Query 033962
Match_columns 107
No_of_seqs 143 out of 1226
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03050 glutaredoxin; Provisi 100.0 7.8E-31 1.7E-35 157.4 12.7 102 1-102 1-105 (108)
2 TIGR02189 GlrX-like_plant Glut 100.0 1.9E-30 4.1E-35 153.7 10.9 96 7-102 2-97 (99)
3 PRK10824 glutaredoxin-4; Provi 100.0 1.5E-28 3.3E-33 148.4 11.0 98 3-103 5-107 (115)
4 KOG1752 Glutaredoxin and relat 100.0 5.8E-28 1.3E-32 143.3 11.7 102 1-102 2-103 (104)
5 TIGR00365 monothiol glutaredox 99.9 5E-27 1.1E-31 138.6 11.2 91 3-96 2-97 (97)
6 cd03028 GRX_PICOT_like Glutare 99.9 4.9E-25 1.1E-29 128.5 9.8 85 6-93 1-90 (90)
7 PRK10638 glutaredoxin 3; Provi 99.9 1.3E-24 2.7E-29 125.0 10.7 82 13-97 2-83 (83)
8 TIGR02181 GRX_bact Glutaredoxi 99.9 1.1E-24 2.4E-29 123.9 9.5 79 15-96 1-79 (79)
9 PTZ00062 glutaredoxin; Provisi 99.9 9.8E-24 2.1E-28 138.8 11.0 94 3-99 103-201 (204)
10 TIGR02180 GRX_euk Glutaredoxin 99.9 1.1E-23 2.3E-28 120.7 9.3 82 15-96 1-84 (84)
11 cd03419 GRX_GRXh_1_2_like Glut 99.9 3.1E-23 6.7E-28 118.4 9.3 81 14-94 1-81 (82)
12 cd03031 GRX_GRX_like Glutaredo 99.9 8.9E-23 1.9E-27 128.1 10.9 85 14-101 1-95 (147)
13 cd03418 GRX_GRXb_1_3_like Glut 99.9 1.1E-22 2.4E-27 114.4 10.2 74 14-90 1-75 (75)
14 cd03027 GRX_DEP Glutaredoxin ( 99.9 1.3E-22 2.8E-27 113.9 8.9 71 14-87 2-72 (73)
15 COG0278 Glutaredoxin-related p 99.9 1.9E-22 4.2E-27 116.9 9.6 95 3-100 5-105 (105)
16 COG0695 GrxC Glutaredoxin and 99.9 1.7E-22 3.7E-27 115.3 9.1 78 14-92 2-79 (80)
17 TIGR02190 GlrX-dom Glutaredoxi 99.9 3.3E-22 7.2E-27 113.9 8.6 74 10-87 5-78 (79)
18 cd03029 GRX_hybridPRX5 Glutare 99.9 1.1E-21 2.3E-26 109.9 9.2 70 14-87 2-71 (72)
19 PRK12759 bifunctional gluaredo 99.9 5.6E-21 1.2E-25 137.1 10.1 91 13-105 2-97 (410)
20 PRK11200 grxA glutaredoxin 1; 99.8 1.4E-20 3E-25 108.5 9.4 72 14-88 2-80 (85)
21 TIGR02183 GRXA Glutaredoxin, G 99.8 1.3E-20 2.9E-25 108.9 9.1 73 15-90 2-81 (86)
22 cd02066 GRX_family Glutaredoxi 99.8 3.2E-20 7E-25 102.6 9.5 71 14-87 1-71 (72)
23 PF00462 Glutaredoxin: Glutare 99.8 5.3E-20 1.2E-24 99.6 7.8 60 15-77 1-60 (60)
24 PRK10329 glutaredoxin-like pro 99.8 2.7E-18 5.8E-23 98.2 8.3 65 14-82 2-66 (81)
25 TIGR02194 GlrX_NrdH Glutaredox 99.8 2.8E-18 6E-23 96.0 7.7 64 15-82 1-65 (72)
26 KOG0911 Glutaredoxin-related p 99.8 5.7E-18 1.2E-22 111.2 9.7 92 5-99 131-227 (227)
27 cd03030 GRX_SH3BGR Glutaredoxi 99.7 1.4E-17 3.1E-22 97.1 8.8 80 15-97 2-91 (92)
28 TIGR02196 GlrX_YruB Glutaredox 99.7 2.6E-17 5.7E-22 91.4 7.7 65 14-81 1-65 (74)
29 cd02976 NrdH NrdH-redoxin (Nrd 99.7 8.1E-16 1.7E-20 85.2 7.8 66 14-82 1-66 (73)
30 TIGR02200 GlrX_actino Glutared 99.6 1.3E-15 2.8E-20 85.5 7.9 65 14-81 1-67 (77)
31 cd03036 ArsC_like Arsenate Red 99.6 5.2E-16 1.1E-20 93.6 3.2 92 15-106 1-94 (111)
32 cd02973 TRX_GRX_like Thioredox 99.6 8.6E-15 1.9E-19 80.4 6.7 59 14-79 2-65 (67)
33 cd02977 ArsC_family Arsenate R 99.6 1.1E-15 2.5E-20 91.1 3.2 91 15-106 1-93 (105)
34 PRK01655 spxA transcriptional 99.5 1.9E-15 4E-20 93.6 2.2 92 15-106 2-93 (131)
35 PRK13344 spxA transcriptional 99.5 4.6E-15 1E-19 91.9 3.9 91 15-106 2-93 (132)
36 TIGR01617 arsC_related transcr 99.5 9.2E-15 2E-19 88.9 4.9 92 15-106 1-94 (117)
37 PRK12559 transcriptional regul 99.5 3.9E-15 8.4E-20 92.1 2.8 92 15-106 2-93 (131)
38 cd03035 ArsC_Yffb Arsenate Red 99.5 1E-14 2.2E-19 87.2 3.5 90 15-106 1-91 (105)
39 cd03041 GST_N_2GST_N GST_N fam 99.5 2.8E-13 6E-18 76.5 9.1 72 15-89 2-75 (77)
40 cd03032 ArsC_Spx Arsenate Redu 99.5 9.1E-15 2E-19 88.6 2.6 92 15-106 2-93 (115)
41 PRK10026 arsenate reductase; P 99.5 1.9E-14 4.2E-19 89.8 3.1 94 13-106 2-95 (141)
42 KOG2824 Glutaredoxin-related p 99.5 2.3E-13 4.9E-18 91.9 8.0 86 12-100 130-225 (281)
43 cd03033 ArsC_15kD Arsenate Red 99.5 2E-14 4.4E-19 86.9 2.1 91 14-106 1-91 (113)
44 PF04908 SH3BGR: SH3-binding, 99.5 1.6E-12 3.4E-17 76.6 9.5 81 14-97 2-97 (99)
45 cd03034 ArsC_ArsC Arsenate Red 99.4 6E-14 1.3E-18 84.7 2.3 92 15-106 1-92 (112)
46 cd03040 GST_N_mPGES2 GST_N fam 99.4 3E-12 6.5E-17 72.0 9.1 70 14-89 1-74 (77)
47 cd00570 GST_N_family Glutathio 99.4 1.8E-12 3.9E-17 70.5 8.0 70 15-87 1-70 (71)
48 cd03037 GST_N_GRX2 GST_N famil 99.4 2.1E-12 4.5E-17 71.7 7.6 69 15-88 1-70 (71)
49 TIGR00014 arsC arsenate reduct 99.4 1.2E-13 2.5E-18 83.7 2.4 92 15-106 1-93 (114)
50 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 2.1E-12 4.4E-17 75.0 7.1 69 4-79 5-78 (89)
51 TIGR01616 nitro_assoc nitrogen 99.4 2.4E-13 5.2E-18 83.6 3.1 91 14-106 2-92 (126)
52 COG1393 ArsC Arsenate reductas 99.4 3.2E-13 6.9E-18 82.0 2.9 93 14-106 2-94 (117)
53 PRK10853 putative reductase; P 99.4 6.5E-13 1.4E-17 80.8 4.2 90 15-106 2-93 (118)
54 cd03060 GST_N_Omega_like GST_N 99.4 1.5E-11 3.3E-16 68.2 8.6 67 16-86 2-69 (71)
55 cd03059 GST_N_SspA GST_N famil 99.3 2E-11 4.4E-16 67.7 8.8 71 15-89 1-71 (73)
56 cd03051 GST_N_GTT2_like GST_N 99.3 1.8E-11 3.9E-16 67.9 6.7 72 15-87 1-73 (74)
57 cd03055 GST_N_Omega GST_N fami 99.3 6E-11 1.3E-15 68.7 9.0 72 12-87 16-88 (89)
58 PF13417 GST_N_3: Glutathione 99.3 5.7E-11 1.2E-15 66.6 8.5 69 17-89 1-69 (75)
59 cd03045 GST_N_Delta_Epsilon GS 99.3 3.9E-11 8.5E-16 66.8 7.7 73 15-88 1-73 (74)
60 TIGR00411 redox_disulf_1 small 99.3 3.7E-11 8.1E-16 68.0 7.7 55 14-75 2-62 (82)
61 PHA02125 thioredoxin-like prot 99.2 7.9E-11 1.7E-15 66.2 7.5 55 15-77 2-56 (75)
62 PF03960 ArsC: ArsC family; I 99.2 4.6E-12 1E-16 76.2 1.2 89 18-106 1-90 (110)
63 cd02975 PfPDO_like_N Pyrococcu 99.2 3.4E-11 7.3E-16 72.7 4.7 58 8-72 18-81 (113)
64 cd03056 GST_N_4 GST_N family, 99.2 2.3E-10 4.9E-15 63.3 7.7 72 15-87 1-72 (73)
65 TIGR00412 redox_disulf_2 small 99.2 1.5E-10 3.2E-15 65.3 6.6 54 15-77 3-60 (76)
66 TIGR01295 PedC_BrcD bacterioci 99.1 3.7E-10 7.9E-15 69.1 8.0 75 6-80 16-106 (122)
67 cd03052 GST_N_GDAP1 GST_N fami 99.1 5.8E-10 1.3E-14 62.3 7.2 72 15-87 1-72 (73)
68 PF05768 DUF836: Glutaredoxin- 99.1 5.9E-10 1.3E-14 63.5 6.9 53 14-74 1-57 (81)
69 cd03058 GST_N_Tau GST_N family 99.1 2.3E-09 4.9E-14 59.7 8.6 71 15-89 1-72 (74)
70 KOG3029 Glutathione S-transfer 99.1 9.8E-10 2.1E-14 75.0 8.1 81 14-100 90-176 (370)
71 cd03053 GST_N_Phi GST_N family 99.1 2.7E-09 5.8E-14 59.6 8.5 74 15-89 2-75 (76)
72 cd03061 GST_N_CLIC GST_N famil 99.1 1.8E-09 4E-14 62.8 7.9 65 21-89 20-84 (91)
73 cd02949 TRX_NTR TRX domain, no 99.1 1.1E-09 2.3E-14 64.2 6.9 60 15-81 17-84 (97)
74 PHA02278 thioredoxin-like prot 99.0 3.6E-09 7.8E-14 63.0 8.8 74 4-80 5-88 (103)
75 cd03054 GST_N_Metaxin GST_N fa 99.0 3.5E-09 7.5E-14 58.7 7.9 58 21-89 14-71 (72)
76 cd02954 DIM1 Dim1 family; Dim1 99.0 3.1E-09 6.8E-14 64.2 8.2 58 15-79 18-83 (114)
77 COG3118 Thioredoxin domain-con 99.0 1E-09 2.2E-14 75.4 5.5 81 10-100 41-130 (304)
78 cd03049 GST_N_3 GST_N family, 99.0 6.9E-09 1.5E-13 57.6 7.8 69 15-87 1-72 (73)
79 KOG0910 Thioredoxin-like prote 99.0 1.1E-09 2.3E-14 68.6 4.4 59 12-77 61-128 (150)
80 TIGR02187 GlrX_arch Glutaredox 98.9 3.8E-09 8.2E-14 70.2 6.9 61 7-74 129-194 (215)
81 PF00085 Thioredoxin: Thioredo 98.9 3.5E-09 7.7E-14 61.8 6.0 74 15-98 21-102 (103)
82 cd03042 GST_N_Zeta GST_N famil 98.9 8.7E-09 1.9E-13 56.9 7.0 72 15-87 1-72 (73)
83 cd02989 Phd_like_TxnDC9 Phosdu 98.9 2.3E-08 5E-13 60.3 8.9 70 5-81 14-92 (113)
84 cd02994 PDI_a_TMX PDIa family, 98.9 7.4E-09 1.6E-13 60.8 6.6 64 5-75 10-82 (101)
85 cd02953 DsbDgamma DsbD gamma f 98.9 3.3E-09 7.1E-14 62.7 5.1 64 5-71 3-77 (104)
86 cd02956 ybbN ybbN protein fami 98.9 6.8E-09 1.5E-13 60.3 6.4 59 15-78 16-80 (96)
87 PF13192 Thioredoxin_3: Thiore 98.9 1.9E-08 4E-13 56.6 7.8 55 14-77 2-60 (76)
88 cd03076 GST_N_Pi GST_N family, 98.9 2.9E-08 6.3E-13 55.3 8.3 71 14-88 1-71 (73)
89 PF13409 GST_N_2: Glutathione 98.9 8.3E-09 1.8E-13 57.1 5.5 68 22-89 1-69 (70)
90 PRK09481 sspA stringent starva 98.9 2.8E-08 6.2E-13 65.6 9.1 72 14-89 10-81 (211)
91 TIGR02187 GlrX_arch Glutaredox 98.9 8.2E-09 1.8E-13 68.6 6.2 67 6-77 14-90 (215)
92 cd03050 GST_N_Theta GST_N fami 98.9 3.7E-08 8.1E-13 55.0 8.0 74 15-89 1-74 (76)
93 cd03039 GST_N_Sigma_like GST_N 98.8 3.2E-08 6.9E-13 54.8 7.5 70 15-87 1-70 (72)
94 cd02963 TRX_DnaJ TRX domain, D 98.8 1.3E-08 2.8E-13 61.1 6.3 58 15-79 28-94 (111)
95 cd03080 GST_N_Metaxin_like GST 98.8 3.6E-08 7.9E-13 55.1 7.7 64 15-89 2-72 (75)
96 PRK10996 thioredoxin 2; Provis 98.8 2.2E-08 4.7E-13 62.5 7.5 84 5-98 44-137 (139)
97 cd02985 TRX_CDSP32 TRX family, 98.8 3.7E-08 8E-13 58.3 7.9 62 15-80 19-87 (103)
98 PTZ00051 thioredoxin; Provisio 98.8 6.7E-08 1.5E-12 56.3 8.9 70 4-80 9-87 (98)
99 COG4545 Glutaredoxin-related p 98.8 2.2E-08 4.7E-13 55.6 6.2 64 15-79 4-78 (85)
100 PRK09381 trxA thioredoxin; Pro 98.8 1.7E-08 3.6E-13 60.1 6.3 74 15-98 25-106 (109)
101 PRK15317 alkyl hydroperoxide r 98.8 1.6E-08 3.4E-13 74.9 7.4 69 4-79 109-182 (517)
102 cd02947 TRX_family TRX family; 98.8 2E-08 4.3E-13 56.9 6.1 60 14-80 13-79 (93)
103 cd03038 GST_N_etherase_LigE GS 98.8 2.6E-08 5.6E-13 56.8 6.4 67 21-89 14-81 (84)
104 cd03048 GST_N_Ure2p_like GST_N 98.8 6.4E-08 1.4E-12 54.7 7.7 73 15-89 2-77 (81)
105 TIGR02182 GRXB Glutaredoxin, G 98.8 3.3E-08 7.2E-13 65.4 7.4 69 16-89 1-70 (209)
106 cd02957 Phd_like Phosducin (Ph 98.8 5.5E-08 1.2E-12 58.5 7.7 64 15-86 28-98 (113)
107 TIGR03143 AhpF_homolog putativ 98.8 2.8E-08 6.1E-13 74.2 7.5 67 4-77 469-540 (555)
108 cd02950 TxlA TRX-like protein 98.8 2.2E-08 4.8E-13 62.7 5.9 59 15-78 24-91 (142)
109 TIGR03140 AhpF alkyl hydropero 98.8 3.5E-08 7.6E-13 73.1 7.4 69 4-79 110-183 (515)
110 cd02987 Phd_like_Phd Phosducin 98.7 4.1E-08 8.9E-13 63.5 6.3 80 15-100 87-175 (175)
111 cd02965 HyaE HyaE family; HyaE 98.7 6.5E-08 1.4E-12 58.2 6.7 62 13-81 29-100 (111)
112 TIGR01068 thioredoxin thioredo 98.7 5.9E-08 1.3E-12 56.3 6.4 58 15-79 18-83 (101)
113 PRK10387 glutaredoxin 2; Provi 98.7 7.6E-08 1.6E-12 63.2 7.6 71 15-90 1-72 (210)
114 cd02948 TRX_NDPK TRX domain, T 98.7 1.7E-07 3.8E-12 55.3 8.4 66 5-78 9-85 (102)
115 cd03044 GST_N_EF1Bgamma GST_N 98.7 9.9E-08 2.1E-12 53.3 7.0 71 16-88 2-73 (75)
116 PF13098 Thioredoxin_2: Thiore 98.7 3.1E-08 6.6E-13 59.1 4.7 64 14-77 8-96 (112)
117 cd02951 SoxW SoxW family; SoxW 98.7 6.1E-08 1.3E-12 59.1 6.1 68 5-72 5-90 (125)
118 cd03047 GST_N_2 GST_N family, 98.7 2.3E-07 5E-12 51.5 7.6 72 15-87 1-72 (73)
119 cd03000 PDI_a_TMX3 PDIa family 98.7 5.8E-08 1.3E-12 57.4 5.4 59 6-71 9-77 (104)
120 cd02959 ERp19 Endoplasmic reti 98.7 4.1E-08 8.8E-13 59.6 4.7 58 15-78 23-91 (117)
121 PRK15113 glutathione S-transfe 98.7 2E-07 4.4E-12 61.7 8.5 76 12-88 3-80 (214)
122 cd03065 PDI_b_Calsequestrin_N 98.7 7.4E-08 1.6E-12 58.8 5.7 73 15-98 31-117 (120)
123 cd02999 PDI_a_ERp44_like PDIa 98.7 1.9E-07 4.1E-12 55.1 7.2 51 15-71 22-77 (100)
124 cd02984 TRX_PICOT TRX domain, 98.6 2E-07 4.3E-12 54.1 6.9 60 15-79 18-83 (97)
125 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 1.3E-07 2.8E-12 55.5 6.1 65 6-77 11-85 (101)
126 cd02962 TMX2 TMX2 family; comp 98.6 3.4E-07 7.4E-12 58.0 8.1 60 15-81 51-125 (152)
127 cd02996 PDI_a_ERp44 PDIa famil 98.6 3.3E-07 7.1E-12 54.5 7.6 64 5-75 10-89 (108)
128 KOG0406 Glutathione S-transfer 98.6 4.2E-07 9.2E-12 60.9 8.8 73 13-89 8-81 (231)
129 cd03057 GST_N_Beta GST_N famil 98.6 3.5E-07 7.7E-12 51.1 7.1 72 15-88 1-73 (77)
130 PRK10877 protein disulfide iso 98.6 5.9E-07 1.3E-11 60.5 9.1 70 13-82 109-219 (232)
131 cd02986 DLP Dim1 family, Dim1- 98.6 4.1E-07 8.9E-12 54.9 7.4 59 12-77 14-81 (114)
132 cd03005 PDI_a_ERp46 PDIa famil 98.6 4.6E-07 9.9E-12 52.9 7.5 66 6-78 10-87 (102)
133 cd03006 PDI_a_EFP1_N PDIa fami 98.6 3.3E-07 7.2E-12 55.4 6.9 55 15-76 33-96 (113)
134 KOG0907 Thioredoxin [Posttrans 98.6 1.5E-07 3.3E-12 56.2 5.2 56 16-78 26-88 (106)
135 cd03004 PDI_a_ERdj5_C PDIa fam 98.6 3.6E-07 7.8E-12 53.8 6.6 53 15-74 23-83 (104)
136 TIGR01126 pdi_dom protein disu 98.6 3.6E-07 7.8E-12 53.2 6.5 51 15-72 17-75 (102)
137 TIGR00862 O-ClC intracellular 98.6 1E-06 2.2E-11 59.6 9.3 65 21-89 17-81 (236)
138 cd02988 Phd_like_VIAF Phosduci 98.5 3.4E-07 7.4E-12 60.1 6.6 76 15-100 106-192 (192)
139 cd01659 TRX_superfamily Thiore 98.5 3.1E-07 6.8E-12 47.9 5.3 56 15-74 1-61 (69)
140 cd02952 TRP14_like Human TRX-r 98.5 4.2E-07 9E-12 55.4 5.8 58 15-72 25-96 (119)
141 cd03046 GST_N_GTT1_like GST_N 98.5 1.3E-06 2.8E-11 48.5 7.1 71 16-88 2-72 (76)
142 PLN02473 glutathione S-transfe 98.5 1.1E-06 2.4E-11 57.9 7.8 74 14-88 2-75 (214)
143 cd03002 PDI_a_MPD1_like PDI fa 98.5 5.7E-07 1.2E-11 53.2 5.8 54 14-72 21-80 (109)
144 PTZ00443 Thioredoxin domain-co 98.4 6.1E-07 1.3E-11 60.2 6.0 57 14-77 55-119 (224)
145 PLN02378 glutathione S-transfe 98.4 1E-06 2.2E-11 58.4 7.0 65 21-89 18-82 (213)
146 cd02955 SSP411 TRX domain, SSP 98.4 3.6E-06 7.7E-11 51.7 8.9 75 5-80 7-97 (124)
147 cd02997 PDI_a_PDIR PDIa family 98.4 1.3E-06 2.7E-11 51.1 6.4 59 15-78 21-89 (104)
148 cd03043 GST_N_1 GST_N family, 98.4 2.9E-06 6.2E-11 47.2 7.5 66 20-87 7-72 (73)
149 cd03001 PDI_a_P5 PDIa family, 98.4 1.8E-06 3.9E-11 50.4 6.6 50 15-71 22-77 (103)
150 PF14595 Thioredoxin_9: Thiore 98.4 2.2E-07 4.7E-12 57.4 2.6 72 5-80 35-114 (129)
151 PLN02817 glutathione dehydroge 98.4 2.3E-06 5.1E-11 58.7 7.8 66 20-89 70-135 (265)
152 cd02961 PDI_a_family Protein D 98.4 3.3E-06 7.1E-11 48.5 7.2 63 5-72 7-77 (101)
153 cd02993 PDI_a_APS_reductase PD 98.4 3E-06 6.5E-11 50.5 7.1 53 14-71 24-83 (109)
154 TIGR01262 maiA maleylacetoacet 98.4 1.3E-06 2.9E-11 57.3 5.9 74 16-89 1-74 (210)
155 COG0625 Gst Glutathione S-tran 98.3 2.4E-06 5.2E-11 56.3 6.4 75 15-91 1-76 (211)
156 PTZ00062 glutaredoxin; Provisi 98.3 2.6E-06 5.7E-11 56.4 6.4 66 3-81 6-79 (204)
157 PLN00410 U5 snRNP protein, DIM 98.3 2.1E-06 4.5E-11 53.8 5.4 53 16-75 28-89 (142)
158 cd02998 PDI_a_ERp38 PDIa famil 98.3 3.6E-06 7.8E-11 49.1 5.8 54 15-72 22-81 (105)
159 TIGR02740 TraF-like TraF-like 98.3 4.7E-06 1E-10 57.4 7.1 67 6-72 161-235 (271)
160 KOG4023 Uncharacterized conser 98.2 1.3E-06 2.8E-11 51.0 3.4 90 13-102 2-102 (108)
161 cd03009 TryX_like_TryX_NRX Try 98.2 8.3E-06 1.8E-10 49.9 7.1 65 14-78 21-114 (131)
162 COG2999 GrxB Glutaredoxin 2 [P 98.2 2.1E-06 4.5E-11 55.5 4.2 68 16-88 2-70 (215)
163 PF13728 TraF: F plasmid trans 98.2 9.4E-06 2E-10 54.2 7.4 69 4-72 113-189 (215)
164 PRK10357 putative glutathione 98.2 8.3E-06 1.8E-10 53.3 7.0 71 15-89 1-72 (202)
165 cd03008 TryX_like_RdCVF Trypar 98.2 1.9E-05 4.2E-10 49.7 8.2 64 15-78 29-127 (146)
166 cd02964 TryX_like_family Trypa 98.2 2.1E-05 4.6E-10 48.3 7.9 64 15-78 21-114 (132)
167 PRK13972 GSH-dependent disulfi 98.2 1.7E-05 3.6E-10 52.4 7.8 73 15-89 2-81 (215)
168 cd03077 GST_N_Alpha GST_N fami 98.1 4.3E-05 9.3E-10 43.0 8.3 70 15-88 2-73 (79)
169 TIGR00385 dsbE periplasmic pro 98.1 6.4E-06 1.4E-10 53.0 5.3 32 15-46 67-101 (173)
170 cd03020 DsbA_DsbC_DsbG DsbA fa 98.1 3.1E-05 6.7E-10 50.7 8.3 71 12-82 78-189 (197)
171 cd02995 PDI_a_PDI_a'_C PDIa fa 98.1 9.9E-06 2.2E-10 47.2 5.2 53 15-75 22-84 (104)
172 PTZ00102 disulphide isomerase; 98.1 1.2E-05 2.7E-10 58.7 6.8 65 6-77 42-119 (477)
173 PRK15412 thiol:disulfide inter 98.1 1.9E-05 4.2E-10 51.3 7.0 34 14-47 71-107 (185)
174 PLN02395 glutathione S-transfe 98.1 2.6E-05 5.7E-10 51.3 7.6 74 14-89 2-75 (215)
175 PRK13728 conjugal transfer pro 98.1 1.7E-05 3.6E-10 51.7 6.4 62 14-75 72-148 (181)
176 cd02992 PDI_a_QSOX PDIa family 98.1 1.3E-05 2.9E-10 48.2 5.6 53 15-72 23-84 (114)
177 TIGR01130 ER_PDI_fam protein d 98.1 1.4E-05 3E-10 57.9 6.6 66 4-76 9-87 (462)
178 TIGR02738 TrbB type-F conjugat 98.1 2.6E-05 5.7E-10 49.5 6.9 62 11-72 50-124 (153)
179 KOG0190 Protein disulfide isom 98.0 1.6E-05 3.4E-10 58.6 5.9 67 5-76 34-111 (493)
