BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033962
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 79/106 (74%)
Query: 2 ALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEW 61
AL KA+E SS VVVFSKT C +C VK+L Q+G ++K +ELD+ SDGS +QSALA W
Sbjct: 9 ALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHW 68
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 107
TG+ TVPNVFIGGK IGGCD+ H+ +L+PLL +A A AKT+A
Sbjct: 69 TGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAATAKTSA 114
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 77/106 (72%)
Query: 2 ALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEW 61
AL KA+E SS VVVFSKT C +C VK+L Q+G ++K +ELD+ SDGS +QSALA W
Sbjct: 10 ALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHW 69
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 107
TG+ TVPNVFIGGK IGGCD+ H+ +L+PLL +A A AK A
Sbjct: 70 TGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAATAKNPA 115
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 7 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDK-ESDGSDIQSALAEWTGQK 65
++TV+ N VVV+SKT C + VK LF++L V +ELD+ + G IQ L TGQ
Sbjct: 12 KKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTGQH 71
Query: 66 TVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGA 101
TVPNVFIGGKHIGGC T L+R+G+L PLL+EA A
Sbjct: 72 TVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 64/98 (65%)
Query: 1 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAE 60
M + + QET+S N VV+FSKT C +C K+LF + V +K +ELD G+ Q AL +
Sbjct: 23 MPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYK 82
Query: 61 WTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 98
TG++TVP +F+ G IGG T LH+EGKL+PL+ +
Sbjct: 83 MTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 120
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 62/94 (65%)
Query: 5 KAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ 64
+ QET+S N VV+FSKT C +C K+LF + V +K +ELD G+ Q AL + TG+
Sbjct: 41 QIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGE 100
Query: 65 KTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 98
+TVP +F+ G IGG T LH+EGKL+PL+ +
Sbjct: 101 RTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 134
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 61/92 (66%)
Query: 7 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKT 66
QET+S N VV+FSKT C +C K+LF + V +K +ELD G+ Q AL + TG++T
Sbjct: 21 QETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERT 80
Query: 67 VPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 98
VP +F+ G IGG T LH+EGKL+PL+ +
Sbjct: 81 VPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 112
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 7 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDK-ESDGSDIQSALAEWTGQK 65
++TV+ N+VV++SKT C +C VK LF++LGV +ELD+ G +Q L TGQ
Sbjct: 13 RKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQH 72
Query: 66 TVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGA 101
TVPNVF+ GKHIGGC T L+R+G L +L EA
Sbjct: 73 TVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANG 108
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 56/89 (62%)
Query: 10 VSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPN 69
+ + VV+FSK+ CP VKELF LGV +ELD+ DG+ +Q L+E T QKTVPN
Sbjct: 14 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPN 73
Query: 70 VFIGGKHIGGCDSTTALHREGKLVPLLTE 98
+F+ H+GGCD T ++ G L LL E
Sbjct: 74 IFVNKVHVGGCDQTFQAYQSGLLQKLLQE 102
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 7 QETVSSNSVVVFSKTLCPFC-VSVKELFQQLGVTFK---AIELDKESDGSDIQSALAEWT 62
++ + V V +KT CP+C ++ LFQ+L V +ELD+ S+GS+IQ AL E +
Sbjct: 11 KDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEIS 70
Query: 63 GQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 96
GQKTVPNV+I GKHIGG L + GKL +L
Sbjct: 71 GQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 104
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 7 QETVSSNSVVVFSKTLCPFC-VSVKELFQQLGVTFK---AIELDKESDGSDIQSALAEWT 62
++ + V V +KT CP+C ++ LFQ+L V +ELD+ S+GS+IQ AL E +
Sbjct: 31 KDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEIS 90
Query: 63 GQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 96
GQKTVPNV+I GKHIGG L + GKL +L
Sbjct: 91 GQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 124
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 7 QETVSSNSVVVFSKTLCPFC-VSVKELFQQLGVTFK---AIELDKESDGSDIQSALAEWT 62
++ + V V +KT CP+ ++ LFQ+L V +ELD+ S+GS+IQ AL E +
Sbjct: 14 KDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEIS 73
Query: 63 GQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 96
GQKTVPNV+I GKHIGG L + GKL +L
