-gPT~fapVI~~~~~~a~~~~-~~~~---~~Y~vLlIlTDG~i~D-~~~t~~~Iv~As~lPiSiIiVGvG 78 (107)
.+++.+++.. |.|+...-|+++.+.+.... +... ....+++++|||...| ..+..+. +-...+.|..||+|
T Consensus 68 ~~~i~~i~~~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~~~~~a~~---lk~~gv~i~~VgvG 144 (224)
T cd01475 68 KRAVRRMEYLETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAK---ARALGIEMFAVGVG 144 (224)
T ss_pred HHHHHhCcCCCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcccHHHHHHH---HHHCCcEEEEEeCC
Confidence 4566667654 56777777777776554321 1111 1257899999997754 4443333 34557889999999
Q ss_pred CCCcccccccccc
Q 033955 79 GADFTQMEVRNVF 91 (107)
Q Consensus 79 ~~~f~~m~~LD~d 91 (107)
+.+...|+++=+.
T Consensus 145 ~~~~~~L~~ias~ 157 (224)
T cd01475 145 RADEEELREIASE 157 (224)
T ss_pred cCCHHHHHHHhCC
Confidence 8776666666543
No 33
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.02 E-value=0.003 Score=54.03 Aligned_cols=76 Identities=11% Similarity=0.195 Sum_probs=53.7
Q ss_pred cccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC-CCccccc
Q 033955 10 NVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG-ADFTQME 86 (107)
Q Consensus 10 ~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~-~~f~~m~ 86 (107)
.+...|.|++...|..+.+...+.. ......-++++||||.-++..++.+++....+..+-|..||||. .+-..++
T Consensus 120 ~~~pgGgTnig~AL~~Aae~L~sr~-~R~nvpKVVILLTDG~sns~~dvleaAq~LR~~GVeI~vIGVG~g~n~e~Lr 196 (576)
T PTZ00441 120 TYLPYGKTNMTDALLEVRKHLNDRV-NRENAIQLVILMTDGIPNSKYRALEESRKLKDRNVKLAVIGIGQGINHQFNR 196 (576)
T ss_pred hccCCCCccHHHHHHHHHHHHhhcc-cccCCceEEEEEecCCCCCcccHHHHHHHHHHCCCEEEEEEeCCCcCHHHHH
Confidence 4457899999999999887765321 11234579999999997665666666666666789999999997 3333344
No 34
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=96.90 E-value=0.0072 Score=41.16 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=50.0
Q ss_pred HHHhhcccc----ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC
Q 033955 4 YASALNNVA----LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 4 Y~~~l~~v~----l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
.++.+.++. ..|.|++...++++.+..... +..--.++++|||..+... .+.+..+.+.++.+..||+|.
T Consensus 63 ~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~----~~~~~~iv~iTDG~~~~~~--~~~~~~~~~~~i~i~~v~~~~ 136 (172)
T PF13519_consen 63 LKNALNKLSPQGMPGGGTNLYDALQEAAKMLASS----DNRRRAIVLITDGEDNSSD--IEAAKALKQQGITIYTVGIGS 136 (172)
T ss_dssp HHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-----SSEEEEEEEEES-TTHCHH--HHHHHHHHCTTEEEEEEEES-
T ss_pred HHHHhhcccccccCccCCcHHHHHHHHHHHHHhC----CCCceEEEEecCCCCCcch--hHHHHHHHHcCCeEEEEEECC
Confidence 344455444 478899999999998887643 1345677889999776322 246666778899999999997
Q ss_pred CCc--ccccccc
Q 033955 80 ADF--TQMEVRN 89 (107)
Q Consensus 80 ~~f--~~m~~LD 89 (107)
..- ..|++|-
T Consensus 137 ~~~~~~~l~~la 148 (172)
T PF13519_consen 137 DSDANEFLQRLA 148 (172)
T ss_dssp TT-EHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 554 3455543
No 35
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=96.82 E-value=0.01 Score=43.20 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=48.6
Q ss_pred HHHhhccc-cccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC
Q 033955 4 YASALNNV-ALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 4 Y~~~l~~v-~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
+.+.++.+ .+.|.|++...|+.+.+.-++.. ...+-.+++++|||.-.|..+..++...+.+..+-+-+||+|.
T Consensus 72 ~~~~L~~~~~~~G~t~l~~aL~~A~~~l~~~~--~~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~ 146 (183)
T cd01453 72 HIQALKTARECSGEPSLQNGLEMALESLKHMP--SHGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSA 146 (183)
T ss_pred HHHHhhcccCCCCchhHHHHHHHHHHHHhcCC--ccCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEech
Confidence 45555554 45677999999988877665321 1123458888999977655444444555555677788899985
No 36
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=96.76 E-value=0.0085 Score=44.21 Aligned_cols=71 Identities=8% Similarity=0.149 Sum_probs=46.1
Q ss_pred cccccCCCChHHHHHHHHHHHHhcc-cCCCCceEEEEEEeCCCccCH-HHHHHHHHHccCCCeEEEEEeecCC
Q 033955 10 NVALAGPTLFGQVINTAARIAGQSL-SYDRSKYFVLLIITDGVLTDL-QETKDALVRASDLPLSILIVGVGGA 80 (107)
Q Consensus 10 ~v~l~gPT~fapVI~~~~~~a~~~~-~~~~~~Y~vLlIlTDG~i~D~-~~t~~~Iv~As~lPiSiIiVGvG~~ 80 (107)
.+...|.|+...-|..+.+..+... ...+....++++||||.-++. ....++-.++.+..+.|.-||+|+.
T Consensus 100 ~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 100 DVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred ccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCCC
Confidence 4445578999999988877765321 112345788999999744322 2223333344566999999999973
No 37
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=96.56 E-value=0.0062 Score=42.17 Aligned_cols=66 Identities=26% Similarity=0.287 Sum_probs=44.3
Q ss_pred hccccc--cCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeec--CCCcc
Q 033955 8 LNNVAL--AGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVG--GADFT 83 (107)
Q Consensus 8 l~~v~l--~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG--~~~f~ 83 (107)
+.++++ .|.|+|.|+++++.+. .....++++||||.....++ +-..|+=|++.|-. ..+|.
T Consensus 56 ~~~~~~~GgGGTdf~pvf~~~~~~--------~~~~~~vi~fTDg~~~~~~~-------~P~~~vlWvl~~~~~~~~P~G 120 (126)
T PF09967_consen 56 LRDIKLKGGGGTDFRPVFEYLEEN--------RPRPSVVIYFTDGEGWPPEE-------APPYPVLWVLPGNRNPKAPFG 120 (126)
T ss_pred ccccccCCCCCCcchHHHHHHHhc--------CCCCCEEEEEeCCCCCCCCC-------CCCCcEEEEEeCCCCCCCCCE
Confidence 344454 5789999999998654 23467888999998855432 22689999998822 24455
Q ss_pred ccccc
Q 033955 84 QMEVR 88 (107)
Q Consensus 84 ~m~~L 88 (107)
..-+|
T Consensus 121 ~vv~l 125 (126)
T PF09967_consen 121 RVVRL 125 (126)
T ss_pred EEEEe
Confidence 54443
No 38
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=96.52 E-value=0.029 Score=41.61 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=56.0
Q ss_pred HHHHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCC
Q 033955 3 AYASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGA 80 (107)
Q Consensus 3 aY~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~ 80 (107)
+-+..+.++.+.|.|++..-|+.+...-+... ..++.--|+++++++.-.|.++..+++.++.+..+.+-+||+|..
T Consensus 71 ~~~~~L~~i~~~g~~~l~~AL~~A~~~L~~~~-~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~ 147 (187)
T cd01452 71 KILSKLHDVQPKGKANFITGIQIAQLALKHRQ-NKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEI 147 (187)
T ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHHHhcCC-CcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 44667788889999999999887665544321 122334677777777556777777788888888999999999974
No 39
>PRK13685 hypothetical protein; Provisional
Probab=96.42 E-value=0.013 Score=46.06 Aligned_cols=78 Identities=23% Similarity=0.235 Sum_probs=52.0
Q ss_pred HHHHhhccccccCCCChHHHHHHHHHHHHhc---cc-CCCCceEEEEEEeCCCccCH------HHHHHHHHHccCCCeEE
Q 033955 3 AYASALNNVALAGPTLFGQVINTAARIAGQS---LS-YDRSKYFVLLIITDGVLTDL------QETKDALVRASDLPLSI 72 (107)
Q Consensus 3 aY~~~l~~v~l~gPT~fapVI~~~~~~a~~~---~~-~~~~~Y~vLlIlTDG~i~D~------~~t~~~Iv~As~lPiSi 72 (107)
+-++.+..+++.+-|+...-|..+.+...+. .+ ..+...-.++++|||.-+.- ....++...+.+.++.|
T Consensus 152 ~l~~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i 231 (326)
T PRK13685 152 ATKNAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPI 231 (326)
T ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeE
Confidence 4567788889999999998888888776531 11 11223456789999976421 22234555566678888
Q ss_pred EEEeecCC
Q 033955 73 LIVGVGGA 80 (107)
Q Consensus 73 IiVGvG~~ 80 (107)
-.||+|..
T Consensus 232 ~~Ig~G~~ 239 (326)
T PRK13685 232 STISFGTP 239 (326)
T ss_pred EEEEECCC
Confidence 88899863
No 40
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.19 E-value=0.032 Score=47.63 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=52.3
Q ss_pred HHHHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCcc---C---------H----HHHHHHHHHcc
Q 033955 3 AYASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLT---D---------L----QETKDALVRAS 66 (107)
Q Consensus 3 aY~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~---D---------~----~~t~~~Iv~As 66 (107)
..++.+..+...|.|.+++-|..+.+...+.... ..-..+++||||..+ + . ++....-....
T Consensus 468 ~~~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~--~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 545 (589)
T TIGR02031 468 QAKRRLDVLPGGGGTPLAAGLAAAFQTALQARSS--GGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIR 545 (589)
T ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHHHHhccc--CCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHH
Confidence 3456788899999999999999999887754211 223688999999764 1 0 11122223334
Q ss_pred CCCeEEEEEeecCC
Q 033955 67 DLPLSILIVGVGGA 80 (107)
Q Consensus 67 ~lPiSiIiVGvG~~ 80 (107)
...+++++||+|..
