Query 033955
Match_columns 107
No_of_seqs 107 out of 445
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:39:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2n_F Anthrax toxin receptor 98.3 4.8E-06 1.6E-10 57.4 8.4 88 5-92 68-160 (185)
2 1shu_X Anthrax toxin receptor 98.2 9E-06 3.1E-10 55.8 8.1 81 10-92 75-157 (182)
3 2xgg_A Microneme protein 2; A/ 98.1 1.4E-05 4.8E-10 55.5 7.5 76 4-79 84-161 (178)
4 4hqo_A Sporozoite surface prot 98.0 2.9E-05 9.9E-10 57.6 8.6 86 5-91 87-177 (266)
5 1n3y_A Integrin alpha-X; alpha 98.0 6.5E-06 2.2E-10 57.4 4.7 88 4-91 72-167 (198)
6 4hqf_A Thrombospondin-related 98.0 3.6E-05 1.2E-09 57.2 8.3 79 12-91 101-180 (281)
7 1mf7_A Integrin alpha M; cell 97.9 7.4E-06 2.5E-10 57.3 3.7 88 4-91 68-163 (194)
8 1ijb_A VON willebrand factor; 97.9 3.9E-05 1.3E-09 54.4 6.9 85 4-89 78-167 (202)
9 1q0p_A Complement factor B; VO 97.8 7.2E-05 2.5E-09 52.7 7.4 90 3-92 81-193 (223)
10 2b2x_A Integrin alpha-1; compu 97.8 0.00012 4.2E-09 52.3 8.4 77 4-80 85-164 (223)
11 1v7p_C Integrin alpha-2; snake 97.7 0.00017 5.7E-09 50.7 8.4 76 3-78 68-146 (200)
12 1pt6_A Integrin alpha-1; cell 97.7 0.00016 5.5E-09 51.3 8.3 76 4-79 70-148 (213)
13 1atz_A VON willebrand factor; 97.6 0.00025 8.4E-09 49.3 7.7 85 4-91 70-158 (189)
14 3ibs_A Conserved hypothetical 97.5 0.00016 5.4E-09 51.0 6.0 72 4-80 75-150 (218)
15 2x31_A Magnesium-chelatase 60 97.5 2.4E-06 8.2E-11 59.5 -3.6 84 4-89 67-161 (189)
16 4b4t_W RPN10, 26S proteasome r 97.4 0.001 3.5E-08 50.7 9.7 83 4-88 72-157 (268)
17 2x5n_A SPRPN10, 26S proteasome 97.4 0.0012 4E-08 47.4 9.5 84 3-88 70-155 (192)
18 4fx5_A VON willebrand factor t 97.4 0.00064 2.2E-08 54.9 8.6 83 3-89 146-230 (464)
19 2odp_A Complement C2; C3/C5 co 97.3 0.00026 8.9E-09 56.2 4.9 90 3-92 75-187 (509)
20 3hrz_D Complement factor B; se 97.0 0.0019 6.5E-08 53.3 7.8 88 4-91 310-420 (741)
21 3zqk_A VON willebrand factor; 96.9 0.00062 2.1E-08 48.0 3.4 80 4-90 86-169 (199)
22 1rrk_A Complement factor B; BB 96.8 0.0043 1.5E-07 48.8 7.8 87 5-91 69-178 (497)
23 1mjn_A Integrin alpha-L; rossm 96.8 0.0025 8.5E-08 44.1 5.7 80 6-91 67-153 (179)
24 3k6s_A Integrin alpha-X; cell 96.5 0.0016 5.5E-08 57.6 3.9 86 6-91 195-288 (1095)
25 1yvr_A RO autoantigen, 60-kDa 95.5 0.045 1.5E-06 44.5 7.7 63 13-83 441-507 (538)
26 2nvo_A RO sixty-related protei 94.1 0.16 5.5E-06 41.4 7.5 63 13-83 437-503 (535)
27 1jey_B KU80; double-strand DNA 93.7 0.21 7E-06 40.9 7.4 69 11-79 98-169 (565)
28 3rag_A Uncharacterized protein 92.2 0.089 3.1E-06 39.6 3.0 41 40-80 9-49 (242)
29 1jey_A KU70; double-strand DNA 86.6 2.8 9.6E-05 34.6 8.0 68 14-83 138-212 (609)
30 2ww8_A RRGA, cell WALL surface 58.9 16 0.00053 31.9 5.6 42 11-54 351-392 (893)
31 2qv6_A MJ0145, GTP cyclohydrol 44.7 14 0.00049 27.8 2.7 48 39-87 52-100 (268)
32 2jo8_A Serine/threonine-protei 39.7 3.5 0.00012 23.9 -1.1 21 79-99 1-21 (51)
33 4a2a_A Cell division protein F 36.1 24 0.00082 27.5 2.9 34 47-80 45-86 (419)
34 3rzn_A GLTP, glycolipid transf 33.4 26 0.0009 25.1 2.6 31 1-31 24-54 (209)
35 2guz_B Mitochondrial import in 31.5 28 0.00096 20.5 2.0 30 2-31 26-57 (65)
36 3hr4_A Nitric oxide synthase, 30.5 97 0.0033 22.2 5.2 34 49-82 99-135 (219)
37 2v1y_A Phosphatidylinositol-4, 28.6 34 0.0012 22.4 2.3 47 55-105 42-97 (108)
38 4djd_C C/Fe-SP, corrinoid/iron 27.3 38 0.0013 27.4 2.7 33 41-73 129-161 (446)
39 3m5k_A Putative NADH dehydroge 26.5 1.4E+02 0.0047 19.6 6.8 59 15-79 23-88 (172)
40 2h9a_A Carbon monoxide dehydro 23.7 49 0.0017 26.5 2.7 33 41-73 129-161 (445)
41 3kwk_A Putative NADH dehydroge 23.4 1.6E+02 0.0056 19.3 6.6 59 15-79 27-92 (175)
42 2jqm_A Envelope protein E; yel 23.2 34 0.0012 22.7 1.5 14 68-81 85-98 (112)
43 3kv0_A HET-C2; GLTP, glycolipi 23.2 30 0.001 25.0 1.3 31 1-31 43-73 (209)
44 1t0f_C Protein E, transposon T 22.0 15 0.00051 21.3 -0.5 14 87-100 14-27 (54)
45 3uzv_A Envelope protein; dengu 21.1 41 0.0014 22.4 1.5 14 68-81 79-92 (114)
No 1
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.26 E-value=4.8e-06 Score=57.38 Aligned_cols=88 Identities=19% Similarity=0.142 Sum_probs=64.0
Q ss_pred HHhhccc---cccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHH--HHHHHHHHccCCCeEEEEEeecC
Q 033955 5 ASALNNV---ALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQ--ETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 5 ~~~l~~v---~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~--~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
++.+..+ .+.|.|++..-|+++.+..............+++++|||..++-. ...++...+.+..+.+..||+|+
T Consensus 68 ~~~i~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg~ 147 (185)
T 3n2n_F 68 RQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVKD 147 (185)
T ss_dssp HHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECSS
T ss_pred HHHHHHHhhhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEecc
Confidence 3444444 467999999999999886543211222467899999999987654 34566666777899999999998
Q ss_pred CCccccccccccc
Q 033955 80 ADFTQMEVRNVFQ 92 (107)
Q Consensus 80 ~~f~~m~~LD~d~ 92 (107)
.+-..|+++=++.