180 PRK00293 dipZ thiol:disulfide 98.0 1.5E-05 3.2E-10 60.1 5.9 59 15-76 478-547 (571)
181 PRK11752 putative S-transferas 98.0 4.7E-05 1E-09 52.1 7.8 77 11-89 41-127 (264)
182 TIGR00424 APS_reduc 5'-adenyly 98.0 3.6E-05 7.8E-10 56.7 6.8 56 15-75 375-439 (463)
183 PF02798 GST_N: Glutathione S- 97.9 0.00013 2.9E-09 40.7 7.4 71 14-87 2-74 (76)
184 cd03079 GST_N_Metaxin2 GST_N f 97.9 0.00011 2.3E-09 41.2 6.6 58 21-88 15-72 (74)
185 cd03010 TlpA_like_DsbE TlpA-li 97.9 0.00014 3.1E-09 44.0 7.7 23 14-36 28-50 (127)
186 KOG0868 Glutathione S-transfer 97.9 4.4E-05 9.5E-10 49.5 5.3 75 14-90 5-81 (217)
187 PRK03147 thiol-disulfide oxido 97.8 8.7E-05 1.9E-09 47.2 6.6 62 14-77 64-152 (173)
188 PRK10542 glutathionine S-trans 97.8 8.7E-05 1.9E-09 48.3 6.4 73 16-89 2-75 (201)
189 PLN02309 5'-adenylylsulfate re 97.8 7.7E-05 1.7E-09 54.9 6.6 52 14-71 368-427 (457)
190 PF13905 Thioredoxin_8: Thiore 97.8 0.00025 5.4E-09 40.8 7.6 41 15-55 5-51 (95)
191 cd03075 GST_N_Mu GST_N family, 97.8 0.00036 7.7E-09 39.6 8.1 72 17-88 3-79 (82)
192 TIGR02739 TraF type-F conjugat 97.8 0.00013 2.7E-09 50.0 7.2 69 4-72 143-219 (256)
193 PTZ00102 disulphide isomerase; 97.8 3.5E-05 7.5E-10 56.4 4.8 77 15-101 379-466 (477)
194 cd02966 TlpA_like_family TlpA- 97.8 0.00017 3.6E-09 42.0 6.3 36 13-48 21-63 (116)
195 KOG1422 Intracellular Cl- chan 97.7 0.00024 5.1E-09 47.1 7.3 64 21-88 19-82 (221)
196 cd02982 PDI_b'_family Protein 97.7 0.00011 2.3E-09 42.9 5.2 52 14-72 15-74 (103)
197 cd03078 GST_N_Metaxin1_like GS 97.7 0.00034 7.3E-09 38.9 7.0 58 21-89 14-71 (73)
198 cd02972 DsbA_family DsbA famil 97.7 0.00019 4.2E-09 40.7 6.2 60 15-74 1-91 (98)
199 cd03007 PDI_a_ERp29_N PDIa fam 97.7 0.00041 8.9E-09 42.1 7.7 69 5-75 10-91 (116)
200 KOG0908 Thioredoxin-like prote 97.7 6.6E-05 1.4E-09 51.0 4.5 57 15-78 25-88 (288)
201 KOG3425 Uncharacterized conser 97.7 6.9E-05 1.5E-09 45.4 4.1 52 21-72 43-101 (128)
202 cd03023 DsbA_Com1_like DsbA fa 97.7 0.00044 9.5E-09 42.8 8.0 24 12-35 6-29 (154)
203 PRK11657 dsbG disulfide isomer 97.7 0.00037 7.9E-09 47.6 8.0 31 14-44 120-154 (251)
204 PRK13703 conjugal pilus assemb 97.7 0.00015 3.2E-09 49.5 6.0 69 4-72 136-212 (248)
205 TIGR02661 MauD methylamine deh 97.7 0.00029 6.4E-09 46.0 6.9 63 15-77 78-160 (189)
206 cd02958 UAS UAS family; UAS is 97.6 0.00031 6.8E-09 42.0 6.4 60 16-78 22-92 (114)
207 PRK14018 trifunctional thiored 97.6 5.6E-05 1.2E-09 56.4 3.6 22 15-36 60-81 (521)
208 cd03011 TlpA_like_ScsD_MtbDsbE 97.6 0.00012 2.5E-09 44.1 4.4 59 13-72 22-99 (123)
209 PF13462 Thioredoxin_4: Thiore 97.6 0.00045 9.8E-09 43.3 6.8 34 13-46 14-55 (162)
210 PF13899 Thioredoxin_7: Thiore 97.5 0.00032 6.8E-09 39.6 5.2 52 15-72 21-79 (82)
211 cd02967 mauD Methylamine utili 97.5 0.00024 5.2E-09 42.1 4.9 56 14-71 24-83 (114)
212 COG3019 Predicted metal-bindin 97.5 0.0008 1.7E-08 41.9 7.1 73 11-90 24-103 (149)
213 PTZ00057 glutathione s-transfe 97.5 0.00087 1.9E-08 44.0 7.8 74 14-89 4-81 (205)
214 KOG2501 Thioredoxin, nucleored 97.5 0.00098 2.1E-08 42.4 7.0 69 9-77 30-129 (157)
215 KOG0867 Glutathione S-transfer 97.4 0.00078 1.7E-08 45.2 6.9 75 14-89 2-76 (226)
216 KOG0912 Thiol-disulfide isomer 97.4 0.00034 7.4E-09 48.9 5.0 71 1-78 1-86 (375)
217 KOG4244 Failed axon connection 97.4 0.00088 1.9E-08 45.9 6.6 68 10-88 41-115 (281)
218 cd03019 DsbA_DsbA DsbA family, 97.4 0.0013 2.8E-08 41.9 7.1 24 12-35 16-39 (178)
219 cd02960 AGR Anterior Gradient 97.4 0.00066 1.4E-08 42.0 5.3 29 5-33 15-45 (130)
220 KOG4277 Uncharacterized conser 97.4 0.00019 4.2E-09 50.2 3.1 59 15-75 47-110 (468)
221 PF07315 DUF1462: Protein of u 97.3 0.0018 4E-08 37.3 6.4 66 16-81 1-82 (93)
222 cd03012 TlpA_like_DipZ_like Tl 97.3 0.0021 4.6E-08 39.0 7.1 22 14-35 26-47 (126)
223 PF06110 DUF953: Eukaryotic pr 97.3 0.00078 1.7E-08 41.1 4.9 49 21-72 36-95 (119)
224 PLN02919 haloacid dehalogenase 97.3 0.001 2.3E-08 53.6 6.8 22 15-36 424-445 (1057)
225 COG2143 Thioredoxin-related pr 97.2 0.0016 3.5E-08 41.5 6.0 65 15-79 46-131 (182)
226 PF06764 DUF1223: Protein of u 97.2 0.00081 1.7E-08 44.6 4.5 67 15-81 2-86 (202)
227 TIGR01130 ER_PDI_fam protein d 97.0 0.0013 2.9E-08 47.7 5.0 49 15-72 368-425 (462)
228 PF08534 Redoxin: Redoxin; In 97.0 0.006 1.3E-07 37.7 7.1 34 15-48 32-73 (146)
229 PF02114 Phosducin: Phosducin; 97.0 0.0018 3.9E-08 44.7 4.7 83 15-105 150-243 (265)
230 smart00594 UAS UAS domain. 96.9 0.01 2.3E-07 36.0 7.4 63 5-72 19-92 (122)
231 COG5494 Predicted thioredoxin/ 96.8 0.0081 1.8E-07 40.1 6.6 60 12-78 10-71 (265)
232 COG4837 Uncharacterized protei 96.8 0.015 3.1E-07 33.9 6.6 70 11-81 3-89 (106)
233 PF03190 Thioredox_DsbH: Prote 96.8 0.0052 1.1E-07 39.4 5.3 67 12-78 37-117 (163)
234 TIGR01626 ytfJ_HI0045 conserve 96.7 0.0065 1.4E-07 39.8 5.6 38 11-48 59-105 (184)
235 COG4232 Thiol:disulfide interc 96.7 0.0048 1E-07 46.5 5.5 80 14-99 476-567 (569)
236 cd02968 SCO SCO (an acronym fo 96.7 0.014 2.9E-07 35.8 6.7 59 12-71 23-92 (142)
237 KOG0190 Protein disulfide isom 96.6 0.0033 7.1E-08 46.7 4.4 25 15-39 388-412 (493)
238 PRK11509 hydrogenase-1 operon 96.6 0.009 1.9E-07 37.1 5.2 54 22-82 47-109 (132)
239 KOG1695 Glutathione S-transfer 96.4 0.031 6.7E-07 37.2 7.3 70 14-87 3-72 (206)
240 COG0526 TrxA Thiol-disulfide i 96.4 0.0093 2E-07 34.0 4.5 29 18-46 39-73 (127)
241 cd03017 PRX_BCP Peroxiredoxin 96.4 0.047 1E-06 33.3 7.7 20 14-33 26-46 (140)
242 PF06953 ArsD: Arsenical resis 96.3 0.013 2.8E-07 36.0 4.9 49 28-77 31-83 (123)
243 KOG4420 Uncharacterized conser 96.3 0.0026 5.6E-08 43.7 2.0 75 14-89 26-100 (325)
244 PF10568 Tom37: Outer mitochon 96.3 0.038 8.2E-07 30.7 6.4 55 22-87 13-71 (72)
245 PTZ00056 glutathione peroxidas 96.3 0.025 5.3E-07 37.3 6.6 32 15-46 43-81 (199)
246 KOG0191 Thioredoxin/protein di 96.2 0.011 2.3E-07 42.6 4.7 57 13-74 49-111 (383)
247 PLN02412 probable glutathione 96.1 0.032 6.9E-07 35.7 6.3 21 15-35 33-53 (167)
248 cd00340 GSH_Peroxidase Glutath 96.1 0.031 6.8E-07 35.0 6.0 21 14-35 25-45 (152)
249 PTZ00256 glutathione peroxidas 95.9 0.033 7.1E-07 36.1 5.8 19 16-34 46-64 (183)
250 PF00578 AhpC-TSA: AhpC/TSA fa 95.9 0.054 1.2E-06 32.2 6.4 34 14-47 28-69 (124)
251 cd02969 PRX_like1 Peroxiredoxi 95.9 0.077 1.7E-06 33.7 7.3 34 14-47 28-68 (171)
252 PLN02399 phospholipid hydroper 95.9 0.045 9.8E-07 37.2 6.5 33 14-46 102-141 (236)
253 COG3634 AhpF Alkyl hydroperoxi 95.8 0.019 4.2E-07 41.5 4.4 71 5-80 110-183 (520)
254 PF11009 DUF2847: Protein of u 95.7 0.18 3.9E-06 30.1 7.8 66 11-79 18-93 (105)
255 cd02970 PRX_like2 Peroxiredoxi 95.7 0.064 1.4E-06 32.9 6.2 53 15-72 27-87 (149)
256 PF04134 DUF393: Protein of un 95.6 0.052 1.1E-06 32.3 5.4 68 17-89 1-76 (114)
257 TIGR03143 AhpF_homolog putativ 95.6 0.046 1E-06 41.3 6.2 55 11-72 366-425 (555)
258 COG5429 Uncharacterized secret 95.6 0.012 2.7E-07 39.8 2.6 63 15-77 45-124 (261)
259 PHA03075 glutaredoxin-like pro 95.4 0.029 6.3E-07 34.0 3.7 33 13-45 3-35 (123)
260 cd03014 PRX_Atyp2cys Peroxired 95.4 0.12 2.5E-06 31.8 6.5 36 11-46 26-67 (143)
261 KOG1672 ATP binding protein [P 95.1 0.077 1.7E-06 35.1 5.1 90 6-102 78-180 (211)
262 cd02971 PRX_family Peroxiredox 95.1 0.18 3.9E-06 30.6 6.6 33 14-46 25-65 (140)
263 cd03018 PRX_AhpE_like Peroxire 95.1 0.21 4.6E-06 30.7 7.0 21 15-35 32-53 (149)
264 KOG0913 Thiol-disulfide isomer 94.9 0.0055 1.2E-07 41.4 -0.6 62 8-76 36-106 (248)
265 TIGR02540 gpx7 putative glutat 94.8 0.033 7E-07 34.9 2.9 19 15-33 26-44 (153)
266 PRK13190 putative peroxiredoxi 94.7 0.077 1.7E-06 35.0 4.6 30 18-47 35-71 (202)
267 cd03015 PRX_Typ2cys Peroxiredo 94.7 0.099 2.2E-06 33.4 4.9 33 15-47 33-73 (173)
268 KOG0191 Thioredoxin/protein di 94.6 0.11 2.3E-06 37.5 5.5 55 12-71 163-223 (383)
269 TIGR03137 AhpC peroxiredoxin. 94.6 0.11 2.3E-06 33.9 5.0 33 15-47 35-75 (187)
270 PF11287 DUF3088: Protein of u 94.2 0.25 5.5E-06 29.7 5.5 47 22-74 23-76 (112)
271 PRK00522 tpx lipid hydroperoxi 94.2 0.19 4.2E-06 32.0 5.4 22 14-35 47-69 (167)
272 COG1331 Highly conserved prote 93.4 0.27 5.9E-06 38.1 5.7 67 11-77 42-122 (667)
273 PRK10954 periplasmic protein d 93.4 0.1 2.2E-06 34.5 3.1 23 60-82 161-183 (207)
274 cd03016 PRX_1cys Peroxiredoxin 93.4 0.19 4.2E-06 33.1 4.4 31 17-47 32-69 (203)
275 KOG1731 FAD-dependent sulfhydr 92.8 0.037 8E-07 41.9 0.4 54 14-72 60-122 (606)
276 KOG0914 Thioredoxin-like prote 92.8 0.07 1.5E-06 36.0 1.7 63 15-78 148-219 (265)
277 PRK13599 putative peroxiredoxi 92.8 0.26 5.6E-06 33.0 4.4 31 17-47 35-72 (215)
278 PRK09437 bcp thioredoxin-depen 92.7 0.41 8.8E-06 29.8 5.0 16 14-29 33-49 (154)
279 PRK13189 peroxiredoxin; Provis 92.5 0.32 7E-06 32.6 4.6 31 17-47 42-79 (222)
280 PRK13191 putative peroxiredoxi 91.4 0.51 1.1E-05 31.5 4.5 32 17-48 40-78 (215)
281 COG2761 FrnE Predicted dithiol 91.2 0.72 1.6E-05 31.2 5.0 24 13-36 6-29 (225)
282 PRK15000 peroxidase; Provision 90.9 0.93 2E-05 29.9 5.4 35 12-46 34-77 (200)
283 cd05295 MDH_like Malate dehydr 90.6 0.77 1.7E-05 34.2 5.2 66 21-88 2-82 (452)
284 PF01323 DSBA: DSBA-like thior 90.6 0.33 7.2E-06 31.1 3.0 33 14-46 1-38 (193)
285 PRK10606 btuE putative glutath 90.5 2.2 4.9E-05 27.8 6.8 18 11-28 25-42 (183)
286 PRK10382 alkyl hydroperoxide r 90.1 0.79 1.7E-05 30.0 4.5 19 15-33 35-54 (187)
287 KOG3414 Component of the U4/U6 89.8 1.2 2.5E-05 27.6 4.7 53 18-77 30-90 (142)
288 cd03022 DsbA_HCCA_Iso DsbA fam 89.7 0.62 1.3E-05 29.8 3.8 25 60-84 161-185 (192)
289 KOG3171 Conserved phosducin-li 89.5 0.65 1.4E-05 31.4 3.7 81 18-104 166-255 (273)
290 PF09822 ABC_transp_aux: ABC-t 89.1 2.5 5.4E-05 29.0 6.5 62 4-68 18-90 (271)
291 PRK10954 periplasmic protein d 88.3 0.32 7E-06 32.1 1.7 20 12-31 38-57 (207)
292 COG1651 DsbG Protein-disulfide 88.0 2.8 6.2E-05 28.0 6.2 36 12-47 85-125 (244)
293 PTZ00137 2-Cys peroxiredoxin; 87.6 2.6 5.6E-05 29.2 5.8 37 11-47 97-142 (261)
294 PF02630 SCO1-SenC: SCO1/SenC; 86.9 3.3 7.2E-05 26.6 5.7 50 14-63 55-114 (174)
295 TIGR02654 circ_KaiB circadian 86.4 3 6.6E-05 24.0 4.7 65 14-85 5-81 (87)
296 PF10865 DUF2703: Domain of un 86.3 3.1 6.8E-05 25.4 5.0 48 22-77 14-72 (120)
297 PF01323 DSBA: DSBA-like thior 86.2 1.6 3.4E-05 27.9 4.0 26 59-84 160-186 (193)
298 PTZ00253 tryparedoxin peroxida 85.7 2.1 4.6E-05 28.0 4.5 34 15-48 40-81 (199)
299 PRK09301 circadian clock prote 85.7 3.2 6.9E-05 24.7 4.7 66 14-86 8-85 (103)
300 cd03025 DsbA_FrnE_like DsbA fa 85.5 0.61 1.3E-05 29.9 1.8 21 14-34 2-22 (193)
301 COG3011 Predicted thiol-disulf 85.0 7.3 0.00016 24.4 7.8 70 11-85 6-81 (137)
302 TIGR03759 conj_TIGR03759 integ 83.6 2.5 5.5E-05 28.1 4.0 43 12-54 109-151 (200)
303 cd02978 KaiB_like KaiB-like fa 83.6 3.1 6.7E-05 23.1 3.8 51 14-71 3-60 (72)
304 PF14437 MafB19-deam: MafB19-l 83.3 5.4 0.00012 25.3 5.2 32 12-43 99-132 (146)
305 cd02991 UAS_ETEA UAS family, E 83.2 7.7 0.00017 23.3 7.0 63 4-72 8-83 (116)
306 PF07449 HyaE: Hydrogenase-1 e 81.2 1.9 4.2E-05 25.8 2.6 69 13-86 27-104 (107)
307 cd03022 DsbA_HCCA_Iso DsbA fam 80.9 1.9 4E-05 27.6 2.7 28 15-42 1-32 (192)
308 TIGR01689 EcbF-BcbF capsule bi 80.7 5.9 0.00013 24.3 4.7 37 12-48 40-88 (126)
309 cd02974 AhpF_NTD_N Alkyl hydro 80.7 3.3 7.3E-05 24.0 3.5 28 8-36 16-43 (94)
310 COG1999 Uncharacterized protei 80.6 8.5 0.00018 25.6 5.8 41 14-54 70-121 (207)
311 cd03013 PRX5_like Peroxiredoxi 80.0 12 0.00027 23.4 6.9 56 11-70 28-95 (155)
312 cd03024 DsbA_FrnE DsbA family, 79.9 5 0.00011 25.8 4.5 22 60-81 169-191 (201)
313 PF03227 GILT: Gamma interfero 79.4 2.2 4.8E-05 25.3 2.5 15 14-28 2-16 (108)
314 COG1651 DsbG Protein-disulfide 78.8 3.3 7.2E-05 27.7 3.5 25 58-82 207-231 (244)
315 PRK09437 bcp thioredoxin-depen 78.1 13 0.00029 22.8 6.7 32 12-44 62-93 (154)
316 PF09413 DUF2007: Domain of un 77.1 3.8 8.3E-05 21.8 2.8 53 15-75 1-53 (67)
317 PF12689 Acid_PPase: Acid Phos 77.1 15 0.00032 23.8 5.9 62 13-75 60-133 (169)
318 PLN02907 glutamate-tRNA ligase 76.1 18 0.00039 28.8 7.1 58 15-89 3-61 (722)
319 PF06053 DUF929: Domain of unk 72.8 13 0.00028 25.7 5.0 24 15-38 62-89 (249)
320 KOG3027 Mitochondrial outer me 72.7 9.3 0.0002 25.9 4.2 58 21-88 32-89 (257)
321 cd03024 DsbA_FrnE DsbA family, 71.5 3.7 8.1E-05 26.4 2.2 20 15-34 1-20 (201)
322 PF00282 Pyridoxal_deC: Pyrido 71.4 21 0.00046 25.9 6.2 72 12-85 139-215 (373)
323 PF15643 Tox-PL-2: Papain fold 71.0 17 0.00038 21.5 4.6 26 22-47 20-46 (100)
324 cd04911 ACT_AKiii-YclM-BS_1 AC 70.9 7.2 0.00016 21.8 3.0 27 22-48 14-40 (76)
325 PF00731 AIRC: AIR carboxylase 70.7 24 0.00053 22.4 5.9 39 21-59 11-49 (150)
326 cd03021 DsbA_GSTK DsbA family, 70.5 7.4 0.00016 25.5 3.5 28 14-41 2-33 (209)
327 PF13743 Thioredoxin_5: Thiore 70.1 5.4 0.00012 25.7 2.7 20 17-36 2-21 (176)
328 PF04805 Pox_E10: E10-like pro 69.6 5.3 0.00011 21.8 2.1 17 22-38 17-34 (70)
329 TIGR03140 AhpF alkyl hydropero 69.0 10 0.00022 28.6 4.3 28 8-36 16-43 (515)
330 COG0041 PurE Phosphoribosylcar 66.5 32 0.00069 22.1 5.8 39 19-57 11-49 (162)
331 PF07728 AAA_5: AAA domain (dy 66.4 23 0.0005 21.3 4.9 38 14-51 1-38 (139)
332 PRK15317 alkyl hydroperoxide r 64.8 9.3 0.0002 28.8 3.4 29 7-36 15-43 (517)
333 TIGR01162 purE phosphoribosyla 64.2 35 0.00077 21.8 6.0 41 19-59 7-47 (156)
334 cd06387 PBP1_iGluR_AMPA_GluR3 62.9 40 0.00087 24.4 6.2 77 8-84 58-144 (372)
335 PF02966 DIM1: Mitosis protein 62.4 36 0.00077 21.3 5.5 54 16-77 25-87 (133)
336 TIGR03865 PQQ_CXXCW PQQ-depend 62.2 24 0.00053 22.4 4.5 29 11-39 115-143 (162)
337 PF07511 DUF1525: Protein of u 61.3 16 0.00036 22.1 3.4 24 62-85 79-103 (114)
338 PF00004 AAA: ATPase family as 61.3 22 0.00048 20.7 4.1 34 15-48 1-34 (132)
339 KOG0911 Glutaredoxin-related p 61.0 4.9 0.00011 27.3 1.2 58 15-77 21-83 (227)
340 cd00291 SirA_YedF_YeeD SirA, Y 60.8 23 0.0005 18.6 4.8 17 25-41 38-54 (69)
341 cd05564 PTS_IIB_chitobiose_lic 59.7 32 0.00069 19.8 4.6 58 24-81 14-86 (96)
342 TIGR03190 benz_CoA_bzdN benzoy 59.0 39 0.00084 24.6 5.6 13 65-77 342-354 (377)
343 cd02969 PRX_like1 Peroxiredoxi 58.8 43 0.00092 21.0 7.7 60 10-77 54-123 (171)
344 KOG3160 Gamma-interferon induc 58.2 9.6 0.00021 25.8 2.2 17 12-28 40-56 (220)
345 PF04566 RNA_pol_Rpb2_4: RNA p 57.8 12 0.00026 20.1 2.2 15 70-84 1-15 (63)
346 cd05565 PTS_IIB_lactose PTS_II 57.5 17 0.00038 21.3 3.0 54 25-78 16-84 (99)
347 PRK10670 hypothetical protein; 57.3 33 0.00072 21.7 4.5 45 28-72 3-50 (159)
348 TIGR00853 pts-lac PTS system, 57.1 36 0.00078 19.6 5.4 68 13-80 4-89 (95)
349 TIGR03521 GldG gliding-associa 56.5 80 0.0017 24.3 7.1 47 4-50 41-97 (552)
350 PHA03005 sulfhydryl oxidase; P 56.1 12 0.00025 21.9 2.0 20 18-38 39-59 (96)
351 PF02780 Transketolase_C: Tran 56.1 27 0.00059 20.8 3.8 37 12-48 9-46 (124)
352 PF10087 DUF2325: Uncharacteri 56.0 37 0.0008 19.4 6.4 41 5-45 41-83 (97)
353 COG1225 Bcp Peroxiredoxin [Pos 55.1 54 0.0012 21.0 6.5 15 13-27 31-47 (157)
354 cd06381 PBP1_iGluR_delta_like 55.0 77 0.0017 22.8 7.9 40 3-42 52-91 (363)
355 PF15616 TerY-C: TerY-C metal 54.1 3.3 7.1E-05 25.7 -0.5 15 17-31 74-88 (131)
356 TIGR03757 conj_TIGR03757 integ 53.6 13 0.00029 22.5 2.1 24 62-85 80-104 (113)
357 PRK08118 topology modulation p 53.4 25 0.00054 22.3 3.5 32 13-44 2-33 (167)
358 cd08183 Fe-ADH2 Iron-containin 53.3 84 0.0018 22.7 7.6 43 13-55 23-65 (374)
359 KOG3040 Predicted sugar phosph 53.2 52 0.0011 22.5 4.9 74 2-80 28-102 (262)
360 PF03575 Peptidase_S51: Peptid 52.5 55 0.0012 20.3 5.6 62 26-98 2-64 (154)
361 cd04333 ProX_deacylase This CD 52.3 39 0.00084 20.9 4.2 22 27-48 2-23 (148)
362 PF00578 AhpC-TSA: AhpC/TSA fa 52.2 45 0.00097 19.3 7.5 54 10-72 55-114 (124)