T Consensus 546 ~~gi~~~vid~~~~ 559 (589)
T TIGR02031 546 EAGMPALVIDTAMR 559 (589)
T ss_pred hcCCeEEEEeCCCC
Confidence 56789999999975
No 41
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.08 E-value=0.033 Score=47.76 Aligned_cols=82 Identities=17% Similarity=0.115 Sum_probs=58.7
Q ss_pred HHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccC-----------HHHHHHHHHHccCCCeEEE
Q 033955 5 ASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTD-----------LQETKDALVRASDLPLSIL 73 (107)
Q Consensus 5 ~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D-----------~~~t~~~Iv~As~lPiSiI 73 (107)
++.+..+...|.|.+++-|..+.+.+.+.... ..-.+++++|||..+. .++..++...+....+.++
T Consensus 464 ~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~--~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 541 (584)
T PRK13406 464 KRSLAGLPGGGGTPLAAGLDAAAALALQVRRK--GMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPAL 541 (584)
T ss_pred HHHHhcCCCCCCChHHHHHHHHHHHHHHhccC--CCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEE
Confidence 46677888889999999999999887765321 2346889999997652 1344445555556778889
Q ss_pred EEeecCCCccccccc
Q 033955 74 IVGVGGADFTQMEVR 88 (107)
Q Consensus 74 iVGvG~~~f~~m~~L 88 (107)
+|+.|......+++|
T Consensus 542 vId~g~~~~~~~~~L 556 (584)
T PRK13406 542 VIDTSPRPQPQARAL 556 (584)
T ss_pred EEecCCCCcHHHHHH
Confidence 999997765566555
No 42
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=95.75 E-value=0.065 Score=41.86 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCCChHHHHHHHHHHHHhcccC--CCCceEEEEEEeCCCccCHHHHH-HHHHHccCCCeEEEEEeecCC
Q 033955 15 GPTLFGQVINTAARIAGQSLSY--DRSKYFVLLIITDGVLTDLQETK-DALVRASDLPLSILIVGVGGA 80 (107)
Q Consensus 15 gPT~fapVI~~~~~~a~~~~~~--~~~~Y~vLlIlTDG~i~D~~~t~-~~Iv~As~lPiSiIiVGvG~~ 80 (107)
+.|+++..|..+.+...+...+ +++.--+++|+|||...+.+... .++.+|....+.+++||+-+.
T Consensus 137 ~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 137 DKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred CCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 6799999999998887543111 11123799999999965554444 447888888999999999875
No 43
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=95.39 E-value=0.093 Score=45.10 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=50.7
Q ss_pred HHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccC-------HHHHHHHHHHccCCCeEEEEEee
Q 033955 5 ASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTD-------LQETKDALVRASDLPLSILIVGV 77 (107)
Q Consensus 5 ~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D-------~~~t~~~Iv~As~lPiSiIiVGv 77 (107)
++.+..+...|.|+++.-|..+.+...+...+....-.++++||||..+. .++..++-.......+.+++|+.
T Consensus 529 ~~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt 608 (633)
T TIGR02442 529 ARRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDT 608 (633)
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeC
Confidence 45677888899999999999999887743222223457889999997643 12333222333345677888888
Q ss_pred cCC
Q 033955 78 GGA 80 (107)
Q Consensus 78 G~~ 80 (107)
++.
T Consensus 609 ~~~ 611 (633)
T TIGR02442 609 ESG 611 (633)
T ss_pred CCC
Confidence 764
No 44
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=94.19 E-value=0.36 Score=36.94 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=38.3
Q ss_pred cCCCChHHHHHHHHH-HHHhcccCCCCceEEEEEEeCCCccCHHH-HHHHHHHccCCCeEEEEEeecC
Q 033955 14 AGPTLFGQVINTAAR-IAGQSLSYDRSKYFVLLIITDGVLTDLQE-TKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 14 ~gPT~fapVI~~~~~-~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~-t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
.|.|++..-|..++. ...+... ..+.-.+++++|||.-++... ..+++..+.+..+.+-.||+|+
T Consensus 138 ~g~T~l~~al~~aa~~~~~~~~~-~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 138 GGGTALYDAITLAALEQLANALA-GIPGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARG 204 (296)
T ss_pred CCcchhHHHHHHHHHHHHHHhhc-CCCCCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCc
Confidence 788988877765543 2222211 111225799999997654433 3334444455678888888874
No 45
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=93.49 E-value=0.45 Score=42.80 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=49.4
Q ss_pred cccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCCCcccccccc
Q 033955 12 ALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGADFTQMEVRN 89 (107)
Q Consensus 12 ~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~m~~LD 89 (107)
...|.|++.+-|+.+.+...+.... ..-..+++||||+.++..+..+.+ ...++.|--||+|...=..|++|=
T Consensus 378 ~A~GGT~I~~GL~~Alq~L~~~~~~--~~~~~IILLTDGedn~~~~~l~~l---k~~gVtI~TIg~G~dad~~L~~IA 450 (863)
T TIGR00868 378 AASGGTSICSGLKAAFQVIKKSYQS--TDGSEIVLLTDGEDNTISSCFEEV---KQSGAIIHTIALGPSAAKELEELS 450 (863)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcccc--cCCCEEEEEeCCCCCCHHHHHHHH---HHcCCEEEEEEeCCChHHHHHHHH
Confidence 4689999999999998877654211 122467888999887665544444 345777778899975544455543
No 46
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=93.32 E-value=0.8 Score=35.95 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=57.6
Q ss_pred HHHHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccC------HHHHHHHHHHccCCCeEEEEEe
Q 033955 3 AYASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTD------LQETKDALVRASDLPLSILIVG 76 (107)
Q Consensus 3 aY~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D------~~~t~~~Iv~As~lPiSiIiVG 76 (107)
.-.+.++....-|-|-+++-|..+.+...++..+....-.++++||||..++ ..++.++-......++=+++|.
T Consensus 140 ~~~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid 219 (261)
T COG1240 140 LAERALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVID 219 (261)
T ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEe
Confidence 3456778888899999999999999998877544555678889999997643 3455555555556677667777
Q ss_pred ecCCC
Q 033955 77 VGGAD 81 (107)
Q Consensus 77 vG~~~ 81 (107)
.....
T Consensus 220 ~e~~~ 224 (261)
T COG1240 220 TEGSE 224 (261)
T ss_pred cCCcc
Confidence 66544
No 47
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=93.07 E-value=0.25 Score=36.94 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=36.6
Q ss_pred ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCC-CccCHHHHHHHHHHcc
Q 033955 13 LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDG-VLTDLQETKDALVRAS 66 (107)
Q Consensus 13 l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG-~i~D~~~t~~~Iv~As 66 (107)
+.|.|+++..+++..+...+.. -.-+.++|+||| +..+.++..+.+.+-.
T Consensus 126 ~~GgTdi~~aL~~~~~~~~~~~----~~~t~vvIiSDg~~~~~~~~~~~~l~~l~ 176 (222)
T PF05762_consen 126 FGGGTDIGQALREFLRQYARPD----LRRTTVVIISDGWDTNDPEPLAEELRRLR 176 (222)
T ss_pred CCCccHHHHHHHHHHHHhhccc----ccCcEEEEEecccccCChHHHHHHHHHHH
Confidence 8999999999999988775321 146899999999 6666655555554443
No 48
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=91.11 E-value=1.7 Score=31.95 Aligned_cols=66 Identities=5% Similarity=0.051 Sum_probs=44.1
Q ss_pred cCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCcc------CHHHHHHHHHHccCCCeEEEEEeecCCC
Q 033955 14 AGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLT------DLQETKDALVRASDLPLSILIVGVGGAD 81 (107)
Q Consensus 14 ~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~------D~~~t~~~Iv~As~lPiSiIiVGvG~~~ 81 (107)
.+.|.+...|..+.+.-.+.. ....--.+++||||+-. +.++..+.+.+..+..+.+..+|+|..+
T Consensus 103 ~~~~~l~~aL~~a~~~~~~~~--~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 103 SGQVSLSDALWVCLDLFSKGK--KKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred CCCccHHHHHHHHHHHHHhcc--ccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 457889999988887765421 11223478899999543 1244455566666778999999999643
No 49
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=91.10 E-value=1.1 Score=34.43 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=48.4
Q ss_pred HHHHhhccccccCCCChHHHHHHHHHHHHh--------------------------------cccCCCCceEEEEEEeCC
Q 033955 3 AYASALNNVALAGPTLFGQVINTAARIAGQ--------------------------------SLSYDRSKYFVLLIITDG 50 (107)
Q Consensus 3 aY~~~l~~v~l~gPT~fapVI~~~~~~a~~--------------------------------~~~~~~~~Y~vLlIlTDG 50 (107)
+|++-++.=+|..|.-+.+++.-+-+.|.. ...+.+..-.+|++++||
T Consensus 66 ~~~~w~~~G~p~~pgrln~l~h~vyk~a~~~wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e~rkiLiViSDG 145 (219)
T PF11775_consen 66 SREAWLAAGRPRYPGRLNDLRHIVYKDADTPWRRARRNLGLMMREGLLKENIDGEALRWAAERLLARPEQRKILIVISDG 145 (219)
T ss_pred hHHHHHhcCCCCCChHHHHHHHHHHHhcCChhhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCccceEEEEEeCC
Confidence 455555566677787777777666554321 000234556799999999
Q ss_pred CccC-----------HHHHHHHHHHcc--CCCeEEEEEeecC
Q 033955 51 VLTD-----------LQETKDALVRAS--DLPLSILIVGVGG 79 (107)
Q Consensus 51 ~i~D-----------~~~t~~~Iv~As--~lPiSiIiVGvG~ 79 (107)
.+.| ++...++.++.- .-|+.++-||||.