T Consensus 148 ~~~~~L~~iA~~~ 160 (185)
T 3n2n_F 148 FNETQLARIADSK 160 (185)
T ss_dssp CCHHHHTTTSSSG
T ss_pred CCHHHHHHHhCCC
Confidence 8888888887554
No 2
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.17 E-value=9e-06 Score=55.83 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=61.2
Q ss_pred cccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHH--HHHHHHHHccCCCeEEEEEeecCCCcccccc
Q 033955 10 NVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQ--ETKDALVRASDLPLSILIVGVGGADFTQMEV 87 (107)
Q Consensus 10 ~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~--~t~~~Iv~As~lPiSiIiVGvG~~~f~~m~~ 87 (107)
...+.|.|++...|+.+.+...+.. ......+++++|||..++.. ...++...+....+.+..||+|+.+...|++
T Consensus 75 ~~~~~g~T~~~~al~~a~~~l~~~~--~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~~~~~~L~~ 152 (182)
T 1shu_X 75 RVSPVGETYIHEGLKLANEQIQKAG--GLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLER 152 (182)
T ss_dssp TCCCCSCCCHHHHHHHHHHHHHHHT--GGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHH
T ss_pred cCCCCCCchHHHHHHHHHHHHHhcc--CCCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCcCCHHHHHH
Confidence 3448899999999999998876542 12456799999999876643 2345666667788999999999888888888
Q ss_pred ccccc
Q 033955 88 RNVFQ 92 (107)
Q Consensus 88 LD~d~ 92 (107)
+-+..
T Consensus 153 ia~~~ 157 (182)
T 1shu_X 153 IADSK 157 (182)
T ss_dssp HSSSG
T ss_pred HhCCC
Confidence 86443
No 3
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.07 E-value=1.4e-05 Score=55.54 Aligned_cols=76 Identities=17% Similarity=0.079 Sum_probs=55.2
Q ss_pred HHHhhcccc-ccCCCChHHHHHHHHHHHHhc-ccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC
Q 033955 4 YASALNNVA-LAGPTLFGQVINTAARIAGQS-LSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 4 Y~~~l~~v~-l~gPT~fapVI~~~~~~a~~~-~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
..+.+.+++ ..|.|+...-|+.+.+..... .+.......+++++|||..+|-....++...+.+..+.+..||+|+
T Consensus 84 ~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~igvG~ 161 (178)
T 2xgg_A 84 AAHAVLDMPYKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVGH 161 (178)
T ss_dssp HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC-
T ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcCC
Confidence 345666676 579999999999998875432 1122345689999999998876555566666666789999999997
No 4
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.01 E-value=2.9e-05 Score=57.64 Aligned_cols=86 Identities=10% Similarity=0.188 Sum_probs=64.4
Q ss_pred HHhhccc----cccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCC
Q 033955 5 ASALNNV----ALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGA 80 (107)
Q Consensus 5 ~~~l~~v----~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~ 80 (107)
.+.+..+ ...|.|+...-|+.+.+..... +.......++++||||..+|..+..+++..+.+..+.+..||||+.
T Consensus 87 ~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~-~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~ 165 (266)
T 4hqo_A 87 LSKVTELRKTYTPYGTTSMTAALDEVQKHLNDR-VNREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQG 165 (266)
T ss_dssp HHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTT-CSCTTSEEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSSS
T ss_pred HHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhc-cccCCCCeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCcc
Confidence 3455555 5789999999999996665442 1223467899999999999988888888888888999999999984
Q ss_pred -Ccccccccccc
Q 033955 81 -DFTQMEVRNVF 91 (107)
Q Consensus 81 -~f~~m~~LD~d 91 (107)
+-..|+++=+.
T Consensus 166 ~~~~~L~~iA~~ 177 (266)
T 4hqo_A 166 INHQFNRLIAGC 177 (266)
T ss_dssp CCHHHHHHHHTC
T ss_pred cCHHHHHHhhCC
Confidence 34444555533
No 5
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.00 E-value=6.5e-06 Score=57.40 Aligned_cols=88 Identities=25% Similarity=0.206 Sum_probs=58.6
Q ss_pred HHHhhcccc-ccCCCChHHHHHHHHHHHH-hcccCCCCceEEEEEEeCCCcc-CHHHHHHHHHHccCCCeEEEEEeecCC
Q 033955 4 YASALNNVA-LAGPTLFGQVINTAARIAG-QSLSYDRSKYFVLLIITDGVLT-DLQETKDALVRASDLPLSILIVGVGGA 80 (107)
Q Consensus 4 Y~~~l~~v~-l~gPT~fapVI~~~~~~a~-~~~~~~~~~Y~vLlIlTDG~i~-D~~~t~~~Iv~As~lPiSiIiVGvG~~ 80 (107)
..+.+..+. +.|.|++...|+.+.+... +..+.......+++++|||..+ |.....+++..+....+.+..||+|+.
T Consensus 72 ~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~ 151 (198)
T 1n3y_A 72 PLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLA 151 (198)
T ss_dssp GGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGG
T ss_pred HHHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEcccc
Confidence 344555554 6799999999998884432 2111223457899999999887 544344455555667888999999975
Q ss_pred C-----cccccccccc
Q 033955 81 D-----FTQMEVRNVF 91 (107)
Q Consensus 81 ~-----f~~m~~LD~d 91 (107)
. ...|+++=+.
T Consensus 152 ~~~~~~~~~L~~iA~~ 167 (198)
T 1n3y_A 152 FQNRNSWKELNDIASK 167 (198)
T ss_dssp GGSSTTHHHHHHHSCS
T ss_pred ccccccHHHHHHHHcC
Confidence 3 5666666543
No 6
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=97.95 E-value=3.6e-05 Score=57.25 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=61.3
Q ss_pred cccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCC-Cccccccccc
Q 033955 12 ALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGA-DFTQMEVRNV 90 (107)
Q Consensus 12 ~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~-~f~~m~~LD~ 90 (107)
.+.|.|+...-|+.+.+...... .......++++||||..+|.....+++..+....+.+..||+|+. +-..|+.+=+
T Consensus 101 ~~~G~T~~~~aL~~a~~~l~~~~-~r~~~~~~iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA~ 179 (281)
T 4hqf_A 101 LPYGKTSLTDALLQVRKHLNDRI-NRENANQLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVG 179 (281)
T ss_dssp GGGCSCCHHHHHHHHHHHHHTSC-CCTTCEEEEEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred CCCCCccHHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhhC
Confidence 46899999999999977665431 223457899999999999887788888888788899999999984 5666666654
Q ss_pred c
Q 033955 91 F 91 (107)
Q Consensus 91 d 91 (107)
.
T Consensus 180 ~ 180 (281)
T 4hqf_A 180 C 180 (281)
T ss_dssp S
T ss_pred C
Confidence 4
No 7
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.91 E-value=7.4e-06 Score=57.28 Aligned_cols=88 Identities=19% Similarity=0.158 Sum_probs=59.5
Q ss_pred HHHhhccccc-cCCCChHHHHHHHHHHHHhc-ccCCCCceEEEEEEeCCCcc-CHHHHHHHHHHccCCCeEEEEEeecCC
Q 033955 4 YASALNNVAL-AGPTLFGQVINTAARIAGQS-LSYDRSKYFVLLIITDGVLT-DLQETKDALVRASDLPLSILIVGVGGA 80 (107)
Q Consensus 4 Y~~~l~~v~l-~gPT~fapVI~~~~~~a~~~-~~~~~~~Y~vLlIlTDG~i~-D~~~t~~~Iv~As~lPiSiIiVGvG~~ 80 (107)
..+.+.++++ .|.|+...-|+.+.+..... .+.......+++++|||..+ |.....+++..+....+.+..||+|+.
T Consensus 68 ~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG~~ 147 (194)
T 1mf7_A 68 PRSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDA 147 (194)
T ss_dssp HHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGG
T ss_pred HHHHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEeccc
Confidence 3456777774 89999999999988643321 11223457899999999887 654333444455567899999999974
Q ss_pred C-----cccccccccc
Q 033955 81 D-----FTQMEVRNVF 91 (107)
Q Consensus 81 ~-----f~~m~~LD~d 91 (107)
. ...|+++=+.