Sbjct: 74 GQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 107
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 10 VSSNSVVVFSKTLCPFCVSVKELFQQLGVT---FKAIELDKESDGSDIQSALAEWTGQKT 66
+ VVVF K CPFC +EL QL + +++ SD ++IQ L + TG +T
Sbjct: 9 IQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGART 68
Query: 67 VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 102
VP VFIG + IGGC ++H+ G+L+ L + GAV
Sbjct: 69 VPRVFIGKECIGGCTDLESMHKRGELLTRLQQVGAV 104
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 3 LPKAQETVSSNSVVVFSKTLCPFC-VSVKELFQQLGVTFKAI---ELDKESDGSDIQSAL 58
+ ++ ++ N + V SKT CP+C ++ LF++L V + +L+ +G+DIQ+AL
Sbjct: 15 IKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAAL 74
Query: 59 AEWTGQKTVPNVFIGGKHIGGCDS 82
E GQ+TVPN++I GKHIGG D
Sbjct: 75 YEINGQRTVPNIYINGKHIGGNDD 98
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 7 QETVSSNSVVVFSKTLCPFC-VSVKELFQQLGVTFKAI---ELDKESDGSDIQSALAEWT 62
++ ++ N + V SKT CP+ ++ LF++L V + +L+ +G+DIQ+AL E
Sbjct: 11 KDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEIN 70
Query: 63 GQKTVPNVFIGGKHIGGCDS 82
GQ+TVPN++I GKHIGG D
Sbjct: 71 GQRTVPNIYINGKHIGGNDD 90
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 57/93 (61%)
Query: 7 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKT 66
++TV S +V++FSKT CP+C VK++ + + IELD+ S+GS IQ LA ++ +T
Sbjct: 12 RKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIET 71
Query: 67 VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 99
VP +F+ GK IG + + +L ++ E+
Sbjct: 72 VPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 57/93 (61%)
Query: 7 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKT 66
++TV S +V++FSKT CP+C VK++ + + IELD+ S+GS IQ LA ++ +T
Sbjct: 12 RKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIET 71
Query: 67 VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 99
VP +F+ GK IG + + +L ++ E+
Sbjct: 72 VPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 57/93 (61%)
Query: 7 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKT 66
++TV S +V++FSKT CP+C VK++ + + IELD+ S+GS IQ LA ++ +T
Sbjct: 12 RKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIET 71
Query: 67 VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 99
VP +F+ GK IG + + +L ++ E+
Sbjct: 72 VPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 68.9 bits (167), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Query: 7 QETVSSNSVVVFSKTLCPFC-VSVKELFQQLGVTFKAI---ELDKESDGSDIQSALAEWT 62
++ ++ N + V SKT CP+ ++ LF++L V + +L+ +G+DIQ+AL E
Sbjct: 255 KDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEIN 314
Query: 63 GQKTVPNVFIGGKHIGGCD 81
GQ+TVPN++I GKHIGG D
Sbjct: 315 GQRTVPNIYINGKHIGGND 333
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIG 73
V+++++ CP+C K L + G F I+ S ++++ + E +G+ T P +FIG
Sbjct: 7 DVIIYTRPGCPYCARAKALLARKGAEFNEID---ASATPELRAEMQERSGRNTFPQIFIG 63
Query: 74 GKHIGGCDSTTALHREGKLVPLL 96
H+GGCD AL EGKL LL
Sbjct: 64 SVHVGGCDDLYALEDEGKLDSLL 86
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 10 VSSNSVVVFSKTLCPFCVSVKELFQQLGVT---FKAIELDKESDGSDIQSALAEWTGQKT 66
+ VVVF K CP+C +E+ QL + + +++ + ++IQ L + TG +T
Sbjct: 10 IQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGART 69
Query: 67 VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 102
VP VFIG IGGC +L + G+L+ L + GA+
Sbjct: 70 VPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGAL 105
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 11 SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV 70
S ++++++ CP+C ++L + GV + I+ + S Q + G+ T P +
Sbjct: 4 SMKEIILYTRPNCPYCKRARDLLDKKGVKYTDID----ASTSLRQEMVQRANGRNTFPQI 59
Query: 71 FIGGKHIGGCDSTTALHREGKLVPLLTE 98
FIG H+GGCD AL +GKL LL +
Sbjct: 60 FIGDYHVGGCDDLYALENKGKLDSLLQD 87
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 6 AQETVSSN----SVVVFSKTLCPFCVSVKELFQQLGVT---FKAIELDKESDGSDIQSAL 58
AQE V+S VVVF K CP+ +E+ QL + + +++ + ++IQ L
Sbjct: 1 AQEFVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYL 60
Query: 59 AEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 102
+ TG +TVP VFIG IGG +L + G+L+ L + GA+
Sbjct: 61 QQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLKQIGAL 104
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully
Oxidized Form
Length = 82
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIG 73
+V +++K CP+C K L GV+F+ + +D + + + + +G+ TVP +FI
Sbjct: 2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAK---REEMIKRSGRTTVPQIFID 58
Query: 74 GKHIGGCDSTTALHREGKLVPLL 96
+HIGG D AL G L PLL
Sbjct: 59 AQHIGGYDDLYALDARGGLDPLL 81
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 12 SNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF 71
S + +++ + CPFC+ L ++ GV F+ +D D ++ A G++++P +F