T Consensus 146 ~P~d~st~~~n~~~~L~~HLr~vi~~ie~~~~Vel~aiGIg~ 187 (219)
T PF11775_consen 146 APADDSTLSANDGDYLDAHLRQVIAEIETRSDVELIAIGIGH 187 (219)
T ss_pred CcCcccccccCChHHHHHHHHHHHHHHhccCCcEEEEEEcCC
Confidence 9975 334444444442 3588899999986
No 50
>PRK10997 yieM hypothetical protein; Provisional
Probab=88.95 E-value=2.1 Score=36.33 Aligned_cols=74 Identities=9% Similarity=-0.007 Sum_probs=44.1
Q ss_pred cccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccC-HHHHHHHHHHccC-CCeEEEEEeecC-CCccccccc
Q 033955 12 ALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTD-LQETKDALVRASD-LPLSILIVGVGG-ADFTQMEVR 88 (107)
Q Consensus 12 ~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D-~~~t~~~Iv~As~-lPiSiIiVGvG~-~~f~~m~~L 88 (107)
.+.|.|++++.++++++...+.. ..=..+++|||+.... .++..+.+....+ .-..+.-|-||+ ++-.-|+.+
T Consensus 392 ~f~GGTDl~~aL~~al~~l~~~~----~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~if 467 (487)
T PRK10997 392 SFRGGTDLAPCLRAIIEKMQGRE----WFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGKPGIMRIF 467 (487)
T ss_pred hcCCCCcHHHHHHHHHHHHcccc----cCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHHhc
Confidence 36899999999999998876431 2235799999996543 3445555544322 333333344444 332334544
Q ss_pred c
Q 033955 89 N 89 (107)
Q Consensus 89 D 89 (107)
|
T Consensus 468 D 468 (487)
T PRK10997 468 D 468 (487)
T ss_pred C
Confidence 4
No 51
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=87.99 E-value=1.3 Score=38.30 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=53.2
Q ss_pred ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCH---------HHHHHHHHHccCCCeEEEEEeecCCCcc
Q 033955 13 LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDL---------QETKDALVRASDLPLSILIVGVGGADFT 83 (107)
Q Consensus 13 l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~---------~~t~~~Iv~As~lPiSiIiVGvG~~~f~ 83 (107)
|---|--...|+|+.+.-.+ .++.=-.|+++|||.++|. +.|.+|..+|-+..++++-|=+..+.-+
T Consensus 529 Pg~ytR~G~AIR~As~kL~~----rpq~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtld~ea~~ 604 (637)
T COG4548 529 PGYYTRDGAAIRHASAKLME----RPQRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTLDREAIS 604 (637)
T ss_pred ccccccccHHHHHHHHHHhc----CcccceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEecchhhh
Confidence 33346667778777654332 2345578899999999874 4699999999999999999988876655
Q ss_pred cccccc
Q 033955 84 QMEVRN 89 (107)
Q Consensus 84 ~m~~LD 89 (107)
.+..+-
T Consensus 605 y~p~~f 610 (637)
T COG4548 605 YLPALF 610 (637)
T ss_pred hhHHHh
Confidence 554444
No 52
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=87.88 E-value=1.3 Score=33.22 Aligned_cols=48 Identities=13% Similarity=0.208 Sum_probs=26.4
Q ss_pred ceEEEEEEeCCCccCHH-HHHH-HHHHccCCCeEEEEEeecCCCcccccc
Q 033955 40 KYFVLLIITDGVLTDLQ-ETKD-ALVRASDLPLSILIVGVGGADFTQMEV 87 (107)
Q Consensus 40 ~Y~vLlIlTDG~i~D~~-~t~~-~Iv~As~lPiSiIiVGvG~~~f~~m~~ 87 (107)
.-.++++||||..+.-. ...+ +-.-|.+..+=|--||||..+...++.
T Consensus 111 ~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~d~~~l~~ 160 (191)
T cd01455 111 DEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSLSDEADQL 160 (191)
T ss_pred CCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCCCHHHHHH
Confidence 34699999999864322 2333 223344445555557777644444443
No 53
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=87.80 E-value=1.6 Score=36.59 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=41.1
Q ss_pred cccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCcc---CHHHHHHHHHHccCCCeEEEEEe
Q 033955 12 ALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLT---DLQETKDALVRASDLPLSILIVG 76 (107)
Q Consensus 12 ~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~---D~~~t~~~Iv~As~lPiSiIiVG 76 (107)
.+.|.|+|.+.|..+++..++.. . .+ .=+++||||.-. |.-..++.+.++++.-+--++||
T Consensus 342 ~f~GGTD~~~~l~~al~~~k~~~-~--~~-adiv~ITDg~~~~~~~~~~~v~e~~k~~~~rl~aV~I~ 405 (437)
T COG2425 342 VFGGGTDITKALRSALEDLKSRE-L--FK-ADIVVITDGEDERLDDFLRKVKELKKRRNARLHAVLIG 405 (437)
T ss_pred hcCCCCChHHHHHHHHHHhhccc-c--cC-CCEEEEeccHhhhhhHHHHHHHHHHHHhhceEEEEEec
Confidence 45566999999999999998642 1 12 457899999542 34556666666666665554443
No 54
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=87.38 E-value=2.2 Score=32.33 Aligned_cols=80 Identities=23% Similarity=0.192 Sum_probs=49.1
Q ss_pred cccccCCCChHHHHHHHHHHHHhccc---CCCCce--EEEEEEeCCCccCHHHHHHHHHHccC-CCeEEEEEeecC--CC
Q 033955 10 NVALAGPTLFGQVINTAARIAGQSLS---YDRSKY--FVLLIITDGVLTDLQETKDALVRASD-LPLSILIVGVGG--AD 81 (107)
Q Consensus 10 ~v~l~gPT~fapVI~~~~~~a~~~~~---~~~~~Y--~vLlIlTDG~i~D~~~t~~~Iv~As~-lPiSiIiVGvG~--~~ 81 (107)
.+.-.|.|....-|+.+.++..+..+ .++..| -+.+++|||.++|.=+.-.++..--. ---|++.+++|. ++
T Consensus 72 ~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~~~~~~k~v~a~~~G~~~ad 151 (207)
T COG4245 72 ILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQGERRAKSVAAFSVGVQGAD 151 (207)
T ss_pred ceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhhcccccceEEEEEecccccc
Confidence 34446899999999999998875421 222222 35678999999875444444444322 335666666664 56
Q ss_pred cccccccc
Q 033955 82 FTQMEVRN 89 (107)
Q Consensus 82 f~~m~~LD 89 (107)
-.-++++-
T Consensus 152 ~~~L~qit 159 (207)
T COG4245 152 NKTLNQIT 159 (207)
T ss_pred cHHHHHHH
Confidence 55554444
No 55
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=82.36 E-value=3.5 Score=35.90 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=31.2
Q ss_pred CCCCceEEEEEEeCCCccC-----------HHH-HHHHHHHccCC-CeEEEEEeecC
Q 033955 36 YDRSKYFVLLIITDGVLTD-----------LQE-TKDALVRASDL-PLSILIVGVGG 79 (107)
Q Consensus 36 ~~~~~Y~vLlIlTDG~i~D-----------~~~-t~~~Iv~As~l-PiSiIiVGvG~ 79 (107)
+....=-||++|+||.+.| +++ .++.|....+. |+-++=||||.
T Consensus 511 ~R~e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi~~~e~~~~vel~aigIg~ 567 (600)
T TIGR01651 511 ARPEQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGH 567 (600)
T ss_pred cCcccceEEEEEeCCCcCCccccccCchhHHHHHHHHHHHHHhccCCceEEEeeccc
Confidence 3456678999999999976 222 34445555554 89999999986
No 56
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.12 E-value=9.3 Score=31.34 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=31.8
Q ss_pred cCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeec
Q 033955 14 AGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVG 78 (107)
Q Consensus 14 ~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG 78 (107)
-|.|.|+||++..-+.- .-.+|+.+|||--+-.. .+-.-|+-|+.-|-|
T Consensus 325 gG~Tdf~Pvfeylek~~---------~~~~lIyfTDG~gd~p~-------~~r~~~~lwVl~~~~ 373 (396)
T COG3864 325 GGGTDFSPVFEYLEKNR---------MECFLIYFTDGMGDQPL-------VFRPKVLLWVLTGAK 373 (396)
T ss_pred CCCccccHHHHHHHhhc---------ccceEEEEccCCCCccc-------ccCCcceEEEecCCc
Confidence 46799999998753221 11678899999654332 233456888877755
No 57
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=55.63 E-value=29 Score=28.85 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=39.1
Q ss_pred HHHHhcccCCCCceEEEEEEeCCCcc-------CHHHHHHHHHHccCCCeEEEEEeecCC--Cccccc
Q 033955 28 RIAGQSLSYDRSKYFVLLIITDGVLT-------DLQETKDALVRASDLPLSILIVGVGGA--DFTQME 86 (107)
Q Consensus 28 ~~a~~~~~~~~~~Y~vLlIlTDG~i~-------D~~~t~~~Iv~As~lPiSiIiVGvG~~--~f~~m~ 86 (107)
++++... ..-.--.|.|-++.|+.. ...++.+.+.+|+++|+ ++.|.|+. |++.|+
T Consensus 143 ~wak~~V-~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPL--IL~gsg~~~kD~eVLe 207 (389)
T TIGR00381 143 EWARKCV-KEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPI--VIGGSGNPEKDPLVLE 207 (389)
T ss_pred HHHHHHH-HHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCE--EEeCCCCCcCCHHHHH
Confidence 6666543 122345788888888877 56788899999999999 66888763 555553
No 58
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=54.28 E-value=11 Score=29.47 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=35.5
Q ss_pred CceEEEEEEeCC-CccCHHHHHHHHHHccCCCeEEEEEeecCCCcccc
Q 033955 39 SKYFVLLIITDG-VLTDLQETKDALVRASDLPLSILIVGVGGADFTQM 85 (107)
Q Consensus 39 ~~Y~vLlIlTDG-~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~m 85 (107)
..|=-++.+||| ...|..+..+.|.+.+..|+|+- +|.|..+++..
T Consensus 49 ~R~D~~iavtnGi~~~~~~~i~~~i~~~~Pv~vs~~-ig~g~tP~eA~ 95 (246)
T PF05165_consen 49 TRYDNMIAVTNGIDLEDHARIQESIRNRYPVTVSMC-IGYGETPYEAQ 95 (246)
T ss_dssp TTSSEEEEE-TT--HHHHHHHHHHHHHHSSS-EEEE-EEEESSHHHHH
T ss_pred eeeeeEEEeecCCCHHHHHHHHHHHHhcCCceEEEE-EecCCCHHHHH
Confidence 457778999999 66889999999999999999974 58888776554
No 59
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=49.05 E-value=36 Score=28.48 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=36.7
Q ss_pred ccCCCChHHHHHHHHHHHHhcccCCCCceEEEE-EEeCCCc--cCHHHHHHHHH
Q 033955 13 LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLL-IITDGVL--TDLQETKDALV 63 (107)
Q Consensus 13 l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLl-IlTDG~i--~D~~~t~~~Iv 63 (107)
=+|.|..|+.++.+.++..+. .....|.|=+ -+|||+. +|...+.+.+.