T Consensus 148 ~~~~~~~~~L~~iA~~ 163 (194)
T 1mf7_A 148 FRSEKSRQELNTIASK 163 (194)
T ss_dssp GCSHHHHHHHHHHSCS
T ss_pred ccccccHHHHHHHhCC
Confidence 3 4566666544
No 8
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.86 E-value=3.9e-05 Score=54.39 Aligned_cols=85 Identities=12% Similarity=0.095 Sum_probs=57.7
Q ss_pred HHHhhccccccCC--CChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCH--HHHHHHHHHccCCCeEEEEEeecC
Q 033955 4 YASALNNVALAGP--TLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDL--QETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 4 Y~~~l~~v~l~gP--T~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~--~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
.++.+.+++..|. |+...-|+++.+..... +.......++++||||..++. +...++...+.+..+.+..||+|+
T Consensus 78 ~~~~i~~l~~~gg~~T~~~~aL~~a~~~~~~~-~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~ 156 (202)
T 1ijb_A 78 LRRIASQVKYAGSQVASTSEVLKYTLFQIFSK-IDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGP 156 (202)
T ss_dssp HHHHHHTCCCCCBSCCCHHHHHHHHHHHTSSS-CSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEEST
T ss_pred HHHHHHhCcCCCCCcCcHHHHHHHHHHHHhcc-CCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCC
Confidence 4566777776543 99999999887543321 112345789999999987642 234444555555789999999996
Q ss_pred -CCcccccccc
Q 033955 80 -ADFTQMEVRN 89 (107)
Q Consensus 80 -~~f~~m~~LD 89 (107)
.+...|+++=
T Consensus 157 ~~~~~~L~~iA 167 (202)
T 1ijb_A 157 HANLKQIRLIE 167 (202)
T ss_dssp TSCHHHHHHHH
T ss_pred cCCHHHHHHHh
Confidence 5666676664
No 9
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.81 E-value=7.2e-05 Score=52.68 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=63.3
Q ss_pred HHHHhhccccc-----cCCCChHHHHHHHHHHHHhcccCC----CCceEEEEEEeCCCcc---CHHHHHHHHHH------
Q 033955 3 AYASALNNVAL-----AGPTLFGQVINTAARIAGQSLSYD----RSKYFVLLIITDGVLT---DLQETKDALVR------ 64 (107)
Q Consensus 3 aY~~~l~~v~l-----~gPT~fapVI~~~~~~a~~~~~~~----~~~Y~vLlIlTDG~i~---D~~~t~~~Iv~------ 64 (107)
..++.+..+.+ .|.|++..-|+.+.+......... .....+++++|||..+ |.....+.+.+
T Consensus 81 ~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~ 160 (223)
T 1q0p_A 81 WVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGK 160 (223)
T ss_dssp HHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhh
Confidence 34566777775 589999999999988766431111 2457889999999887 66666666644
Q ss_pred ----ccCCCeEEEEEeecC-CCccccccccccc
Q 033955 65 ----ASDLPLSILIVGVGG-ADFTQMEVRNVFQ 92 (107)
Q Consensus 65 ----As~lPiSiIiVGvG~-~~f~~m~~LD~d~ 92 (107)
+....+.+..||+|+ .+...|+++=+..
T Consensus 161 ~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~~~ 193 (223)
T 1q0p_A 161 DRKNPREDYLDVYVFGVGPLVNQVNINALASKK 193 (223)
T ss_dssp BTTBCCGGGEEEEEEECSSCCCHHHHHHHSCCC
T ss_pred hhhhcccCCcEEEEEEecCcCCHHHHHHHhcCC
Confidence 345678899999996 4666677765443
No 10
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.78 E-value=0.00012 Score=52.31 Aligned_cols=77 Identities=23% Similarity=0.211 Sum_probs=54.7
Q ss_pred HHHhhccccccCC--CChHHHHHHHHHHHHhc-ccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCC
Q 033955 4 YASALNNVALAGP--TLFGQVINTAARIAGQS-LSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGA 80 (107)
Q Consensus 4 Y~~~l~~v~l~gP--T~fapVI~~~~~~a~~~-~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~ 80 (107)
..+.+..+.+.|. |+...-|+++.+..... .+.......+++++|||..+|-....+++..+....+.+..||+|+.
T Consensus 85 ~~~~i~~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 85 VLVAANKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQDCEDENIQRFSIAILGH 164 (223)
T ss_dssp HHHHHTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHHHHHTTTEEEEEEEECGG
T ss_pred HHHHHHhhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEecCc
Confidence 4556667766543 99999999988753221 11223467899999999988765555666666678899999999963
No 11
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.73 E-value=0.00017 Score=50.69 Aligned_cols=76 Identities=20% Similarity=0.071 Sum_probs=54.1
Q ss_pred HHHHhhcccccc-C-CCChHHHHHHHHHHHHhc-ccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeec
Q 033955 3 AYASALNNVALA-G-PTLFGQVINTAARIAGQS-LSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVG 78 (107)
Q Consensus 3 aY~~~l~~v~l~-g-PT~fapVI~~~~~~a~~~-~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG 78 (107)
...+.+..+.+. | .|+...-|+.+.+..... .+.......+++++|||..+|.....++...+.+..+.+..||+|
T Consensus 68 ~~~~~i~~l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igvg 146 (200)
T 1v7p_C 68 EMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVL 146 (200)
T ss_dssp HHHHHHHHCCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHhhhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEec
Confidence 345667777765 4 599999999988753321 112235678999999999987655555566666678999999995
No 12
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.73 E-value=0.00016 Score=51.26 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=54.0
Q ss_pred HHHhhcccccc-C-CCChHHHHHHHHHHHHhc-ccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC
Q 033955 4 YASALNNVALA-G-PTLFGQVINTAARIAGQS-LSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 4 Y~~~l~~v~l~-g-PT~fapVI~~~~~~a~~~-~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
..+.+..+.+. | .|+...-|+++.+..... .+.......+++++|||..++-....++...+.+..+.+..||+|+
T Consensus 70 ~~~~i~~l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~igig~ 148 (213)
T 1pt6_A 70 VLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAILG 148 (213)
T ss_dssp HHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEecc
Confidence 44566677665 4 389999999888753221 1122356789999999998876555566666667789999999996
No 13
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=97.61 E-value=0.00025 Score=49.30 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=57.2
Q ss_pred HHHhhccccc-cCCCChHHHHHHHHHHHHhcc-cCCCCceEEEEEEeCCCcc-CHHHHHHHHHHccCCCeEEEEEeecC-
Q 033955 4 YASALNNVAL-AGPTLFGQVINTAARIAGQSL-SYDRSKYFVLLIITDGVLT-DLQETKDALVRASDLPLSILIVGVGG- 79 (107)
Q Consensus 4 Y~~~l~~v~l-~gPT~fapVI~~~~~~a~~~~-~~~~~~Y~vLlIlTDG~i~-D~~~t~~~Iv~As~lPiSiIiVGvG~- 79 (107)
..+.+..++. .|.|+...-|+.+.+...... +.......++++||||..+ +..+..+.+ ....+.+..||+|+
T Consensus 70 ~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~~~~~~~~~---~~~gi~v~~igvG~~ 146 (189)
T 1atz_A 70 LLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDSVDAAADAA---RSNRVTVFPIGIGDR 146 (189)
T ss_dssp HHHHHHTCCCCCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSCCHHHHHHH---HHTTEEEEEEEESSS
T ss_pred HHHHHHhCcCCCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCchHHHHHHHH---HHCCCEEEEEEcCCc
Confidence 3456667765 688999999999988766432 1122346778888888654 444444444 45688999999997
Q ss_pred CCcccccccccc
Q 033955 80 ADFTQMEVRNVF 91 (107)
Q Consensus 80 ~~f~~m~~LD~d 91 (107)
.+-..|+.+=+.
