Query 033957
Match_columns 107
No_of_seqs 54 out of 56
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 13:42:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dfm_A Endonuclease bglii; res 66.4 10 0.00035 29.7 5.2 40 45-104 55-94 (223)
2 1whz_A Hypothetical protein; a 64.9 7.4 0.00025 23.6 3.4 18 42-59 5-22 (70)
3 3vxv_A Methyl-CPG-binding doma 63.3 11 0.00036 24.1 4.1 29 27-55 24-52 (69)
4 3c2i_A Methyl-CPG-binding prot 61.9 9.8 0.00033 26.1 3.9 29 27-55 42-70 (97)
5 3d6w_A Methyl-accepting/DNA re 60.6 13 0.00046 23.3 4.2 35 29-72 29-65 (111)
6 2ky8_A Methyl-CPG-binding doma 60.4 13 0.00046 23.8 4.2 27 27-53 31-57 (72)
7 1d9n_A Methyl-CPG-binding prot 54.0 12 0.0004 24.4 3.1 26 27-52 29-54 (75)
8 2lqo_A Putative glutaredoxin R 53.1 8.6 0.00029 24.7 2.3 23 33-55 59-83 (92)
9 1jb7_B Telomere-binding protei 48.3 1.1 3.7E-05 35.5 -3.1 22 34-55 99-120 (260)
10 4g4k_A Accessory gene regulato 44.9 17 0.00057 22.8 2.7 33 29-72 34-68 (103)
11 1ub1_A MECP2, attachment regio 44.0 29 0.00099 25.1 4.1 29 27-55 56-84 (133)
12 3fpn_B Geobacillus stearotherm 43.3 25 0.00086 23.3 3.5 46 32-78 14-60 (106)
13 2i0q_B Telomere-binding protei 40.7 1.7 5.9E-05 35.9 -3.1 22 34-55 99-120 (385)
14 3zqs_A E3 ubiquitin-protein li 39.7 12 0.00042 28.1 1.6 40 44-83 3-50 (186)
15 2jo8_A Serine/threonine-protei 30.3 20 0.00069 22.3 1.3 12 43-54 11-22 (51)
16 4de9_A Putative transcriptiona 30.0 26 0.0009 27.1 2.1 19 65-83 57-76 (286)
17 3ih5_A Electron transfer flavo 30.0 22 0.00074 26.1 1.6 13 1-13 3-18 (217)
18 3l4h_A E3 ubiquitin-protein li 27.5 2.3 7.8E-05 29.9 -3.9 32 53-84 47-78 (109)
19 3nxh_A Transcriptional regulat 27.3 31 0.0011 26.4 2.1 18 66-83 31-49 (269)
20 2avr_X Adhesion A; antiparalle 27.3 14 0.00048 26.4 0.1 20 35-54 2-21 (119)
21 3qfi_A Transcriptional regulat 26.2 33 0.0011 27.0 2.1 19 65-83 47-66 (301)
22 3u9h_A Tankyrase-2; protein-li 26.0 14 0.00049 27.9 0.0 18 69-86 6-23 (240)
23 3okz_A Putative uncharacterize 25.6 32 0.0011 27.0 2.0 19 65-83 47-66 (306)
24 1nvp_C Transcription initiatio 25.4 38 0.0013 22.5 2.0 26 3-40 47-74 (76)
25 2xxp_A CPS2A; replication, pep 25.0 35 0.0012 27.4 2.1 19 65-83 154-173 (398)
26 3owq_A LIN1025 protein; struct 24.9 36 0.0012 26.9 2.1 19 65-83 96-115 (321)
27 3ib6_A Uncharacterized protein 24.0 29 0.001 23.0 1.3 31 31-61 51-81 (189)
28 1nh2_C Transcription initiatio 23.8 43 0.0015 22.4 2.0 26 3-40 49-76 (79)
29 3eab_G CHMP1B; spastin, MIT, E 21.7 38 0.0013 20.3 1.3 11 44-54 38-48 (50)
30 2ggv_A NS2B, non-structural pr 21.6 35 0.0012 21.4 1.2 21 8-28 34-55 (56)
31 3mhs_B Protein SUS1; multi-pro 21.5 28 0.00095 23.4 0.8 22 36-57 18-39 (96)
No 1
>1dfm_A Endonuclease bglii; restriction endonuclease, restriction enzyme, protein-DNA complex, hydrolase/DNA complex; HET: DNA; 1.50A {Bacillus subtilis} SCOP: c.52.1.5 PDB: 1d2i_A* 1es8_A