T Consensus 309 esGGT~vSSA~~l~~~ii~er--ypp~~wNiY~~~~SDGDN~~~D~~~~~~ll~ 360 (421)
T PF04285_consen 309 ESGGTRVSSAYELALEIIEER--YPPSDWNIYVFHASDGDNWSSDNERCVELLE 360 (421)
T ss_pred CCCCeEehHHHHHHHHHHHhh--CChhhceeeeEEcccCccccCCCHHHHHHHH
Confidence 479999999999999998864 2344565544 4999987 67777776665
No 60
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=48.26 E-value=21 Score=22.95 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=27.0
Q ss_pred HHHHHccCCCe--------EEEEEeecCCCccccccccccccceeeccceeee
Q 033955 60 DALVRASDLPL--------SILIVGVGGADFTQMEVRNVFQLEYLLTSIELLF 104 (107)
Q Consensus 60 ~~Iv~As~lPi--------SiIiVGvG~~~f~~m~~LD~d~~~~~~~~~~~~~ 104 (107)
+...+|.+.|+ |.+|.||.. ++..++|. |+.++|.+ ...||
T Consensus 18 ~lw~~A~~~PL~~~L~~~~~Y~F~~in~--~ae~EEl~-DEsrrL~d-v~pf~ 66 (78)
T PF02192_consen 18 ELWEEAKKYPLFSLLKDPSSYIFSCINQ--FAEQEELY-DESRRLCD-VRPFF 66 (78)
T ss_dssp HHHHHGGGSTTCCCS--GGGEEEEEEBT--TSCEEEE---TTSBTGG-C-BSS
T ss_pred HHHHHHHhCChHHHhCCCCcEEEEEecC--CCccceeE-cchheeee-ccCcc
Confidence 45667788776 689999987 58888999 67666643 33344
No 61
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=47.63 E-value=40 Score=23.36 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=35.3
Q ss_pred CCceEEEEEEeCCCcc----CHHHHHHHHHHccCCCeEEEEEeecCCCcccccccc
Q 033955 38 RSKYFVLLIITDGVLT----DLQETKDALVRASDLPLSILIVGVGGADFTQMEVRN 89 (107)
Q Consensus 38 ~~~Y~vLlIlTDG~i~----D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~m~~LD 89 (107)
-..++||+.-|.|.-. =.+++.+-|....+...-.=+||-|+.+|...--+=
T Consensus 37 ~~ep~vLitpTy~~G~~~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNfg~~f~~a 92 (122)
T PF07972_consen 37 VDEPFVLITPTYGFGENDGGVPKQVIRFLENPDNRKLLRGVIGSGNRNFGDNFCLA 92 (122)
T ss_dssp -SS-EEEEEE-BTTTBSSTSS-HHHHHHHHSHHHGGGEEEEEEEE-GGGGGGTTHH
T ss_pred CCCCEEEEecccCCCCCCCCCCHHHHHHHHHHHHHhhheeEEecCCcHHHHHHHHH
Confidence 3679999999999665 478888999966555666666999999998654433
No 62
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=46.61 E-value=53 Score=27.35 Aligned_cols=60 Identities=30% Similarity=0.302 Sum_probs=39.0
Q ss_pred HHHHhhcccccc-CCCChHHHHHHHHHH-HHhcccCCCCceEEEEEEeCC-CccCHHHHHHHHHHcc
Q 033955 3 AYASALNNVALA-GPTLFGQVINTAARI-AGQSLSYDRSKYFVLLIITDG-VLTDLQETKDALVRAS 66 (107)
Q Consensus 3 aY~~~l~~v~l~-gPT~fapVI~~~~~~-a~~~~~~~~~~Y~vLlIlTDG-~i~D~~~t~~~Iv~As 66 (107)
|.+.+...|.-| |.|-+++.+..-.+. ....+ ..-.++||+||| +-+|..+...++..-+
T Consensus 276 Al~~~~a~v~dw~ggTrig~tl~aF~~~~~~~~L----~~gA~VlilsDg~drd~~~~l~~~~~rl~ 338 (395)
T COG3552 276 ALRRLSAQVKDWDGGTRIGNTLAAFLRRWHGNVL----SGGAVVLILSDGLDRDDIPELVTAMARLR 338 (395)
T ss_pred HHHHHHhhcccccCCcchhHHHHHHHcccccccc----CCceEEEEEecccccCCchHHHHHHHHHH
Confidence 455566666554 778877776654433 22222 335789999999 7788887777766554
No 63
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=46.45 E-value=30 Score=28.54 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=40.9
Q ss_pred ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEE-EeCCCc--cCHHHHHHHHHHccCCCe
Q 033955 13 LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLI-ITDGVL--TDLQETKDALVRASDLPL 70 (107)
Q Consensus 13 l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlI-lTDG~i--~D~~~t~~~Iv~As~lPi 70 (107)
=+|.|..+..++.+.++..+. ...+.|.|=.+ .+||+. +|.+.+.+.+.+ -+|+
T Consensus 265 EsGGT~vSSA~~l~~eII~~r--Ypp~~wNIY~f~aSDGDNw~~D~~~c~~ll~~--llp~ 321 (371)
T TIGR02877 265 ESGGTYCSSGYKKALEIIDER--YNPARYNIYAFHFSDGDNLTSDNERAVKLVRK--LLEV 321 (371)
T ss_pred CCCCeEehHHHHHHHHHHHhh--CChhhCeeEEEEcccCCCccCCcHHHHHHHHH--HHHh
Confidence 479999999999999998864 34556777666 999987 677777777775 4553
No 64
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.15 E-value=1e+02 Score=29.02 Aligned_cols=85 Identities=13% Similarity=0.207 Sum_probs=60.1
Q ss_pred hHHHHhhccccccCCCChHHHHHHHHHHHHhcc-----cCCCCceEEEEEEeCCCccCHHHHHHHHHHc-cCCCeEEEEE
Q 033955 2 AAYASALNNVALAGPTLFGQVINTAARIAGQSL-----SYDRSKYFVLLIITDGVLTDLQETKDALVRA-SDLPLSILIV 75 (107)
Q Consensus 2 eaY~~~l~~v~l~gPT~fapVI~~~~~~a~~~~-----~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~A-s~lPiSiIiV 75 (107)
+..++.+.++++.|-+++.-..+.+-..=.... .+++.=+.+.+++|||...+.++..+.--.- -..-++=..|
T Consensus 292 ~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~~~~If~~yn~~~~~Vrvftfli 371 (1104)
T KOG2353|consen 292 KVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDENAKEIFEKYNWPDKKVRVFTFLI 371 (1104)
T ss_pred HHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcccHHHHHHhhccCCCceEEEEEEe
Confidence 467888899999999999999888776554321 1233458889999999999988888776663 2345555566
Q ss_pred eecCCCccccc
Q 033955 76 GVGGADFTQME 86 (107)
Q Consensus 76 GvG~~~f~~m~ 86 (107)
|-+..+|..++
T Consensus 372 g~~~~~~~~~~ 382 (1104)
T KOG2353|consen 372 GDEVYDLDEIQ 382 (1104)
T ss_pred cccccccccch
Confidence 66666665543
No 65
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=41.90 E-value=53 Score=25.13 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHH-ccCCC---eEEEEEeec
Q 033955 20 GQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVR-ASDLP---LSILIVGVG 78 (107)
Q Consensus 20 apVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~-As~lP---iSiIiVGvG 78 (107)
.|++..+++.+++. +..-|++=+++||.+.-..+...+|.+ |.+.. +.+=.+.=|
T Consensus 13 n~~l~~~~~~~k~~----~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DG 71 (223)
T PF06415_consen 13 NPVLLEAIEHAKKN----GGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDG 71 (223)
T ss_dssp SHHHHHHHHHHCCT----T--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-S
T ss_pred CHHHHHHHHHHHhc----CCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 37888888887753 456899999999988765554544444 44433 445555555
No 66
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=41.64 E-value=1.3e+02 Score=22.51 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhccc--CCCCceEEEEEE---eCCCccCHHHHHHHHHHccCCCeEEEEEeecC
Q 033955 21 QVINTAARIAGQSLS--YDRSKYFVLLII---TDGVLTDLQETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 21 pVI~~~~~~a~~~~~--~~~~~Y~vLlIl---TDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
|-++.+.+.|..... ..-..=.||+|+ |.-+..|..+|++.+++. -|-+=+||++.
T Consensus 80 ~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~~---~IrvsvI~laa 140 (193)
T PF04056_consen 80 PSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDIHETIESLKKE---NIRVSVISLAA 140 (193)
T ss_pred hhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhHHHHHHHHHHc---CCEEEEEEEhH
Confidence 445555555554431 111223788886 666778888999988876 45555578775
No 67
>PRK08105 flavodoxin; Provisional
Probab=38.85 E-value=1.1e+02 Score=21.37 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=26.3
Q ss_pred eEEEEEEe--CCCc-cCHHHHHHHHHHc--cCCCeEEEEEeecCCCc
Q 033955 41 YFVLLIIT--DGVL-TDLQETKDALVRA--SDLPLSILIVGVGGADF 82 (107)
Q Consensus 41 Y~vLlIlT--DG~i-~D~~~t~~~Iv~A--s~lPiSiIiVGvG~~~f 82 (107)
+.+++.=| ||++ ++..+..+.+.+. .--.+.+.+.|+|+..+
T Consensus 51 ~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~l~~~~~avfGlGds~Y 97 (149)
T PRK08105 51 LVLVVTSTTGQGDLPDSIVPLFQALKDTAGYQPNLRYGVIALGDSSY 97 (149)
T ss_pred eEEEEECCCCCCCCChhHHHHHHHHHhcCcccCCCEEEEEeeecCCH
Confidence 33333344 6666 4566777777764 12336788999999764
No 68
>PRK09004 FMN-binding protein MioC; Provisional
Probab=37.63 E-value=1.1e+02 Score=21.30 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=26.0
Q ss_pred eEEEEEEe----CCCcc-CHHHHHHHHHHcc--CCCeEEEEEeecCCCc
Q 033955 41 YFVLLIIT----DGVLT-DLQETKDALVRAS--DLPLSILIVGVGGADF 82 (107)
Q Consensus 41 Y~vLlIlT----DG~i~-D~~~t~~~Iv~As--~lPiSiIiVGvG~~~f 82 (107)
+-.++|+| ||++. +.+...+.|.+.+ -..+.+-+.|+|+..+
T Consensus 47 ~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~g~~~aVfGlGds~Y 95 (146)
T PRK09004 47 SGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLSQVRFAAIGIGSSEY 95 (146)
T ss_pred CCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCCCCEEEEEeecCCCH
Confidence 34444444 78664 4556666666542 2336788899999864
No 69
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=37.36 E-value=52 Score=25.69 Aligned_cols=42 Identities=33% Similarity=0.362 Sum_probs=33.4
Q ss_pred CCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC
Q 033955 37 DRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 37 ~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
.+..|+|-+|+-||+. |.-++.++...|+++-+.=+++=|..