T Consensus 147 ~~~~~L~~iA~~ 158 (189)
T 1atz_A 147 YDAAQLRILAGP 158 (189)
T ss_dssp SCHHHHHHHTGG
T ss_pred CCHHHHHHHHCC
Confidence 566666666544
No 14
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=0.00016 Score=50.95 Aligned_cols=72 Identities=22% Similarity=0.256 Sum_probs=50.7
Q ss_pred HHHhhccccc----cCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecC
Q 033955 4 YASALNNVAL----AGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGG 79 (107)
Q Consensus 4 Y~~~l~~v~l----~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~ 79 (107)
.++.+..+.. .|.|++..-|+.+.+...+ ......+++++|||..++- ...+++..+.+..+.+..||+|+
T Consensus 75 ~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~----~~~~~~~ivllTDG~~~~~-~~~~~~~~~~~~~i~v~~igig~ 149 (218)
T 3ibs_A 75 AKMFLESISPSLISKQGTAIGEAINLATRSFTP----QEGVGRAIIVITDGENHEG-GAVEAAKAAAEKGIQVSVLGVGM 149 (218)
T ss_dssp HHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCS----CSSCCEEEEEEECCTTCCS-CHHHHHHHHHTTTEEEEEEEESC
T ss_pred HHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhh----CCCCCcEEEEEcCCCCCCC-cHHHHHHHHHhcCCEEEEEEecC
Confidence 3455556655 6999999988877654332 2345678999999987653 34455556667789999999997
Q ss_pred C
Q 033955 80 A 80 (107)
Q Consensus 80 ~ 80 (107)
.
T Consensus 150 ~ 150 (218)
T 3ibs_A 150 P 150 (218)
T ss_dssp T
T ss_pred C
Confidence 4
No 15
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.53 E-value=2.4e-06 Score=59.48 Aligned_cols=84 Identities=13% Similarity=0.044 Sum_probs=58.4
Q ss_pred HHHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHH-----------HHHHHHHHccCCCeEE
Q 033955 4 YASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQ-----------ETKDALVRASDLPLSI 72 (107)
Q Consensus 4 Y~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~-----------~t~~~Iv~As~lPiSi 72 (107)
..+.+..+.+.|.|++.+-|+.+.+...+.. ......+++++|||..++-. +..+....+...++.+
T Consensus 67 ~~~~i~~l~~~g~T~~~~al~~a~~~l~~~~--~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v 144 (189)
T 2x31_A 67 TKRQLQGLPGGGGTPLASGMEMAMVTAKQAR--SRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPA 144 (189)
T ss_dssp HHHHHHHCCCCBCCCCHHHHHHHHHHHHTCT--TTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCC
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHHhcc--CCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeE
Confidence 4566778889999999999999998876532 12345688999999876421 1122223334456778
Q ss_pred EEEeecCCCcccccccc
Q 033955 73 LIVGVGGADFTQMEVRN 89 (107)
Q Consensus 73 IiVGvG~~~f~~m~~LD 89 (107)
..||+|+.+...|++|=
T Consensus 145 ~~ig~g~~~~~~L~~iA 161 (189)
T 2x31_A 145 VIIDTAMRPNPALVDLA 161 (189)
T ss_dssp THHHHHHSSCSSSCSTT
T ss_pred EEEecCCCCHHHHHHHH
Confidence 88999987777777764
No 16
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.001 Score=50.71 Aligned_cols=83 Identities=7% Similarity=0.088 Sum_probs=64.9
Q ss_pred HHHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCcc-CHHHHHHHHHHccCCCeEEEEEeecC--C
Q 033955 4 YASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLT-DLQETKDALVRASDLPLSILIVGVGG--A 80 (107)
Q Consensus 4 Y~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~-D~~~t~~~Iv~As~lPiSiIiVGvG~--~ 80 (107)
-..++.++++.|-|+++.-|+.|....++.. ....-..++++|||... |.++..+++.++.+.-+++-+||+|. .
T Consensus 72 il~aL~~l~~~G~T~l~~gL~~A~~aLk~~~--~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~ 149 (268)
T 4b4t_W 72 ILAGLHDTQIEGKLHMATALQIAQLTLKHRQ--NKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQ 149 (268)
T ss_dssp HHHHHTTCCCCSCCCHHHHHHHHHHHHHTCS--CTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCCS
T ss_pred HHHHhhhcCcCCCCChHHHHHHHHHHHHhcc--cCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCcc
Confidence 4567889999999999999999998887653 33445567788888664 66778888888888888999999985 4
Q ss_pred Cccccccc
Q 033955 81 DFTQMEVR 88 (107)
Q Consensus 81 ~f~~m~~L 88 (107)
+-+.|+.|
T Consensus 150 n~~kLe~l 157 (268)
T 4b4t_W 150 NTELLDEF 157 (268)
T ss_dssp SCCHHHHH
T ss_pred chHHHHHH
Confidence 55667765
No 17
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.44 E-value=0.0012 Score=47.43 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=59.0
Q ss_pred HHHHhhccccccCCCChHHHHHHHHHHHHhcccCCCCce-EEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCCC
Q 033955 3 AYASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKY-FVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGAD 81 (107)
Q Consensus 3 aY~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y-~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~ 81 (107)
.-.+.+..+++.|.|++..-|+.+.+..++.. ..... -|+++++|+.-.|..+..+++..+.+..+.+.+||+|..+
T Consensus 70 ~i~~~L~~l~~~g~t~l~~aL~~A~~~l~~~~--~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~ 147 (192)
T 2x5n_A 70 KFLSAMHDLPVRGNAKFGDGIQIAQLALKHRE--NKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ 147 (192)
T ss_dssp HHHHHHTTCCCCSCCCHHHHHHHHHHHHHTCS--CTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC-
T ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHHhcc--ccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 44667888999999999999999988776542 11223 3555555555456777778888888889999999999865
Q ss_pred ccc-cccc
Q 033955 82 FTQ-MEVR 88 (107)
Q Consensus 82 f~~-m~~L 88 (107)
... |+.|
T Consensus 148 ~~~~l~~l 155 (192)
T 2x5n_A 148 NESALQHF 155 (192)
T ss_dssp --CHHHHH
T ss_pred ccHHHHHH
Confidence 421 5554
No 18
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=97.41 E-value=0.00064 Score=54.85 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=60.1
Q ss_pred HHHHhhccccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccC-HHHHHHHHHHccCCCeEEEEEeecC-C
Q 033955 3 AYASALNNVALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTD-LQETKDALVRASDLPLSILIVGVGG-A 80 (107)
Q Consensus 3 aY~~~l~~v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D-~~~t~~~Iv~As~lPiSiIiVGvG~-~ 80 (107)
.-++.+..+++.|.|++..-|+.+.+...+. ......+++||||..++ ..+......++....+.+..||+|. .
