BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033957
         (107 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
           4-Alpha-Glucanotransferase
 pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
           4-Alpha-Glucanotransferase
 pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
           GlucanotransferaseACARBOSE COMPLEX
 pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
           GlucanotransferaseACARBOSE COMPLEX
          Length = 441

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 60  YDDPELLQFHKRSTVHLISLPKDFNKFKSM-HMYDIVVKN 98
           YD+P++    KR  +HL+ +  D  +F +  HM D + +N
Sbjct: 159 YDNPQVFDEMKRLVLHLLDMGVDGFRFDAAKHMRDTIEQN 198


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,287,931
Number of Sequences: 62578
Number of extensions: 116182
Number of successful extensions: 259
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 3
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)