363 KOG2454 Betaine aldehyde dehyd 51.4 44 0.00096 25.0 4.7 41 6-46 210-255 (583)
364 cd06388 PBP1_iGluR_AMPA_GluR4 50.5 93 0.002 22.4 6.8 77 8-85 58-145 (371)
365 PF11711 Tim54: Inner membrane 49.7 40 0.00087 24.8 4.4 38 11-48 66-112 (382)
366 PF14424 Toxin-deaminase: The 49.5 41 0.00088 20.8 3.9 23 13-35 97-120 (133)
367 PF01522 Polysacc_deac_1: Poly 48.7 11 0.00023 22.1 1.2 35 5-40 88-122 (123)
368 KOG4700 Uncharacterized homolo 48.7 16 0.00034 24.1 2.0 35 55-89 102-137 (207)
369 PF01206 TusA: Sulfurtransfera 47.8 43 0.00092 17.7 4.0 17 22-38 9-26 (70)
370 TIGR00011 YbaK_EbsC ybaK/ebsC 47.7 59 0.0013 20.1 4.5 22 28-49 2-23 (152)
371 COG3340 PepE Peptidase E [Amin 47.4 89 0.0019 21.3 9.1 46 4-49 22-74 (224)
372 TIGR01917 gly_red_sel_B glycin 47.1 40 0.00086 25.3 4.0 30 13-43 337-370 (431)
373 PRK04195 replication factor C 47.0 1.2E+02 0.0026 22.7 7.4 37 12-48 39-75 (482)
374 cd00755 YgdL_like Family of ac 46.8 23 0.00049 24.0 2.6 23 17-39 150-172 (231)
375 PF07689 KaiB: KaiB domain; I 46.5 7.6 0.00016 22.1 0.3 48 17-71 2-56 (82)
376 PLN02590 probable tyrosine dec 45.9 1.4E+02 0.003 23.1 8.2 71 13-85 228-308 (539)
377 PF05663 DUF809: Protein of un 45.6 23 0.0005 20.9 2.2 23 20-42 43-65 (138)
378 COG0602 NrdG Organic radical a 45.6 6.6 0.00014 26.2 -0.1 79 15-100 23-108 (212)
379 PF00763 THF_DHG_CYH: Tetrahyd 45.6 65 0.0014 19.2 4.7 46 25-70 46-91 (117)
380 PF11399 DUF3192: Protein of u 45.2 24 0.00053 20.9 2.3 17 65-81 80-96 (102)
381 KOG2603 Oligosaccharyltransfer 45.0 82 0.0018 22.7 5.1 51 15-72 64-132 (331)
382 PF04214 DUF411: Protein of un 44.7 43 0.00093 18.5 3.0 50 57-106 12-68 (70)
383 KOG2244 Highly conserved prote 43.9 21 0.00046 27.8 2.3 66 3-68 102-179 (786)
384 cd06389 PBP1_iGluR_AMPA_GluR2 43.8 1.2E+02 0.0026 21.8 6.1 67 8-74 52-128 (370)
385 TIGR01650 PD_CobS cobaltochela 43.6 1.2E+02 0.0026 21.9 5.9 42 8-49 60-101 (327)
386 PF13401 AAA_22: AAA domain; P 43.4 47 0.001 19.4 3.5 52 14-65 6-65 (131)
387 KOG0629 Glutamate decarboxylas 43.3 1.5E+02 0.0032 22.6 8.2 74 11-85 194-274 (510)
388 PF07955 DUF1687: Protein of u 42.7 1.6 3.5E-05 27.1 -3.2 60 5-64 3-69 (133)
389 KOG1734 Predicted RING-contain 42.5 12 0.00026 26.3 0.8 13 20-32 270-282 (328)
390 cd04336 YeaK YeaK is an unchar 42.5 69 0.0015 19.7 4.2 23 27-49 2-24 (153)
391 TIGR02652 conserved hypothetic 42.3 8.3 0.00018 24.3 -0.0 14 21-34 10-23 (163)
392 KOG1351 Vacuolar H+-ATPase V1 42.1 40 0.00086 24.4 3.3 38 1-38 152-189 (489)
393 COG2256 MGS1 ATPase related to 42.0 1.3E+02 0.0029 22.6 6.0 69 6-75 39-113 (436)
394 COG4727 Uncharacterized protei 41.9 9 0.0002 26.3 0.1 42 26-77 195-236 (287)
395 TIGR01918 various_sel_PB selen 41.6 54 0.0012 24.6 4.0 29 13-42 337-369 (431)
396 PF12949 HeH: HeH/LEM domain; 41.6 20 0.00044 16.9 1.3 13 28-40 8-20 (35)
397 PF13353 Fer4_12: 4Fe-4S singl 41.3 17 0.00036 21.8 1.2 14 14-27 7-23 (139)
398 TIGR02263 benz_CoA_red_C benzo 41.3 82 0.0018 22.9 4.9 34 15-48 325-362 (380)
399 PF09654 DUF2396: Protein of u 41.3 8.4 0.00018 24.2 -0.1 14 21-34 7-20 (161)
400 PRK06683 hypothetical protein; 41.2 67 0.0014 18.1 5.6 42 15-65 29-72 (82)
401 PF07908 D-aminoacyl_C: D-amin 40.6 35 0.00076 17.1 2.2 17 64-80 17-33 (48)
402 PF04273 DUF442: Putative phos 40.5 79 0.0017 18.8 4.0 52 23-74 43-94 (110)
403 PF00403 HMA: Heavy-metal-asso 40.3 53 0.0012 16.7 3.1 27 20-46 6-34 (62)
404 PF01451 LMWPc: Low molecular 39.8 33 0.00072 20.7 2.4 40 1-40 14-61 (138)
405 PF15379 DUF4606: Domain of un 39.6 29 0.00063 20.7 2.0 20 15-34 26-45 (104)
406 cd04335 PrdX_deacylase This CD 39.5 94 0.002 19.3 5.2 22 27-48 2-23 (156)
407 PRK15116 sulfur acceptor prote 39.3 37 0.00081 23.6 2.8 23 17-39 169-192 (268)
408 cd08170 GlyDH Glycerol dehydro 39.1 1.4E+02 0.0031 21.2 6.9 43 13-55 23-67 (351)
409 PRK07758 hypothetical protein; 39.1 22 0.00048 20.8 1.4 13 15-27 14-26 (95)
410 PRK02935 hypothetical protein; 38.8 5.7 0.00012 23.7 -1.1 15 22-36 72-86 (110)
411 PRK06217 hypothetical protein; 38.6 57 0.0012 20.8 3.5 29 13-41 2-30 (183)
412 PF03102 NeuB: NeuB family; I 38.2 83 0.0018 21.6 4.3 73 5-85 60-133 (241)
413 PF05673 DUF815: Protein of un 37.0 1.4E+02 0.0031 20.7 5.9 64 12-79 52-119 (249)
414 PRK10126 tyrosine phosphatase; 36.8 61 0.0013 20.1 3.3 38 1-40 18-60 (147)
415 PF13451 zf-trcl: Probable zin 36.1 33 0.00072 17.5 1.6 14 21-34 34-47 (49)
416 PLN02234 1-deoxy-D-xylulose-5- 36.0 2.2E+02 0.0047 22.7 6.7 66 13-82 545-612 (641)
417 PF01216 Calsequestrin: Calseq 36.0 77 0.0017 23.3 4.0 41 30-77 83-125 (383)
418 PRK11892 pyruvate dehydrogenas 35.8 1.9E+02 0.0042 21.9 6.4 67 13-82 341-409 (464)
419 cd03082 TRX_Fd_NuoE_W_FDH_beta 35.7 68 0.0015 17.4 3.0 17 65-81 45-61 (72)
420 cd00002 YbaK_deacylase This CD 34.4 1.1E+02 0.0024 18.9 4.2 22 28-49 3-24 (152)
421 PRK03992 proteasome-activating 34.4 1.5E+02 0.0032 21.6 5.4 35 12-46 165-199 (389)
422 cd01520 RHOD_YbbB Member of th 34.2 1E+02 0.0023 18.3 4.3 34 11-46 85-118 (128)
423 KOG0733 Nuclear AAA ATPase (VC 34.2 1.6E+02 0.0034 23.8 5.6 60 13-74 224-290 (802)
424 COG2608 CopZ Copper chaperone 34.2 76 0.0017 17.1 3.1 17 21-37 11-28 (71)
425 COG3529 Predicted nucleic-acid 34.1 40 0.00087 18.1 1.8 22 20-41 10-33 (66)
426 TIGR02826 RNR_activ_nrdG3 anae 34.1 1.2E+02 0.0025 19.0 4.3 19 14-32 17-38 (147)
427 PF14427 Pput2613-deam: Pput_2 33.9 73 0.0016 19.3 3.1 30 19-48 74-104 (118)
428 TIGR03569 NeuB_NnaB N-acetylne 33.9 1.8E+02 0.0039 21.0 5.9 71 4-84 79-149 (329)
429 PF13207 AAA_17: AAA domain; P 33.7 82 0.0018 18.1 3.4 31 15-45 2-32 (121)
430 KOG3170 Conserved phosducin-li 33.7 68 0.0015 21.8 3.2 47 18-72 118-167 (240)
431 PF11238 DUF3039: Protein of u 33.6 24 0.00053 18.7 0.9 13 21-33 45-57 (58)
432 PLN02880 tyrosine decarboxylas 33.4 2.1E+02 0.0046 21.6 6.6 70 13-85 180-260 (490)
433 PF05728 UPF0227: Uncharacteri 33.2 81 0.0018 20.6 3.5 61 22-82 10-73 (187)
434 PF07894 DUF1669: Protein of u 33.1 1.8E+02 0.0039 20.6 6.6 63 12-77 118-186 (284)
435 PF13344 Hydrolase_6: Haloacid 33.1 1E+02 0.0022 17.8 3.9 58 2-61 19-77 (101)
436 PRK15348 type III secretion sy 32.7 45 0.00097 23.1 2.3 33 10-42 16-48 (249)
437 cd08193 HVD 5-hydroxyvalerate 32.4 1.9E+02 0.0042 20.8 7.1 63 13-75 27-93 (376)
438 TIGR02884 spore_pdaA delta-lac 32.4 87 0.0019 20.9 3.7 43 4-46 119-161 (224)
439 PRK11391 etp phosphotyrosine-p 32.3 66 0.0014 19.9 2.9 38 1-40 18-60 (144)
440 PF10281 Ish1: Putative stress 32.1 44 0.00095 15.7 1.7 15 27-41 7-21 (38)
441 COG4107 PhnK ABC-type phosphon 32.1 1E+02 0.0022 20.8 3.8 58 28-85 130-187 (258)
442 PLN00020 ribulose bisphosphate 31.7 1E+02 0.0022 23.1 4.0 33 15-47 151-183 (413)
443 PF04592 SelP_N: Selenoprotein 31.5 1.8E+02 0.0038 20.1 5.6 53 10-63 25-87 (238)
444 PF07293 DUF1450: Protein of u 31.3 85 0.0018 17.6 2.9 21 61-81 39-60 (78)
445 PF11332 DUF3134: Protein of u 31.1 13 0.00029 20.6 -0.3 17 89-105 21-37 (73)
446 PRK00411 cdc6 cell division co 30.9 2E+02 0.0044 20.6 6.3 36 13-48 56-96 (394)
447 COG3581 Uncharacterized protei 30.9 80 0.0017 23.6 3.4 33 14-46 72-111 (420)
448 PF07895 DUF1673: Protein of u 30.6 8.4 0.00018 25.7 -1.4 23 21-46 12-34 (205)
449 smart00226 LMWPc Low molecular 30.4 83 0.0018 19.0 3.1 39 1-40 14-57 (140)
450 COG4822 CbiK Cobalamin biosynt 30.3 1.9E+02 0.004 20.0 7.2 72 28-102 157-231 (265)
451 PRK13669 hypothetical protein; 30.2 98 0.0021 17.4 3.1 22 60-81 38-60 (78)
452 cd01444 GlpE_ST GlpE sulfurtra 30.0 1E+02 0.0022 16.9 4.3 28 11-39 55-82 (96)
453 CHL00195 ycf46 Ycf46; Provisio 29.8 1.2E+02 0.0025 23.2 4.3 36 12-47 259-294 (489)
454 PF03065 Glyco_hydro_57: Glyco 29.7 27 0.00059 25.0 0.9 43 4-47 155-197 (360)
455 PRK13947 shikimate kinase; Pro 29.6 1.1E+02 0.0024 18.9 3.7 32 13-44 2-33 (171)
456 COG5204 SPT4 Transcription elo 29.6 15 0.00032 21.6 -0.3 13 17-29 23-35 (112)
457 TIGR03438 probable methyltrans 29.5 1.4E+02 0.003 20.8 4.5 29 20-48 69-99 (301)
458 PF13986 DUF4224: Domain of un 29.5 80 0.0017 15.8 2.4 19 23-41 14-32 (47)
459 COG2266 GTP:adenosylcobinamide 29.3 1.7E+02 0.0037 19.2 7.5 66 5-70 54-119 (177)
460 PF14447 Prok-RING_4: Prokaryo 29.0 17 0.00036 19.1 -0.2 9 20-28 39-47 (55)
461 PRK14180 bifunctional 5,10-met 28.7 2.1E+02 0.0046 20.2 6.1 44 24-67 47-90 (282)
462 cd08185 Fe-ADH1 Iron-containin 28.7 2.3E+02 0.005 20.5 7.2 43 13-55 26-73 (380)
463 PF02288 Dehydratase_MU: Dehyd 28.6 1.4E+02 0.003 18.0 4.3 38 14-51 4-44 (112)
464 TIGR01241 FtsH_fam ATP-depende 28.6 2E+02 0.0044 21.7 5.4 34 13-46 89-122 (495)
465 PRK14174 bifunctional 5,10-met 28.5 2.2E+02 0.0047 20.2 6.1 45 22-66 45-89 (295)
466 COG1039 RnhC Ribonuclease HIII 28.2 2.3E+02 0.0049 20.3 5.3 48 25-72 172-219 (297)
467 PF13364 BetaGal_dom4_5: Beta- 28.1 60 0.0013 19.2 2.1 17 65-81 62-78 (111)
468 PRK14189 bifunctional 5,10-met 28.1 2.2E+02 0.0048 20.1 6.1 45 23-67 47-91 (285)
469 KOG3028 Translocase of outer m 28.0 2.2E+02 0.0049 20.5 5.1 58 21-89 15-73 (313)
470 PF12156 ATPase-cat_bd: Putati 27.9 58 0.0013 18.5 2.0 18 22-39 28-45 (88)
471 PF05184 SapB_1: Saposin-like 27.9 41 0.00088 15.5 1.1 14 22-35 3-16 (39)
472 PRK14169 bifunctional 5,10-met 27.8 2.2E+02 0.0048 20.1 6.1 45 23-67 45-89 (282)
473 PF04512 Baculo_PEP_N: Baculov 27.7 1.1E+02 0.0024 18.0 3.1 35 65-101 3-38 (97)
474 cd03081 TRX_Fd_NuoE_FDH_gamma 27.6 43 0.00093 18.5 1.4 17 65-81 53-69 (80)
475 PRK09590 celB cellobiose phosp 27.5 1.4E+02 0.003 17.6 4.2 55 24-78 16-87 (104)
476 COG0394 Wzb Protein-tyrosine-p 27.4 94 0.002 19.3 3.0 40 1-41 18-62 (139)
477 COG1543 Uncharacterized conser 26.9 46 0.001 25.3 1.7 31 15-45 178-208 (504)
478 PRK14175 bifunctional 5,10-met 26.9 2.3E+02 0.0051 20.0 6.1 44 24-67 48-91 (286)
479 cd08176 LPO Lactadehyde:propan 26.9 2.5E+02 0.0054 20.3 6.4 43 13-55 29-75 (377)
480 PF14432 DYW_deaminase: DYW fa 26.8 80 0.0017 18.9 2.5 26 21-46 84-110 (116)
481 PLN02790 transketolase 26.6 3.3E+02 0.0071 21.6 6.5 37 13-49 541-578 (654)
482 PRK12906 secA preprotein trans 26.5 3.5E+02 0.0077 22.2 6.5 38 10-48 438-475 (796)
483 PRK14190 bifunctional 5,10-met 26.5 2.4E+02 0.0051 20.0 6.1 45 23-67 47-91 (284)
484 TIGR03191 benz_CoA_bzdO benzoy 26.4 1.1E+02 0.0024 22.8 3.6 51 27-77 351-402 (430)
485 TIGR00635 ruvB Holliday juncti 26.4 2.2E+02 0.0048 19.5 6.8 59 13-74 31-89 (305)
486 PRK14167 bifunctional 5,10-met 26.1 2.5E+02 0.0053 20.0 6.1 46 22-67 45-90 (297)
487 PRK14191 bifunctional 5,10-met 26.0 2.4E+02 0.0053 19.9 6.1 45 22-66 45-89 (285)
488 PF01257 2Fe-2S_thioredx: Thio 25.9 64 0.0014 20.1 2.0 17 65-81 117-133 (145)
489 PTZ00494 tuzin-like protein; P 25.7 3.3E+02 0.0072 21.4 6.7 38 13-50 395-433 (664)
490 cd08192 Fe-ADH7 Iron-containin 25.6 2.6E+02 0.0056 20.1 7.1 62 13-75 25-91 (370)
491 PF11023 DUF2614: Protein of u 25.6 16 0.00035 22.1 -0.7 15 22-36 71-85 (114)
492 cd02020 CMPK Cytidine monophos 25.6 1.2E+02 0.0026 18.0 3.2 30 15-44 2-31 (147)
493 cd06340 PBP1_ABC_ligand_bindin 25.5 1.7E+02 0.0037 20.5 4.3 40 3-42 59-99 (347)
494 cd08186 Fe-ADH8 Iron-containin 25.5 2.7E+02 0.0058 20.2 7.1 42 13-54 27-73 (383)
495 TIGR02689 ars_reduc_gluta arse 25.3 1.1E+02 0.0024 18.3 3.0 39 1-40 16-56 (126)
496 TIGR00390 hslU ATP-dependent p 25.3 1.3E+02 0.0029 22.7 3.8 36 11-46 46-81 (441)
497 TIGR00963 secA preprotein tran 25.3 3.8E+02 0.0082 21.9 6.4 39 9-48 402-440 (745)
498 PF13510 Fer2_4: 2Fe-2S iron-s 25.2 1.1E+02 0.0025 16.9 2.8 27 69-102 5-31 (82)
499 PRK04040 adenylate kinase; Pro 25.2 1.8E+02 0.0039 18.8 4.1 33 13-45 3-35 (188)
500 PF00383 dCMP_cyt_deam_1: Cyti 25.0 1.2E+02 0.0026 17.0 3.0 20 13-33 72-93 (102)
No 1
>PHA03050 glutaredoxin; Provisional
Probab=99.97 E-value=7.8e-31 Score=157.39 Aligned_cols=102 Identities=24% Similarity=0.536 Sum_probs=96.7
Q ss_pred ChhhHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCC---ceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 1 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGV---TFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 1 ~a~~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i---~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
||..++.+.+...+|++|+.+|||||.+|+.+|+++++ +|+.+||+......+.++++.+.+|..+||+||+||++|
T Consensus 1 ~~~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~i 80 (108)
T PHA03050 1 MAEEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSI 80 (108)
T ss_pred ChHHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEE
Confidence 78889999999999999999999999999999999999 799999998666678899999999999999999999999
Q ss_pred eecHHHHHHHHcCCcHHHHHhcCcc
Q 033962 78 GGCDSTTALHREGKLVPLLTEAGAV 102 (107)
Q Consensus 78 g~~~~~~~~~~~~~l~~~L~~~~~~ 102 (107)
||++++.+++++|+|.++|+++|++
T Consensus 81 GG~ddl~~l~~~g~L~~~l~~~~~~ 105 (108)
T PHA03050 81 GGYSDLLEIDNMDALGDILSSIGVL 105 (108)
T ss_pred eChHHHHHHHHcCCHHHHHHHcccc
Confidence 9999999999999999999999875
No 2
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.97 E-value=1.9e-30 Score=153.74 Aligned_cols=96 Identities=45% Similarity=0.760 Sum_probs=90.6
Q ss_pred HhhccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHH
Q 033962 7 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTAL 86 (107)
Q Consensus 7 ~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~ 86 (107)
++.++..+|++|+.++||+|++++.+|++++++|+++||+.+++..+.++.+.+.+|..++|+||+||++|||++++.++
T Consensus 2 ~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 2 RRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred hhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 46778899999999999999999999999999999999999988777888899999999999999999999999999999
Q ss_pred HHcCCcHHHHHhcCcc
Q 033962 87 HREGKLVPLLTEAGAV 102 (107)
Q Consensus 87 ~~~~~l~~~L~~~~~~ 102 (107)
+++|+|.++|++.|.+
T Consensus 82 ~~~G~L~~~l~~~~~~ 97 (99)
T TIGR02189 82 HISGSLVPMLKQAGAL 97 (99)
T ss_pred HHcCCHHHHHHHhCcc
Confidence 9999999999999875
No 3
>PRK10824 glutaredoxin-4; Provisional
Probab=99.96 E-value=1.5e-28 Score=148.38 Aligned_cols=98 Identities=23% Similarity=0.537 Sum_probs=91.5
Q ss_pred hhHHHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 3 LPKAQETVSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 3 ~~~~~~~~~~~~v~~y~~-----~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
.+.+++++..++|++|+. |+||||++|+.+|++++++|.++|++.+ .+.++++.+++|+++||+||+||++|
T Consensus 5 ~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d---~~~~~~l~~~sg~~TVPQIFI~G~~I 81 (115)
T PRK10824 5 IEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN---PDIRAELPKYANWPTFPQLWVDGELV 81 (115)
T ss_pred HHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC---HHHHHHHHHHhCCCCCCeEEECCEEE
Confidence 467889999999999998 5999999999999999999999999876 57888999999999999999999999
Q ss_pred eecHHHHHHHHcCCcHHHHHhcCccc
Q 033962 78 GGCDSTTALHREGKLVPLLTEAGAVA 103 (107)
Q Consensus 78 g~~~~~~~~~~~~~l~~~L~~~~~~~ 103 (107)
||++++.+++.+|+|.++|++.|.+-
T Consensus 82 GG~ddl~~l~~~G~L~~lL~~~~~~~ 107 (115)
T PRK10824 82 GGCDIVIEMYQRGELQQLIKETAAKY 107 (115)
T ss_pred cChHHHHHHHHCCCHHHHHHHHHhhh
Confidence 99999999999999999999988753
No 4
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.8e-28 Score=143.33 Aligned_cols=102 Identities=57% Similarity=0.943 Sum_probs=97.5
Q ss_pred ChhhHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeec
Q 033962 1 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGC 80 (107)
Q Consensus 1 ~a~~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~ 80 (107)
++..++++++..++|++|+.++||+|+.++.+|...++++..+++|.++++.++++.+.+.+|.+++|.+|+||++|||.