Probab=66.43 E-value=10 Score=29.69 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=31.7
Q ss_pred HHHHHHHhhccceeecCCCceeeeeecCceeEEeccccccccceeeeEEEEEecCCeeEE
Q 033957 45 AVLERKLSSLGWERYYDDPELLQFHKRSTVHLISLPKDFNKFKSMHMYDIVVKNRNVFEV 104 (107)
Q Consensus 45 ~~LE~kL~~LGWeRYy~d~~l~QfHkr~sv~LISLPrdF~~fks~HMYDIVVKnrn~F~V 104 (107)
+.|++.|.++||+.. |-+|..|... .|-.|.+ |||=.-||
T Consensus 55 ~~ik~~f~~~GW~e~-----------------i~ip~~~~~~--~~~iDF~-K~rV~lEV 94 (223)
T 1dfm_A 55 QYIKDELVPKHWKNN-----------------IPIPKRFDFL--GTDIDFG-KRDTLVEV 94 (223)
T ss_dssp HHHHHHHGGGTCEEE-----------------EECCGGGGGG--CSEEEEE-ETTEEEEE
T ss_pred HHHHHHHHHcCCccc-----------------cCCCcccCCc--cccceec-cccEEEEE
Confidence 378999999999944 7778877754 8888987 98877665
No 2
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=64.86 E-value=7.4 Score=23.58 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.3
Q ss_pred ehHHHHHHHHhhccceee
Q 033957 42 TSYAVLERKLSSLGWERY 59 (107)
Q Consensus 42 ~Sy~~LE~kL~~LGWeRY 59 (107)
-++.+|.+.|.++||+-.
T Consensus 5 ~~~~elik~L~~~G~~~~ 22 (70)
T 1whz_A 5 PRPEEVARKLRRLGFVER 22 (70)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHCCCEEe
Confidence 368899999999999843
No 3
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=63.34 E-value=11 Score=24.12 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=25.6
Q ss_pred CcceEEEEccCCceeehHHHHHHHHhhcc
Q 033957 27 TRRKVLVHVPTNEVMTSYAVLERKLSSLG 55 (107)
Q Consensus 27 ~rrKvLvh~ps~Evi~Sy~~LE~kL~~LG 55 (107)
++.-|..+.|+|+-++|..+|.+-|.+.|
T Consensus 24 gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~ 52 (69)
T 3vxv_A 24 GKFDVYFISPQGLKFRSKRSLANYLLKNG 52 (69)
T ss_dssp TCEEEEEECTTSCEECSHHHHHHHHHHHC
T ss_pred CcceEEEEcCCCCEeeCHHHHHHHHHhCC
Confidence 35688899999999999999999998865
No 4
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=61.86 E-value=9.8 Score=26.14 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=25.7
Q ss_pred CcceEEEEccCCceeehHHHHHHHHhhcc
Q 033957 27 TRRKVLVHVPTNEVMTSYAVLERKLSSLG 55 (107)
Q Consensus 27 ~rrKvLvh~ps~Evi~Sy~~LE~kL~~LG 55 (107)
++--|..+.|+|+-+.|..+|++-|.+-|
T Consensus 42 gk~DvYY~sP~GkkfRSk~ev~ryL~~~g 70 (97)
T 3c2i_A 42 GKYDVYLINPQGKAFRSKVELIMYFEKVG 70 (97)
T ss_dssp TCEEEEEECTTSCEECSHHHHHHHHHHHT
T ss_pred CcceEEEECCCCCEEECHHHHHHHHHHCC
Confidence 45689999999999999999999998765
No 5
>3d6w_A Methyl-accepting/DNA response regulator; structural genomics, APC7590, lyttr DNA-binding domain, METH accepting/DNA response regulator, PSI-2; 2.40A {Bacillus cereus}
Probab=60.65 E-value=13 Score=23.34 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=24.8
Q ss_pred ceEEEEccCCceee--hHHHHHHHHhhccceeecCCCceeeeeecC
Q 033957 29 RKVLVHVPTNEVMT--SYAVLERKLSSLGWERYYDDPELLQFHKRS 72 (107)
Q Consensus 29 rKvLvh~ps~Evi~--Sy~~LE~kL~~LGWeRYy~d~~l~QfHkr~ 72 (107)
+++.+|+.+++..+ +...||++|.. +..+|-|++.