T Consensus 146 ~l~~~I~~L~~~GgT~l~~aL~~A~~~l~~~----~~~~~~IILLTDG~~~~~~~~~l~~~~~a~~~~i~i~tiGiG~~~ 221 (464)
T 4fx5_A 146 AAKEAVGRLHANGGTAMGRWLAQAGRIFDTA----PSAIKHAILLTDGKDESETPADLARAIQSSIGNFTADCRGIGEDW 221 (464)
T ss_dssp HHHHHHHTCCCCSCCCHHHHHHHHHHHHTTC----TTSEEEEEEEESSCCTTSCHHHHHHHHHHHTTTCEEEEEEESSSS
T ss_pred HHHHHHHcCCCCCCCcHHHHHHHHHHHHhcC----CCCCCEEEEEcCCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCcc
Confidence 3456778889999999999999988876542 23457889999998864 2334444555667788899999995 4
Q ss_pred Ccccccccc
Q 033955 81 DFTQMEVRN 89 (107)
Q Consensus 81 ~f~~m~~LD 89 (107)
+...|++|=
T Consensus 222 d~~~L~~IA 230 (464)
T 4fx5_A 222 EPKELRKIA 230 (464)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666666553
No 19
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.29 E-value=0.00026 Score=56.21 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=61.6
Q ss_pred HHHHhhcccccc-----CCCChHHHHHHHHHHHHhcccCC-------CCceEEEEEEeCCCccC---HHHHHHHHHHc--
Q 033955 3 AYASALNNVALA-----GPTLFGQVINTAARIAGQSLSYD-------RSKYFVLLIITDGVLTD---LQETKDALVRA-- 65 (107)
Q Consensus 3 aY~~~l~~v~l~-----gPT~fapVI~~~~~~a~~~~~~~-------~~~Y~vLlIlTDG~i~D---~~~t~~~Iv~A-- 65 (107)
+..+.+.+++.. |.|+...-|+.+.+......... .....++++||||..++ ..+..+.+.+.
T Consensus 75 ~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~ 154 (509)
T 2odp_A 75 EVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILN 154 (509)
T ss_dssp HHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhh
Confidence 345667777776 88999999999988764421111 12457899999997754 45555555532
Q ss_pred ----cCCCeEEEEEeecC--CCccccccccccc
Q 033955 66 ----SDLPLSILIVGVGG--ADFTQMEVRNVFQ 92 (107)
Q Consensus 66 ----s~lPiSiIiVGvG~--~~f~~m~~LD~d~ 92 (107)
.+..+.+..||+|+ .+...|+++=+..
T Consensus 155 ~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~ 187 (509)
T 2odp_A 155 INQKRNDYLDIYAIGVGKLDVDWRELNELGSKK 187 (509)
T ss_dssp CCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCC
T ss_pred ccccccCceEEEEEEcCCCcccHHHHHhhccCC
Confidence 25678888999998 5777777776443
No 20
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.03 E-value=0.0019 Score=53.31 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=61.5
Q ss_pred HHHhhcccc-----ccCCCChHHHHHHHHHHHHhcc----cCCCCceEEEEEEeCCCcc---CHHHHHHHHH--------
Q 033955 4 YASALNNVA-----LAGPTLFGQVINTAARIAGQSL----SYDRSKYFVLLIITDGVLT---DLQETKDALV-------- 63 (107)
Q Consensus 4 Y~~~l~~v~-----l~gPT~fapVI~~~~~~a~~~~----~~~~~~Y~vLlIlTDG~i~---D~~~t~~~Iv-------- 63 (107)
-.+++.+++ ..|.|+...-|+++.+...... ........++++||||..+ |..+..+.+.
T Consensus 310 ~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~ 389 (741)
T 3hrz_D 310 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKD 389 (741)
T ss_dssp HHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSC
T ss_pred HHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccc
Confidence 456777777 6899999999999988874211 1112356799999999664 5566666555
Q ss_pred --HccCCCeEEEEEeecC-CCcccccccccc
Q 033955 64 --RASDLPLSILIVGVGG-ADFTQMEVRNVF 91 (107)
Q Consensus 64 --~As~lPiSiIiVGvG~-~~f~~m~~LD~d 91 (107)
.+.+..+.+..||||+ .+...|++|=..
T Consensus 390 a~~~~~~gi~i~~igvG~~~~~~~L~~ia~~ 420 (741)
T 3hrz_D 390 RKNPREDYLDVYVFGVGPLVNQVNINALASK 420 (741)
T ss_dssp TTCCCGGGEEEEEEECSSSCCHHHHHHHSCC
T ss_pred cccccccCeeEEEEeCCCcCCHHHHHHHhcC
Confidence 3445678999999997 566666666543
No 21
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=96.92 E-value=0.00062 Score=47.97 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=52.8
Q ss_pred HHHhhccccccCC--CChHHHHHHHHHHHHhc-ccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeec-C
Q 033955 4 YASALNNVALAGP--TLFGQVINTAARIAGQS-LSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVG-G 79 (107)
Q Consensus 4 Y~~~l~~v~l~gP--T~fapVI~~~~~~a~~~-~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG-~ 79 (107)
..+.+.+++..|. |+...-|+.+.+..... .+.......++++||||...|.-+ ++ ...+.+.-||+| +
T Consensus 86 ~~~~i~~l~~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~------~~-~~~v~v~~iGiG~~ 158 (199)
T 3zqk_A 86 ILQRLREIRYQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK------RL-PGDIQVVPIGVGPN 158 (199)
T ss_dssp HHHHHHHCCCCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC------CC-CTTEEEEEEEESTT
T ss_pred HHHHHHhCcCCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH------HH-hCCCEEEEEEcCCC
Confidence 3556667776553 99888888776542221 112234567999999998765321 11 257889999999 5
Q ss_pred CCccccccccc
Q 033955 80 ADFTQMEVRNV 90 (107)
Q Consensus 80 ~~f~~m~~LD~ 90 (107)
.+...|+++=+
T Consensus 159 ~~~~~L~~iA~ 169 (199)
T 3zqk_A 159 ANVQELERIGW 169 (199)
T ss_dssp CCHHHHHHHHT
T ss_pred CCHHHHHHHhC
Confidence 67777777764
No 22
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=96.81 E-value=0.0043 Score=48.84 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=58.4
Q ss_pred HHhhccccc-----cCCCChHHHHHHHHHHHHhccc----CCCCceEEEEEEeCCCcc---CHHHHHHHHHHc-------
Q 033955 5 ASALNNVAL-----AGPTLFGQVINTAARIAGQSLS----YDRSKYFVLLIITDGVLT---DLQETKDALVRA------- 65 (107)
Q Consensus 5 ~~~l~~v~l-----~gPT~fapVI~~~~~~a~~~~~----~~~~~Y~vLlIlTDG~i~---D~~~t~~~Iv~A------- 65 (107)
.+.+..+.+ .|.|+...-|+.+.+....... .......+++++|||..+ |..+..+.+.+.
T Consensus 69 ~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~ 148 (497)
T 1rrk_A 69 TKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDR 148 (497)
T ss_dssp HHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC
T ss_pred HHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhccc
Confidence 455666663 5799999999999887642210 012356799999999776 566666666554
Q ss_pred ---cCCCeEEEEEeecC-CCcccccccccc
Q 033955 66 ---SDLPLSILIVGVGG-ADFTQMEVRNVF 91 (107)
Q Consensus 66 ---s~lPiSiIiVGvG~-~~f~~m~~LD~d 91 (107)
.+..+.+..||+|+ .+...|++|=+.