T Consensus 2 ~~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~ 81 (104)
T KOG1752|consen 2 AAEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGA 81 (104)
T ss_pred cHHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHhcCcc
Q 033962 81 DSTTALHREGKLVPLLTEAGAV 102 (107)
Q Consensus 81 ~~~~~~~~~~~l~~~L~~~~~~ 102 (107)
+++..++.+|+|..+|++.+.+
T Consensus 82 ~dl~~lh~~G~L~~~l~~~~~~ 103 (104)
T KOG1752|consen 82 SDLMALHKSGELVPLLKEAGAL 103 (104)
T ss_pred HHHHHHHHcCCHHHHHHHhhcc
Confidence 9999999999999999998864
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.95 E-value=5e-27 Score=138.59 Aligned_cols=91 Identities=25% Similarity=0.628 Sum_probs=84.8
Q ss_pred hhHHHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 3 LPKAQETVSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 3 ~~~~~~~~~~~~v~~y~~-----~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
.+.+++++..++|++|+. ++||||.+|+.+|++++++|.++|++.+ .+.++++.+.+|..++|++|+||+++
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~---~~~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED---PEIRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC---HHHHHHHHHHhCCCCCCEEEECCEEE
Confidence 467889999999999987 8999999999999999999999999866 67788999999999999999999999
Q ss_pred eecHHHHHHHHcCCcHHHH
Q 033962 78 GGCDSTTALHREGKLVPLL 96 (107)
Q Consensus 78 g~~~~~~~~~~~~~l~~~L 96 (107)
||++++.+++++|+|.++|
T Consensus 79 GG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 79 GGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred eChHHHHHHHHCcChHHhC
Confidence 9999999999999999875
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.93 E-value=4.9e-25 Score=128.51 Aligned_cols=85 Identities=29% Similarity=0.678 Sum_probs=78.4
Q ss_pred HHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeec
Q 033962 6 AQETVSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGC 80 (107)
Q Consensus 6 ~~~~~~~~~v~~y~~-----~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~ 80 (107)
++++++.++|++|+. ++||+|.+++.+|++++++|+++|++.+ .+.++++.+.+|..++|+||+||++|||+
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED---EEVRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 356778899999987 6999999999999999999999999876 67888999999999999999999999999
Q ss_pred HHHHHHHHcCCcH
Q 033962 81 DSTTALHREGKLV 93 (107)
Q Consensus 81 ~~~~~~~~~~~l~ 93 (107)
+++.+++++|+|+
T Consensus 78 ~~l~~l~~~g~L~ 90 (90)
T cd03028 78 DIVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHHcCCcC
Confidence 9999999999884
No 7
>PRK10638 glutaredoxin 3; Provisional
Probab=99.92 E-value=1.3e-24 Score=124.96 Aligned_cols=82 Identities=39% Similarity=0.805 Sum_probs=76.0
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCc
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKL 92 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l 92 (107)
.+|++|+.++||+|++++.+|++++++|+.+|++.+ .+..+++.+.+|..++|++|+||+++||++++..+..+|.|
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~---~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l 78 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGD---AAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGL 78 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCH
Confidence 479999999999999999999999999999999876 45567888899999999999999999999999999999999
Q ss_pred HHHHH
Q 033962 93 VPLLT 97 (107)
Q Consensus 93 ~~~L~ 97 (107)
.++|+
T Consensus 79 ~~~~~ 83 (83)
T PRK10638 79 DPLLK 83 (83)
T ss_pred HHHhC
Confidence 98874
No 8
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.92 E-value=1.1e-24 Score=123.94 Aligned_cols=79 Identities=44% Similarity=0.935 Sum_probs=74.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCcHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVP 94 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l~~ 94 (107)
|++|+.++||+|.+|+.+|++++++|+++|++.+ ++.++++...+|..++|++|+||+.+||++++.+++++|+|.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~---~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~ 77 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGD---PALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDP 77 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCC---HHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhh
Confidence 6899999999999999999999999999999987 5677788888999999999999999999999999999999998
Q ss_pred HH
Q 033962 95 LL 96 (107)
Q Consensus 95 ~L 96 (107)
+|
T Consensus 78 ~l 79 (79)
T TIGR02181 78 LL 79 (79)
T ss_pred hC
Confidence 75
No 9
>PTZ00062 glutaredoxin; Provisional
Probab=99.91 E-value=9.8e-24 Score=138.76 Aligned_cols=94 Identities=20% Similarity=0.494 Sum_probs=87.2
Q ss_pred hhHHHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 3 LPKAQETVSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 3 ~~~~~~~~~~~~v~~y~~-----~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
.+.+++++..++|++|.. |+||+|++++.+|++++++|.++||+.+ .+.++.+.+.+|++++|+||+||++|
T Consensus 103 ~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d---~~~~~~l~~~sg~~TvPqVfI~G~~I 179 (204)
T PTZ00062 103 VEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED---PDLREELKVYSNWPTYPQLYVNGELI 179 (204)
T ss_pred HHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC---HHHHHHHHHHhCCCCCCeEEECCEEE
Confidence 467888999999999987 6999999999999999999999999977 67788999999999999999999999
Q ss_pred eecHHHHHHHHcCCcHHHHHhc
Q 033962 78 GGCDSTTALHREGKLVPLLTEA 99 (107)
Q Consensus 78 g~~~~~~~~~~~~~l~~~L~~~ 99 (107)
||++++.+++++|+|.+.|.+.
T Consensus 180 GG~d~l~~l~~~G~L~~~l~~~ 201 (204)
T PTZ00062 180 GGHDIIKELYESNSLRKVIPDD 201 (204)
T ss_pred cChHHHHHHHHcCChhhhhhhh
Confidence 9999999999999999998753
No 10
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.91 E-value=1.1e-23 Score=120.67 Aligned_cols=82 Identities=55% Similarity=0.966 Sum_probs=76.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCc--eEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVT--FKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKL 92 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~--~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l 92 (107)
|++|+.+|||+|++++.+|++++++ |++++++.++...+.++++.+.+|..++|++|+||+.+||++++.+++++|+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999999 99999998876677778899999999999999999999999999999999999
Q ss_pred HHHH
Q 033962 93 VPLL 96 (107)
Q Consensus 93 ~~~L 96 (107)
.++|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 9875
No 11
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.90 E-value=3.1e-23 Score=118.38 Aligned_cols=81 Identities=60% Similarity=1.039 Sum_probs=75.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCcH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLV 93 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l~ 93 (107)
+|++|+.+|||+|++++.+|++++++|++++++.+....+.+.++.+.+|..++|++|++|+++||++++.++.++|+|.
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 58999999999999999999999999999999988766677778889999999999999999999999999999999997
Q ss_pred H
Q 033962 94 P 94 (107)
Q Consensus 94 ~ 94 (107)
+
T Consensus 81 ~ 81 (82)
T cd03419 81 K 81 (82)
T ss_pred C
Confidence 5
No 12
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.90 E-value=8.9e-23 Score=128.13 Aligned_cols=85 Identities=26% Similarity=0.532 Sum_probs=78.4
Q ss_pred cEEEEEeC------CChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCC----CceeEEEECCeEEeecHHH
Q 033962 14 SVVVFSKT------LCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ----KTVPNVFIGGKHIGGCDST 83 (107)
Q Consensus 14 ~v~~y~~~------~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~----~~vP~i~i~g~~ig~~~~~ 83 (107)
+|++|+++ +||+|.+|+.+|++++|+|+++||+.+ .+.+++|.+.+|. .++|+||++|++|||.+++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~---~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMD---SGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 48999999 999999999999999999999999988 6777788888775 8999999999999999999
Q ss_pred HHHHHcCCcHHHHHhcCc
Q 033962 84 TALHREGKLVPLLTEAGA 101 (107)
Q Consensus 84 ~~~~~~~~l~~~L~~~~~ 101 (107)
.+++++|+|.++|+..+.
T Consensus 78 ~~L~e~G~L~~lL~~~~~ 95 (147)
T cd03031 78 LRLNESGELRKLLKGIRA 95 (147)
T ss_pred HHHHHcCCHHHHHhhccc
Confidence 999999999999998743
No 13
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.90 E-value=1.1e-22 Score=114.41 Aligned_cols=74 Identities=39% Similarity=0.883 Sum_probs=67.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCC-ceeEEEECCeEEeecHHHHHHHHcC
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQK-TVPNVFIGGKHIGGCDSTTALHREG 90 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~-~vP~i~i~g~~ig~~~~~~~~~~~~ 90 (107)
+|++|+.++||+|.+|+.+|++++++|+++|++.+ .+.++++.+.+|.. ++|++|++|+.+||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~---~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD---PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 48999999999999999999999999999999987 55667777788877 9999999999999999999988765
No 14
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.89 E-value=1.3e-22 Score=113.90 Aligned_cols=71 Identities=27% Similarity=0.556 Sum_probs=65.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
+|++|+.++||+|++|+.+|++++++|+.+|++.+ ....+++.+.+|..++|++|+||++|||++++.++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~---~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF---PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 68999999999999999999999999999999987 456778899999999999999999999999987653
No 15
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.9e-22 Score=116.93 Aligned_cols=95 Identities=31% Similarity=0.659 Sum_probs=89.3
Q ss_pred hhHHHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcC-CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeE
Q 033962 3 LPKAQETVSSNSVVVFSK-----TLCPFCVSVKELFQQLG-VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKH 76 (107)
Q Consensus 3 ~~~~~~~~~~~~v~~y~~-----~~Cp~C~~a~~~l~~~~-i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ 76 (107)
.+++++.++.++|++|-+ |.|.++.++..+|...| ++|.++||-.+ +++++.+++.++++|+|+++++|++
T Consensus 5 ~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d---~eiR~~lk~~s~WPT~PQLyi~GEf 81 (105)
T COG0278 5 LDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD---PEIRQGLKEYSNWPTFPQLYVNGEF 81 (105)
T ss_pred HHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC---HHHHhccHhhcCCCCCceeeECCEE
Confidence 367888999999999966 89999999999999999 89999999998 8899999999999999999999999
Q ss_pred EeecHHHHHHHHcCCcHHHHHhcC
Q 033962 77 IGGCDSTTALHREGKLVPLLTEAG 100 (107)
Q Consensus 77 ig~~~~~~~~~~~~~l~~~L~~~~ 100 (107)
+||+|.+.+++++|+|.++|++.+
T Consensus 82 vGG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 82 VGGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred eccHHHHHHHHHcchHHHHHHhcC
Confidence 999999999999999999998764
No 16
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.7e-22 Score=115.34 Aligned_cols=78 Identities=40% Similarity=0.878 Sum_probs=68.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCc
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKL 92 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l 92 (107)
.|++|+.++||||.+++++|++.|++|++++++.++. .+.++.+.+..|..++|+||+||+++||++++.++...+.|
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence 6899999999999999999999999999999999864 35555666666899999999999999999988887776655
No 17
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.88 E-value=3.3e-22 Score=113.91 Aligned_cols=74 Identities=45% Similarity=0.763 Sum_probs=65.1
Q ss_pred ccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 10 VSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 10 ~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
..+.+|++|+.+|||+|++++.+|++++++|+.+|++.+... .++...+|..++|++|+||+++||++++.+++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~----~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARG----RSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHH----HHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 456789999999999999999999999999999999876432 35677789999999999999999999988764
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.87 E-value=1.1e-21 Score=109.85 Aligned_cols=70 Identities=40% Similarity=0.709 Sum_probs=62.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
+|++|+.++||+|.+|+.+|++++++|+.+|++.+. ....+...+|..++|++|+||+++||++++.+++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~----~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI----TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh----hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 689999999999999999999999999999998764 2346677789999999999999999999988765
No 19
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.85 E-value=5.6e-21 Score=137.11 Aligned_cols=91 Identities=29% Similarity=0.549 Sum_probs=77.7
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHH-----HhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSAL-----AEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l-----~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
.+|++|+.+|||+|++++.+|+++||+|+++||+.++...+..+++ ...+|..+||+||+||++|||++++..
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~-- 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA-- 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH--
Confidence 4799999999999999999999999999999999775433333332 233688999999999999999999976
Q ss_pred HcCCcHHHHHhcCccccc
Q 033962 88 REGKLVPLLTEAGAVAKT 105 (107)
Q Consensus 88 ~~~~l~~~L~~~~~~~~~ 105 (107)
..|+|..+|+..+++.++
T Consensus 80 ~~g~l~~~~~~~~~~~~~ 97 (410)
T PRK12759 80 RAGEVIARVKGSSLTTFS 97 (410)
T ss_pred HhCCHHHHhcCCcccccc
Confidence 899999999999988765
No 20
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.85 E-value=1.4e-20 Score=108.52 Aligned_cols=72 Identities=33% Similarity=0.701 Sum_probs=62.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHh-----cCCceEEEEcCCCCCchHHHHHHHhhcCC--CceeEEEECCeEEeecHHHHHH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQ-----LGVTFKAIELDKESDGSDIQSALAEWTGQ--KTVPNVFIGGKHIGGCDSTTAL 86 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~l~~~~~~--~~vP~i~i~g~~ig~~~~~~~~ 86 (107)
+|++|+.+|||+|++|+++|++ .+++|+++|++.+. ...+++....|. .++|+||+||+.+||++++.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~---~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG---ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh---HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 6899999999999999999999 79999999999763 234466777764 7999999999999999998876
Q ss_pred HH
Q 033962 87 HR 88 (107)
Q Consensus 87 ~~ 88 (107)
+.
T Consensus 79 ~~ 80 (85)
T PRK11200 79 VK 80 (85)
T ss_pred HH
Confidence 64
No 21
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.85 E-value=1.3e-20 Score=108.90 Aligned_cols=73 Identities=36% Similarity=0.766 Sum_probs=61.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCC--CceeEEEECCeEEeecHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQ--KTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~--~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
|++|+++|||+|.+|+.+|+++ +++|+.+|++.+. ...+++.+.+|. .++|+||+||+++||++++.++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~---~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG---ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH---HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHH
Confidence 7899999999999999999998 4678889988652 233456777775 79999999999999999998877
Q ss_pred HcC
Q 033962 88 REG 90 (107)
Q Consensus 88 ~~~ 90 (107)
+++
T Consensus 79 ~~~ 81 (86)
T TIGR02183 79 KEN 81 (86)
T ss_pred Hhc
Confidence 653
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.84 E-value=3.2e-20 Score=102.61 Aligned_cols=71 Identities=44% Similarity=0.882 Sum_probs=64.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
+|++|+.++||+|++++.+|++++++|.++|++.+ .+..+++.+.+|..++|++|+||+.+||++++.++.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~---~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED---GELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 58999999999999999999999999999999987 446778888899999999999999999999887754
No 23
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.83 E-value=5.3e-20 Score=99.58 Aligned_cols=60 Identities=38% Similarity=0.863 Sum_probs=56.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
|++|+.++||+|++++.+|++++++|+++|++.+ .+.++++++.+|..++|++|+||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~---~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDED---EEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGS---HHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccc---hhHHHHHHHHcCCCccCEEEECCEEC
Confidence 6899999999999999999999999999999998 57788889888999999999999976
No 24
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.77 E-value=2.7e-18 Score=98.21 Aligned_cols=65 Identities=20% Similarity=0.474 Sum_probs=57.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDS 82 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~ 82 (107)
+|++|+.++||+|++++.+|++.|++|+++|++.+ ++..+++.. .|..++|+++++|..+.||+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~---~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV---PEAAETLRA-QGFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHH-cCCCCcCEEEECCEEEecCCH
Confidence 68999999999999999999999999999999987 444555554 588999999999999999963
No 25
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.77 E-value=2.8e-18 Score=96.03 Aligned_cols=64 Identities=23% Similarity=0.522 Sum_probs=55.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCe-EEeecHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGK-HIGGCDS 82 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~-~ig~~~~ 82 (107)
|++|+.++||+|++++.+|++++++|+++||+.+ .+.++++.. .|..++|+++++|. .++|++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~---~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQ---PEAIDYVKA-QGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHH-cCCcccCEEEECCCcEEeccCH
Confidence 5899999999999999999999999999999987 445556654 48889999999765 9999863
No 26
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.7e-18 Score=111.24 Aligned_cols=92 Identities=26% Similarity=0.541 Sum_probs=85.5
Q ss_pred HHHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEee
Q 033962 5 KAQETVSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGG 79 (107)
Q Consensus 5 ~~~~~~~~~~v~~y~~-----~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~ 79 (107)
.+.+..+..+|++|-. |.|.+.+.+..+|++++++|..+||..| +++++.++..++++|+|++|++|+++||
T Consensus 131 ~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D---eelRqglK~fSdWPTfPQlyI~GEFiGG 207 (227)
T KOG0911|consen 131 RLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTD---EELRQGLKEFSDWPTFPQLYVKGEFIGG 207 (227)
T ss_pred HHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCC---HHHHHHhhhhcCCCCccceeECCEeccC
Confidence 5566778889999966 8999999999999999999999999999 7899999999999999999999999999
Q ss_pred cHHHHHHHHcCCcHHHHHhc
Q 033962 80 CDSTTALHREGKLVPLLTEA 99 (107)
Q Consensus 80 ~~~~~~~~~~~~l~~~L~~~ 99 (107)
+|.+.+++++|+|...|+++
T Consensus 208 lDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 208 LDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred cHHHHHHhhcccHHHHhhcC
Confidence 99999999999999998763
No 27
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.75 E-value=1.4e-17 Score=97.12 Aligned_cols=80 Identities=13% Similarity=0.225 Sum_probs=69.5
Q ss_pred EEEEEeCCC------hhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcC----CCceeEEEECCeEEeecHHHH
Q 033962 15 VVVFSKTLC------PFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTG----QKTVPNVFIGGKHIGGCDSTT 84 (107)
Q Consensus 15 v~~y~~~~C------p~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~----~~~vP~i~i~g~~ig~~~~~~ 84 (107)
|++|+++-- ..|+.++.+|+.++|+|+++||+.+ ++.++++.+.+| ..++|+||+||+++||++++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d---~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN---EENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC---HHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 677776422 3688999999999999999999987 667778888865 489999999999999999999
Q ss_pred HHHHcCCcHHHHH
Q 033962 85 ALHREGKLVPLLT 97 (107)
Q Consensus 85 ~~~~~~~l~~~L~ 97 (107)
.+.++|.|.++|+
T Consensus 79 ~l~e~g~L~~lLk 91 (92)
T cd03030 79 EAKENNTLEEFLK 91 (92)
T ss_pred HHHhCCCHHHHhC
Confidence 9999999999985
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.73 E-value=2.6e-17 Score=91.35 Aligned_cols=65 Identities=34% Similarity=0.637 Sum_probs=57.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCD 81 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~ 81 (107)
+|++|+.+|||+|++++.+|++.+++|..+|++.+ .+..+++.+.+|..++|+++++|+.+.|++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~---~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~ 65 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD---SAAREEVLKVLGQRGVPVIVIGHKIIVGFD 65 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC---HHHHHHHHHHhCCCcccEEEECCEEEeeCC
Confidence 48999999999999999999999999999999876 445567788889999999999999988875
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.66 E-value=8.1e-16 Score=85.16 Aligned_cols=66 Identities=29% Similarity=0.728 Sum_probs=58.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDS 82 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~ 82 (107)
+|++|+.+|||+|++++.+|++.+++|..++++.+ ....+++.+.++..++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~---~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED---PEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC---HHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 47999999999999999999999999999999875 4555677777788999999999999999874
No 30
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.65 E-value=1.3e-15 Score=85.51 Aligned_cols=65 Identities=18% Similarity=0.522 Sum_probs=53.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhc-CCCceeEEEE-CCeEEeecH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWT-GQKTVPNVFI-GGKHIGGCD 81 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~-~~~~vP~i~i-~g~~ig~~~ 81 (107)
+|++|+.+|||+|++++.+|++++++|+.+|++.++ ...+++...+ |..++|++++ ||..+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~---~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDE---GAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCH---hHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 489999999999999999999999999999998773 3445666665 8899999976 667776554
No 31
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=99.60 E-value=5.2e-16 Score=93.59 Aligned_cols=92 Identities=18% Similarity=0.269 Sum_probs=63.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeec--HHHHHHHHcCCc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGC--DSTTALHREGKL 92 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~--~~~~~~~~~~~l 92 (107)
|++|+.++||+|++|+.||+++|++|+++|+..++...+....+....|.+....+--.|..+... ++-....+..++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~s~~e~ 80 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLPSLSEEEA 80 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccccCCHHHH
Confidence 589999999999999999999999999999998876544444545554433222332334322211 110112234568
Q ss_pred HHHHHhcCcccccc
Q 033962 93 VPLLTEAGAVAKTA 106 (107)
Q Consensus 93 ~~~L~~~~~~~~~~ 106 (107)
.++|.+++.+++||
T Consensus 81 ~~~l~~~p~LikRP 94 (111)
T cd03036 81 LELLSSDGMLIKRP 94 (111)
T ss_pred HHHHHhCcCeeeCC
Confidence 89999999999999
No 32
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.58 E-value=8.6e-15 Score=80.44 Aligned_cols=59 Identities=24% Similarity=0.426 Sum_probs=50.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEee
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGG 79 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~ 79 (107)
.|++|+.+|||+|+.++.+|++. +++|..+|++.+ +++.+.+|..++|++++||+.++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~-------~~l~~~~~i~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF-------PDLADEYGVMSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC-------HhHHHHcCCcccCEEEECCEEEEe
Confidence 58999999999999999999876 578888888766 256778899999999999987753
No 33
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=99.58 E-value=1.1e-15 Score=91.14 Aligned_cols=91 Identities=14% Similarity=0.234 Sum_probs=62.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE-ECCeEEeecHHH-HHHHHcCCc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF-IGGKHIGGCDST-TALHREGKL 92 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~-i~g~~ig~~~~~-~~~~~~~~l 92 (107)
|++|+.++||+|++|+.||+++|++|+++|+..++...+...++....+.. +-.++ -++......... ...++..++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~~~-~~~li~~~~~~~~~l~~~~~~~ls~~e~ 79 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLGLG-VEDLFNTRGTPYRKLGLADKDELSDEEA 79 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcCCC-HHHHHhcCCchHHHcCCccccCCCHHHH
Confidence 579999999999999999999999999999988765544444444444421 22222 233322221111 223446778
Q ss_pred HHHHHhcCcccccc
Q 033962 93 VPLLTEAGAVAKTA 106 (107)
Q Consensus 93 ~~~L~~~~~~~~~~ 106 (107)
.++|.+++.+++||
T Consensus 80 ~~~l~~~p~LikRP 93 (105)
T cd02977 80 LELMAEHPKLIKRP 93 (105)
T ss_pred HHHHHhCcCeeeCC
Confidence 99999999999999
No 34
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=99.55 E-value=1.9e-15 Score=93.60 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=63.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCcHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVP 94 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l~~ 94 (107)
|++|+.++||+|++|+.||+++|++|+++|+..++...+....+.+.+|.+.--.+--.|..+.....-....+..++.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~~~~ls~~e~i~ 81 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVDVESLSLQDLIK 81 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCCcccCCHHHHHH
Confidence 88999999999999999999999999999999887655555555555533211122223433322211112233456888
Q ss_pred HHHhcCcccccc
Q 033962 95 LLTEAGAVAKTA 106 (107)
Q Consensus 95 ~L~~~~~~~~~~ 106 (107)
+|.+++.+++||
T Consensus 82 ll~~~p~LikRP 93 (131)
T PRK01655 82 LISDNPGLLRRP 93 (131)
T ss_pred HHHhCcceEeCC
Confidence 999999999998
No 35
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=99.55 E-value=4.6e-15 Score=91.90 Aligned_cols=91 Identities=14% Similarity=0.235 Sum_probs=66.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE-ECCeEEeecHHHHHHHHcCCcH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF-IGGKHIGGCDSTTALHREGKLV 93 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~-i~g~~ig~~~~~~~~~~~~~l~ 93 (107)
|++|+.++|++|++|+.||++++++|+++|+..++...+....+.+.+|.+ +-.++ -.+........-....+..++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~-~~~lin~~~~~~k~L~~~~~~ls~~e~i 80 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTKTENG-IESIVSSKNRYAKALDCDIEELSVNEVI 80 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHHhCCC-HHHhhccCcHHHHhCCcchhcCCHHHHH
Confidence 789999999999999999999999999999998877766666666665532 22222 2444333322222334456688
Q ss_pred HHHHhcCcccccc
Q 033962 94 PLLTEAGAVAKTA 106 (107)
Q Consensus 94 ~~L~~~~~~~~~~ 106 (107)
++|.++|.+++||
T Consensus 81 ~ll~~~P~LikRP 93 (132)
T PRK13344 81 DLIQENPRILKSP 93 (132)
T ss_pred HHHHhCccceeCc
Confidence 9999999999998
No 36