T Consensus 29 ~~~~i~t~~~~~~~~~tL~~le~~L~~---------~~F~RihrS~ 65 (111)
T 3d6w_A 29 KKTYVNAEELTGTHKYSLQEFEYLLPK---------DSFIRCHRSF 65 (111)
T ss_dssp TEEEEEESSCEEEESSCHHHHHHHSCT---------TTEEEEETTE
T ss_pred CEEEEEECCCEEEhhhhHHHHHhhCCc---------CCEEEeehhh
Confidence 58999998886553 56777777743 3467788773
No 6
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=60.44 E-value=13 Score=23.77 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=24.1
Q ss_pred CcceEEEEccCCceeehHHHHHHHHhh
Q 033957 27 TRRKVLVHVPTNEVMTSYAVLERKLSS 53 (107)
Q Consensus 27 ~rrKvLvh~ps~Evi~Sy~~LE~kL~~ 53 (107)
++.-|.-+.|+|+-++|..+|++-|.+
T Consensus 31 ~k~DvyY~sP~Gkr~RS~~ev~~YL~~ 57 (72)
T 2ky8_A 31 GKSDVYYFSPSGKKFRSKPQLARYLGN 57 (72)
T ss_dssp TCEEEEEECTTCCEEESHHHHHHHHTT
T ss_pred CceEEEEECCCCCEeEcHHHHHHHHhc
Confidence 456788899999999999999999876
No 7
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=53.99 E-value=12 Score=24.36 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.5
Q ss_pred CcceEEEEccCCceeehHHHHHHHHh
Q 033957 27 TRRKVLVHVPTNEVMTSYAVLERKLS 52 (107)
Q Consensus 27 ~rrKvLvh~ps~Evi~Sy~~LE~kL~ 52 (107)
++.-|..+.|+|+-++|..+|++-|.