Sbjct: 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCID--GDNEAREAMAARANGKRSLPQIF 72
Query: 72 IGGKHIGGCDSTTALHREGKLVPLL 96
I +HIGGCD AL GKL PLL
Sbjct: 73 IDDQHIGGCDDIYALDGAGKLDPLL 97
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 15 VVVFSKTLCPFCVSVKELFQ---QLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF 71
+++FSK+ C + KEL + Q + IELDK G ++Q + TG+ TVPN+
Sbjct: 16 IIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLL 75
Query: 72 IGGKHIGGCDSTTALHREGKLV 93
+ G GG + LH +GKL+
Sbjct: 76 VNGVSRGGNEEIKKLHTQGKLL 97
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIG 73
S+ +F+K CPFC K+L G++F+ I L ++ +++ +G+ TVP VFIG
Sbjct: 171 SISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIVSVRAV----SGRTTVPQVFIG 226
Query: 74 GKHIGGCDS 82
GKHIGG D
Sbjct: 227 GKHIGGSDD 235
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIG 73
+V +++K CP+ K L GV+F+ + +D + + + + +G+ TVP +FI
Sbjct: 2 NVEIYTKETCPYSHRAKALLSSKGVSFQELPIDGNAAK---REEMIKRSGRTTVPQIFID 58
Query: 74 GKHIGGCDSTTALHREGKLVPLL 96
+HIGG D AL G L PLL
Sbjct: 59 AQHIGGYDDLYALDARGGLDPLL 81
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 1 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGV---TFKAIELDKESDGSDIQSA 57
MA Q+ +++N V +F K CPFC + ++ + ++ +++ + ++++
Sbjct: 7 MAEEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDY 66
Query: 58 LAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 102
+ TG KTVP +F G IGG + L +L+ G +
Sbjct: 67 FEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGVL 111
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 7 QETVSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEW 61
++ V+S VV+F K +C F +V ++ + L V F+ + + + ++ L E+
Sbjct: 12 EKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNI---LENEMLRQGLKEY 68
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKL 92
+ T P ++IGG+ GGCD T + G+L
Sbjct: 69 SNWPTFPQLYIGGEFFGGCDITLEAFKTGEL 99
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 1 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGV---TFKAIELDKESDGSDIQSA 57
MA Q+ +++N V +F K PFC + ++ + ++ +++ + ++++
Sbjct: 7 MAEEFVQQRLANNKVTIFVKYTXPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDY 66
Query: 58 LAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 102
+ TG KTVP +F G IGG + L +L+ G +
Sbjct: 67 FEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGVL 111
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 10 VSSNSVVVFSK-----TLCPFCVSVKELFQQLGVT-FKAIELDKESDGSDIQSALAEWTG 63
V + VVVF K C F +V ++ + GV + A + D +++ + +++
Sbjct: 17 VKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNV---LDDPELRQGIKDYSN 73
Query: 64 QKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 100
T+P V++ G+ +GGCD +H+ G LV L + G
Sbjct: 74 WPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLG 110
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 5 KAQETVSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALA 59
K Q ++ N ++++ K C F + G F +++ + DI++ L
Sbjct: 7 KIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ---NPDIRAELP 63
Query: 60 EWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKT 105
++ T P +++ G+ +GGCD +++ G+L L+ E A K+
Sbjct: 64 KYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKS 109
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 1 MALPKAQET-----VSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESD 50
MAL A +T V+S+ VV+F K C F +V ++ + L F+++ + +
Sbjct: 1 MALTPALKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNI---LE 57
Query: 51 GSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKL 92
++ L E++ T P ++I G+ GGCD T ++ G+L
Sbjct: 58 NELLRQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGEL 99
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 5 KAQETVSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALA 59
K Q ++ N ++++ K C F + G F +++ + DI++ L
Sbjct: 27 KIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ---NPDIRAELP 83
Query: 60 EWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKT 105
++ T P +++ G+ +GGCD +++ G+L L+ E A K+
Sbjct: 84 KYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKS 129
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 7 QETVSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEW 61
++ + S VV+F K C F + L GV + +++ + E+
Sbjct: 10 EDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEF 69
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 102
+ T+P +++ + IGGCD T++ R G+L LL EA A+
Sbjct: 70 SEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQAL 110
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 4 PKAQETV----SSNSVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDI 54
PK +E + + SV++F K C F + E+ GV ++ ++ + ++