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=99.54 E-value=9.2e-15 Score=88.85 Aligned_cols=92 Identities=12% Similarity=0.250 Sum_probs=70.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHH--HHHHHcCCc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDST--TALHREGKL 92 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~--~~~~~~~~l 92 (107)
|++|+.++||+|++|+.||++++++|+++|+..++...+....+.+..|...-..+--.|..+...... ...++..++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~~~~~~~ls~~e~ 80 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNTSNTFLDLSDKEA 80 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCchhhcccCCHHHH
Confidence 579999999999999999999999999999998866655555666666654344555566655544321 123456778
Q ss_pred HHHHHhcCcccccc
Q 033962 93 VPLLTEAGAVAKTA 106 (107)
Q Consensus 93 ~~~L~~~~~~~~~~ 106 (107)
.++|.+++.+++||
T Consensus 81 ~~~i~~~p~LikRP 94 (117)
T TIGR01617 81 LELLAEDPALLRRP 94 (117)
T ss_pred HHHHHhCcceEecC
Confidence 99999999999999
No 37
>PRK12559 transcriptional regulator Spx; Provisional
Probab=99.53 E-value=3.9e-15 Score=92.13 Aligned_cols=92 Identities=12% Similarity=0.178 Sum_probs=65.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCcHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVP 94 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l~~ 94 (107)
|++|+.++|++|++|+.||+++|++|+++|+..++...+....+.+.+|.+.-..+--.|..+.....-..-.+..++.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~~~ls~~e~i~ 81 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINIEELSLNEFYK 81 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCcccCCHHHHHH
Confidence 78999999999999999999999999999999987766666666666543322222234433322211112233456889
Q ss_pred HHHhcCcccccc
Q 033962 95 LLTEAGAVAKTA 106 (107)
Q Consensus 95 ~L~~~~~~~~~~ 106 (107)
+|.++|.+++||
T Consensus 82 ll~~~P~LikRP 93 (131)
T PRK12559 82 LIIEHPLMLRRP 93 (131)
T ss_pred HHHhCcceEeCC
Confidence 999999999999
No 38
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=99.52 E-value=1e-14 Score=87.16 Aligned_cols=90 Identities=13% Similarity=0.167 Sum_probs=64.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHH-HHHHHcCCcH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDST-TALHREGKLV 93 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~-~~~~~~~~l~ 93 (107)
|++|+.++|+.|++|+.||+++|++|+++|+..++...+....+.+..|. -..+--.|........- .+..+..++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g~--~~li~~~~~~yk~l~l~~~~~~s~~e~~ 78 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVGW--ETLLNKRGTTWRKLDDAQKAALDAAKAI 78 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhCh--HHHHccCchHHHhCChhhhccCCHHHHH
Confidence 58999999999999999999999999999999987776666666665551 11222234333222111 1223456788
Q ss_pred HHHHhcCcccccc
Q 033962 94 PLLTEAGAVAKTA 106 (107)
Q Consensus 94 ~~L~~~~~~~~~~ 106 (107)
++|.+++.+++||
T Consensus 79 ~~l~~~p~LikRP 91 (105)
T cd03035 79 ALMLEHPSLIKRP 91 (105)
T ss_pred HHHHhCcCeeecc
Confidence 9999999999999
No 39
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.51 E-value=2.8e-13 Score=76.51 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=59.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE--CCeEEeecHHHHHHHHc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI--GGKHIGGCDSTTALHRE 89 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i--~g~~ig~~~~~~~~~~~ 89 (107)
+++|+.++||+|++++.+|+++|++|+.++++.. ....+++...++..++|++.. +|..+.++..|.+++++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKG---SPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCC---hHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence 6899999999999999999999999999999754 223456677788899999987 46788888888877654
No 40
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=99.50 E-value=9.1e-15 Score=88.65 Aligned_cols=92 Identities=12% Similarity=0.192 Sum_probs=63.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCcHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVP 94 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l~~ 94 (107)
|++|+.++||+|++|+.+|+++|++|+++|+..++...+....+.+..|.+.--.+--+|..+.....-..-++..++.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~~~ls~~e~i~ 81 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDIDELSLSELIR 81 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCcccCCHHHHHH
Confidence 78999999999999999999999999999998886555555555555543211122224433322211112234456889
Q ss_pred HHHhcCcccccc
Q 033962 95 LLTEAGAVAKTA 106 (107)
Q Consensus 95 ~L~~~~~~~~~~ 106 (107)
+|.+++.+++||
T Consensus 82 ~l~~~p~LikRP 93 (115)
T cd03032 82 LISEHPSLLRRP 93 (115)
T ss_pred HHHhChhheeCC
Confidence 999999999998
No 41
>PRK10026 arsenate reductase; Provisional
Probab=99.48 E-value=1.9e-14 Score=89.78 Aligned_cols=94 Identities=9% Similarity=0.085 Sum_probs=68.0
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCc
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKL 92 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l 92 (107)
..|++|+.++|+.|++|+.||++++++|+++|+..++...+....+.+.+|...-..+--.|..+.....-...++..++
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~~~ls~~e~ 81 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAEDKFTDDQL 81 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCccCCCHHHH
Confidence 46899999999999999999999999999999988876666555666666643233333344433322211122345668
Q ss_pred HHHHHhcCcccccc
Q 033962 93 VPLLTEAGAVAKTA 106 (107)
Q Consensus 93 ~~~L~~~~~~~~~~ 106 (107)
.++|.++|.+++||
T Consensus 82 l~ll~~~P~LIKRP 95 (141)
T PRK10026 82 IDFMLQHPILINRP 95 (141)
T ss_pred HHHHHhCccceeCc
Confidence 89999999999998
No 42
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.3e-13 Score=91.95 Aligned_cols=86 Identities=28% Similarity=0.538 Sum_probs=76.6
Q ss_pred CCcEEEEEe------CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCC----CceeEEEECCeEEeecH
Q 033962 12 SNSVVVFSK------TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ----KTVPNVFIGGKHIGGCD 81 (107)
Q Consensus 12 ~~~v~~y~~------~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~----~~vP~i~i~g~~ig~~~ 81 (107)
...|++|++ .+=-.|..++.+|+.+++.|.++||.++ ..++++|+...|. .++|.+||+|++|||.+
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd---~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgae 206 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMD---SEFREELQELLGEDEKAVSLPRVFVKGRYIGGAE 206 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEeccccc---HHHHHHHHHHHhcccccCccCeEEEccEEeccHH
Confidence 346999987 3567899999999999999999999999 6777788877764 68899999999999999
Q ss_pred HHHHHHHcCCcHHHHHhcC
Q 033962 82 STTALHREGKLVPLLTEAG 100 (107)
Q Consensus 82 ~~~~~~~~~~l~~~L~~~~ 100 (107)
++..+.+.|.|.++|+..+
T Consensus 207 eV~~LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 207 EVVRLNEEGKLGKLLKGIP 225 (281)
T ss_pred HhhhhhhcchHHHHHhcCC
Confidence 9999999999999999887
No 43
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=99.47 E-value=2e-14 Score=86.87 Aligned_cols=91 Identities=10% Similarity=0.086 Sum_probs=62.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCcH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLV 93 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l~ 93 (107)
.|++|+.++|+.|++|+.||+++|++|+++|+..++...+....+.+..|. -+.+--.|..+.........++..++.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~--~~l~n~~~~~~r~~~~~~~~ls~~e~~ 78 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDLPV--AEWFNPAAPRVKSGEVVPEALDEEEAL 78 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHcCH--HHHHhcccHHHHhcCCCccCCCHHHHH
Confidence 378999999999999999999999999999999887665555555555442 111111222222111111222345688
Q ss_pred HHHHhcCcccccc
Q 033962 94 PLLTEAGAVAKTA 106 (107)
Q Consensus 94 ~~L~~~~~~~~~~ 106 (107)
++|.++|.+++||
T Consensus 79 ~ll~~~P~LikRP 91 (113)
T cd03033 79 ALMIADPLLIRRP 91 (113)
T ss_pred HHHHhCcceeeCC
Confidence 9999999999999
No 44
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.45 E-value=1.6e-12 Score=76.65 Aligned_cols=81 Identities=15% Similarity=0.321 Sum_probs=61.2
Q ss_pred cEEEEEeCCCh------hHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcC---------CCceeEEEECCeEEe
Q 033962 14 SVVVFSKTLCP------FCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTG---------QKTVPNVFIGGKHIG 78 (107)
Q Consensus 14 ~v~~y~~~~Cp------~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~---------~~~vP~i~i~g~~ig 78 (107)
.|.+|+++.-. .|+++..+|+.++|+|+.+||..+ ++.++.+.+..| ..-.|+||.||+++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~---e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD---EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT----HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC---HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 47788775433 466999999999999999999997 667777787763 344589999999999
Q ss_pred ecHHHHHHHHcCCcHHHHH
Q 033962 79 GCDSTTALHREGKLVPLLT 97 (107)
Q Consensus 79 ~~~~~~~~~~~~~l~~~L~ 97 (107)
+++++.++.+++.|.++|+
T Consensus 79 dye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 79 DYEDFEEANENGELEEFLK 97 (99)
T ss_dssp EHHHHHHHHCTT-HHHHHT
T ss_pred eHHHHHHHHhhCHHHHHhC
Confidence 9999999999999999986
No 45
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=99.43 E-value=6e-14 Score=84.72 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=66.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCcHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVP 94 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l~~ 94 (107)
|++|+.++|+.|++|+.||++++++|+++|+...+-..+....+.+.+|...--.+-..|........-...++..++.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~~~ls~~e~i~ 80 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLADPELSDEELID 80 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCccCCCHHHHHH
Confidence 57999999999999999999999999999998887766666677777764322222223332222111112334567888
Q ss_pred HHHhcCcccccc
Q 033962 95 LLTEAGAVAKTA 106 (107)
Q Consensus 95 ~L~~~~~~~~~~ 106 (107)
+|.++|.+++||
T Consensus 81 ll~~~P~LikRP 92 (112)
T cd03034 81 AMAAHPILIERP 92 (112)
T ss_pred HHHhCcCcccCC
Confidence 999999999999
No 46
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.43 E-value=3e-12 Score=72.03 Aligned_cols=70 Identities=19% Similarity=0.567 Sum_probs=57.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEEC----CeEEeecHHHHHHHHc
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIG----GKHIGGCDSTTALHRE 89 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~----g~~ig~~~~~~~~~~~ 89 (107)
++++|+.+.||+|++++.+|+.+|++|+.++++... ..++ ...+..++|+++.+ |..+.++..|.++++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-----~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~ 74 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-----RKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKT 74 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-----HHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHH
Confidence 588999999999999999999999999999986432 2233 34678899999986 7889888888876643
No 47
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.43 E-value=1.8e-12 Score=70.49 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=59.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
+++|+.++||+|++++.+|+..+++|+.++++....... ++...++..++|+++.+|..++++..+.+++
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl 70 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEYL 70 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 368999999999999999999999999999987654322 4667788999999999999999988777654
No 48
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.41 E-value=2.1e-12 Score=71.68 Aligned_cols=69 Identities=19% Similarity=0.369 Sum_probs=56.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEEC-CeEEeecHHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIG-GKHIGGCDSTTALHR 88 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~-g~~ig~~~~~~~~~~ 88 (107)
+++|+.++||+|++++.+|..+|++|+.+.++.... . .. .+..+...+|+++.+ |..++++..|.++++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~--~--~~-~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDE--A--TP-IRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCch--H--HH-HHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 368999999999999999999999999998875431 1 12 345677899999986 889999998887764
No 49
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=99.40 E-value=1.2e-13 Score=83.67 Aligned_cols=92 Identities=9% Similarity=0.079 Sum_probs=65.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCc-eeEEEECCeEEeecHHHHHHHHcCCcH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKT-VPNVFIGGKHIGGCDSTTALHREGKLV 93 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~-vP~i~i~g~~ig~~~~~~~~~~~~~l~ 93 (107)
|++|+.++|+.|++|+.||++++++|+++|+...+-..+....+.+..|... -..+--.+........-.+.++..++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~~~ls~~e~i 80 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSDPNLSDQELL 80 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCccCCCHHHHH
Confidence 5799999999999999999999999999999988777666666666665331 112223343332221111223345688
Q ss_pred HHHHhcCcccccc
Q 033962 94 PLLTEAGAVAKTA 106 (107)
Q Consensus 94 ~~L~~~~~~~~~~ 106 (107)
++|.++|.+++||
T Consensus 81 ~~l~~~P~LikRP 93 (114)
T TIGR00014 81 DAMVAHPILLERP 93 (114)
T ss_pred HHHHHCcCcccCC
Confidence 9999999999999
No 50
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.39 E-value=2.1e-12 Score=75.04 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=56.8
Q ss_pred hHHHhhccCCcEEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEe
Q 033962 4 PKAQETVSSNSVVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIG 78 (107)
Q Consensus 4 ~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig 78 (107)
+.++++-++..|.+|+.+|||+|..+..++.+. ++++..+|++.. ++++..+|..++|++++||+.++
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-------~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-------QDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-------HHHHHHcCCccCCEEEECCEEEE
Confidence 445566667789999999999999999998765 678888998876 36678899999999999998765
Q ss_pred e
Q 033962 79 G 79 (107)
Q Consensus 79 ~ 79 (107)
.
T Consensus 78 ~ 78 (89)
T cd03026 78 F 78 (89)
T ss_pred e
Confidence 3
No 51
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=99.39 E-value=2.4e-13 Score=83.58 Aligned_cols=91 Identities=10% Similarity=0.085 Sum_probs=62.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCcH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLV 93 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l~ 93 (107)
.+++|+.++|..|++|+.||+++|++|+++|+..++-..+....+.+..|.. ..+--.|..+...+......+..++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~~g~~--~lin~~~~~~r~l~~~~~~ls~~e~i 79 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGNKPVG--SWFNRAAPRVKSGEVNPDSIDEASAL 79 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHHcCHH--HHHhccchHhhhCCCCcccCCHHHHH
Confidence 4789999999999999999999999999999988876655555555444311 11111233221111111223345688
Q ss_pred HHHHhcCcccccc
Q 033962 94 PLLTEAGAVAKTA 106 (107)
Q Consensus 94 ~~L~~~~~~~~~~ 106 (107)
++|.++|.++|||
T Consensus 80 ~lm~~~P~LIKRP 92 (126)
T TIGR01616 80 ALMVSDPLLIRRP 92 (126)
T ss_pred HHHHhCcCeEeCC
Confidence 8999999999999
No 52
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=99.37 E-value=3.2e-13 Score=82.02 Aligned_cols=93 Identities=12% Similarity=0.202 Sum_probs=65.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcCCcH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLV 93 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l~ 93 (107)
.|++|+.|.|..|++|+.||+++|++|+++|+...+...+....+.+..|...-..+--.|......+.........++.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~~~~~~~~~~~ 81 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELNLDKEDLSDEELI 81 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcCCcccccChHHHH
Confidence 48999999999999999999999999999999998877776667777766442223333454443333111122333445
Q ss_pred HHHHhcCcccccc
Q 033962 94 PLLTEAGAVAKTA 106 (107)
Q Consensus 94 ~~L~~~~~~~~~~ 106 (107)
..|-+++.+++||
T Consensus 82 ~~i~~~~~LikRP 94 (117)
T COG1393 82 EALLENPSLIKRP 94 (117)
T ss_pred HHHHhChhhccCC
Confidence 5566666999998
No 53
>PRK10853 putative reductase; Provisional
Probab=99.37 E-value=6.5e-13 Score=80.85 Aligned_cols=90 Identities=13% Similarity=0.198 Sum_probs=65.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHH-HHH-HcCCc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTT-ALH-REGKL 92 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~-~~~-~~~~l 92 (107)
|++|+.++|..|++|+.||++++++|+++|+..++...+....+....|.. +.+--.|..+.....-. ... +..++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~--~l~n~~~~~~r~L~~~~k~~~~~~~e~ 79 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELGWE--ALLNTRGTTWRKLDETQRNAITDAASA 79 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcCHH--HHHhcCCchHHhCCHhHhhcCCCHHHH
Confidence 789999999999999999999999999999988876655555555555522 22223455444333222 222 23568
Q ss_pred HHHHHhcCcccccc
Q 033962 93 VPLLTEAGAVAKTA 106 (107)
Q Consensus 93 ~~~L~~~~~~~~~~ 106 (107)
.++|.++|.+++||
T Consensus 80 ~~ll~~~P~LikRP 93 (118)
T PRK10853 80 AALMLEQPAIIKRP 93 (118)
T ss_pred HHHHHhCcCeeecc
Confidence 88999999999999
No 54
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.35 E-value=1.5e-11 Score=68.23 Aligned_cols=67 Identities=18% Similarity=0.349 Sum_probs=56.4
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEEC-CeEEeecHHHHHH
Q 033962 16 VVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIG-GKHIGGCDSTTAL 86 (107)
Q Consensus 16 ~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~-g~~ig~~~~~~~~ 86 (107)
++|+.++||+|++++.+|+++|++|+.++++..... +++.+.++..++|++..+ |..+.++..|.++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~----~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKP----AEMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCC----HHHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 689999999999999999999999999998875322 466777888999999985 8888888777654
No 55
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.34 E-value=2e-11 Score=67.74 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=58.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
+++|+.++||+|++++..|+..|++|+.++++..... +++.+.++.+++|++..+|..+.+...|.+++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 71 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPP----EDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDE 71 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCC----HHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHh
Confidence 4799999999999999999999999999988765322 3556667788999999999988888888776643
No 56
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.29 E-value=1.8e-11 Score=67.88 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=56.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-CCeEEeecHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-GGKHIGGCDSTTALH 87 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-~g~~ig~~~~~~~~~ 87 (107)
+++|+.++||+|++++.+|..++++|+.+.++.... ....+++.+.++...+|++.+ +|..+.+...|..++
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yL 73 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAG-EQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYL 73 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccC-ccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHh
Confidence 479999999999999999999999999988875421 111245677788899999986 677888887776654
No 57
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.28 E-value=6e-11 Score=68.69 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=60.0
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEEC-CeEEeecHHHHHHH
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIG-GKHIGGCDSTTALH 87 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~-g~~ig~~~~~~~~~ 87 (107)
...+++|+.+.||+|++++.+|..+|++|+.++++.... .+++.+.++...+|++..+ |..+.+...|.+++
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~----~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yL 88 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDK----PDWFLEKNPQGKVPALEIDEGKVVYESLIICEYL 88 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCC----cHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhh
Confidence 346899999999999999999999999999999876432 1356677788999999997 88898888777664
No 58
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.28 E-value=5.7e-11 Score=66.64 Aligned_cols=69 Identities=13% Similarity=0.307 Sum_probs=60.0
Q ss_pred EEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 17 VFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 17 ~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
+|+.++||+|++++.+|..++++|+.++++.... .+++...++..++|++..+|..+.++..|.+++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~----~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK----RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEE 69 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST----SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc----hhHHHhhcccccceEEEECCEEEeCHHHHHHHHHH
Confidence 6899999999999999999999999999986532 35667788899999999999999999988876653
No 59
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.28 E-value=3.9e-11 Score=66.80 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=59.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHR 88 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~ 88 (107)
+++|+.+.||+|++++.+|+..|++|+.++++.... ....+++.+.++...+|++..+|..+.+...+..++.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKG-EHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLV 73 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccC-CcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 479999999999999999999999999998875432 2223567778888899999999988888887777653
No 60
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.28 E-value=3.7e-11 Score=67.96 Aligned_cols=55 Identities=25% Similarity=0.569 Sum_probs=43.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----cC--CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCe
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQ----LG--VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGK 75 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~----~~--i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~ 75 (107)
.|++|+.+|||+|+.+...|.+ ++ +.+..+|++.++ ++.+.+|..++|+++++|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-------~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-------QKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-------HHHHHcCCccCCEEEECCE
Confidence 5889999999999999999875 34 445566665542 4456789999999999987
No 61
>PHA02125 thioredoxin-like protein
Probab=99.24 E-value=7.9e-11 Score=66.17 Aligned_cols=55 Identities=15% Similarity=0.444 Sum_probs=43.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
|++|+.+||++|+.++.+|++. .+.+++++.++. .++...++..++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~-----~~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEG-----VELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCC-----HHHHHHcCCceeCeEE-CCEEE
Confidence 7899999999999999999865 456666665532 3678888999999987 66544
No 62
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=99.20 E-value=4.6e-12 Score=76.16 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=59.7
Q ss_pred EEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecH-HHHHHHHcCCcHHHH
Q 033962 18 FSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCD-STTALHREGKLVPLL 96 (107)
Q Consensus 18 y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~-~~~~~~~~~~l~~~L 96 (107)
|+.+.|..|++|..||+++|++|+++|+...+-..+....+.+..|...-..+--.|..+.... .-...++..++.++|
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~~~~~~~~s~~e~i~~l 80 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELGKLKKDDLSDEELIELL 80 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTTHHHCTTSBHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhhhhhhhhhhhHHHHHHH
Confidence 8899999999999999999999999999998776666667777777542233333454443333 222345567888999
Q ss_pred HhcCcccccc
Q 033962 97 TEAGAVAKTA 106 (107)
Q Consensus 97 ~~~~~~~~~~ 106 (107)
.+++.+++||
T Consensus 81 ~~~p~LikRP 90 (110)
T PF03960_consen 81 LENPKLIKRP 90 (110)
T ss_dssp HHSGGGB-SS
T ss_pred HhChhheeCC
Confidence 9999999999
No 63
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.19 E-value=3.4e-11 Score=72.71 Aligned_cols=58 Identities=29% Similarity=0.554 Sum_probs=44.1
Q ss_pred hhccCCcEEEE-EeCCChhHHHHHHHHHhcC-----CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 8 ETVSSNSVVVF-SKTLCPFCVSVKELFQQLG-----VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 8 ~~~~~~~v~~y-~~~~Cp~C~~a~~~l~~~~-----i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
++.+...+++| +.+|||+|+.++++|++.. +.+..+|++.. +++...++..++|++++
T Consensus 18 ~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~-------~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 18 EMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED-------KEKAEKYGVERVPTTIF 81 (113)
T ss_pred HhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC-------HHHHHHcCCCcCCEEEE
Confidence 34445556554 7899999999999998753 46677777764 36788899999999966
No 64
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.19 E-value=2.3e-10 Score=63.34 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=58.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
+++|+.+.||+|++++.+|...|++|+.++++.... ....+++.+.+...++|++..+|..+.++..+.+++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl 72 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKG-ETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYL 72 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCc-ccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 478999999999999999999999999999875321 122345666777889999999999998888776653
No 65
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.18 E-value=1.5e-10 Score=65.28 Aligned_cols=54 Identities=19% Similarity=0.385 Sum_probs=42.2
Q ss_pred EEEEEeCCChhHHHH----HHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 15 VVVFSKTLCPFCVSV----KELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a----~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
|.+|+ +|||+|+.+ ..++++++..+++++++.. ++ ...+|..++|++++||+.+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~-------~~-a~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDM-------NE-ILEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH-------HH-HHHcCCCcCCEEEECCEEE
Confidence 56665 999999999 5566778888999999832 12 4457999999999999755
No 66
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.15 E-value=3.7e-10 Score=69.12 Aligned_cols=75 Identities=15% Similarity=0.279 Sum_probs=49.4
Q ss_pred HHhhcc-CCc-EEEEEeCCChhHHHHHHHHHh----cCCceEEEEcCCCCC--c--hHHHHHHHhhcC----CCceeEE-
Q 033962 6 AQETVS-SNS-VVVFSKTLCPFCVSVKELFQQ----LGVTFKAIELDKESD--G--SDIQSALAEWTG----QKTVPNV- 70 (107)
Q Consensus 6 ~~~~~~-~~~-v~~y~~~~Cp~C~~a~~~l~~----~~i~~~~~~i~~~~~--~--~~~~~~l~~~~~----~~~vP~i- 70 (107)
+.+.+. ... ++.|+++|||+|+.+.+.|++ .++++-++|++.+.. . .....++.+.++ ..++|++
T Consensus 16 ~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v 95 (122)
T TIGR01295 16 ALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFV 95 (122)
T ss_pred HHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEE
Confidence 444433 344 677899999999998888865 457788999986531 1 112234555544 5569988
Q ss_pred -EECCeEEeec
Q 033962 71 -FIGGKHIGGC 80 (107)
Q Consensus 71 -~i~g~~ig~~ 80 (107)
|.+|+.++..