T Consensus 29 gk~DvyY~sP~Gkk~RS~~ev~ryL~ 54 (75)
T 1d9n_A 29 GRSDTYYQSPTGDRIRSKVELTRYLG 54 (75)
T ss_dssp CCCCEEEECSSSCEECSTHHHHHHHC
T ss_pred CceEEEEECCCCCeeecHHHHHHHhc
Confidence 35689999999999999999999995
No 8
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=53.11 E-value=8.6 Score=24.69 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=18.7
Q ss_pred EEccCCceeeh--HHHHHHHHhhcc
Q 033957 33 VHVPTNEVMTS--YAVLERKLSSLG 55 (107)
Q Consensus 33 vh~ps~Evi~S--y~~LE~kL~~LG 55 (107)
|.++.|++++. -++|+++|.+||
T Consensus 59 I~i~Dg~~l~~~~~~el~~~L~el~ 83 (92)
T 2lqo_A 59 VKFADGSTLTNPSADEVKAKLVKIA 83 (92)
T ss_dssp EEETTSCEEESCCHHHHHHHHHHHH
T ss_pred EEEeCCEEEeCCCHHHHHHHHHHhc
Confidence 45688999874 689999999886
No 9
>1jb7_B Telomere-binding protein beta subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 PDB: 1otc_B* 1ph6_B 1ph1_B 1ph3_B 1ph2_B 1pa6_B 1ph4_B 1ph5_B* 1ph7_B 1ph8_B 1ph9_B 1phj_B*
Probab=48.27 E-value=1.1 Score=35.55 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=18.7
Q ss_pred EccCCceeehHHHHHHHHhhcc
Q 033957 34 HVPTNEVMTSYAVLERKLSSLG 55 (107)
Q Consensus 34 h~ps~Evi~Sy~~LE~kL~~LG 55 (107)
-+.|-||.|||+-||.||.-.-
T Consensus 99 rvnsaevftsyanlearlivhs 120 (260)
T 1jb7_B 99 RVNSAEVFTSYANLEARLIVHS 120 (260)
T ss_dssp ECCTTTCSSCBTTEEEEEEEEE
T ss_pred ecchHHHhHhhhchhheeeeec
Confidence 4789999999999999986443
No 10
>4g4k_A Accessory gene regulator protein A; AGRA, response regulator, activator, transcription factor, phosphoprotein, transcription regulation; 1.52A {Staphylococcus aureus} PDB: 3bs1_A
Probab=44.90 E-value=17 Score=22.81 Aligned_cols=33 Identities=9% Similarity=0.233 Sum_probs=22.0
Q ss_pred ceEEEEccCCceee--hHHHHHHHHhhccceeecCCCceeeeeecC
Q 033957 29 RKVLVHVPTNEVMT--SYAVLERKLSSLGWERYYDDPELLQFHKRS 72 (107)
Q Consensus 29 rKvLvh~ps~Evi~--Sy~~LE~kL~~LGWeRYy~d~~l~QfHkr~ 72 (107)
+++.+|+.+|+..+ +.+.||+.| |..+|-|++.
T Consensus 34 ~~~~i~t~~~~~~~~~~L~~le~~L-----------~~F~rihrS~ 68 (103)
T 4g4k_A 34 HRLIAHLDNRQIEFYGNLKELSQLD-----------DRFFRCHNSF 68 (103)
T ss_dssp SSEEEEESSCEEEECCCHHHHHTSC-----------TTEEEEETTE
T ss_pred CEEEEEECCcEEEEccCHHHHhhhC-----------hhhEEEcceE
Confidence 68999999987543 445555443 1277888873
No 11
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=43.99 E-value=29 Score=25.12 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=25.6
Q ss_pred CcceEEEEccCCceeehHHHHHHHHhhcc
Q 033957 27 TRRKVLVHVPTNEVMTSYAVLERKLSSLG 55 (107)
Q Consensus 27 ~rrKvLvh~ps~Evi~Sy~~LE~kL~~LG 55 (107)
++--|..+.|+|+-+.|..+|++-|.+.|
T Consensus 56 gk~DVYY~SP~GKkfRSk~Ev~ryL~~~~ 84 (133)
T 1ub1_A 56 GKYDVYLINPQGKAFRSKVELIAYFEKVG 84 (133)
T ss_dssp CSEEEEEECTTSCEESSHHHHHHHHTTSC
T ss_pred CceeEEEECCCCCeeeCHHHHHHHHHHCC
Confidence 45689999999999999999999998665
No 12