Sbjct: 4 PKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDI---LEDEEV 60
Query: 55 QSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 96
+ L ++ T P +++ G+ +GG D L G+L+P+L
Sbjct: 61 RQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPIL 102
>pdb|3LGC|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis
pdb|3MSZ|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
pdb|3MSZ|B Chain B, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
Length = 89
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 11 SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ-----K 65
++ V ++++ CP+CV K+ F++ + F +D + S + +G+
Sbjct: 2 NAXKVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEXNQ-SGKVIFPIS 60
Query: 66 TVPNVFIGGKHIGG 79
TVP +FI +HIGG
Sbjct: 61 TVPQIFIDDEHIGG 74
>pdb|1EGO|A Chain A, Nmr Structure Of Oxidized Escherichia Coli Glutaredoxin:
Comparison With Reduced E. Coli Glutaredoxin And
Functionally Related Proteins
pdb|1EGR|A Chain A, Sequence-Specific 1h N.M.R. Assignments And
Determination Of The Three-Dimensional Structure Of
Reduced Escherichia Coli Glutaredoxin
Length = 85
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 16 VVFSKTLCPFCVSVKELFQQLGV---TFKAIELDKESDG---SDIQSALAEWTGQKTVPN 69
V+F ++ CP+CV K+L ++L F+ +D ++G D+Q + +TVP
Sbjct: 4 VIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPV--ETVPQ 61
Query: 70 VFIGGKHIGGCDSTTALHREG 90
+F+ +HIGG A +E
Sbjct: 62 IFVDQQHIGGYTDFAAWVKEN 82
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 14 SVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVP 68
SV++F K C F + E+ GV ++ ++ ++ + ++ L ++ T P
Sbjct: 16 SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEE---VRQGLKTFSNWPTYP 72
Query: 69 NVFIGGKHIGGCDSTTALHREGKLVPLL 96
+++ G +GG D L G+L+P+L
Sbjct: 73 QLYVRGDLVGGLDIVKELKDNGELLPIL 100
>pdb|1QFN|A Chain A, Glutaredoxin-1-Ribonucleotide Reductase B1 Mixed
Disulfide Bond
pdb|1GRX|A Chain A, Structure Of E. Coli Glutaredoxin
Length = 85
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 16 VVFSKTLCPFCVSVKELFQQLGV---TFKAIELDKESDG---SDIQSALAEWTGQKTVPN 69
V+F ++ CP+ V K+L ++L F+ +D ++G D+Q + +TVP
Sbjct: 4 VIFGRSGCPYSVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPV--ETVPQ 61
Query: 70 VFIGGKHIGGCDSTTALHREG 90
+F+ +HIGG A +E
Sbjct: 62 IFVDQQHIGGYTDFAAWVKEN 82
>pdb|3ZIJ|A Chain A, Crystal Structure Of The Thioredoxin-like Protein Bc3987
pdb|3ZIJ|B Chain B, Crystal Structure Of The Thioredoxin-like Protein Bc3987
Length = 78
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 17 VFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKH 76
V+++ CP CV VKE + V ++ E D + D + L ++ T P V I G+
Sbjct: 6 VYTQPDCPPCVIVKEFLKHNNVAYE--EFDVKKDAAARNRLLYDYDSYST-PTVVIDGEV 62
Query: 77 IGG 79
+ G
Sbjct: 63 VAG 65
>pdb|3ZIT|A Chain A, Crystal Structure Of The Thioredoxin-like Protein Bc3987
Mutant T8a
pdb|3ZIT|B Chain B, Crystal Structure Of The Thioredoxin-like Protein Bc3987
Mutant T8a
Length = 78
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 17 VFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKH 76
V+++ CP CV VKE + V ++ E D + D + L ++ T P V I G+
Sbjct: 6 VYAQPDCPPCVIVKEFLKHNNVAYE--EFDVKKDAAARNRLLYDYDSYST-PTVVIDGEV 62
Query: 77 IGG 79
+ G
Sbjct: 63 VAG 65
>pdb|3IC4|A Chain A, The Crystal Structure Of The Glutaredoxin(Grx-1) From
Archaeoglobus Fulgidus
Length = 92
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAE---WTGQKTVPNV 70
V+ + + CP C E ++ GV F+ I +DK +G + + + + +G +VP V
Sbjct: 13 EVLXYGLSTCPHCKRTLEFLKREGVDFEVIWIDK-LEGEERKKVIEKVHSISGSYSVPVV 71
Query: 71 FIGGKHIGGCDS 82
G KH+ G +
Sbjct: 72 VKGDKHVLGYNE 83
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced
Form
Length = 110
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 12 SNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPN-V 70
S+++V F K LCP C +++++ + G +A ++ S S+ + L + G + VP V
Sbjct: 20 SDAIVFFHKNLCPHCKNMEKVLDKFGA--RAPQVAISSVDSEARPELMKELGFERVPTLV 77
Query: 71 FI 72
FI
Sbjct: 78 FI 79
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 23 CPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDS 82
C F + E+ + + F + ++ + + ++ L ++ T P +++ G+ IGG D
Sbjct: 31 CGFSKQMVEILHKHNIQFSSFDIFSDEE---VRQGLKAYSSWPTYPQLYVSGELIGGLDI 87
Query: 83 TTAL 86
L
Sbjct: 88 IKEL 91
>pdb|3IR4|A Chain A, 1.2 Angstrom Crystal Structure Of The Glutaredoxin 2
(Grxb) From Salmonella Typhimurium In Complex With
Glutathione
Length = 218
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 12 SNSVVVFSKTLCPFCVSVKELF--QQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVP 68
SN+ ++ CPFCV + +F + + V ++ D E+ + GQK VP
Sbjct: 1 SNAXKLYIYDHCPFCVKARXIFGLKNIPVELNVLQNDDEATPT-------RXIGQKXVP 52