T Consensus 149 ~~~~~~~i~v~~igvG~~~~~~~L~~iA~~ 178 (497)
T 1rrk_A 149 KNPREDYLDVYVFGVGPLVNQVNINALASK 178 (497)
T ss_dssp -CCCGGGEEEEEEECSSSCCHHHHHHHSCC
T ss_pred ccchhcCeeEEEecCCCccCHHHHHHHhcC
Confidence 12378888999997 566667666543
No 23
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=96.79 E-value=0.0025 Score=44.10 Aligned_cols=80 Identities=24% Similarity=0.110 Sum_probs=51.1
Q ss_pred Hhhccccc-cCCCChHHHHHHHHHHHHhc-ccCCCCceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCCCc-
Q 033955 6 SALNNVAL-AGPTLFGQVINTAARIAGQS-LSYDRSKYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGADF- 82 (107)
Q Consensus 6 ~~l~~v~l-~gPT~fapVI~~~~~~a~~~-~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~f- 82 (107)
+.+..+.. .|.|+...-|+.+.+..... .+.......+++++|||..+|-... +....+.+.-||+|+..-
T Consensus 67 ~~~~~i~~~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~------~~~~~i~i~~igvG~~~~~ 140 (179)
T 1mjn_A 67 ALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNI------DAAKDIIRYIIGIGKHFQT 140 (179)
T ss_dssp HHHTTCCCCCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCC------GGGTTSEEEEEEESGGGCS
T ss_pred HHHHhcccCCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcch------HHHCCCEEEEEEccccccc
Confidence 44555543 68999999999887643321 1122346789999999988764321 123457778899997432
Q ss_pred ----ccccccccc
Q 033955 83 ----TQMEVRNVF 91 (107)
Q Consensus 83 ----~~m~~LD~d 91 (107)
..|+++=+.
T Consensus 141 ~~~~~~L~~iA~~ 153 (179)
T 1mjn_A 141 KESQETLHKFASK 153 (179)
T ss_dssp HHHHHTTGGGSCS
T ss_pred cccHHHHHHHhCC
Confidence 566666444
No 24
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=96.53 E-value=0.0016 Score=57.62 Aligned_cols=86 Identities=24% Similarity=0.246 Sum_probs=59.3
Q ss_pred Hhhccc-cccCCCChHHHHHHHHHHHHhc-ccCCCCceEEEEEEeCCCc-cCHHHHHHHHHHccCCCeEEEEEeecCC--
Q 033955 6 SALNNV-ALAGPTLFGQVINTAARIAGQS-LSYDRSKYFVLLIITDGVL-TDLQETKDALVRASDLPLSILIVGVGGA-- 80 (107)
Q Consensus 6 ~~l~~v-~l~gPT~fapVI~~~~~~a~~~-~~~~~~~Y~vLlIlTDG~i-~D~~~t~~~Iv~As~lPiSiIiVGvG~~-- 80 (107)
+++..+ ++.|.|+.+.-|+++.+..... .+.......++++||||.. +|.....+++.++.+..+.+.-||||+.
T Consensus 195 ~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~~GI~i~aIGVG~~~~ 274 (1095)
T 3k6s_A 195 SLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQ 274 (1095)
T ss_dssp GGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHHHCEEECCEEBSSGGG
T ss_pred HHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHHCCCEEEEEecccccc
Confidence 445555 5578999999998887654422 1122345789999999988 5655555555555566888999999986
Q ss_pred ---Ccccccccccc
Q 033955 81 ---DFTQMEVRNVF 91 (107)
Q Consensus 81 ---~f~~m~~LD~d 91 (107)
+.+.|+++=++
T Consensus 275 ~~~d~~eL~~IAs~ 288 (1095)
T 3k6s_A 275 NRNSWKELNDIASK 288 (1095)
T ss_dssp STTSSHHHHTTSCS
T ss_pred cccCHHHHHHHHcC
Confidence 66667666543
No 25
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=95.53 E-value=0.045 Score=44.50 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=46.1
Q ss_pred ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccC----HHHHHHHHHHccCCCeEEEEEeecCCCcc
Q 033955 13 LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTD----LQETKDALVRASDLPLSILIVGVGGADFT 83 (107)
Q Consensus 13 l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D----~~~t~~~Iv~As~lPiSiIiVGvG~~~f~ 83 (107)
+.|.|+++..|..+.+. ....-+++++|||..++ ..+..+.+.+..+.++.++.||+|.....
T Consensus 441 ~~GgT~i~~aL~~a~~~--------~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~~~v~l~~igig~~~~~ 507 (538)
T 1yvr_A 441 TMGSTDCALPMLWAQKT--------NTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNGFS 507 (538)
T ss_dssp CCSCCCTTHHHHHHHHT--------TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSSEE
T ss_pred CCCCCcHHHHHHHHHhc--------cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEEecCCCCc
Confidence 57899999988877654 12346899999997643 44555666666567888899999986654
No 26
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=94.14 E-value=0.16 Score=41.42 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=44.9
Q ss_pred ccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCcc----CHHHHHHHHHHccCCCeEEEEEeecCCCcc
Q 033955 13 LAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLT----DLQETKDALVRASDLPLSILIVGVGGADFT 83 (107)
Q Consensus 13 l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~----D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~ 83 (107)
+.|.|+++..|+.+.+. ...+-+++++|||+.. +..+..+...+..+.+..+++||+|+....
T Consensus 437 ~~ggTdi~~~l~~a~~~--------~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i~l~~~~~~ 503 (535)
T 2nvo_A 437 SFGGTDCAQPILWAAQE--------RLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTATEFS 503 (535)
T ss_dssp SBCCCCTTHHHHHHHHT--------TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCSCCC
T ss_pred CCCCccHHHHHHHHHHh--------cCCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEEeccCCCcc
Confidence 36999999998766322 1346789999999654 344555555555567899999999986443
No 27
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=93.69 E-value=0.21 Score=40.92 Aligned_cols=69 Identities=7% Similarity=-0.042 Sum_probs=49.3
Q ss_pred cccc-CCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCcc-CHHHHHHHHHHccCCCeEEE-EEeecC
Q 033955 11 VALA-GPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLT-DLQETKDALVRASDLPLSIL-IVGVGG 79 (107)
Q Consensus 11 v~l~-gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~-D~~~t~~~Iv~As~lPiSiI-iVGvG~ 79 (107)
+++. +.|.+...|.-+.+...+...+.+..--.++++|||+-. +..+..+++..+.+..+.+. +||+|.
T Consensus 98 l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l~~~gI~i~~vig~g~ 169 (565)
T 1jey_B 98 IQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSL 169 (565)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESSCC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEeccCC
Confidence 5554 789999999998887765421111123689999999543 44456677777888899999 889885
No 28
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=92.24 E-value=0.089 Score=39.56 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=27.1
Q ss_pred ceEEEEEEeCCCccCHHHHHHHHHHccCCCeEEEEEeecCC
Q 033955 40 KYFVLLIITDGVLTDLQETKDALVRASDLPLSILIVGVGGA 80 (107)
Q Consensus 40 ~Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~ 80 (107)
.--++++||||+-+--....++-..|....+-|-.||+|+.