T Consensus 138 ~~~~~~VyvilGDGEl-~EG~~WEAam~Aah~~L~NLiaivD~ 179 (243)
T COG3959 138 KGSPYRVYVILGDGEL-DEGQVWEAAMTAAHYKLDNLIAIVDR 179 (243)
T ss_pred cCCCceEEEEecCccc-ccccHHHHHHHHHHhccCcEEEEEec
Confidence 3578999999999998 45678999999999888766654543
No 70
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=35.73 E-value=41 Score=28.96 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccC--------------------HHHHHHHHHHccCCCeEEEEEe
Q 033955 17 TLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTD--------------------LQETKDALVRASDLPLSILIVG 76 (107)
Q Consensus 17 T~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D--------------------~~~t~~~Iv~As~lPiSiIiVG 76 (107)
||.++-+.-+-++-++. +..-..++|+|||+++- +-.|...+-++.+..+-+-+.=
T Consensus 533 TNlhhaL~LA~r~l~Rh----~~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~d~~~r~G~q~t~Fr 608 (652)
T COG4867 533 TNLHHALALAGRHLRRH----AGAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGFDDMARLGAQVTIFR 608 (652)
T ss_pred cchHHHHHHHHHHHHhC----cccCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHHHHHHhccceeeEEe
Confidence 77777666655555443 34566789999998842 3456666667766555554444
Q ss_pred ec
Q 033955 77 VG 78 (107)
Q Consensus 77 vG 78 (107)
+|
T Consensus 609 Lg 610 (652)
T COG4867 609 LG 610 (652)
T ss_pred ec
Confidence 44
No 71
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=35.51 E-value=93 Score=25.53 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=36.3
Q ss_pred CCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC
Q 033955 38 RSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 38 ~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
...|.+=||--||---..-+..+.+.+|++.||.|=++-++.
T Consensus 33 ~~~~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~ 74 (365)
T KOG0785|consen 33 TKTITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTP 74 (365)
T ss_pred CCceEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccc
Confidence 456999999999987777888888999999999998887765
No 72
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=35.21 E-value=23 Score=28.87 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.0
Q ss_pred cCCCeEEEEEee-cCCCccccccccc
Q 033955 66 SDLPLSILIVGV-GGADFTQMEVRNV 90 (107)
Q Consensus 66 s~lPiSiIiVGv-G~~~f~~m~~LD~ 90 (107)
-+.|.+|++||+ |++...+|++|-+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHH
Confidence 357999999999 6789999998863
No 73
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=34.76 E-value=1.7e+02 Score=21.85 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=20.7
Q ss_pred EEeCCCccCHHHHHHHHHHccCCCeEEEEEeec
Q 033955 46 IITDGVLTDLQETKDALVRASDLPLSILIVGVG 78 (107)
Q Consensus 46 IlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG 78 (107)
|-.||.|+ .+++..+.+| ...++++|-+
T Consensus 170 I~vdGGI~--~eni~~l~~a---GAd~vVvGSa 197 (220)
T PRK08883 170 LEIDGGVK--VDNIREIAEA---GADMFVAGSA 197 (220)
T ss_pred EEEECCCC--HHHHHHHHHc---CCCEEEEeHH
Confidence 44599998 6677777766 7778888744
No 74
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=34.03 E-value=2.1e+02 Score=21.63 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=36.6
Q ss_pred ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeec
Q 033955 13 LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVG 78 (107)
Q Consensus 13 l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG 78 (107)
+.|......+++++.+..+... .. .+. ..|-.||.|+ .+|+..+.+| ..-++++|-+
T Consensus 145 f~GQ~fi~~~l~KI~~l~~~~~-~~--~~~-~~IeVDGGI~--~eti~~l~~a---GaDi~V~GSa 201 (223)
T PRK08745 145 FGGQAFIPSALDKLRAIRKKID-AL--GKP-IRLEIDGGVK--ADNIGAIAAA---GADTFVAGSA 201 (223)
T ss_pred CCCccccHHHHHHHHHHHHHHH-hc--CCC-eeEEEECCCC--HHHHHHHHHc---CCCEEEEChh
Confidence 4566666667777766544321 11 222 5688999997 5677777766 6678888744
No 75
>PRK09271 flavodoxin; Provisional
Probab=33.71 E-value=1e+02 Score=21.47 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=29.7
Q ss_pred ceEEEEEEe----CCCcc-CHHHHHHHHHHccCCCeEEEEEeecCCCcc
Q 033955 40 KYFVLLIIT----DGVLT-DLQETKDALVRASDLPLSILIVGVGGADFT 83 (107)
Q Consensus 40 ~Y~vLlIlT----DG~i~-D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~ 83 (107)
.|-+++|-| +|... ++....+.+.+....+..+.++|.|+..|.
T Consensus 51 ~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsgd~~~~ 99 (160)
T PRK09271 51 DYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTGETQWG 99 (160)
T ss_pred cCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecCCCCcC
Confidence 467777766 46655 477777777664333456888999987773
No 76
>PRK05325 hypothetical protein; Provisional
Probab=33.31 E-value=87 Score=26.09 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=37.8
Q ss_pred cccCCCChHHHHHHHHHHHHhcccCCCCceEEEEE-EeCCCc--cCHHHHHHHHH
Q 033955 12 ALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLI-ITDGVL--TDLQETKDALV 63 (107)
Q Consensus 12 ~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlI-lTDG~i--~D~~~t~~~Iv 63 (107)
+=+|.|..|..++.+.++..+. .....|.|=.+ .|||+. +|...+.+.+.
T Consensus 284 ~esGGT~vSSA~~l~~eIi~~r--Ypp~~wNIY~f~aSDGDNw~~D~~~~~~ll~ 336 (401)
T PRK05325 284 RESGGTIVSSAYKLALEIIEER--YPPAEWNIYAFQASDGDNWSSDNPRCVELLR 336 (401)
T ss_pred CCCCCeEehHHHHHHHHHHHhh--CCHhHCeeEEEEcccCCCcCCCCHHHHHHHH
Confidence 3479999999999999998864 24456776666 899987 67777776555
No 77
>PF00993 MHC_II_alpha: Class II histocompatibility antigen, alpha domain; InterPro: IPR001003 Major Histocompatibility Complex (MHC) glycoproteins are heterodimeric cell surface receptors that function to present antigen peptide fragments to T cells responsible for cell-mediated immune responses. MHC molecules can be subdivided into two groups on the basis of structure and function: class I molecules present intracellular antigen peptide fragments (~10 amino acids) on the surface of the host cells to cytotoxic T cells; class II molecules present exogenously derived antigenic peptides (~15 amino acids) to helper T cells. MHC class I and II molecules are assembled and loaded with their peptide ligands via different mechanisms. However, both present peptide fragments rather than entire proteins to T cells, and are required to mount an immune response. Class II MHC glycoproteins are expressed on the surface of antigen-presenting cells (APC), including macrophages, dendritic cells and B cells. MHC II proteins present peptide antigens that originate extracellularly from foreign bodies such as bacteria. Proteins from the pathogen are degraded into peptide fragments within the APC, which sequesters these fragments into the endosome so they can bind to MHC class II proteins, before being transported to the cell surface. MHC class II receptors display antigens for recognition by helper T cells (stimulate development of B cell clones) and inflammatory T cells (cause the release of lymphokines that attract other cells to site of infection) []. MHC class II molecules are comprised of two membrane-spanning chains, alpha and beta, of similar size. Both chains consist of two globular domains (N- and C-terminal), and a transmembrane segment to anchor them to the membrane []. A groove in the structure acts as the peptide-binding site. This entry represents the N-terminal domain (also called alpha-1 domain) of the alpha chain. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane, 0042613 MHC class II protein complex; PDB: 3LQZ_A 2ICW_D 1SJH_A 1KG0_A 1D6E_A 1D5M_A 1ZGL_G 1SJE_A 1J8H_A 2IAM_A ....
Probab=33.07 E-value=28 Score=22.41 Aligned_cols=26 Identities=15% Similarity=-0.010 Sum_probs=21.2
Q ss_pred EEEEEeecCCCcccccccccccccee
Q 033955 71 SILIVGVGGADFTQMEVRNVFQLEYL 96 (107)
Q Consensus 71 SiIiVGvG~~~f~~m~~LD~d~~~~~ 96 (107)
-+.++|-.+.+-..|..||||++=+-
T Consensus 6 ~~~~~~~s~~~ge~~~~~DgEE~~y~ 31 (82)
T PF00993_consen 6 DIIFYQCSDPSGEYMYGFDGEELFYA 31 (82)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCCcceeeccCCceEEEE
Confidence 36778888889999999999987543
No 78
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=32.24 E-value=1.8e+02 Score=22.14 Aligned_cols=55 Identities=27% Similarity=0.413 Sum_probs=35.0
Q ss_pred ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEe
Q 033955 13 LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVG 76 (107)
Q Consensus 13 l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVG 76 (107)
+.|......+++++.+..+... ...|. ..|-.||.++ .+|+..+.+| ..-++++|
T Consensus 143 f~GQ~fi~~~l~KI~~lr~~~~---~~~~~-~~IeVDGGI~--~~~i~~~~~a---Gad~~V~G 197 (229)
T PRK09722 143 FAGQPFIPEMLDKIAELKALRE---RNGLE-YLIEVDGSCN--QKTYEKLMEA---GADVFIVG 197 (229)
T ss_pred CcchhccHHHHHHHHHHHHHHH---hcCCC-eEEEEECCCC--HHHHHHHHHc---CCCEEEEC
Confidence 4566666667777665543211 12333 6789999998 5577777766 67777777
No 79
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=31.79 E-value=65 Score=23.22 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=39.1
Q ss_pred cCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCCCcccccc
Q 033955 14 AGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGADFTQMEV 87 (107)
Q Consensus 14 ~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~m~~ 87 (107)
.|+-.|+-+=+-+.+.+++..... ...==||+.||.......+.+++.+. .+.|=+||+-..+...-..