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=43.28 E-value=25 Score=23.32 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=32.8
Q ss_pred EEEccCCceeehHHHHHHHHhhccceeecCCCceeeeeec-CceeEEe
Q 033957 32 LVHVPTNEVMTSYAVLERKLSSLGWERYYDDPELLQFHKR-STVHLIS 78 (107)
Q Consensus 32 Lvh~ps~Evi~Sy~~LE~kL~~LGWeRYy~d~~l~QfHkr-~sv~LIS 78 (107)
-+.+-.|+.+ +.+.|.++|.++|.+|--....-=||-.| +.+|+.+
T Consensus 14 ~l~l~~G~~i-~~~~l~~~L~~~GY~r~~~v~~~Gef~vRG~iiDIfp 60 (106)
T 3fpn_B 14 VVSLRVGMEI-ERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFP 60 (106)
T ss_dssp CEEEETTCBC-CHHHHHHHHHHTTCEECTTCCCTTEEEEETTEEEEEC
T ss_pred CeEEECCCCc-CHHHHHHHHHHcCCEECCccCCcEEEEEECCEEEEec
Confidence 3455667765 58999999999999997433334578777 6667654
No 13
>2i0q_B Telomere-binding protein beta subunit; single strand DNA-protein complex, structural protein/DNA complex; 1.91A {Sterkiella nova} SCOP: b.40.4.3
Probab=40.72 E-value=1.7 Score=35.87 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=18.7
Q ss_pred EccCCceeehHHHHHHHHhhcc
Q 033957 34 HVPTNEVMTSYAVLERKLSSLG 55 (107)
Q Consensus 34 h~ps~Evi~Sy~~LE~kL~~LG 55 (107)
-+.|-||.|||+-||.||.-.-
T Consensus 99 rvnsaevftsyanlearlivhs 120 (385)
T 2i0q_B 99 RVNSAEVFTSYANLEARLIVHS 120 (385)
T ss_dssp ECCTTTCSSCBTTEEEEEEEEE
T ss_pred ecchHhHhhhhhchhheeeeec
Confidence 4789999999999999986443
No 14
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=39.68 E-value=12 Score=28.06 Aligned_cols=40 Identities=25% Similarity=0.634 Sum_probs=25.1
Q ss_pred HHHHHHHHhhccceeec-CCCce--eeeeec---CceeEE--eccccc
Q 033957 44 YAVLERKLSSLGWERYY-DDPEL--LQFHKR---STVHLI--SLPKDF 83 (107)
Q Consensus 44 y~~LE~kL~~LGWeRYy-~d~~l--~QfHkr---~sv~LI--SLPrdF 83 (107)
|+.|=+.+.++||+|.- -|.++ +++=.+ +-.|+| .||..+
T Consensus 3 y~~li~Ei~~iGW~~l~~id~~~~~i~l~~~D~~gR~H~l~v~l~~~y 50 (186)
T 3zqs_A 3 YSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKY 50 (186)
T ss_dssp SCSHHHHHHHHCGGGEEEECTTSSEEEEEEECTTSCEEEEEEECCTTT
T ss_pred HHHHHHHHHHhCCceeeeecCCccEEEEEEEeCCCCeEEEEEEECCCC
Confidence 44566778899999984 46665 555433 455664 445544
No 15
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=30.27 E-value=20 Score=22.32 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=10.6
Q ss_pred hHHHHHHHHhhc
Q 033957 43 SYAVLERKLSSL 54 (107)
Q Consensus 43 Sy~~LE~kL~~L 54 (107)
||+.|+++|.+|
T Consensus 11 s~eEL~~rl~~L 22 (51)
T 2jo8_A 11 TVEDLQKRLLAL 22 (51)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc
Confidence 899999999876
No 16
>4de9_A Putative transcriptional regulator YWTF; possible role in WALL techoic acid synthesis, membrane prote; HET: VTP; 1.79A {Bacillus subtilis} PDB: 3mej_A*
Probab=30.03 E-value=26 Score=27.07 Aligned_cols=19 Identities=32% Similarity=0.807 Sum_probs=15.0
Q ss_pred eeeeeec-CceeEEeccccc
Q 033957 65 LLQFHKR-STVHLISLPKDF 83 (107)
Q Consensus 65 l~QfHkr-~sv~LISLPrdF 83 (107)
|+.+... ..+.+||+|||-