T Consensus 96 ~~k~Gk~v~~~ 106 (122)
T TIGR01295 96 HITDGKQVSVR 106 (122)
T ss_pred EEeCCeEEEEE
Confidence 4589877655
No 67
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.11 E-value=5.8e-10 Score=62.34 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=59.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
+++|+.+.||+|++++..|+++|++|+.++++..... ...+++.+.++.+.+|++..||..+.++..|..++
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yL 72 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSE-HNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYL 72 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCc-cCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHh
Confidence 4789999999999999999999999999988764321 12246778888999999999999999888877664
No 68
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=99.10 E-value=5.9e-10 Score=63.54 Aligned_cols=53 Identities=23% Similarity=0.588 Sum_probs=43.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECC
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGG 74 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g 74 (107)
+|++|++++|+.|..|+..|... ++.++.+||+.+ +++...++. .+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d-------~~l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED-------PELFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT-------HHHHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC-------HHHHHHhcC-CCCEEEEcC
Confidence 48999999999999999999965 355788999966 356778886 599999988
No 69
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.08 E-value=2.3e-09 Score=59.75 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=56.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcC-CCceeEEEECCeEEeecHHHHHHHHc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTG-QKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~-~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
+++|+.+.||+|++++.+|...|++|+.++++..... .++.+... .+.+|++..+|..+.++..+.+++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~----~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~ 72 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKS----ELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDE 72 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCC----HHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHh
Confidence 4689999999999999999999999999887764221 24455555 47999999999999888888777653
No 70
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.07 E-value=9.8e-10 Score=75.05 Aligned_cols=81 Identities=20% Similarity=0.518 Sum_probs=63.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH------
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH------ 87 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~------ 87 (107)
.+++|.+.+||+|-+++.+|+.++++|..++++... +++++ ++.+..||.+.+.|+.+.+++.|+..+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~-----r~eIk-~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~ 163 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL-----RQEIK-WSSYKKVPILLIRGEQMVDSSVIISLLATYLQD 163 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh-----hhhcc-ccccccccEEEeccceechhHHHHHHHHHHhcc
Confidence 699999999999999999999999999999998653 33443 568899999999888888887776654
Q ss_pred HcCCcHHHHHhcC
Q 033962 88 REGKLVPLLTEAG 100 (107)
Q Consensus 88 ~~~~l~~~L~~~~ 100 (107)
....|.++++-.+
T Consensus 164 ~~q~l~eiiq~yP 176 (370)
T KOG3029|consen 164 KRQDLGEIIQMYP 176 (370)
T ss_pred CCCCHHHHHHhcc
Confidence 2444555544443
No 71
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.06 E-value=2.7e-09 Score=59.63 Aligned_cols=74 Identities=11% Similarity=0.135 Sum_probs=60.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
+++|+.+.||+|++++.+|...|++|+.+.++.... ....+.+.+.+..+.+|.+..+|..+.+...|.+++.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~ 75 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKG-EHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAE 75 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCcccc-ccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhh
Confidence 689999999999999999999999999988876422 12224567778889999999999999988888877643
No 72
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.06 E-value=1.8e-09 Score=62.81 Aligned_cols=65 Identities=18% Similarity=0.331 Sum_probs=55.5
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 21 TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
..||+|++++..|..++++|+.++++..... +.+.+.+..+.+|++..+|..+.+...|.+++++
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p----~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde 84 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKP----EDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEE 84 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCC----HHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHH
Confidence 6899999999999999999999999876432 4567788889999999999999999888877653
No 73
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.06 E-value=1.1e-09 Score=64.18 Aligned_cols=60 Identities=22% Similarity=0.432 Sum_probs=43.9
Q ss_pred EEEEEeCCChhHHHHHHHHHh------cCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECCeEEeecH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQ------LGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGGKHIGGCD 81 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~------~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g~~ig~~~ 81 (107)
+++|+.+||+.|+.+.+.+++ .++.+..+|++.+ .++....+..++|+++ -+|+.++...
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~-------~~l~~~~~v~~vPt~~i~~~g~~v~~~~ 84 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED-------QEIAEAAGIMGTPTVQFFKDKELVKEIS 84 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC-------HHHHHHCCCeeccEEEEEECCeEEEEEe
Confidence 556889999999999998876 2355666666654 3567788999999884 3787665443
No 74
>PHA02278 thioredoxin-like protein
Probab=99.04 E-value=3.6e-09 Score=62.95 Aligned_cols=74 Identities=12% Similarity=0.268 Sum_probs=51.1
Q ss_pred hHHHhhcc-CCc-EEEEEeCCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EEC
Q 033962 4 PKAQETVS-SNS-VVVFSKTLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIG 73 (107)
Q Consensus 4 ~~~~~~~~-~~~-v~~y~~~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~ 73 (107)
..+++.+. ... ++.|+++||++|+.+.+.+++. .+++..+|++.++.. .+.+.+.++..++|++ |-|
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d---~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD---REKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc---cHHHHHHCCCccccEEEEEEC
Confidence 44555544 333 4458999999999999888664 235677788765321 2457888999999988 458
Q ss_pred CeEEeec
Q 033962 74 GKHIGGC 80 (107)
Q Consensus 74 g~~ig~~ 80 (107)
|+.++..
T Consensus 82 G~~v~~~ 88 (103)
T PHA02278 82 GQLVKKY 88 (103)
T ss_pred CEEEEEE
Confidence 8866443
No 75
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.03 E-value=3.5e-09 Score=58.73 Aligned_cols=58 Identities=14% Similarity=0.350 Sum_probs=49.6
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 21 TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
++||+|++++.+|+..+++|+.++++... .+....+|++..+|..+.++..|.+++++
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 49999999999999999999999988642 34567899999999999999888876653
No 76
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.03 E-value=3.1e-09 Score=64.23 Aligned_cols=58 Identities=19% Similarity=0.432 Sum_probs=44.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC------CceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEee
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLG------VTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIGG 79 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~------i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig~ 79 (107)
|+.|+++|||.|+.+.+.|++.. +.+-.+|++.. +++.+.++..++|++ |-+|+.++.
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-------~~la~~~~V~~iPTf~~fk~G~~v~~ 83 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-------PDFNKMYELYDPPTVMFFFRNKHMKI 83 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-------HHHHHHcCCCCCCEEEEEECCEEEEE
Confidence 44599999999999999997652 34566777765 377888999999988 458887643
No 77
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1e-09 Score=75.44 Aligned_cols=81 Identities=22% Similarity=0.394 Sum_probs=58.2
Q ss_pred ccCCcE-EEEEeCCChhHHHHHHHHHhcCC------ceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEeec
Q 033962 10 VSSNSV-VVFSKTLCPFCVSVKELFQQLGV------TFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIGGC 80 (107)
Q Consensus 10 ~~~~~v-~~y~~~~Cp~C~~a~~~l~~~~i------~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig~~ 80 (107)
....+| +.||.|||+.|+.....|++.-- ..-.+|+|.+ +.+...+|..++|++ |.+|+.+-||
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~-------p~vAaqfgiqsIPtV~af~dGqpVdgF 113 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE-------PMVAAQFGVQSIPTVYAFKDGQPVDGF 113 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc-------hhHHHHhCcCcCCeEEEeeCCcCcccc
Confidence 334454 56999999999999999987632 3456777776 367888999999988 7899999888
Q ss_pred HHHHHHHHcCCcHHHHHhcC
Q 033962 81 DSTTALHREGKLVPLLTEAG 100 (107)
Q Consensus 81 ~~~~~~~~~~~l~~~L~~~~ 100 (107)
.... .+..+.++|+...
T Consensus 114 ~G~q---Pesqlr~~ld~~~ 130 (304)
T COG3118 114 QGAQ---PESQLRQFLDKVL 130 (304)
T ss_pred CCCC---cHHHHHHHHHHhc
Confidence 5332 2445555555543
No 78
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.98 E-value=6.9e-09 Score=57.60 Aligned_cols=69 Identities=13% Similarity=0.209 Sum_probs=55.6
Q ss_pred EEEEEeCCChhHHHHHHHHHh--cCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-CCeEEeecHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQ--LGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-GGKHIGGCDSTTALH 87 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~--~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-~g~~ig~~~~~~~~~ 87 (107)
+++|+.+.||+|++++.+|.. .+++|+.+.++..... +++....+...+|++.. +|..+.++..+.+++
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~----~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yL 72 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDD----ESLLAVNPLGKIPALVLDDGEALFDSRVICEYL 72 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCC----hHHHHhCCCCCCCEEEECCCCEEECHHHHHhhh
Confidence 478999999999999999999 8999999998753222 34566677889999975 788888888777654
No 79
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.1e-09 Score=68.65 Aligned_cols=59 Identities=25% Similarity=0.427 Sum_probs=45.0
Q ss_pred CCcE-EEEEeCCChhHHHHHHHHHhcC------CceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEE
Q 033962 12 SNSV-VVFSKTLCPFCVSVKELFQQLG------VTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHI 77 (107)
Q Consensus 12 ~~~v-~~y~~~~Cp~C~~a~~~l~~~~------i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~i 77 (107)
..+| +-|+++||..|+.+.+.|.++. +.+-.+|+|.+. ++...+++..+|++ |.||+.+
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~-------ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP-------ELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc-------chHhhcceeeeeEEEEEECCEEe
Confidence 3454 5599999999999999998753 344556666663 67889999999988 5688755
No 80
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.94 E-value=3.8e-09 Score=70.22 Aligned_cols=61 Identities=25% Similarity=0.406 Sum_probs=45.4
Q ss_pred HhhccCCcEEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECC
Q 033962 7 QETVSSNSVVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGG 74 (107)
Q Consensus 7 ~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g 74 (107)
+..-+...|++|+++|||+|+.+..++++. .+.+..+|++.. +++...+|..++|++++++
T Consensus 129 ~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-------~~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 129 QSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-------PDLAEKYGVMSVPKIVINK 194 (215)
T ss_pred HhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-------HHHHHHhCCccCCEEEEec
Confidence 333344567779999999999999999875 345555666655 3667788999999998754
No 81
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.94 E-value=3.5e-09 Score=61.82 Aligned_cols=74 Identities=27% Similarity=0.567 Sum_probs=50.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEeecHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIGGCDSTTAL 86 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig~~~~~~~~ 86 (107)
|+.|+++||++|+...+.|.+. ++.+-.+|++.. ..+.+.++..++|++ +.+|+....+.. .
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g---~ 90 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-------KELCKKYGVKSVPTIIFFKNGKEVKRYNG---P 90 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-------HHHHHHTTCSSSSEEEEEETTEEEEEEES---S
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhcc-------chhhhccCCCCCCEEEEEECCcEEEEEEC---C
Confidence 5668899999999999888653 345555666544 467888899999988 447876654431 1
Q ss_pred HHcCCcHHHHHh
Q 033962 87 HREGKLVPLLTE 98 (107)
Q Consensus 87 ~~~~~l~~~L~~ 98 (107)
.+...|.++|++
T Consensus 91 ~~~~~l~~~i~~ 102 (103)
T PF00085_consen 91 RNAESLIEFIEK 102 (103)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 223356666654
No 82
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.93 E-value=8.7e-09 Score=56.94 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=57.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
+++|+.+.|+.|.+++.+|..+|++|+.+.++..+. ....+++.+.++...+|++..+|..+.++..|..++
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKG-EQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYL 72 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccC-CcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 368989999999999999999999999988876422 112245667778899999999999998888777654
No 83
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.91 E-value=2.3e-08 Score=60.33 Aligned_cols=70 Identities=24% Similarity=0.283 Sum_probs=49.5
Q ss_pred HHHhhcc-CCc-EEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCe
Q 033962 5 KAQETVS-SNS-VVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGK 75 (107)
Q Consensus 5 ~~~~~~~-~~~-v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~ 75 (107)
.+.+.+. ... ++.|+.+||+.|+.+...|+++ ++.+..+|++.. ..+.+.++..++|++ |.+|+
T Consensus 14 ~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~-------~~l~~~~~v~~vPt~l~fk~G~ 86 (113)
T cd02989 14 EFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA-------PFLVEKLNIKVLPTVILFKNGK 86 (113)
T ss_pred HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC-------HHHHHHCCCccCCEEEEEECCE
Confidence 3444443 334 4558889999999999988763 456666666665 367888899999988 55898
Q ss_pred EEeecH
Q 033962 76 HIGGCD 81 (107)
Q Consensus 76 ~ig~~~ 81 (107)
.++...
T Consensus 87 ~v~~~~ 92 (113)
T cd02989 87 TVDRIV 92 (113)
T ss_pred EEEEEE
Confidence 775543
No 84
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.91 E-value=7.4e-09 Score=60.77 Aligned_cols=64 Identities=14% Similarity=0.396 Sum_probs=45.9
Q ss_pred HHHhhccCCcEEEEEeCCChhHHHHHHHHHhc-------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE--CCe
Q 033962 5 KAQETVSSNSVVVFSKTLCPFCVSVKELFQQL-------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI--GGK 75 (107)
Q Consensus 5 ~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i--~g~ 75 (107)
.++++++...++.|+++|||+|+...+.+.+. ++.+..+|.+.. ..+.+.++..++|++++ +|+
T Consensus 10 ~f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-------~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 10 NWTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-------PGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred hHHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-------HhHHHHcCCcccCEEEEeCCCC
Confidence 44555666667889999999999988888654 344455666544 25677889999999854 665
No 85
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.91 E-value=3.3e-09 Score=62.72 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=41.6
Q ss_pred HHHhhccCCc--EEEEEeCCChhHHHHHHHH-------Hhc--CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE
Q 033962 5 KAQETVSSNS--VVVFSKTLCPFCVSVKELF-------QQL--GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF 71 (107)
Q Consensus 5 ~~~~~~~~~~--v~~y~~~~Cp~C~~a~~~l-------~~~--~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~ 71 (107)
.+.++++..+ ++.|+++||++|+.....+ ..+ ++.+..+|++.+ ......+.+.++..++|+++
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKN---DPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCC---CHHHHHHHHHcCCCCCCEEE
Confidence 3455554444 4568999999999887654 111 344555665544 22235778888999999883
No 86
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.90 E-value=6.8e-09 Score=60.34 Aligned_cols=59 Identities=20% Similarity=0.370 Sum_probs=40.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC----CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECCeEEe
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLG----VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGGKHIG 78 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~----i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g~~ig 78 (107)
++.|+++||++|+.+...+.+.. -.+....++.+.. ..+.+.++..++|+++ -+|+.+.
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-----PQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-----HHHHHHcCCCCCCEEEEEeCCEEee
Confidence 55689999999999988886532 2233344443322 3677788999999884 4777654
No 87
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.90 E-value=1.9e-08 Score=56.62 Aligned_cols=55 Identities=29% Similarity=0.668 Sum_probs=40.7
Q ss_pred cEEEEEeCCChhHHHHHHHH----HhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 14 SVVVFSKTLCPFCVSVKELF----QQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l----~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
+|.+| .++||+|..+...+ .+++++++.+|+... +++ ..+|..++|++++||+.+
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~-------~~~-~~ygv~~vPalvIng~~~ 60 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIEDF-------EEI-EKYGVMSVPALVINGKVV 60 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTH-------HHH-HHTT-SSSSEEEETTEEE
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCH-------HHH-HHcCCCCCCEEEECCEEE
Confidence 36674 67799999777755 456888888887322 455 788999999999999843
No 88
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.89 E-value=2.9e-08 Score=55.25 Aligned_cols=71 Identities=10% Similarity=0.043 Sum_probs=58.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHR 88 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~ 88 (107)
++++|+.+.|+.|++++.+|...+++|+.+.++.+ ...+++...+..+.+|++..+|..+.+...|..++.
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE----EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG 71 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH----HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 36788888999999999999999999999988752 223356666677899999999999998888877664
No 89
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.87 E-value=8.3e-09 Score=57.12 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=51.5
Q ss_pred CChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-CCeEEeecHHHHHHHHc
Q 033962 22 LCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-GGKHIGGCDSTTALHRE 89 (107)
Q Consensus 22 ~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-~g~~ig~~~~~~~~~~~ 89 (107)
.||+|++++-+|..+|++|+...+...+......+++.+.++..+||++.. +|+.+.++..|.+++++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 499999999999999999988777332222222246677888999999997 89999999988887754
No 90
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=98.87 E-value=2.8e-08 Score=65.62 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=61.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
.+++|+.+.||+|++++-+|.+.|++|+.+.++.... .+++.+.+..+.||++..||..+.++..|..++.+
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~----~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~ 81 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNL----PQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDE 81 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccC----CHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHH
Confidence 4899999999999999999999999999999986422 24567778889999999999999999888887654
No 91
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.86 E-value=8.2e-09 Score=68.63 Aligned_cols=67 Identities=27% Similarity=0.501 Sum_probs=49.3
Q ss_pred HHhhccCCcEEEEEe---CCChhHHHHHHHHHhcC-----CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE--CCe
Q 033962 6 AQETVSSNSVVVFSK---TLCPFCVSVKELFQQLG-----VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI--GGK 75 (107)
Q Consensus 6 ~~~~~~~~~v~~y~~---~~Cp~C~~a~~~l~~~~-----i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i--~g~ 75 (107)
+..+.+...+++|+. +|||+|+.+.+++++.. +.+..++++.+.. ..+.+.++..++|++.+ ||+
T Consensus 14 ~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-----~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 14 LKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-----KEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred HHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-----HHHHHHcCCCccCEEEEEeCCe
Confidence 344445666888988 99999999999997752 4456777776532 37788899999999844 665
Q ss_pred EE
Q 033962 76 HI 77 (107)
Q Consensus 76 ~i 77 (107)
.+
T Consensus 89 ~~ 90 (215)
T TIGR02187 89 DG 90 (215)
T ss_pred ee
Confidence 54
No 92
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.85 E-value=3.7e-08 Score=55.04 Aligned_cols=74 Identities=8% Similarity=0.122 Sum_probs=58.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
+++|+.+.+++|++++..|...|++|+.+.++.... ....+++...+....+|++..+|..+.+...|..++.+
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~ 74 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKG-EQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLAR 74 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCC-CcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHh
Confidence 468999999999999999999999999988875422 11223566677889999999999888888887776643
No 93
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.85 E-value=3.2e-08 Score=54.77 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=56.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
+++|..+.|+.|++++-+|...|++|+.+.++... .....+...+....+|++..+|..+.++..|..++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEE---WPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHH---hhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence 36888899999999999999999999999887542 11123556677889999999999999888887765
No 94
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.85 E-value=1.3e-08 Score=61.10 Aligned_cols=58 Identities=21% Similarity=0.461 Sum_probs=41.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECCeEEee
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL-------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGGKHIGG 79 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g~~ig~ 79 (107)
++.|+++||++|+...+.+.+. ++.+..+|++.. +.+....|..++|+++ .+|+.+..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-------~~l~~~~~V~~~Pt~~i~~~g~~~~~ 94 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-------RRLARKLGAHSVPAIVGIINGQVTFY 94 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-------HHHHHHcCCccCCEEEEEECCEEEEE
Confidence 5568999999999887776442 455566666654 3567778999999884 58876543
No 95
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.85 E-value=3.6e-08 Score=55.11 Aligned_cols=64 Identities=16% Similarity=0.373 Sum_probs=53.2
Q ss_pred EEEEEeC-------CChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 15 VVVFSKT-------LCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 15 v~~y~~~-------~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
+++|+.+ .||+|.+++.+|+..|++|+.++++.. ...+...+|++..+|+.+.++..|.+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 5778776 579999999999999999998887642 3456788999999999999998888776
Q ss_pred Hc
Q 033962 88 RE 89 (107)
Q Consensus 88 ~~ 89 (107)
++
T Consensus 71 ~~ 72 (75)
T cd03080 71 EE 72 (75)
T ss_pred HH
Confidence 53
No 96
>PRK10996 thioredoxin 2; Provisional
Probab=98.84 E-value=2.2e-08 Score=62.47 Aligned_cols=84 Identities=15% Similarity=0.331 Sum_probs=52.3
Q ss_pred HHHhhccCCc--EEEEEeCCChhHHHHHHHHHhc----C--CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECC
Q 033962 5 KAQETVSSNS--VVVFSKTLCPFCVSVKELFQQL----G--VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGG 74 (107)
Q Consensus 5 ~~~~~~~~~~--v~~y~~~~Cp~C~~a~~~l~~~----~--i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g 74 (107)
.+++++...+ ++.|+++||++|+.....|.+. + +.+..+|++.. +.+.+.++..++|+++ .+|
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-------~~l~~~~~V~~~Ptlii~~~G 116 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-------RELSARFRIRSIPTIMIFKNG 116 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-------HHHHHhcCCCccCEEEEEECC
Confidence 3444444333 5568999999999888777653 2 33444555443 3667788999999884 488
Q ss_pred eEEeecHHHHHHHHcCCcHHHHHh
Q 033962 75 KHIGGCDSTTALHREGKLVPLLTE 98 (107)
Q Consensus 75 ~~ig~~~~~~~~~~~~~l~~~L~~ 98 (107)
+.+..+.. ......|.++|++
T Consensus 117 ~~v~~~~G---~~~~e~l~~~l~~ 137 (139)
T PRK10996 117 QVVDMLNG---AVPKAPFDSWLNE 137 (139)
T ss_pred EEEEEEcC---CCCHHHHHHHHHH
Confidence 86644321 2234456666654
No 97
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.84 E-value=3.7e-08 Score=58.34 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=43.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECCeEEeec
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGGKHIGGC 80 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g~~ig~~ 80 (107)
++.|+.+||+.|+...+.|.+. ++.+..+|++..+ ....+.+.++..++|+++ -+|+.+...