T Consensus 53 ~~~dDy~~M~Evl~RR~~~~~~~~--~~lPDLilIDGG~gQl~aa~~~l~~l---gl~i~viglaK~~~~~t~~ 121 (155)
T PF08459_consen 53 DGGDDYAAMREVLTRRFKRLKEEK--EPLPDLILIDGGKGQLNAAKEVLKEL---GLNIPVIGLAKNDEHKTGK 121 (155)
T ss_dssp STT-HHHHHHHHHHHHHCCCHHHT------SEEEESSSHHHHHHHHHHHHCT---T----EEEEESSSSE----
T ss_pred CCCcHHHHHHHHHHHHHhcccccC--CCCCCEEEEcCCHHHHHHHHHHHHHc---CCCeEEEEEEecccccccc
Confidence 466677666555556655422111 11222788999999999999988844 5557799999877665443
No 80
>PF11426 Tn7_TnsC_Int: Tn7 transposition regulator TnsC; InterPro: IPR021542 TnsC is a molecular switch that regulates transposition and interacts with TnsA which is a component of the transposase. The two proteins interact via the residues 504-555 on TnsC. The TnsA/TnsC interaction is very important in Tn7 transposition []. ; PDB: 1T0F_C.
Probab=31.50 E-value=12 Score=22.08 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=10.5
Q ss_pred ccccccccceeeccc
Q 033955 86 EVRNVFQLEYLLTSI 100 (107)
Q Consensus 86 ~~LD~d~~~~~~~~~ 100 (107)
..||.|++|++++..
T Consensus 7 ~tL~sdDLRf~ySq~ 21 (48)
T PF11426_consen 7 HTLDSDDLRFIYSQS 21 (48)
T ss_dssp GGS-TT-HHHHHHTS
T ss_pred cCCchHHHHHHHhcC
Confidence 478999999998764
No 81
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=31.15 E-value=48 Score=26.98 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=27.5
Q ss_pred EeCCCccCHHHHHHHHHHcc-------CCCeEEEEEeecCCCcc
Q 033955 47 ITDGVLTDLQETKDALVRAS-------DLPLSILIVGVGGADFT 83 (107)
Q Consensus 47 lTDG~i~D~~~t~~~Iv~As-------~lPiSiIiVGvG~~~f~ 83 (107)
+-+|.|.|++++.++|.+|= ..++.=+++|++.....
T Consensus 46 i~~G~I~d~~~~~~aI~~av~~ae~~~g~~i~~v~v~i~g~~v~ 89 (420)
T PRK09472 46 MDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHIS 89 (420)
T ss_pred ccCCEEEcHHHHHHHHHHHHHHHHHHhCCcccEEEEEecCcceE
Confidence 45788999988777776652 26888899999876543
No 82
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=30.88 E-value=57 Score=23.25 Aligned_cols=40 Identities=23% Similarity=0.499 Sum_probs=28.8
Q ss_pred EeCCCccCHHHHHHHHHHcc-------CCCeEEEEEeecCCCccccc
Q 033955 47 ITDGVLTDLQETKDALVRAS-------DLPLSILIVGVGGADFTQME 86 (107)
Q Consensus 47 lTDG~i~D~~~t~~~Iv~As-------~lPiSiIiVGvG~~~f~~m~ 86 (107)
+-+|.|.|.+++.++|.+|= ..++.=+.+++++.......
T Consensus 37 i~~G~I~d~~~~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~~v~~~~ 83 (187)
T smart00842 37 IRKGVIVDIEAAARAIREAVEEAERMAGVKIDSVYVGISGRHLKSVN 83 (187)
T ss_pred ccCcEEECHHHHHHHHHHHHHHHHHHhCCcccEEEEEEcCCceEEEe
Confidence 45789999887776666552 46777899999987764444
No 83
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=30.17 E-value=83 Score=25.34 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHHHhcccCCCCceEEEEEEeCCCcc--C-----HHHHHHHHHHccCCCeEEEEEeec--CCCccccc
Q 033955 27 ARIAGQSLSYDRSKYFVLLIITDGVLT--D-----LQETKDALVRASDLPLSILIVGVG--GADFTQME 86 (107)
Q Consensus 27 ~~~a~~~~~~~~~~Y~vLlIlTDG~i~--D-----~~~t~~~Iv~As~lPiSiIiVGvG--~~~f~~m~ 86 (107)
.+.|++.... ..--+|.|-++.++.. | +.++++.+.+++++|+.| -|.| ..|.+.|+
T Consensus 78 ~~~Ak~q~~~-~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~I--d~s~n~~kD~evle 143 (319)
T PRK04452 78 AAWAKKCVEE-YGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLII--GGSGNPEKDAEVLE 143 (319)
T ss_pred HHHHHHHHHH-hCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEE--ecCCCCCCCHHHHH
Confidence 6667643211 2234555666666554 2 788999999999999995 4444 33555553
No 84
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=29.38 E-value=64 Score=25.32 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=33.2
Q ss_pred eEEEEEEeCC-CccCHHHHHHHHHHccCCCeEEEEEeecCCCcccc
Q 033955 41 YFVLLIITDG-VLTDLQETKDALVRASDLPLSILIVGVGGADFTQM 85 (107)
Q Consensus 41 Y~vLlIlTDG-~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~m 85 (107)
|=-++.+|+| ...+.++..+.|.+.+..++|+ -||+|..+.+..
T Consensus 54 gDN~iavtNGI~~~~~~~i~e~I~n~~PV~ls~-GIG~g~TP~eA~ 98 (254)
T PRK02240 54 FDNMIAVTNGIDLEDHARIQESIRNRYPVTVSM-GIGTAETPYEAQ 98 (254)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHhcCCCceEE-EEEecCCHHHHH
Confidence 3346778999 5678888999999877777786 358888776665
No 85
>PF02832 Flavi_glycop_C: Flavivirus glycoprotein, immunoglobulin-like domain; InterPro: IPR000336 Flaviruses are small, enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Yellow fever virus, West Nile virus, Tick-borne encephalitis virus, Japanese encephalitis virus, and Dengue virus 2 []. Flaviviruses consist of three structural proteins: the core nucleocapsid protein C (IPR001122 from INTERPRO), and the envelope glycoproteins M (IPR000069 from INTERPRO) and E. Glycoprotein E is a class II viral fusion protein that mediates both receptor binding and fusion. Class II viral fusion proteins are found in flaviviruses and alphaviruses, and are structurally distinct from class I fusion proteins from influenza-type viruses and retroviruses. Glycoprotein E is comprised of three domains: domain I (dimerisation domain) is an 8-stranded beta barrel, domain II (central domain) is an elongated domain composed of twelve beta strands and two alpha helices, and domain III (immunoglobulin-like domain) is an IgC-like module with ten beta strands. This entry represents the Ig-like domain III, which contains a putative receptor-binding loop [].; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2R29_A 1PJW_A 4FFY_A 3IRC_A 4ALA_C 3G7T_A 2I69_A 1ZTX_E 2P5P_A 1URZ_F ....
Probab=28.60 E-value=36 Score=23.00 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=12.0
Q ss_pred CCeEEEEEeecCCCc
Q 033955 68 LPLSILIVGVGGADF 82 (107)
Q Consensus 68 lPiSiIiVGvG~~~f 82 (107)
+.-|+|+||.|+.+.
T Consensus 77 fGdS~I~VG~g~~~l 91 (97)
T PF02832_consen 77 FGDSYIIVGVGDDQL 91 (97)
T ss_dssp SEEEEEEESSSTTTE
T ss_pred CCceEEEEecCCCce
Confidence 567999999998653
No 86
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=28.48 E-value=39 Score=25.64 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.2
Q ss_pred EEEEeecCCCcccc
Q 033955 72 ILIVGVGGADFTQM 85 (107)
Q Consensus 72 iIiVGvG~~~f~~m 85 (107)
|.+||+|.++.+.|
T Consensus 2 I~vVGiGp~~~~~L 15 (210)
T COG2241 2 ITVVGIGPGGPEGL 15 (210)
T ss_pred EEEEEeCCCChhhh
Confidence 67899998886655
No 87
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=27.58 E-value=49 Score=26.02 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=25.2
Q ss_pred EEEEeCC--CccCHHHHHHHHHHccCCCeEEEEE
Q 033955 44 LLIITDG--VLTDLQETKDALVRASDLPLSILIV 75 (107)
Q Consensus 44 LlIlTDG--~i~D~~~t~~~Iv~As~lPiSiIiV 75 (107)
++|+||+ +++|.+..+..|.-|..+-+-=|+.
T Consensus 2 viV~TDi~~EpDD~~SlvR~LlYsNe~dieGiva 35 (260)
T PF07632_consen 2 VIVLTDIGNEPDDAQSLVRLLLYSNEFDIEGIVA 35 (260)
T ss_dssp EEEEE-TTS-THHHHHHHHHHHTGGGSEEEEEEE
T ss_pred EEEeCCCCCCCchHHHHHHHHHhccccceeEEEE
Confidence 5899999 9999999999999998877665554
No 88
>PRK07308 flavodoxin; Validated
Probab=27.15 E-value=1.7e+02 Score=19.71 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=22.4
Q ss_pred CCCcc-CHHHHHHHHHHccCCCeEEEEEeecCCCc
Q 033955 49 DGVLT-DLQETKDALVRASDLPLSILIVGVGGADF 82 (107)
Q Consensus 49 DG~i~-D~~~t~~~Iv~As~lPiSiIiVGvG~~~f 82 (107)
+|.+. +.....+.+....--...+.++|.|+..|
T Consensus 61 ~G~~p~~~~~fl~~l~~~~l~~k~~~vfG~Gd~~y 95 (146)
T PRK07308 61 DGELPDEIVDFYEDLADLDLSGKIYGVVGSGDTFY 95 (146)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEEeeCCCCH
Confidence 45565 56777777765533345678899998654
No 89
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=26.17 E-value=53 Score=25.47 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=9.0
Q ss_pred HHHHHHHHHccCCCeEEEEEeec
Q 033955 56 QETKDALVRASDLPLSILIVGVG 78 (107)
Q Consensus 56 ~~t~~~Iv~As~lPiSiIiVGvG 78 (107)
++..++|.+ |+.| ||.|||
T Consensus 97 e~varai~~-~~~P---visaIG 115 (319)
T PF02601_consen 97 EEVARAIAA-SPIP---VISAIG 115 (319)
T ss_pred HHHHHHHHh-CCCC---EEEecC
Confidence 334444443 3445 456666
No 90
>PLN00115 pollen allergen group 3; Provisional
Probab=26.15 E-value=1.3e+02 Score=20.73 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=10.2
Q ss_pred CCceEEEEEEeCCCc
Q 033955 38 RSKYFVLLIITDGVL 52 (107)
Q Consensus 38 ~~~Y~vLlIlTDG~i 52 (107)
+++|+-|.+++||+|
T Consensus 33 gSnp~yL~ll~~~dI 47 (118)
T PLN00115 33 GSSSTSLELVTNVAI 47 (118)
T ss_pred CCCcceEEEEEeCCE
Confidence 345666677788865
No 91
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=26.12 E-value=2.9e+02 Score=20.88 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHhcccCCCCce----EEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC
Q 033955 18 LFGQVINTAARIAGQSLSYDRSKY----FVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 18 ~fapVI~~~~~~a~~~~~~~~~~Y----~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
+.....+++.+...... +...| ++-+|.+||- |.+...+.........+ +...|||.