T Consensus 9 ~~k~iillTDG~~~~g~~p~~aa~~a~~~gi~v~tIGig~~ 49 (242)
T 3rag_A 9 TIRQILVITDGCSNIGPDPVEAARRAHRHGIVVNVIGIVGR 49 (242)
T ss_dssp CEEEEEEEESSCCCSSSCHHHHHHHHHHTTCEEEEEEECCS
T ss_pred CccEEEEEccCCCCCCCCHHHHHHHHHHCCCEEEEEEecCC
Confidence 35688999999764111223333445666888999999864
No 29
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=86.56 E-value=2.8 Score=34.58 Aligned_cols=68 Identities=7% Similarity=0.038 Sum_probs=48.6
Q ss_pred cCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCcc-CH-----HHHHHHHHHccCCCeEEEEEeecCC-Ccc
Q 033955 14 AGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLT-DL-----QETKDALVRASDLPLSILIVGVGGA-DFT 83 (107)
Q Consensus 14 ~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~-D~-----~~t~~~Iv~As~lPiSiIiVGvG~~-~f~ 83 (107)
.++|.+...|.-+.++-.+.. ....--.+++||||+-. +. .+...+...+....+.|..||+|.. +|+
T Consensus 138 ~~~t~l~daL~~a~~~f~~~~--~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~~~fd 212 (609)
T 1jey_A 138 GSDYSLSEVLWVCANLFSDVQ--FKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFD 212 (609)
T ss_dssp SCCCCHHHHHHHHHHHHHTCS--SCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCC
T ss_pred CCCCCHHHHHHHHHHHHHhhc--hhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHHhcCcEEEEEecCCCCccc
Confidence 357999999998888766431 11124689999999652 21 3566777778889999999999964 354
No 30
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=58.89 E-value=16 Score=31.87 Aligned_cols=42 Identities=29% Similarity=0.267 Sum_probs=30.5
Q ss_pred ccccCCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccC
Q 033955 11 VALAGPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTD 54 (107)
Q Consensus 11 v~l~gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D 54 (107)
+.+.|.|+...-|..+++...+.. ....--++++||||..++
T Consensus 351 l~~~GGT~i~~AL~~A~~lL~~~~--~~~~~kvIILLTDG~pt~ 392 (893)
T 2ww8_A 351 MYQFGATFTQKALMKADEILTQQA--RQNSQKVIFHITDGVPTM 392 (893)
T ss_dssp GGGGCSCCHHHHHHHHHHHHHHHS--CSSSEEEEEEEESSCCSE
T ss_pred cccCCCChHHHHHHHHHHHHHhhc--ccCCCeEEEEEcCCCCCc
Confidence 345789999999999988775321 112345889999998864
No 31
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=44.69 E-value=14 Score=27.84 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=38.6
Q ss_pred CceEEEEEEeCC-CccCHHHHHHHHHHccCCCeEEEEEeecCCCcccccc
Q 033955 39 SKYFVLLIITDG-VLTDLQETKDALVRASDLPLSILIVGVGGADFTQMEV 87 (107)
Q Consensus 39 ~~Y~vLlIlTDG-~i~D~~~t~~~Iv~As~lPiSiIiVGvG~~~f~~m~~ 87 (107)
..|=-++.+|+| ...|.++..+.|.+-+..|+|+- +|.|..++.....
T Consensus 52 ~R~D~~ia~tngi~~~~h~~i~~~i~~~~Pv~vs~~-~g~~~tP~~A~~~ 100 (268)
T 2qv6_A 52 TRFDNLIAITNGIDLITHKRIQESIRNRYPFTVSMV-IASAETPYEAQKL 100 (268)
T ss_dssp TTSSEEEEECTTCCHHHHHHHHHHHHHHSSSCEEEE-EEEESSHHHHHHH
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHhhcCCceEEEE-EEecCCHHHHHHH
Confidence 346678899999 66888999999999999999984 5888877665543
No 32
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=39.66 E-value=3.5 Score=23.93 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=16.8
Q ss_pred CCCccccccccccccceeecc
Q 033955 79 GADFTQMEVRNVFQLEYLLTS 99 (107)
Q Consensus 79 ~~~f~~m~~LD~d~~~~~~~~ 99 (107)
++||++++.|+-++++...++
T Consensus 1 ~gdf~fLk~ls~eEL~~rl~~ 21 (51)
T 2jo8_A 1 GSDYEFLKSWTVEDLQKRLLA 21 (51)
T ss_dssp CCCCGGGGGSCHHHHHHHHHH
T ss_pred CCccHHHHhCCHHHHHHHHHH
Confidence 358999999999888776554
No 33
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=36.08 E-value=24 Score=27.53 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=28.3
Q ss_pred EeCCCccCHHHHHHHHHHcc-------CCCeEE-EEEeecCC
Q 033955 47 ITDGVLTDLQETKDALVRAS-------DLPLSI-LIVGVGGA 80 (107)
Q Consensus 47 lTDG~i~D~~~t~~~Iv~As-------~lPiSi-IiVGvG~~ 80 (107)
+-||.|.|.+++.++|.+|- ...+.= +.||+...
T Consensus 45 v~~G~I~di~~~~~~I~~av~~ae~~~g~~i~~~v~v~i~g~ 86 (419)
T 4a2a_A 45 LDEGEIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSV 86 (419)
T ss_dssp EETTEESBHHHHHHHHHHHHHHHHHHHTSCCCSEEEEEECCT
T ss_pred eeCCEEEcHHHHHHHHHHHHHHHHHHcCCCcCceEEEEEcCC
Confidence 77999999999888887773 467888 99999887
No 34
>3rzn_A GLTP, glycolipid transfer protein; GLTP-fold, lipid transport; HET: CIS; 1.10A {Homo sapiens} PDB: 1sx6_A* 2euk_A* 2eum_A* 2evd_A* 2evl_A* 2evs_A* 1swx_A 3rwv_A* 3s0k_A* 3s0i_A* 2evt_A* 1wbe_A* 3ric_A* 1tfj_A* 2bv7_A*
Probab=33.40 E-value=26 Score=25.13 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=25.0
Q ss_pred ChHHHHhhccccccCCCChHHHHHHHHHHHH
Q 033955 1 MAAYASALNNVALAGPTLFGQVINTAARIAG 31 (107)
Q Consensus 1 leaY~~~l~~v~l~gPT~fapVI~~~~~~a~ 31 (107)
|+|++...+-....|+|-|+||-+++.....
T Consensus 24 L~a~~~l~~~~d~LG~~~F~~v~~D~~~nI~ 54 (209)
T 3rzn_A 24 LEAVSHLPPFFDCLGSPVFTPIKADISGNIT 54 (209)
T ss_dssp HHHHTTSGGGGGGSSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 4678888888888999999999888854443
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=31.51 E-value=28 Score=20.51 Aligned_cols=30 Identities=10% Similarity=0.038 Sum_probs=24.3
Q ss_pred hHHHHhhcccccc--CCCChHHHHHHHHHHHH
Q 033955 2 AAYASALNNVALA--GPTLFGQVINTAARIAG 31 (107)
Q Consensus 2 eaY~~~l~~v~l~--gPT~fapVI~~~~~~a~ 31 (107)
++||+.+....|. |++.++--|+.|-+.-.
T Consensus 26 ~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 26 NRFNYLFEVNDKEKGGSFYLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999997 88888888888766544
No 36
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=30.50 E-value=97 Score=22.21 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCCccC-HHHHHHHHHHccC--CCeEEEEEeecCCCc
Q 033955 49 DGVLTD-LQETKDALVRASD--LPLSILIVGVGGADF 82 (107)
Q Consensus 49 DG~i~D-~~~t~~~Iv~As~--lPiSiIiVGvG~~~f 82 (107)
+|++.| ++...+.|..... -.+..-++|.|+..|
T Consensus 99 ~Ge~Pdna~~F~~~L~~~~~~l~~~~~aVfGlGdssY 135 (219)
T 3hr4_A 99 NGDCPGNGEKLKKSLFMLKELNNKFRYAVFGLGSSMY 135 (219)
T ss_dssp TTBCCGGGHHHHHHHHHCCCCSSCCEEEEEEEECTTS
T ss_pred CCcCCHHHHHHHHHHHhcchhhcCCEEEEEeCCCcch
Confidence 566654 7778888876531 346677789999887
No 37
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=28.64 E-value=34 Score=22.38 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=32.1
Q ss_pred HHHHH-HHHHHccCCCe--------EEEEEeecCCCccccccccccccceeeccceeeee
Q 033955 55 LQETK-DALVRASDLPL--------SILIVGVGGADFTQMEVRNVFQLEYLLTSIELLFS 105 (107)
Q Consensus 55 ~~~t~-~~Iv~As~lPi--------SiIiVGvG~~~f~~m~~LD~d~~~~~~~~~~~~~~ 105 (107)
..+.+ +...+|.++|+ |.+|.||.. +...|+|. |+.|+|.+ ..+||.