T Consensus 57 l~~in~~~~~~~lvSIPRDt 76 (286)
T 4de9_A 57 LVTFNRKEKTAKMLSIPRDA 76 (286)
T ss_dssp EEEEETTTTEEEEEECCTTB
T ss_pred EEEEcCCCCEEEEEEecCCC
Confidence 4666664 889999999983
No 17
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=29.96 E-value=22 Score=26.09 Aligned_cols=13 Identities=23% Similarity=0.746 Sum_probs=10.5
Q ss_pred CceeEEE---eCceEE
Q 033957 1 MSGVWVF---KNGVVR 13 (107)
Q Consensus 1 MsGVWvF---knGV~r 13 (107)
|++|||| +||.++
T Consensus 3 m~~ilV~~E~~~g~l~ 18 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVA 18 (217)
T ss_dssp CCCEEEECCEETTEEC
T ss_pred cccEEEEEECcCCEEC
Confidence 8999999 578764
No 18
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=27.46 E-value=2.3 Score=29.90 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=21.7
Q ss_pred hccceeecCCCceeeeeecCceeEEecccccc
Q 033957 53 SLGWERYYDDPELLQFHKRSTVHLISLPKDFN 84 (107)
Q Consensus 53 ~LGWeRYy~d~~l~QfHkr~sv~LISLPrdF~ 84 (107)
.-|||||....++++|.-..+-.--.||..|.
T Consensus 47 p~~we~~~~~~~lV~~vn~~~d~~~pLP~GWE 78 (109)
T 3l4h_A 47 ARNFERYQHNRDLVNFINMFADTRLELPRGWE 78 (109)
T ss_dssp THHHHHHTTCHHHHHHHHTTCCTTSCCCTTEE
T ss_pred CcChhhhcCcCCceEEeccCCCCCCCCCCCCe
Confidence 45899998888888876543333345887764
No 19
>3nxh_A Transcriptional regulator YVHJ; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; 2.58A {Bacillus subtilis subsp}
Probab=27.34 E-value=31 Score=26.38 Aligned_cols=18 Identities=22% Similarity=0.595 Sum_probs=13.3
Q ss_pred eeeee-cCceeEEeccccc
Q 033957 66 LQFHK-RSTVHLISLPKDF 83 (107)
Q Consensus 66 ~QfHk-r~sv~LISLPrdF 83 (107)
+.+.. ...+.+||+|||-
T Consensus 31 ~~i~~~~~~~~lvSIPRDt 49 (269)
T 3nxh_A 31 VTLDPKNKTMKMLSIPRDT 49 (269)
T ss_dssp EEEEGGGTEEEEEEECTTB
T ss_pred EEEcCCCCEEEEEEecCCc
Confidence 44444 3789999999983
No 20
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=27.28 E-value=14 Score=26.43 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=15.9
Q ss_pred ccCCceeehHHHHHHHHhhc
Q 033957 35 VPTNEVMTSYAVLERKLSSL 54 (107)
Q Consensus 35 ~ps~Evi~Sy~~LE~kL~~L 54 (107)
+|+.+|++++..||.-|..|
T Consensus 2 ~~a~~V~s~l~~LEaeyq~L 21 (119)
T 2avr_X 2 TDAASLVGELQALDAEYQNL 21 (119)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 68899999999999887665
No 21
>3qfi_A Transcriptional regulator; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.71A {Enterococcus faecalis}
Probab=26.20 E-value=33 Score=27.00 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=15.0
Q ss_pred eeeeeec-CceeEEeccccc
Q 033957 65 LLQFHKR-STVHLISLPKDF 83 (107)
Q Consensus 65 l~QfHkr-~sv~LISLPrdF 83 (107)
|+.+... ..+.|||+|||-
T Consensus 47 l~~in~~~~~i~lvSIPRDt 66 (301)
T 3qfi_A 47 VVTINPKENKSTMISLDRDI 66 (301)
T ss_dssp EEEEEGGGTEEEEEEECTTB
T ss_pred EEEEcCCCCEEEEEEecCCc
Confidence 4666654 889999999984
No 22
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...