T Consensus 122 D~~~~~~~~r~~f~~~~--~~~g~kvl~~~~Ii~Sd~L--de~~i~~l~~~~~~~g~-~~~fGVGT 182 (245)
T PF04095_consen 122 DPAELSEKLRKIFDEAV--GIKGYKVLPSKKIIASDGL--DEEKIEELLEQGAEKGF-NDSFGVGT 182 (245)
T ss_dssp -HHHHHHHHHHHHHHTE--TTTGGEE-TCSEEEEESS---SHHHHHHHHHHHCCTTS-EEEEEESH
T ss_pred ChHHHHHHHHHHHHHHh--CCCCccccceEEEEEeCCC--CHHHHHHHHHHhhcccc-eeEeecCc
Confidence 33445555555554431 12334 7888899986 55554455555555566 88899996
No 92
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=25.91 E-value=1.1e+02 Score=21.32 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=16.6
Q ss_pred eEEEEEEeCCCc--cCHHHHHHHHHHcc
Q 033955 41 YFVLLIITDGVL--TDLQETKDALVRAS 66 (107)
Q Consensus 41 Y~vLlIlTDG~i--~D~~~t~~~Iv~As 66 (107)
.-++++.|||-. .+.++..+.|.+..
T Consensus 149 gd~l~l~TDGl~e~~~~~~l~~~l~~~~ 176 (193)
T smart00331 149 GDLLLLYTDGLTEARNPERLEELLEELL 176 (193)
T ss_pred CCEEEEECCCccccCChHHHHHHHHHhc
Confidence 458899999955 34455555555543
No 93
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=25.41 E-value=1.2e+02 Score=24.32 Aligned_cols=41 Identities=32% Similarity=0.545 Sum_probs=27.7
Q ss_pred CceEEEEEEeCCCc----cCHHHHHHHHHHccCCCeEEEEEeecCCC
Q 033955 39 SKYFVLLIITDGVL----TDLQETKDALVRASDLPLSILIVGVGGAD 81 (107)
Q Consensus 39 ~~Y~vLlIlTDG~i----~D~~~t~~~Iv~As~lPiSiIiVGvG~~~ 81 (107)
.+|. ++++.||+. ....+..++++.+..+|=.+ +|||+..+
T Consensus 96 ~k~p-vl~~~DG~~~~~~g~i~~~~dsli~~g~i~pai-~vgid~~d 140 (299)
T COG2382 96 EKYP-VLYLQDGQDWFRSGRIPRILDSLIAAGEIPPAI-LVGIDYID 140 (299)
T ss_pred cccc-EEEEeccHHHHhcCChHHHHHHHHHcCCCCCce-EEecCCCC
Confidence 3444 478899966 45677888888888765443 46777655
No 94
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=25.28 E-value=90 Score=25.71 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=16.8
Q ss_pred HHHHHHHHccCCCeEEEEEeecCC
Q 033955 57 ETKDALVRASDLPLSILIVGVGGA 80 (107)
Q Consensus 57 ~t~~~Iv~As~lPiSiIiVGvG~~ 80 (107)
...+.|.+..+-.=++++||||+.
T Consensus 327 ~v~~iI~e~~~pg~tViviGVGNT 350 (355)
T PF07431_consen 327 RVKEIIRENTKPGDTVIVIGVGNT 350 (355)
T ss_pred HHHHHHHhcccCCCeEEEEecccc
Confidence 344555555555689999999984
No 95
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=24.92 E-value=2.7e+02 Score=21.21 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=33.9
Q ss_pred ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEee
Q 033955 13 LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGV 77 (107)
Q Consensus 13 l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGv 77 (107)
+.|..-...+++++.+..+... . ..|. ..|-.||.++ .+|+..+.+| ..-++++|-
T Consensus 153 fgGQ~f~~~~l~KI~~lr~~~~-~--~~~~-~~IeVDGGI~--~~ti~~l~~a---GaD~~V~GS 208 (228)
T PRK08091 153 TGTKAPSDLILDRVIQVENRLG-N--RRVE-KLISIDGSMT--LELASYLKQH---QIDWVVSGS 208 (228)
T ss_pred CCCccccHHHHHHHHHHHHHHH-h--cCCC-ceEEEECCCC--HHHHHHHHHC---CCCEEEECh
Confidence 4566655566676665443221 1 2344 4588999997 5577777776 555677663
No 96
>PRK11053 dihydropteridine reductase; Provisional
Probab=24.55 E-value=2.8e+02 Score=20.05 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHH--------HHccCCCeEEEEEee
Q 033955 19 FGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDAL--------VRASDLPLSILIVGV 77 (107)
Q Consensus 19 fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~I--------v~As~lPiSiIiVGv 77 (107)
=...|+.+.+.|..+.+..+.++.-+++++|-+. +++..+++ ..+.+.|.-+++++-
T Consensus 23 ~~e~l~~ileaa~~APS~~N~Qpw~fvvV~~~e~--~~~l~~~~~~~~~~~~~~~~~a~~~iv~~~~ 87 (217)
T PRK11053 23 PAEQIEQIKTLLRFSPSSVNSQPWHFIVASTEEG--KARIAKAAAGNYAFNERKILDASHVVVFCAK 87 (217)
T ss_pred CHHHHHHHHHHHHhCCCcCCCcCeEEEEecCHHH--HHHHHHHHhhhccccchhhcCCCEEEEEEec
Confidence 3567888888887765444556666677776221 12222222 123457888888775
No 97
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=24.11 E-value=85 Score=21.19 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=30.2
Q ss_pred ceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC
Q 033955 40 KYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 40 ~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
.|-+ +++|+.-..+..+..+.+...+-+|+-+.|=+-|.
T Consensus 46 ~~~i-Iiite~~a~~i~~~i~~~~~~~~~P~iv~IPs~~~ 84 (104)
T COG1436 46 DVGI-ILITEDLAEKIREEIRRIIRSSVLPAIVEIPSPGK 84 (104)
T ss_pred CceE-EEEeHHHHhhhHHHHHHHhhccCccEEEEeCCCCC
Confidence 4444 67888899999999999999999998776644333
No 98
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=23.79 E-value=2.1e+02 Score=19.70 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=30.9
Q ss_pred ceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCCCccc
Q 033955 40 KYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGADFTQ 84 (107)
Q Consensus 40 ~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~ 84 (107)
.++||+--|.|.-.-.+++.+-+.+-.+ .-.=++|-|+.+|..
T Consensus 36 ~~~vliTyT~G~G~vP~~~~~Fle~~~n--~~~gV~gSGn~n~g~ 78 (125)
T TIGR00333 36 QEFVLITYTGGFGAVPKQTISFLNKKHN--LLRGVAASGNKVWGD 78 (125)
T ss_pred CCEEEEecCCCCCcCCHHHHHHHHhhhh--cEEEEEEcCCCchHH
Confidence 4566777888876667888888876666 444457999988843
No 99
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=23.11 E-value=71 Score=22.62 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=10.1
Q ss_pred EEEEeecCCCcccc
Q 033955 72 ILIVGVGGADFTQM 85 (107)
Q Consensus 72 iIiVGvG~~~f~~m 85 (107)
+.+||+|.++.+.|
T Consensus 2 l~iVG~GpG~~~~l 15 (210)
T PF00590_consen 2 LYIVGLGPGDPDLL 15 (210)
T ss_dssp EEEEEEBSSSGGGS
T ss_pred EEEEecCCCCHHHH
Confidence 56899998875543
No 100
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=23.04 E-value=69 Score=25.45 Aligned_cols=75 Identities=19% Similarity=0.102 Sum_probs=49.5
Q ss_pred HHHhhccccccCCCChHHHHHHHHHHHHhccc-------CCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEe
Q 033955 4 YASALNNVALAGPTLFGQVINTAARIAGQSLS-------YDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVG 76 (107)
Q Consensus 4 Y~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~-------~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVG 76 (107)
|.+....++++=||.=-|-++++++.+-+... ..+..-.-++|+.| |=.|=+|=
T Consensus 207 ~~kg~griafaip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~D-------------------PDgheicf 267 (299)
T KOG2943|consen 207 RAKGFGRIAFAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILAD-------------------PDGHEICF 267 (299)
T ss_pred ccccceeEEEeccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEEC-------------------CCCceEEE
Confidence 45667778888899999999999988865321 11222233344444 44455677
Q ss_pred ecCCCccccccccccccceee
Q 033955 77 VGGADFTQMEVRNVFQLEYLL 97 (107)
Q Consensus 77 vG~~~f~~m~~LD~d~~~~~~ 97 (107)
||+.+|..+.+.|.+.-+.|.
T Consensus 268 Vdde~F~~lsk~d~~g~k~ld 288 (299)
T KOG2943|consen 268 VDDEGFRKLSKIDDKGEKELD 288 (299)
T ss_pred eccHHHHHHhccCchhHHHHH
Confidence 899999999999955444443
No 101
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=22.87 E-value=2.7e+02 Score=19.28 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=31.8
Q ss_pred CceEEEEEEeCCC----ccCHHHHHHHHHHccCCCeEEEEEeecCCCccc
Q 033955 39 SKYFVLLIITDGV----LTDLQETKDALVRASDLPLSILIVGVGGADFTQ 84 (107)
Q Consensus 39 ~~Y~vLlIlTDG~----i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~ 84 (107)
..+++|+.-|-|. -.=.+++++-|.+..+...-.-++|-|+.+|..