T Consensus 42 l~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~--~~e~Eel~-DEsrrL~d-v~pf~p 97 (108)
T 2v1y_A 42 LITIKHELFKEARKYPLHQLLQDESSYIFVSVTQ--EAEREEFF-DETRRLCD-LRLFQP 97 (108)
T ss_dssp HHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBT--TSCEEEEC-CTTSBGGG-SCBSSS
T ss_pred HHHHHHHHHHHHHhCchHHHhCCccceEEEEecC--CceEEEeE-cCceEEEe-ccccce
Confidence 34444 46677788765 689999987 68888998 77777654 334443
No 38
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=27.28 E-value=38 Score=27.38 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=28.4
Q ss_pred eEEEEEEeCCCccCHHHHHHHHHHccCCCeEEE
Q 033955 41 YFVLLIITDGVLTDLQETKDALVRASDLPLSIL 73 (107)
Q Consensus 41 Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiI 73 (107)
-.|.|-++-++...+..+++.+.++.+.|+|+-
T Consensus 129 D~ial~~~s~dpe~~~~vVk~V~e~~dvPL~ID 161 (446)
T 4djd_C 129 QAIAIRHDADDPAAFKAAVASVAAATQLNLVLM 161 (446)
T ss_dssp CEEEEECCSSSTHHHHHHHHHHHTTCCSEEEEE
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 467777888888899999999999999999884
No 39
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural genomics, joint center for structural genomics; HET: MSE FMN; 1.86A {Parabacteroides distasonis}
Probab=26.53 E-value=1.4e+02 Score=19.55 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHc-------cCCCeEEEEEeecC
Q 033955 15 GPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRA-------SDLPLSILIVGVGG 79 (107)
Q Consensus 15 gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~A-------s~lPiSiIiVGvG~ 79 (107)
...-=...|+.+.+.|..+.+..+.++.-+++++|. +.++.|.++ ...|..|++++--+
T Consensus 23 ~~~v~~e~l~~il~aa~~APS~~n~qpw~~~vv~~~------~~~~~l~~~~~~~~~~~~Ap~~iv~~~~~~ 88 (172)
T 3m5k_A 23 DRPVEKEKIDKLIRAGMAAPSSRDRRPWEFIIVTDR------KALDTMAEGLPFARMLKETRQAIVVCGDTI 88 (172)
T ss_dssp SSCCCHHHHHHHHHHHHTSCCGGGCCCEEEEEECCH------HHHHHHHHHCTTCGGGGGCSEEEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHhCcCcCCCCCeEEEEEcCH------HHHHHHHHhcccchhHhcCCEEEEEEecCc
Confidence 333445677888888776533233444445566653 344555443 35788888876543
No 40
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*
Probab=23.68 E-value=49 Score=26.52 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=27.7
Q ss_pred eEEEEEEeCCCccCHHHHHHHHHHccCCCeEEE
Q 033955 41 YFVLLIITDGVLTDLQETKDALVRASDLPLSIL 73 (107)
Q Consensus 41 Y~vLlIlTDG~i~D~~~t~~~Iv~As~lPiSiI 73 (107)
-.|.|-+.+++...++.+++.+.++.+.|+||-
T Consensus 129 D~I~l~~~~~dpe~~~~~Vk~V~e~~dvPlsID 161 (445)
T 2h9a_A 129 NLVALKGSSQDAATFAKAVATAREVTDLPFILI 161 (445)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 356666777888889999999999999999885
No 41
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.44 E-value=1.6e+02 Score=19.29 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=33.4
Q ss_pred CCCChHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCccCHHHHHHHHHHc-------cCCCeEEEEEeecC
Q 033955 15 GPTLFGQVINTAARIAGQSLSYDRSKYFVLLIITDGVLTDLQETKDALVRA-------SDLPLSILIVGVGG 79 (107)
Q Consensus 15 gPT~fapVI~~~~~~a~~~~~~~~~~Y~vLlIlTDG~i~D~~~t~~~Iv~A-------s~lPiSiIiVGvG~ 79 (107)
...-=...|+.+.+.|..+-+..+.++.-+++++|. +.++.|.++ ...|..|++++--+
T Consensus 27 ~~~v~~e~l~~il~aa~~APs~~n~qp~~~~vv~~~------~~~~~l~~~~~~~~~~~~Ap~~iv~~~~~~ 92 (175)
T 3kwk_A 27 NKGVEKEKIDLMLRAGMSAPSGKDVRPWEFVVVSDR------AKLDSMAAALPYAKMLTQARNAIIVCGDSA 92 (175)
T ss_dssp SCCCCHHHHHHHHHHHTTSCCGGGCCCEEEEEECCH------HHHHHHHHHCTTCGGGGGCSEEEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHCcCccCCCCeEEEEEeCH------HHHHHHHHhcccchhhhcCCEEEEEEEeCc
Confidence 344445678888888776433233444445556653 344445443 24788888776543
No 42
>2jqm_A Envelope protein E; yellow fever envelope protein domain III, asibi strain, structure, transferase; NMR {Yellow fever virus} PDB: 2jv6_A
Probab=23.25 E-value=34 Score=22.70 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=11.3
Q ss_pred CCeEEEEEeecCCC
Q 033955 68 LPLSILIVGVGGAD 81 (107)
Q Consensus 68 lPiSiIiVGvG~~~ 81 (107)
+.-|+|+||.|+..
T Consensus 85 fGdSyI~vG~g~~~ 98 (112)
T 2jqm_A 85 FGDSYIIVGTGDSR 98 (112)
T ss_dssp SEEEEEEECSSTTC
T ss_pred CCCcEEEEccCCCc
Confidence 45699999999854
No 43
>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET: MLY; 1.90A {Podospora anserina}
Probab=23.17 E-value=30 Score=24.96 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=25.8
Q ss_pred ChHHHHhhccccccCCCChHHHHHHHHHHHH
Q 033955 1 MAAYASALNNVALAGPTLFGQVINTAARIAG 31 (107)
Q Consensus 1 leaY~~~l~~v~l~gPT~fapVI~~~~~~a~ 31 (107)
|+|++..++-....|+|-|+||-+++.....
T Consensus 43 L~a~~~l~~~fd~LG~~~F~~v~~D~~~nI~ 73 (209)
T 3kv0_A 43 LEAAESLTTMFDVLGSIAFSPVXTDMLGNVE 73 (209)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhHH
Confidence 4788888888889999999999999865544
No 44
>1t0f_C Protein E, transposon TN7 transposition protein TNSC; protein-protein complex, mixed alpha-beta, DNA binding protein; 1.85A {Escherichia coli}
Probab=22.01 E-value=15 Score=21.35 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=11.7
Q ss_pred cccccccceeeccc
Q 033955 87 VRNVFQLEYLLTSI 100 (107)
Q Consensus 87 ~LD~d~~~~~~~~~ 100 (107)
.||.++||++++..
T Consensus 14 tL~~~DLR~iySq~ 27 (54)
T 1t0f_C 14 SLPDTDLRYIYSQR 27 (54)
T ss_dssp GSCTTCHHHHHHTS
T ss_pred cCCHhHhHHHHhcc
Confidence 49999999999654
No 45
>3uzv_A Envelope protein; dengue antibody neutralization, immune system; 2.10A {Dengue virus 2}
Probab=21.07 E-value=41 Score=22.39 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.0
Q ss_pred CCeEEEEEeecCCC
Q 033955 68 LPLSILIVGVGGAD 81 (107)
Q Consensus 68 lPiSiIiVGvG~~~ 81 (107)
+.-|+|+||.|+..
T Consensus 79 fGdS~I~VG~g~~~ 92 (114)
T 3uzv_A 79 FGDSYIIIGVEPGQ 92 (114)
T ss_dssp SEEEEEEESCSSSC
T ss_pred CCceEEEEccCCCc
Confidence 44689999999854
Done!