Probab=25.98 E-value=14 Score=27.87 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=0.0
Q ss_pred eecCceeEEecccccccc
Q 033957 69 HKRSTVHLISLPKDFNKF 86 (107)
Q Consensus 69 Hkr~sv~LISLPrdF~~f 86 (107)
|.++++||+++|.-|..-
T Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (240)
T 3u9h_A 6 HHSSGVDLGTENLYFQSM 23 (240)
T ss_dssp ------------------
T ss_pred ccccccceeecccccchh
Confidence 456999999999988643
No 23
>3okz_A Putative uncharacterized protein GBS0355; structural genomics, PSI-biology; 2.70A {Streptococcus agalactiae}
Probab=25.59 E-value=32 Score=26.98 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=14.6
Q ss_pred eeeeeec-CceeEEeccccc
Q 033957 65 LLQFHKR-STVHLISLPKDF 83 (107)
Q Consensus 65 l~QfHkr-~sv~LISLPrdF 83 (107)
|+.+... ..+.+||+|||-
T Consensus 47 l~~in~~~~~~~lvSIPRDt 66 (306)
T 3okz_A 47 LVTINPKTNKTTMTSLERDV 66 (306)
T ss_dssp EEEEETTTTEEEEEEECTTB
T ss_pred EEEEcCCCCEEEEEEecCCc
Confidence 4556554 789999999984
No 24
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=25.43 E-value=38 Score=22.51 Aligned_cols=26 Identities=23% Similarity=0.604 Sum_probs=18.7
Q ss_pred eeEEE--eCceEEeeCCCccCCCCCCCcceEEEEccCCce
Q 033957 3 GVWVF--KNGVVRLENPGAEACSNSNTRRKVLVHVPTNEV 40 (107)
Q Consensus 3 GVWvF--knGV~rlenp~~~~~~~~~~rrKvLvh~ps~Ev 40 (107)
.-|.+ |+|||.+. .+-.+.+.++||.
T Consensus 47 nkWKc~LKdGim~in------------gkdy~F~ka~GE~ 74 (76)
T 1nvp_C 47 NKWKFHLKDGIMNLN------------GRDYIFSKAIGDA 74 (76)
T ss_dssp TEEEEEEEEEEEEET------------TEEEEEEEEEEEE
T ss_pred ceEEEEEeccEEEEC------------CEEEEEeccceee
Confidence 45876 89999984 2467777777763
No 25
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=25.04 E-value=35 Score=27.37 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=14.8
Q ss_pred eeeeeec-CceeEEeccccc
Q 033957 65 LLQFHKR-STVHLISLPKDF 83 (107)
Q Consensus 65 l~QfHkr-~sv~LISLPrdF 83 (107)
|+.+... ..+.|+|+|||-
T Consensus 154 l~~i~~~~~~~~lvSIPRDt 173 (398)
T 2xxp_A 154 LMTVNRDTKKILLTTTPRDA 173 (398)
T ss_dssp EEEEETTTTEEEEEECCTTB
T ss_pred EEEEcCCCCeEEEEEECCcc
Confidence 4666554 889999999984
No 26
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, unknown FUN; 2.61A {Listeria innocua} PDB: 3nro_A
Probab=24.91 E-value=36 Score=26.87 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=14.8
Q ss_pred eeeeeec-CceeEEeccccc
Q 033957 65 LLQFHKR-STVHLISLPKDF 83 (107)
Q Consensus 65 l~QfHkr-~sv~LISLPrdF 83 (107)
|+.+... ..+.++|+|||-
T Consensus 96 l~~in~~~~~~~lvSIPRDt 115 (321)
T 3owq_A 96 LATANKQQNAVEMVSIPRDT 115 (321)
T ss_dssp EEEEETTTTEEEEEECCTTB
T ss_pred EEEEeCCCCEEEEEEecCCc
Confidence 4566654 899999999984
No 27