T Consensus 39 ~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~g~ 88 (134)
T PRK03600 39 DEPYILITPTYGGGGTAGAVPKQVIRFLNDEHNRKLLRGVIASGNRNFGD 88 (134)
T ss_pred CCCEEEEEeccCCCCcCCcccHHHHHHHhccccCCcEEEEEEecCchHHH
Confidence 4578888888664 223455666676655666778889999998844
No 102
>PRK02551 flavoprotein NrdI; Provisional
Probab=22.75 E-value=1.4e+02 Score=21.41 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=31.9
Q ss_pred CceEEEEEEeC-C--Ccc-----C--HHHHHHHHHHccCCCeEEEEEeecCCCccccc
Q 033955 39 SKYFVLLIITD-G--VLT-----D--LQETKDALVRASDLPLSILIVGVGGADFTQME 86 (107)
Q Consensus 39 ~~Y~vLlIlTD-G--~i~-----D--~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~m~ 86 (107)
..++||+.-|- | ... . .+++.+-+....+.-+-.=++|.|+.+|...-
T Consensus 54 ~~p~vli~pTY~~gG~~~~~~~~~~vp~~v~dFL~~~~N~~~~~gVigsGNrNfg~~F 111 (154)
T PRK02551 54 TEPFVAFLPTYLEGGNGIDNGDVEILTTPLGDFIAYHDNAKRCLGIIGSGNRNFNNQY 111 (154)
T ss_pred CCCEEEEEeeecCCCCCcccCccccchHHHHHHHcchhhhhheEEEEeecccHHHHHH
Confidence 46888888776 2 222 2 45677788655555555667999999987543
No 103
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=22.50 E-value=1e+02 Score=18.68 Aligned_cols=57 Identities=12% Similarity=0.199 Sum_probs=37.0
Q ss_pred ccccccCCCChHHHHHHHHHHHHhccc--------CCCCceEEEEEEeCCCccCHHHHHHHHHHc
Q 033955 9 NNVALAGPTLFGQVINTAARIAGQSLS--------YDRSKYFVLLIITDGVLTDLQETKDALVRA 65 (107)
Q Consensus 9 ~~v~l~gPT~fapVI~~~~~~a~~~~~--------~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~A 65 (107)
=++.+.|.....|+|.++++...-..+ -.+..+-.+++--.|+..+.++.++.+.+.
T Consensus 5 ~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~ 69 (76)
T PF09383_consen 5 VRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQ 69 (76)
T ss_dssp EEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHT
T ss_pred EEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHC
Confidence 357788999999999999887643211 123345555554458777777777777654
No 104
>PRK09455 rseB anti-sigma E factor; Provisional
Probab=21.23 E-value=2.9e+02 Score=22.00 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=41.2
Q ss_pred CCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCCCccccccccccccceeeccceee
Q 033955 38 RSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGADFTQMEVRNVFQLEYLLTSIELL 103 (107)
Q Consensus 38 ~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~m~~LD~d~~~~~~~~~~~~ 103 (107)
..+|...++...|+ +++ |+-|.=.-.|+.+++.++.|||..-+.++.++++-
T Consensus 41 ~lnY~g~fV~~~~~--~i~------------s~ri~H~~~~~~e~erL~~LdG~~rEviR~~d~V~ 92 (319)
T PRK09455 41 SLNYELSFINITKQ--GIE------------SLRYRHARLDNKPLAQLLQMDGPRREIIQRGNEIS 92 (319)
T ss_pred hCCeEEEEEEEeCC--eEE------------EEEEEEEEeCCEEEEEEEecCCCceEEEEECCEEE
Confidence 36799888877774 232 66666666788899999999999999999998873
No 105
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=21.11 E-value=1.4e+02 Score=20.22 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=44.5
Q ss_pred ccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHH-HHHHHHHHc-cCCCeEEEEEeecCCCccccccc
Q 033955 11 VALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQ-ETKDALVRA-SDLPLSILIVGVGGADFTQMEVR 88 (107)
Q Consensus 11 v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~-~t~~~Iv~A-s~lPiSiIiVGvG~~~f~~m~~L 88 (107)
|-+.+|++..-+-..+.++.++.... -..-.+.++.|-|.-.+.. ...+.+.+. ...|..+-..| |.-+++.|..+
T Consensus 47 vi~gspiy~g~~~~~~~~fi~~~~~~-l~~k~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-G~~~~~kl~~~ 124 (143)
T PF12724_consen 47 VIFGSPIYAGRIPGEMREFIKKNKDN-LKNKKVALFSVGGSSPESEKYIKKFLKEKLRKKPDDFALFG-GALDYEKLSFF 124 (143)
T ss_pred EEEEEEEECCcCCHHHHHHHHHHHHH-HcCCcEEEEEEeCCCCchHHHHHHHHHHhcccCCCEEEEec-ceeccccCCHH
Confidence 44566777666666666666543211 1234455666666544433 333455443 34688888777 77778777766
Q ss_pred c
Q 033955 89 N 89 (107)
Q Consensus 89 D 89 (107)
|
T Consensus 125 ~ 125 (143)
T PF12724_consen 125 D 125 (143)
T ss_pred H
Confidence 6
No 106
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=20.95 E-value=2.3e+02 Score=28.04 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=35.2
Q ss_pred HHHHhhccccccCCCCh-----HHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHc
Q 033955 3 AYASALNNVALAGPTLF-----GQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRA 65 (107)
Q Consensus 3 aY~~~l~~v~l~gPT~f-----apVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~A 65 (107)
.|-+.+++|||.||-.. .-.+-+.+...-++ ++ .-.-+|+-||..+-+..-.+.-..+
T Consensus 2170 ~yirqirkvQP~GPYrl~GYSyG~~l~f~ma~~Lqe--~~---~~~~lillDGspty~~~Y~~~yr~~ 2232 (2376)
T KOG1202|consen 2170 YYIRQIRKVQPEGPYRLAGYSYGACLAFEMASQLQE--QQ---SPAPLILLDGSPTYVLAYTQSYRAK 2232 (2376)
T ss_pred HHHHHHHhcCCCCCeeeeccchhHHHHHHHHHHHHh--hc---CCCcEEEecCchHHHHHHHHHHHHH
Confidence 58899999999999544 34444443333222 11 1122899999987765554444433
No 107
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=20.93 E-value=78 Score=21.09 Aligned_cols=50 Identities=20% Similarity=0.129 Sum_probs=35.5
Q ss_pred CCccCHHHHHHHHHHcc--CCCeEEEEEeecCCCccccccccccccceeecc
Q 033955 50 GVLTDLQETKDALVRAS--DLPLSILIVGVGGADFTQMEVRNVFQLEYLLTS 99 (107)
Q Consensus 50 G~i~D~~~t~~~Iv~As--~lPiSiIiVGvG~~~f~~m~~LD~d~~~~~~~~ 99 (107)
.+++|.++..+.+.++. .-|+-++|-.-|......+.+++.++.+..+..
T Consensus 59 ~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~ 110 (167)
T PF00106_consen 59 CDLSDPESIRALIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRV 110 (167)
T ss_dssp SETTSHHHHHHHHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhcccc
Confidence 55667766666665554 579999999999877888888876666655443
No 108
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=20.70 E-value=1.1e+02 Score=22.06 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.3
Q ss_pred eCCCc-cCHHHHHHHHHHccCCCeEEE
Q 033955 48 TDGVL-TDLQETKDALVRASDLPLSIL 73 (107)
Q Consensus 48 TDG~i-~D~~~t~~~Iv~As~lPiSiI 73 (107)
--|+| +|+.+-+..-.++..||+++.
T Consensus 5 LsGEIHtdWRe~I~~ga~~~~L~v~F~ 31 (144)
T TIGR03646 5 LAGEIHTDWREEIKEGAKSKNLPIVFS 31 (144)
T ss_pred EcCcccchHHHHHHHHHHHcCCCeEEe
Confidence 45877 699988888888889999873
No 109
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=20.55 E-value=1.5e+02 Score=18.21 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHH
Q 033955 20 GQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDAL 62 (107)
Q Consensus 20 apVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~I 62 (107)
.+.+.+.++...+.. ...+. ++|++|+.-....+.....
T Consensus 9 ~~~l~~~l~s~~~~~---~~~~~-i~i~~~~~~~~~~~~~~~~ 47 (156)
T cd00761 9 EPYLERCLESLLAQT---YPNFE-VIVVDDGSTDGTLEILEEY 47 (156)
T ss_pred HHHHHHHHHHHHhCC---ccceE-EEEEeCCCCccHHHHHHHH
Confidence 455555555554321 12344 5678888665554444444
No 110
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=20.25 E-value=1.1e+02 Score=24.33 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=28.9
Q ss_pred EEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCCCcccccccccccc
Q 033955 44 LLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGADFTQMEVRNVFQL 93 (107)
Q Consensus 44 LlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~m~~LD~d~~ 93 (107)
-+|+|--+-+..-...-.+....++|++. ||.|.. -+.++.+|.+..
T Consensus 263 giIlTKlD~t~~~G~~l~~~~~~~~Pi~~--v~~Gq~-~~Dl~~~~~~~~ 309 (318)
T PRK10416 263 GIILTKLDGTAKGGVVFAIADELGIPIKF--IGVGEG-IDDLQPFDAEEF 309 (318)
T ss_pred EEEEECCCCCCCccHHHHHHHHHCCCEEE--EeCCCC-hhhCccCCHHHH
Confidence 45666555554444555555566788776 788865 377777765543
No 111
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=20.12 E-value=2.3e+02 Score=18.46 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=26.9
Q ss_pred hccccccC--CCC--hHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHH
Q 033955 8 LNNVALAG--PTL--FGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQE 57 (107)
Q Consensus 8 l~~v~l~g--PT~--fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~ 57 (107)
...|.++| |+. ..|-+.+.++.+++.. ..-..+.|.|...+...
T Consensus 53 ~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~------~~~~~~~tng~~~~~~~ 100 (139)
T PF13353_consen 53 IKGIVLTGGEPLLHENYDELLEILKYIKEKF------PKKIIILTNGYTLDELL 100 (139)
T ss_dssp CCEEEEECSTGGGHHSHHHHHHHHHHHHHTT-------SEEEEEETT--HHHHH
T ss_pred ceEEEEcCCCeeeeccHhHHHHHHHHHHHhC------CCCeEEEECCCchhHHH
Confidence 35667777 777 5677777777777642 13456788887755443
No 112
>PHA01749 coat protein
Probab=20.06 E-value=95 Score=21.50 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=23.9
Q ss_pred ccccCCCChHHHHHHHHHHHHhcccCCCCc
Q 033955 11 VALAGPTLFGQVINTAARIAGQSLSYDRSK 40 (107)
Q Consensus 11 v~l~gPT~fapVI~~~~~~a~~~~~~~~~~ 40 (107)
..++-||--+.++..+...|++.++.+-++
T Consensus 22 ~afsnptvastilsnvs~iaqqnfqtnvpk 51 (134)
T PHA01749 22 NAFSNPTVASTILSNVSPVAQQNFQTNVPK 51 (134)
T ss_pred ccccCchHHHHHHHhhHHHHHHhhhcCCcc
Confidence 467899999999999999999876544333
Done!