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~----~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~ 87 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND----STMELCRREKIIEVPHFLFYKDGEKIHEE 87 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh----HHHHHHHHcCCCcCCEEEEEeCCeEEEEE
Confidence 4559999999999998888763 4455556665542 123677888999999874 488766443
No 98
>PTZ00051 thioredoxin; Provisional
Probab=98.83 E-value=6.7e-08 Score=56.26 Aligned_cols=70 Identities=20% Similarity=0.377 Sum_probs=49.0
Q ss_pred hHHHhhccCCc--EEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECC
Q 033962 4 PKAQETVSSNS--VVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGG 74 (107)
Q Consensus 4 ~~~~~~~~~~~--v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g 74 (107)
+.++++++..+ ++.|+.+||+.|+.....|... ++.+..+|++.. ..+.+.++..++|+++ .+|
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-------~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL-------SEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch-------HHHHHHCCCceeeEEEEEeCC
Confidence 45566665544 4568999999999998888763 455556665543 3567788999999884 478
Q ss_pred eEEeec
Q 033962 75 KHIGGC 80 (107)
Q Consensus 75 ~~ig~~ 80 (107)
+.++.+
T Consensus 82 ~~~~~~ 87 (98)
T PTZ00051 82 SVVDTL 87 (98)
T ss_pred eEEEEE
Confidence 766544
No 99
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.2e-08 Score=55.58 Aligned_cols=64 Identities=22% Similarity=0.458 Sum_probs=47.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCc----------hHHHHHHHhhcCCCceeEEEE-CCeEEee
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDG----------SDIQSALAEWTGQKTVPNVFI-GGKHIGG 79 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~----------~~~~~~l~~~~~~~~vP~i~i-~g~~ig~ 79 (107)
-++|++..||.|..+...|++++++|++++|..+-.. ...+++. +..|+-++|.+.+ +|+.+-|
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~v-k~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEV-KSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhh-hhcCcccceEEEeCCCcEEEe
Confidence 3889999999999999999999999999999875211 1111121 2357889999976 5666654
No 100
>PRK09381 trxA thioredoxin; Provisional
Probab=98.83 E-value=1.7e-08 Score=60.09 Aligned_cols=74 Identities=18% Similarity=0.354 Sum_probs=48.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECCeEEeecHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGGKHIGGCDSTTAL 86 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g~~ig~~~~~~~~ 86 (107)
++.|+.+|||+|+.+.+.+++. ++.+..+|++..+ .+.+.++..++|+++ -+|+.++.+...
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~-------~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~--- 94 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-------GTAPKYGIRGIPTLLLFKNGEVAATKVGA--- 94 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh-------hHHHhCCCCcCCEEEEEeCCeEEEEecCC---
Confidence 5568999999999998888653 2445666666542 456678999999884 488877544321
Q ss_pred HHcCCcHHHHHh
Q 033962 87 HREGKLVPLLTE 98 (107)
Q Consensus 87 ~~~~~l~~~L~~ 98 (107)
....+|..+|++
T Consensus 95 ~~~~~l~~~i~~ 106 (109)
T PRK09381 95 LSKGQLKEFLDA 106 (109)
T ss_pred CCHHHHHHHHHH
Confidence 112345555554
No 101
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.82 E-value=1.6e-08 Score=74.93 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=54.2
Q ss_pred hHHHhhccCCcEEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEe
Q 033962 4 PKAQETVSSNSVVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIG 78 (107)
Q Consensus 4 ~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig 78 (107)
+.++++-++..|++|.+++||||..+...+.+. +|..+.+|.... +++...+++.+||++|+||+.+.
T Consensus 109 ~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~-------~~~~~~~~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 109 EQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF-------QDEVEARNIMAVPTVFLNGEEFG 181 (517)
T ss_pred HHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC-------HhHHHhcCCcccCEEEECCcEEE
Confidence 456666667789999999999999999999775 344566655555 46788899999999999997654
Q ss_pred e
Q 033962 79 G 79 (107)
Q Consensus 79 ~ 79 (107)
.
T Consensus 182 ~ 182 (517)
T PRK15317 182 Q 182 (517)
T ss_pred e
Confidence 3
No 102
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.81 E-value=2e-08 Score=56.88 Aligned_cols=60 Identities=25% Similarity=0.512 Sum_probs=46.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHh-----cCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE--CCeEEeec
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQ-----LGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI--GGKHIGGC 80 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i--~g~~ig~~ 80 (107)
-+++|+.+||++|+.+...+.+ .++.+..+|++.. ..+...++..++|++++ +|+.++.+
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN-------PELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC-------hhHHHhcCcccccEEEEEECCEEEEEE
Confidence 3677899999999999999987 5677788888765 25566778999999855 77755433
No 103
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.81 E-value=2.6e-08 Score=56.82 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=52.4
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEEC-CeEEeecHHHHHHHHc
Q 033962 21 TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIG-GKHIGGCDSTTALHRE 89 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~-g~~ig~~~~~~~~~~~ 89 (107)
++||+|++++.+|...+++|+.+.++.... .....++ ...+...+|++..+ |..+.++..|.+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~-~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~ 81 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDI-PPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEE 81 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCc-ccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHH
Confidence 789999999999999999999988875422 2222334 45667899999988 8999999888887653
No 104
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.79 E-value=6.4e-08 Score=54.73 Aligned_cols=73 Identities=10% Similarity=0.192 Sum_probs=57.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEEC---CeEEeecHHHHHHHHc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIG---GKHIGGCDSTTALHRE 89 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~---g~~ig~~~~~~~~~~~ 89 (107)
+++|+.+. |+|++++.+|...+++|+.+.++.... ....+++...+....+|++..+ |..+.++..|.+++.+
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~ 77 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKG-EQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAE 77 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCC-cccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHH
Confidence 68999886 999999999999999999888875321 1223456677788999999887 7888888888776643
No 105
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=98.79 E-value=3.3e-08 Score=65.36 Aligned_cols=69 Identities=19% Similarity=0.339 Sum_probs=56.1
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE-ECCeEEeecHHHHHHHHc
Q 033962 16 VVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF-IGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 16 ~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~-i~g~~ig~~~~~~~~~~~ 89 (107)
++|+.+.||+|++++.+|..+|++|+.+++...... ...+.++...+|++. .||..+.++..|.+++.+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-----~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-----TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch-----hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 478899999999999999999999999888654321 124556678999997 788999999999887765
No 106
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.79 E-value=5.5e-08 Score=58.48 Aligned_cols=64 Identities=23% Similarity=0.380 Sum_probs=45.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEeecHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIGGCDSTTAL 86 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig~~~~~~~~ 86 (107)
++.|+.+||+.|+.+...|++. ++.|-.+|++.. .+.+.++..++|++ |.+|+.++.......+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--------~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--------FLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--------HHHHhcCCCcCCEEEEEECCEEEEEEecHHHh
Confidence 4568999999999999888764 344444444421 66778899999988 5599888766544433
No 107
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.78 E-value=2.8e-08 Score=74.22 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=53.7
Q ss_pred hHHHhhccCCcEEEEEeCCChhHHHHHHHHHh----c-CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 4 PKAQETVSSNSVVVFSKTLCPFCVSVKELFQQ----L-GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 4 ~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~----~-~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
+.++++-++..|.+|..++||+|..+...+.+ + +|..+.+|+... +++.+.+++.+||.+++||+.+
T Consensus 469 ~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~-------~~~~~~~~v~~vP~~~i~~~~~ 540 (555)
T TIGR03143 469 EKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF-------PDLKDEYGIMSVPAIVVDDQQV 540 (555)
T ss_pred HHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc-------HHHHHhCCceecCEEEECCEEE
Confidence 44555555667999999999999988887754 3 688899998877 4778889999999999999743
No 108
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.78 E-value=2.2e-08 Score=62.71 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=41.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE-E--CCeEEe
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF-I--GGKHIG 78 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~-i--~g~~ig 78 (107)
|+.|+.+||++|+.....|.+. .+.+..++++... ...+...++..++|+++ + +|+.++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-----~~~~~~~~~V~~iPt~v~~~~~G~~v~ 91 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-----WLPEIDRYRVDGIPHFVFLDREGNEEG 91 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-----cHHHHHHcCCCCCCEEEEECCCCCEEE
Confidence 4568999999999888888653 2456666776532 12556778999999884 4 476554
No 109
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.76 E-value=3.5e-08 Score=73.09 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=52.8
Q ss_pred hHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcC-----CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEe
Q 033962 4 PKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLG-----VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIG 78 (107)
Q Consensus 4 ~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~-----i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig 78 (107)
+.++++-++..|++|.+++||||..++..+.+.. |..+.+|.... +++...+++.+||.+|+||+.+.
T Consensus 110 ~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~-------~~~~~~~~v~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 110 DRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALF-------QDEVEALGIQGVPAVFLNGEEFH 182 (515)
T ss_pred HHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhC-------HHHHHhcCCcccCEEEECCcEEE
Confidence 4455555677799999999999999999998764 34444554444 46788899999999999998665
Q ss_pred e
Q 033962 79 G 79 (107)
Q Consensus 79 ~ 79 (107)
.
T Consensus 183 ~ 183 (515)
T TIGR03140 183 N 183 (515)
T ss_pred e
Confidence 4
No 110
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.73 E-value=4.1e-08 Score=63.53 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=50.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC---ceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEeecHHHHH----
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGV---TFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIGGCDSTTA---- 85 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i---~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig~~~~~~~---- 85 (107)
|+.|+.+||+.|+.+.+.|+.+.- .+.++.|+.+.. .+...++..++|++ |.+|+.++.+....+
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~------~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~ 160 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT------GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGE 160 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch------hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCC
Confidence 445889999999988888866522 223444444321 56778899999988 559987754432222
Q ss_pred HHHcCCcHHHHHhcC
Q 033962 86 LHREGKLVPLLTEAG 100 (107)
Q Consensus 86 ~~~~~~l~~~L~~~~ 100 (107)
-.+...|+.+|.+.|
T Consensus 161 ~f~~~~le~~L~~~g 175 (175)
T cd02987 161 DFDAEDLESFLVEYG 175 (175)
T ss_pred CCCHHHHHHHHHhcC
Confidence 333445666666544
No 111
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.73 E-value=6.5e-08 Score=58.21 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=46.7
Q ss_pred CcEEEEEeCC--ChhHHHHHHHHHhcCC------ceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEeecH
Q 033962 13 NSVVVFSKTL--CPFCVSVKELFQQLGV------TFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIGGCD 81 (107)
Q Consensus 13 ~~v~~y~~~~--Cp~C~~a~~~l~~~~i------~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig~~~ 81 (107)
..|+.|+.+| ||.|+.+...|++..- .+-.+|++.. ++++..++..++|++ |-+|+.++...
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-------~~la~~f~V~sIPTli~fkdGk~v~~~~ 100 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-------QALAARFGVLRTPALLFFRDGRYVGVLA 100 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-------HHHHHHcCCCcCCEEEEEECCEEEEEEe
Confidence 3466788886 9999999999977532 3445666655 378889999999988 55999887654
No 112
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.73 E-value=5.9e-08 Score=56.31 Aligned_cols=58 Identities=22% Similarity=0.535 Sum_probs=41.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE--CCeEEee
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI--GGKHIGG 79 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i--~g~~ig~ 79 (107)
++.|+.+||++|+.+...|.+. .+.+-.+|.+.. +.+.+.++..++|++++ +|+.+..
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~v~~~P~~~~~~~g~~~~~ 83 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN-------PDIAAKYGIRSIPTLLLFKNGKEVDR 83 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC-------HHHHHHcCCCcCCEEEEEeCCcEeee
Confidence 5568899999999888777653 255666666654 25667789999998854 7765543
No 113
>PRK10387 glutaredoxin 2; Provisional
Probab=98.73 E-value=7.6e-08 Score=63.20 Aligned_cols=71 Identities=21% Similarity=0.357 Sum_probs=56.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE-EECCeEEeecHHHHHHHHcC
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV-FIGGKHIGGCDSTTALHREG 90 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i-~i~g~~ig~~~~~~~~~~~~ 90 (107)
+++|+.+.||+|.+++-+|...|++|+.++++.... ... ...++..+||++ ..+|..+.++..|..++++.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~----~~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~ 72 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDE----ATP-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDEL 72 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCch----hhH-HHhcCCcccceEEecCCeEecCHHHHHHHHHHh
Confidence 478999999999999999999999999998865421 112 235567899999 46889999999998887653
No 114
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.73 E-value=1.7e-07 Score=55.29 Aligned_cols=66 Identities=24% Similarity=0.409 Sum_probs=43.3
Q ss_pred HHHhhccCCc--EEEEEeCCChhHHHHHHHHHhc----C---CceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EEC
Q 033962 5 KAQETVSSNS--VVVFSKTLCPFCVSVKELFQQL----G---VTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIG 73 (107)
Q Consensus 5 ~~~~~~~~~~--v~~y~~~~Cp~C~~a~~~l~~~----~---i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~ 73 (107)
.+.+++...+ ++.|+++||++|+.....|... + +.+..+|++ . ..+.+.++..++|++ |-+
T Consensus 9 ~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-------~~~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 9 EWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-------IDTLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred HHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-------HHHHHHcCCCcCcEEEEEEC
Confidence 3444444333 4568999999999888888653 2 234455555 2 245678899999977 447
Q ss_pred CeEEe
Q 033962 74 GKHIG 78 (107)
Q Consensus 74 g~~ig 78 (107)
|+.++
T Consensus 81 g~~~~ 85 (102)
T cd02948 81 GELVA 85 (102)
T ss_pred CEEEE
Confidence 87543
No 115
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=98.73 E-value=9.9e-08 Score=53.29 Aligned_cols=71 Identities=7% Similarity=0.061 Sum_probs=57.1
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-CCeEEeecHHHHHHHH
Q 033962 16 VVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-GGKHIGGCDSTTALHR 88 (107)
Q Consensus 16 ~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-~g~~ig~~~~~~~~~~ 88 (107)
++|+.+.||+|.+++-+|...|++|+.++++.... ...+++...+....+|++.. +|..+.+...|.+++.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~--~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~ 73 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE--NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVA 73 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc--cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHh
Confidence 58889999999999999999999999998886531 12245677788899999997 4888888877776653
No 116
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.70 E-value=3.1e-08 Score=59.06 Aligned_cols=64 Identities=23% Similarity=0.439 Sum_probs=38.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc---------CCceEEEEcCCCCC-------------chHHHHHHHhhcCCCceeEEE
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL---------GVTFKAIELDKESD-------------GSDIQSALAEWTGQKTVPNVF 71 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~---------~i~~~~~~i~~~~~-------------~~~~~~~l~~~~~~~~vP~i~ 71 (107)
.+++|+++|||+|+++...+... ++.+..++++...+ ......++.+.+|..++|+++
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~ 87 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIV 87 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEE
Confidence 47789999999999887777631 23334445543310 012345788889999999995
Q ss_pred E-C--CeEE
Q 033962 72 I-G--GKHI 77 (107)
Q Consensus 72 i-~--g~~i 77 (107)
+ + |+.+
T Consensus 88 ~~d~~G~~v 96 (112)
T PF13098_consen 88 FLDKDGKIV 96 (112)
T ss_dssp ECTTTSCEE
T ss_pred EEcCCCCEE
Confidence 5 4 6633
No 117
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.70 E-value=6.1e-08 Score=59.05 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=40.6
Q ss_pred HHHhhccCC--c-EEEEEeCCChhHHHHHHHHH-------hc--CCceEEEEcCCCCCch------HHHHHHHhhcCCCc
Q 033962 5 KAQETVSSN--S-VVVFSKTLCPFCVSVKELFQ-------QL--GVTFKAIELDKESDGS------DIQSALAEWTGQKT 66 (107)
Q Consensus 5 ~~~~~~~~~--~-v~~y~~~~Cp~C~~a~~~l~-------~~--~i~~~~~~i~~~~~~~------~~~~~l~~~~~~~~ 66 (107)
.+.++.+.. + ++.|+++|||+|++....+. .+ ++.+..+|++.+.... .....+...++..+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 344444444 3 45689999999998876542 11 3444555655431100 01246778889999
Q ss_pred eeEEEE
Q 033962 67 VPNVFI 72 (107)
Q Consensus 67 vP~i~i 72 (107)
+|++++
T Consensus 85 ~Pt~~~ 90 (125)
T cd02951 85 TPTVIF 90 (125)
T ss_pred ccEEEE
Confidence 998743
No 118
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=98.68 E-value=2.3e-07 Score=51.45 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=57.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
+++|+.+.+|+|++++..|.+.|++|+.++++.... ....+++.+.+....+|.+..+|..+.+...|..++
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~-~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL 72 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFG-GLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYL 72 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccc-cccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHh
Confidence 368999999999999999999999999988865321 112245666778899999999999888887776654
No 119
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.68 E-value=5.8e-08 Score=57.41 Aligned_cols=59 Identities=17% Similarity=0.363 Sum_probs=38.3
Q ss_pred HHhhccCCc-EEEEEeCCChhHHHHHHHHHhc-------C--CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE
Q 033962 6 AQETVSSNS-VVVFSKTLCPFCVSVKELFQQL-------G--VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF 71 (107)
Q Consensus 6 ~~~~~~~~~-v~~y~~~~Cp~C~~a~~~l~~~-------~--i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~ 71 (107)
+.+..+... ++.|+++|||+|+...+.|.+. + +.+..+|++.. ..+.+.++..++|+++
T Consensus 9 ~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 9 FKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-------SSIASEFGVRGYPTIK 77 (104)
T ss_pred hhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-------HhHHhhcCCccccEEE
Confidence 344434333 4558999999999887777542 2 23344555443 3567788999999883
No 120
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.68 E-value=4.1e-08 Score=59.61 Aligned_cols=58 Identities=22% Similarity=0.473 Sum_probs=38.7
Q ss_pred EEEEEeCCChhHHHHHHHHHh------cCCceEEEEcCCCCCchHHHHHHHhhcCCC--ceeEE-EE--CCeEEe
Q 033962 15 VVVFSKTLCPFCVSVKELFQQ------LGVTFKAIELDKESDGSDIQSALAEWTGQK--TVPNV-FI--GGKHIG 78 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~------~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~--~vP~i-~i--~g~~ig 78 (107)
++.|+++||++|+...+.+.+ .+..|..++++.++.. . .+.++.. ++|++ |+ +|+.++
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~--~----~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP--K----DEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc--h----hhhcccCCCccceEEEECCCCCCch
Confidence 445899999999999888866 3446788888876421 1 2234443 49988 44 676655
No 121
>PRK15113 glutathione S-transferase; Provisional
Probab=98.68 E-value=2e-07 Score=61.67 Aligned_cols=76 Identities=13% Similarity=0.309 Sum_probs=61.3
Q ss_pred CCcEEEEEeC--CChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHH
Q 033962 12 SNSVVVFSKT--LCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHR 88 (107)
Q Consensus 12 ~~~v~~y~~~--~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~ 88 (107)
...+++|+.+ .||+|++++.+|.++|++|+.+.++.... ....+++.+.+..+.||++..||..+.++..|..++.
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~-~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAG-EHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCc-cccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 3457899975 69999999999999999999988876432 1223466778888999999999999988888877665
No 122
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.67 E-value=7.4e-08 Score=58.80 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=48.6
Q ss_pred EEEEEeCCChh--HH--HH--------HHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEeec
Q 033962 15 VVVFSKTLCPF--CV--SV--------KELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIGGC 80 (107)
Q Consensus 15 v~~y~~~~Cp~--C~--~a--------~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig~~ 80 (107)
|+.|+.+||+. |+ .. ...|+..++.+-.+|++.. ..+++.+|..++|++ |.||+.+. +
T Consensus 31 vv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~-------~~La~~~~I~~iPTl~lfk~G~~v~-~ 102 (120)
T cd03065 31 LLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD-------AKVAKKLGLDEEDSIYVFKDDEVIE-Y 102 (120)
T ss_pred EEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC-------HHHHHHcCCccccEEEEEECCEEEE-e
Confidence 34477778865 98 33 3344455778888888876 478899999999988 66998664 4
Q ss_pred HHHHHHHHcCCcHHHHHh
Q 033962 81 DSTTALHREGKLVPLLTE 98 (107)
Q Consensus 81 ~~~~~~~~~~~l~~~L~~ 98 (107)
. ...+...|.++|++
T Consensus 103 ~---G~~~~~~l~~~l~~ 117 (120)
T cd03065 103 D---GEFAADTLVEFLLD 117 (120)
T ss_pred e---CCCCHHHHHHHHHH
Confidence 3 22234456666654
No 123
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.66 E-value=1.9e-07 Score=55.08 Aligned_cols=51 Identities=27% Similarity=0.491 Sum_probs=36.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF 71 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~ 71 (107)
++.|+++||++|+.....|++. ++.+..+|.+. . ...+.+.++..++|+++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~-~-----~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESS-I-----KPSLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCC-C-----CHHHHHhcCCeecCEEE
Confidence 5569999999999999888764 33444444431 1 13667888999999884
No 124
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.64 E-value=2e-07 Score=54.09 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=41.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEee
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIGG 79 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig~ 79 (107)
++.|+.+||+.|+++...|++. ...+..+.++.+.. .++...++..++|++ |.+|+.++.
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g~~~~~ 83 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-----PEISEKFEITAVPTFVFFRNGTIVDR 83 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-----HHHHHhcCCccccEEEEEECCEEEEE
Confidence 4568999999999998888763 22344445544322 366778899999987 447876543
No 125
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.64 E-value=1.3e-07 Score=55.53 Aligned_cols=65 Identities=18% Similarity=0.403 Sum_probs=44.0
Q ss_pred HHhhccCCc--EEEEEeCCChhHHHHHHHHHhcC------CceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCe
Q 033962 6 AQETVSSNS--VVVFSKTLCPFCVSVKELFQQLG------VTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGK 75 (107)
Q Consensus 6 ~~~~~~~~~--v~~y~~~~Cp~C~~a~~~l~~~~------i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~ 75 (107)
+++.+...+ ++.|+++||++|+.+...+.+.. +.+-.+|++.. +.+.+.++..++|++ |-+|+
T Consensus 11 f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-------~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 11 FDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-------RMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred HHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-------HHHHHHcCCCccCEEEEEcCCC
Confidence 444443333 45689999999999988886642 34455666654 356778899999988 44776
Q ss_pred EE
Q 033962 76 HI 77 (107)
Q Consensus 76 ~i 77 (107)
.+
T Consensus 84 ~~ 85 (101)
T cd03003 84 NP 85 (101)
T ss_pred Cc
Confidence 44
No 126
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.63 E-value=3.4e-07 Score=58.04 Aligned_cols=60 Identities=30% Similarity=0.532 Sum_probs=42.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-------CCceEEEEcCCCCCchHHHHHHHhhcCCCc------eeEE--EECCeEEee
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL-------GVTFKAIELDKESDGSDIQSALAEWTGQKT------VPNV--FIGGKHIGG 79 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~------vP~i--~i~g~~ig~ 79 (107)
++.|+++|||.|+.+.+.+.+. ++.+-.+|++..+ .+.+.++..+ +|++ |.+|+.+..