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=23.96 E-value=29 Score=23.05 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=22.8
Q ss_pred EEEEccCCceeehHHHHHHHHhhccceeecC
Q 033957 31 VLVHVPTNEVMTSYAVLERKLSSLGWERYYD 61 (107)
Q Consensus 31 vLvh~ps~Evi~Sy~~LE~kL~~LGWeRYy~ 61 (107)
+-+.+-||.--+.-+.+++.|..+|+..||+
T Consensus 51 ~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd 81 (189)
T 3ib6_A 51 FKQAILSNTATSDTEVIKRVLTNFGIIDYFD 81 (189)
T ss_dssp CEEEEEECCSSCCHHHHHHHHHHTTCGGGEE
T ss_pred CEEEEEECCCccchHHHHHHHHhcCchhheE
Confidence 4455556655555688999999999988864
No 28
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=23.76 E-value=43 Score=22.45 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=18.9
Q ss_pred eeEEE--eCceEEeeCCCccCCCCCCCcceEEEEccCCce
Q 033957 3 GVWVF--KNGVVRLENPGAEACSNSNTRRKVLVHVPTNEV 40 (107)
Q Consensus 3 GVWvF--knGV~rlenp~~~~~~~~~~rrKvLvh~ps~Ev 40 (107)
+-|.+ |+||+.+. .+-.+.+.++||.
T Consensus 49 nKWKc~LKdGi~~in------------gkDy~F~ka~GE~ 76 (79)
T 1nh2_C 49 ARWKCSLKDGVVTIN------------RNDYTFQKAQVEA 76 (79)
T ss_dssp TEEEEEEEEEEEEET------------TEEEEEEEEEEEE
T ss_pred ceEEEEEeeeEEEEC------------CEEEEEecccEEE
Confidence 45776 89999984 2467777777773
No 29
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=21.72 E-value=38 Score=20.32 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=9.8
Q ss_pred HHHHHHHHhhc
Q 033957 44 YAVLERKLSSL 54 (107)
Q Consensus 44 y~~LE~kL~~L 54 (107)
=+.|++||.+|
T Consensus 38 eD~L~~RLaaL 48 (50)
T 3eab_G 38 QDELSQRLARL 48 (50)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 68999999987
No 30
>2ggv_A NS2B, non-structural protein 2B; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus}
Probab=21.56 E-value=35 Score=21.44 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=8.2
Q ss_pred eCceEEe-eCCCccCCCCCCCc
Q 033957 8 KNGVVRL-ENPGAEACSNSNTR 28 (107)
Q Consensus 8 knGV~rl-enp~~~~~~~~~~r 28 (107)
.+|=++| +.|..+.++++++|
T Consensus 34 ~~G~f~L~~ee~~~~~~~~~~~ 55 (56)
T 2ggv_A 34 DDGNFQLMNDPGAGGGGSGGGR 55 (56)
T ss_dssp TTSCEEETTCTTC---------
T ss_pred CCCCEEEcccCCCCCCCCCCCC
Confidence 3788899 55555443333333
No 31
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=21.53 E-value=28 Score=23.37 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=16.9
Q ss_pred cCCceeehHHHHHHHHhhccce
Q 033957 36 PTNEVMTSYAVLERKLSSLGWE 57 (107)
Q Consensus 36 ps~Evi~Sy~~LE~kL~~LGWe 57 (107)
-|||.-.=-+.|.+||.+-||.
T Consensus 18 eSGe~erL~~lL~~rL~EcGW~ 39 (96)
T 3mhs_B 18 ESGNYELISNELKARLLQEGWV 39 (96)
T ss_dssp HTTHHHHHHHHHHHHHHHTTHH
T ss_pred HCCcHHHHHHHHHHHHHHCCcH
Confidence 4566555567899999999996
Done!