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T64|B Chain B, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T67|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Ms-344
pdb|1T69|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Saha
pdb|1VKG|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1VKG|B Chain B, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1W22|A Chain A, Crystal Structure Of Inhibited Human Hdac8
pdb|1W22|B Chain B, Crystal Structure Of Inhibited Human Hdac8
Length = 377
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAK 104
+GQ VP +++ CDS + + +V L EA A+ K
Sbjct: 10 SGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHK 52
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant
pdb|3EZP|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101n Variant
Length = 388
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAK 104
+GQ VP +++ CDS + + +V L EA A+ K
Sbjct: 10 SGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHK 52
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
pdb|3SFH|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
Length = 378
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAK 104
+GQ VP +++ CDS + + +V L EA A+ K
Sbjct: 11 SGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHK 53
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ4|B Chain B, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ6|A Chain A, Crystal Structure Of D101l Fe2+ Hdac8 Complexed With M344
pdb|3MZ7|A Chain A, Crystal Structure Of D101l Co2+ Hdac8 Complexed With M344
Length = 389
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAK 104
+GQ VP +++ CDS + + +V L EA A+ K
Sbjct: 10 SGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHK 52
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3MZ3|B Chain B, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3RQD|A Chain A, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
pdb|3RQD|B Chain B, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
Length = 389
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAK 104
+GQ VP +++ CDS + + +V L EA A+ K
Sbjct: 10 SGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHK 52
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F0R|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
Length = 388
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAK 104
+GQ VP +++ CDS + + +V L EA A+ K
Sbjct: 10 SGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHK 52
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant
pdb|3EZT|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101e Variant
Length = 388
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAK 104
+GQ VP +++ CDS + + +V L EA A+ K
Sbjct: 10 SGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHK 52
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant
Length = 388
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAK 104
+GQ VP +++ CDS + + +V L EA A+ K
Sbjct: 10 SGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHK 52
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex
pdb|2V5W|B Chain B, Crystal Structure Of Hdac8-Substrate Complex
Length = 388
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAK 104
+GQ VP +++ CDS + + +V L EA A+ K
Sbjct: 10 SGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHK 52
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant.
pdb|3F06|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101a Variant
Length = 388
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAK 104
+GQ VP +++ CDS + + +V L EA A+ K
Sbjct: 10 SGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHK 52
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|B Chain B, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|C Chain C, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|D Chain D, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate
Length = 388
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAK 104
+GQ VP +++ CDS + + +V L EA A+ K
Sbjct: 10 SGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHK 52
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex
pdb|2V5X|B Chain B, Crystal Structure Of Hdac8-Inhibitor Complex
Length = 388
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 62 TGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAK 104
+GQ VP +++ CDS + + +V L EA A+ K
Sbjct: 10 SGQSLVPVYIYSPEYVSMCDSLAKIPKRADMVHSLIEAYALHK 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,861,817
Number of Sequences: 62578
Number of extensions: 102676
Number of successful extensions: 338
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 60
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)