BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033956
         (107 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase
 pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase
 pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase In Complex With Digalaturonic Acid
 pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase In Complex With Digalaturonic Acid
          Length = 608

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 8   PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVV 49
           P  +   N  NH  + + +I + +   NG    F ++ NV+V
Sbjct: 352 PAFHGIMNLENHNVVANGLIHQTYDANNGDGIEFGNSQNVMV 393


>pdb|1MUK|A Chain A, Reovirus Lambda3 Native Structure
 pdb|1MWH|A Chain A, Reovirus Polymerase Lambda3 Bound To Mrna Cap Analog
 pdb|1N1H|A Chain A, Initiation Complex Of Polymerase Lambda3 From Reovirus
 pdb|1N35|A Chain A, Lambda3 Elongation Complex With Four Phosphodiester Bond
           Formed
 pdb|1N38|A Chain A, Reovirus Polymerase Lambda3 Elongation Complex With One
           Phosphodiester Bond Formed
 pdb|1UON|A Chain A, Reovirus Polymerase Lambda-3 Localized By Electron
           Cryomicroscopy Of Virions At 7.6-a Resolution
          Length = 1267

 Score = 27.3 bits (59), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 74  EVLGWKYERAFEASQKYKEGKFIF 97
           E  GWKY+ A++ + +Y +  FIF
Sbjct: 765 EEFGWKYDIAYDGTAEYLKLYFIF 788


>pdb|2CSE|1 Chain 1, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
          Length = 1267

 Score = 27.3 bits (59), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 74  EVLGWKYERAFEASQKYKEGKFIF 97
           E  GWKY+ A++ + +Y +  FIF
Sbjct: 765 EEFGWKYDIAYDGTAEYLKLYFIF 788


>pdb|2HWJ|A Chain A, Crystal Structure Of Protein Atu1540 From Agrobacterium
          Tumefaciens
 pdb|2HWJ|B Chain B, Crystal Structure Of Protein Atu1540 From Agrobacterium
          Tumefaciens
 pdb|2HWJ|C Chain C, Crystal Structure Of Protein Atu1540 From Agrobacterium
          Tumefaciens
 pdb|2HWJ|D Chain D, Crystal Structure Of Protein Atu1540 From Agrobacterium
          Tumefaciens
 pdb|2HWJ|E Chain E, Crystal Structure Of Protein Atu1540 From Agrobacterium
          Tumefaciens
 pdb|2HWJ|F Chain F, Crystal Structure Of Protein Atu1540 From Agrobacterium
          Tumefaciens
          Length = 205

 Score = 26.6 bits (57), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 34 RNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVL 76
          ++G  FL +H + VV GPK+  +L+   H V  +       VL
Sbjct: 42 KDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHVL 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,125,957
Number of Sequences: 62578
Number of extensions: 110797
Number of successful extensions: 297
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 4
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)