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~-------~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP-------NVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH-------HHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 6669999999999988887653 2455667766652 4566667665 9987 568987754
Q ss_pred cH
Q 033962 80 CD 81 (107)
Q Consensus 80 ~~ 81 (107)
..
T Consensus 124 ~~ 125 (152)
T cd02962 124 RP 125 (152)
T ss_pred Ee
Confidence 43
No 127
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.63 E-value=3.3e-07 Score=54.46 Aligned_cols=64 Identities=23% Similarity=0.451 Sum_probs=44.1
Q ss_pred HHHhhccCCc--EEEEEeCCChhHHHHHHHHHhc------------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE
Q 033962 5 KAQETVSSNS--VVVFSKTLCPFCVSVKELFQQL------------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV 70 (107)
Q Consensus 5 ~~~~~~~~~~--v~~y~~~~Cp~C~~a~~~l~~~------------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i 70 (107)
.+.+.+...+ ++.|+++||++|+...+.+++. .+.+..+|.+.. ..+.+.+|..++|++
T Consensus 10 ~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-------~~l~~~~~v~~~Ptl 82 (108)
T cd02996 10 NIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-------SDIADRYRINKYPTL 82 (108)
T ss_pred hHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-------HHHHHhCCCCcCCEE
Confidence 3444454443 4568999999999998888532 244555666654 367888899999988
Q ss_pred --EECCe
Q 033962 71 --FIGGK 75 (107)
Q Consensus 71 --~i~g~ 75 (107)
|-+|+
T Consensus 83 ~~~~~g~ 89 (108)
T cd02996 83 KLFRNGM 89 (108)
T ss_pred EEEeCCc
Confidence 44776
No 128
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.2e-07 Score=60.93 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=61.3
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhc-CCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWT-GQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~-~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
..|.+|+.-.|||.++++..|+..||+|++++++-.... +.+.+.+ -...||++..||+.|..+-.+.++.++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks----~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe 81 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKS----EWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDE 81 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCC----HHHHHhccccccCCEEEECCceehhhHHHHHHHHh
Confidence 569999999999999999999999999999999876432 3555565 468999999999999988888877653
No 129
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=98.62 E-value=3.5e-07 Score=51.10 Aligned_cols=72 Identities=10% Similarity=0.226 Sum_probs=55.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEEC-CeEEeecHHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIG-GKHIGGCDSTTALHR 88 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~-g~~ig~~~~~~~~~~ 88 (107)
+++|+.+.| .|++++.+|...|++|+.++++.... ....+++.+.++...+|++..+ |..+.++..|.+++.
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~ 73 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTK-TQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLA 73 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccC-ccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHH
Confidence 368888866 48899999999999999988876432 1123466677888999999887 788888888877664
No 130
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.60 E-value=5.9e-07 Score=60.54 Aligned_cols=70 Identities=20% Similarity=0.471 Sum_probs=47.7
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc---CCceEEEEcCC---CCC----------------------------------ch
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQL---GVTFKAIELDK---ESD----------------------------------GS 52 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~---~i~~~~~~i~~---~~~----------------------------------~~ 52 (107)
..|++|+.+.||||+++...+.++ ++.+.++.+.. ++. .-
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v 188 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDI 188 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchH
Confidence 348899999999999999999875 35544433321 110 01
Q ss_pred HHHHHHHhhcCCCceeEEEE-CCeEEeecHH
Q 033962 53 DIQSALAEWTGQKTVPNVFI-GGKHIGGCDS 82 (107)
Q Consensus 53 ~~~~~l~~~~~~~~vP~i~i-~g~~ig~~~~ 82 (107)
+...++.+..|..++|++++ ||+.+.|+..
T Consensus 189 ~~~~~la~~lgi~gTPtiv~~~G~~~~G~~~ 219 (232)
T PRK10877 189 ADHYALGVQFGVQGTPAIVLSNGTLVPGYQG 219 (232)
T ss_pred HHhHHHHHHcCCccccEEEEcCCeEeeCCCC
Confidence 22334456678999999987 9999988743
No 131
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.60 E-value=4.1e-07 Score=54.89 Aligned_cols=59 Identities=15% Similarity=0.488 Sum_probs=44.8
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcC------CceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEE
Q 033962 12 SNSVVV-FSKTLCPFCVSVKELFQQLG------VTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHI 77 (107)
Q Consensus 12 ~~~v~~-y~~~~Cp~C~~a~~~l~~~~------i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~i 77 (107)
...|++ |+++|||.|+..-++|.++. +.+-.+|+++. +++.+.++....|++ |-||+++
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev-------~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV-------PVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc-------HHHHHhcCceeCcEEEEEECCcEE
Confidence 333444 99999999999999998764 34566777765 367888899889977 5588876
No 132
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.60 E-value=4.6e-07 Score=52.90 Aligned_cols=66 Identities=15% Similarity=0.346 Sum_probs=41.9
Q ss_pred HHhhccCCc-EEEEEeCCChhHHHHHHHHHhc---------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--EC
Q 033962 6 AQETVSSNS-VVVFSKTLCPFCVSVKELFQQL---------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IG 73 (107)
Q Consensus 6 ~~~~~~~~~-v~~y~~~~Cp~C~~a~~~l~~~---------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~ 73 (107)
+.+.+...+ ++.|+++||++|+...+.+.+. .+.+..+|.+.. ..+.+.++..++|+++ .+
T Consensus 10 f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~v~~~Pt~~~~~~ 82 (102)
T cd03005 10 FDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-------RELCSEFQVRGYPTLLLFKD 82 (102)
T ss_pred HHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-------hhhHhhcCCCcCCEEEEEeC
Confidence 444444334 4568999999999887777543 233444554443 2556778999999874 46
Q ss_pred CeEEe
Q 033962 74 GKHIG 78 (107)
Q Consensus 74 g~~ig 78 (107)
|+.+.
T Consensus 83 g~~~~ 87 (102)
T cd03005 83 GEKVD 87 (102)
T ss_pred CCeee
Confidence 76443
No 133
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.59 E-value=3.3e-07 Score=55.35 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=39.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC------CceEEEEcCCCCCchHHHHHHH-hhcCCCceeEE--EECCeE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLG------VTFKAIELDKESDGSDIQSALA-EWTGQKTVPNV--FIGGKH 76 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~------i~~~~~~i~~~~~~~~~~~~l~-~~~~~~~vP~i--~i~g~~ 76 (107)
++.|+.+||++|+.+...+++.. +.+-.+|++... .+. +.++..++|++ |.+|+.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~-------~l~~~~~~I~~~PTl~lf~~g~~ 96 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ-------GKCRKQKHFFYFPVIHLYYRSRG 96 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh-------HHHHHhcCCcccCEEEEEECCcc
Confidence 45699999999999999887652 345566666542 344 57889999988 557763
No 134
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.5e-07 Score=56.25 Aligned_cols=56 Identities=25% Similarity=0.483 Sum_probs=42.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCc-----eEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECCeEEe
Q 033962 16 VVFSKTLCPFCVSVKELFQQLGVT-----FKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGGKHIG 78 (107)
Q Consensus 16 ~~y~~~~Cp~C~~a~~~l~~~~i~-----~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g~~ig 78 (107)
+-|+++||+.|+...+.+.++..+ |-.+|+|. -+.+.+..+...+|+++ .+|+.++
T Consensus 26 vdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-------~~~~~~~~~V~~~PTf~f~k~g~~~~ 88 (106)
T KOG0907|consen 26 VDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-------LEEVAKEFNVKAMPTFVFYKGGEEVD 88 (106)
T ss_pred EEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-------CHhHHHhcCceEeeEEEEEECCEEEE
Confidence 448899999999999999887544 45566665 14778888999999983 4776443
No 135
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.57 E-value=3.6e-07 Score=53.80 Aligned_cols=53 Identities=17% Similarity=0.319 Sum_probs=38.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECC
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGG 74 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g 74 (107)
++.|+++||++|+.+.+.+.+. .+.+..+|.+.. ..+.+.++..++|+++ .+|
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-------ESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-------HHHHHHcCCCcccEEEEEcCC
Confidence 5568999999999988888653 244555666554 3667788999999884 355
No 136
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.56 E-value=3.6e-07 Score=53.16 Aligned_cols=51 Identities=20% Similarity=0.434 Sum_probs=36.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhc--------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL--------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
++.|+.+||+.|+.....+.+. ++.+..+|.+.. ..+.+.++..++|++++
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-------KDLASRFGVSGFPTIKF 75 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-------HHHHHhCCCCcCCEEEE
Confidence 6779999999999877777542 133444555443 36677889999998843
No 137
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=98.56 E-value=1e-06 Score=59.59 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=56.0
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 21 TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
..||+|++++..|..+|++|+.+.++..... +++.+.+..+.+|++..+|..+.++..|.+++++
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~----~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKP----EDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEE 81 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCC----HHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHH
Confidence 6899999999999999999999999876322 4667788889999999999999999998888764
No 138
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.55 E-value=3.4e-07 Score=60.10 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=48.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC-----CceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEeecHHHHH--
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLG-----VTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIGGCDSTTA-- 85 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~-----i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig~~~~~~~-- 85 (107)
|+.|+.+||+.|+.+...|..+. +.|..+|++. ....++..++|++ |.||+.++.+.....
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~----------~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~g 175 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ----------CIPNYPDKNLPTILVYRNGDIVKQFIGLLEFG 175 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH----------hHhhCCCCCCCEEEEEECCEEEEEEeCchhhC
Confidence 44588999999999999887753 3444444432 1456789999988 458886644432222
Q ss_pred --HHHcCCcHHHHHhcC
Q 033962 86 --LHREGKLVPLLTEAG 100 (107)
Q Consensus 86 --~~~~~~l~~~L~~~~ 100 (107)
-++...|+.+|.+.|
T Consensus 176 g~~~~~~~lE~~L~~~g 192 (192)
T cd02988 176 GMNTTMEDLEWLLVQVG 192 (192)
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 223345666666544
No 139
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.54 E-value=3.1e-07 Score=47.86 Aligned_cols=56 Identities=27% Similarity=0.633 Sum_probs=42.0
Q ss_pred EEEEEeCCChhHHHHHHHHH-----hcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECC
Q 033962 15 VVVFSKTLCPFCVSVKELFQ-----QLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGG 74 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~-----~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g 74 (107)
+++|+.++|++|+++...+. ..++.+..++++..... ... ....+..++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPAL---EKE-LKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHH---hhH-HHhCCCccccEEEEEe
Confidence 46789999999999999999 45778888888877422 111 2456788999997644
No 140
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.51 E-value=4.2e-07 Score=55.42 Aligned_cols=58 Identities=16% Similarity=0.312 Sum_probs=39.0
Q ss_pred EEEEEe-------CCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCC-ceeEEEE
Q 033962 15 VVVFSK-------TLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQK-TVPNVFI 72 (107)
Q Consensus 15 v~~y~~-------~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~-~vP~i~i 72 (107)
++.|++ +|||+|+.+...|++. ++.+..+|++..+.-.+....++..++.. ++|++++
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 556888 8999999888877553 35667777776431111123566777887 9999843
No 141
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=98.48 E-value=1.3e-06 Score=48.47 Aligned_cols=71 Identities=10% Similarity=0.148 Sum_probs=55.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHH
Q 033962 16 VVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHR 88 (107)
Q Consensus 16 ~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~ 88 (107)
++|+.+. +.|.+++.+|...+++|+.+.++.... ....+++.+.+....+|++..+|..+.++..|..++.
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPG-EQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCC-ccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5777775 779999999999999999888875311 1112455667788999999999999998888887764
No 142
>PLN02473 glutathione S-transferase
Probab=98.48 E-value=1.1e-06 Score=57.91 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=59.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHR 88 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~ 88 (107)
.+++|+.+.||+|++++-+|.++|++|+.+.++.... ....+++...+..+.+|++..||..+.++..|..++.
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~-~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~ 75 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKL-EQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYA 75 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCccc-ccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHH
Confidence 4689999999999999999999999999887765421 1112344556778999999999999999988888765
No 143
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.48 E-value=5.7e-07 Score=53.20 Aligned_cols=54 Identities=20% Similarity=0.412 Sum_probs=37.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
.++.|+++||++|+.....+.+. .+.+..+|++.+.. ..+...++..++|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~-----~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN-----KPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc-----HHHHHHcCCCcCCEEEE
Confidence 36679999999999887777654 23445556665322 35677889999998854
No 144
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.45 E-value=6.1e-07 Score=60.22 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=40.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----C--CceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEE
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL----G--VTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHI 77 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~----~--i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~i 77 (107)
-++.|+.+||++|+...+.+++. + +.+..+|.+.. ..+.+.++..++|++ |.+|+.+
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-------~~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-------LNLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-------HHHHHHcCCCcCCEEEEEECCEEE
Confidence 35678999999999998888664 2 23334444433 367788899999988 4478755
No 145
>PLN02378 glutathione S-transferase DHAR1
Probab=98.45 E-value=1e-06 Score=58.38 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=53.9
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 21 TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
..||+|++++-+|+..|++|+.+.++..... +++.+.+..+.||++..+|..+.++..|..++.+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~----~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~ 82 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKP----QWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEE 82 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCC----HHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHH
Confidence 4599999999999999999998888765322 2566778889999999999999888888887754
No 146
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.45 E-value=3.6e-06 Score=51.67 Aligned_cols=75 Identities=21% Similarity=0.376 Sum_probs=43.2
Q ss_pred HHHhhccCC-cEEE-EEeCCChhHHHHHH-HHHh------cCCceEEEEcCCCCCchHHH----HHHHhhcCCCceeEEE
Q 033962 5 KAQETVSSN-SVVV-FSKTLCPFCVSVKE-LFQQ------LGVTFKAIELDKESDGSDIQ----SALAEWTGQKTVPNVF 71 (107)
Q Consensus 5 ~~~~~~~~~-~v~~-y~~~~Cp~C~~a~~-~l~~------~~i~~~~~~i~~~~~~~~~~----~~l~~~~~~~~vP~i~ 71 (107)
.++.+.+.. +|.| |+++||++|+++.. .+.. ++-.|..+.+|.+.. ++.. +.+...+|..++|+++
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~-~~~~~~~~~~~~~~~~~~G~Pt~v 85 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER-PDVDKIYMNAAQAMTGQGGWPLNV 85 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC-cHHHHHHHHHHHHhcCCCCCCEEE
Confidence 344444433 4544 78899999998864 3322 233565555554432 2222 2223356889999884
Q ss_pred E---CCeEEeec
Q 033962 72 I---GGKHIGGC 80 (107)
Q Consensus 72 i---~g~~ig~~ 80 (107)
+ +|+.+.+.
T Consensus 86 fl~~~G~~~~~~ 97 (124)
T cd02955 86 FLTPDLKPFFGG 97 (124)
T ss_pred EECCCCCEEeee
Confidence 4 67777444
No 147
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.43 E-value=1.3e-06 Score=51.12 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=38.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----C----CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECCeEEe
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL----G----VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGGKHIG 78 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~----~----i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g~~ig 78 (107)
++.|+.+|||+|+.+...+.+. . +.+..+|.+.+.. ..+...+|..++|+++ -+|+.+.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~~~~~~~~i~~~Pt~~~~~~g~~~~ 89 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-----DALKEEYNVKGFPTFKYFENGKFVE 89 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-----HHHHHhCCCccccEEEEEeCCCeeE
Confidence 5679999999999887666432 1 3344455554212 3567778999999883 4676443
No 148
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.43 E-value=2.9e-06 Score=47.16 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=53.0
Q ss_pred eCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 20 KTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 20 ~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
...||+|++++-+|...|++|+.+.++.... ...+++.+.+....+|++..+|..+.+...+.+++
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~--~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL 72 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTP--DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYL 72 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc--cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHh
Confidence 3679999999999999999999988876431 12346677778899999999999888888776654
No 149
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.40 E-value=1.8e-06 Score=50.44 Aligned_cols=50 Identities=22% Similarity=0.396 Sum_probs=36.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF 71 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~ 71 (107)
++.|+.+||++|+.....+.+. .+.+..+|.+.. ..+.+.++..++|+++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~-------~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH-------QSLAQQYGVRGFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch-------HHHHHHCCCCccCEEE
Confidence 5668899999999988877653 234455555543 3567788999999884
No 150
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.40 E-value=2.2e-07 Score=57.43 Aligned_cols=72 Identities=17% Similarity=0.426 Sum_probs=39.0
Q ss_pred HHHhhccCCcEEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE---CCeE
Q 033962 5 KAQETVSSNSVVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI---GGKH 76 (107)
Q Consensus 5 ~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i---~g~~ 76 (107)
.++...+...+++++.+|||+|+...++|.+. ++++.++..|.+ .+..+.+.. .|...+|++++ +|+.
T Consensus 35 ~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~---~el~~~~lt-~g~~~IP~~I~~d~~~~~ 110 (129)
T PF14595_consen 35 KLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN---KELMDQYLT-NGGRSIPTFIFLDKDGKE 110 (129)
T ss_dssp HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH---HHHTTTTTT--SS--SSEEEEE-TT--E
T ss_pred HHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC---hhHHHHHHh-CCCeecCEEEEEcCCCCE
Confidence 44445556679999999999999888877653 566776666554 222222222 57889998854 3566
Q ss_pred Eeec
Q 033962 77 IGGC 80 (107)
Q Consensus 77 ig~~ 80 (107)
+|.+
T Consensus 111 lg~w 114 (129)
T PF14595_consen 111 LGRW 114 (129)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6655
No 151
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=98.39 E-value=2.3e-06 Score=58.72 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=53.8
Q ss_pred eCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 20 KTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 20 ~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
..+||+|++++.+|+++|++|+.+.++..... +++.+.+..+.+|++..+|..+.++..|.+++++
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~----~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e 135 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKP----EWFLKISPEGKVPVVKLDEKWVADSDVITQALEE 135 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCC----HHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence 34699999999999999999998888765322 3456677789999999999889888888887754
No 152
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.37 E-value=3.3e-06 Score=48.51 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=41.6
Q ss_pred HHHhhccCC--cEEEEEeCCChhHHHHHHHHHh----c--CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 5 KAQETVSSN--SVVVFSKTLCPFCVSVKELFQQ----L--GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 5 ~~~~~~~~~--~v~~y~~~~Cp~C~~a~~~l~~----~--~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
.+.+.+... -+++|+++||++|+.+...+.+ . +-.+....++.+. ...+.+.++..++|++++
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-----NNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-----hHHHHHhCCCCCCCEEEE
Confidence 344444443 4667999999999998888855 2 2334444444432 136778889999998844
No 153
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.37 E-value=3e-06 Score=50.50 Aligned_cols=53 Identities=25% Similarity=0.506 Sum_probs=35.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL-------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF 71 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~ 71 (107)
-++.|+.+|||+|+.+.+.+.+. ++.+-.+|++.+. . ....+.++..++|+++
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~---~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--R---EFAKEELQLKSFPTIL 83 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--h---hhHHhhcCCCcCCEEE
Confidence 35669999999999998888653 2445555655521 1 1223357889999884
No 154
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=98.36 E-value=1.3e-06 Score=57.25 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=57.7
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 16 VVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 16 ~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
++|+...||+|++++.+|.+.|++|+.+.++.........+++.+.+....+|++..+|..+.++..|..++.+
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~ 74 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEE 74 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHH
Confidence 37888899999999999999999999888874211011124566777889999999999999988888776654
No 155
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.4e-06 Score=56.28 Aligned_cols=75 Identities=9% Similarity=0.200 Sum_probs=61.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCe-EEeecHHHHHHHHcCC
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGK-HIGGCDSTTALHREGK 91 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~-~ig~~~~~~~~~~~~~ 91 (107)
+++|+.+.+|+|.+++-.+.++|++|+.+.++... ....+++...+..+.||++..+|- .+.++..|..++++..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~ 76 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERY 76 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhC
Confidence 36888888899999999999999999999998874 223356778888999999998765 7888888888776544
No 156
>PTZ00062 glutaredoxin; Provisional
Probab=98.31 E-value=2.6e-06 Score=56.42 Aligned_cols=66 Identities=8% Similarity=0.080 Sum_probs=45.9
Q ss_pred hhHHHhhccC--C-cEEEEEeCCChhHHHHHHHHHhcCCc---eEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECC
Q 033962 3 LPKAQETVSS--N-SVVVFSKTLCPFCVSVKELFQQLGVT---FKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGG 74 (107)
Q Consensus 3 ~~~~~~~~~~--~-~v~~y~~~~Cp~C~~a~~~l~~~~i~---~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g 74 (107)
.+.+.+.++. . .|+.|+++|||.|+.+..+|.++.-+ +.++.|+.+ ++..++|++ |-+|
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNEYGVFEFYQNS 72 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCcccceEEEEEECC
Confidence 3455555552 3 45567799999999999999876432 455666543 688999977 4588
Q ss_pred eEEeecH
Q 033962 75 KHIGGCD 81 (107)
Q Consensus 75 ~~ig~~~ 81 (107)
+.++.+.
T Consensus 73 ~~i~r~~ 79 (204)
T PTZ00062 73 QLINSLE 79 (204)
T ss_pred EEEeeee
Confidence 8776653
No 157
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.30 E-value=2.1e-06 Score=53.82 Aligned_cols=53 Identities=8% Similarity=0.211 Sum_probs=38.5
Q ss_pred EEEEeCCChhHHHHHHHHHhcC------CceEEEEcCCCCCchHHHHHHHhhcCCCce-eEE-EE-CCe
Q 033962 16 VVFSKTLCPFCVSVKELFQQLG------VTFKAIELDKESDGSDIQSALAEWTGQKTV-PNV-FI-GGK 75 (107)
Q Consensus 16 ~~y~~~~Cp~C~~a~~~l~~~~------i~~~~~~i~~~~~~~~~~~~l~~~~~~~~v-P~i-~i-~g~ 75 (107)
+-|+++||+.|+.+.+.|++.. +.+-.+|+|.. +++.+.++..+. |++ |. +|+
T Consensus 28 vdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~-------~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 28 IRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV-------PDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC-------HHHHHHcCccCCCcEEEEEECCe
Confidence 4499999999999999998753 23456777766 377888888855 455 33 665
No 158
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.27 E-value=3.6e-06 Score=49.13 Aligned_cols=54 Identities=19% Similarity=0.354 Sum_probs=36.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----C--CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL----G--VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~----~--i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
++.|+++||++|+...+.+.+. . -.+....++.+.. ...+.+.++..++|++++
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA----NKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc----chhhHHhCCCCCcCEEEE
Confidence 6679999999999887777542 2 2344444444331 136677789999998854
No 159
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.27 E-value=4.7e-06 Score=57.42 Aligned_cols=67 Identities=21% Similarity=0.423 Sum_probs=45.2
Q ss_pred HHhhccCCcEEEEEeCCChhHHHHHHHHHh----cCCceEEEEcCCCCCc--h--HHHHHHHhhcCCCceeEEEE
Q 033962 6 AQETVSSNSVVVFSKTLCPFCVSVKELFQQ----LGVTFKAIELDKESDG--S--DIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 6 ~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~----~~i~~~~~~i~~~~~~--~--~~~~~l~~~~~~~~vP~i~i 72 (107)
++++.+...++.|+.+|||+|+.....|.+ +++.+..+++|..... + ..-..+.+.+|..++|++|+
T Consensus 161 l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 161 MKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 444455556777999999999988887754 5667777777764210 0 00124567789999999854
No 160
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.3e-06 Score=51.00 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=68.9
Q ss_pred CcEEEEEeCCChhH------HHHHHHHHhcCCceEEEEcCCCCCchHH-----HHHHHhhcCCCceeEEEECCeEEeecH
Q 033962 13 NSVVVFSKTLCPFC------VSVKELFQQLGVTFKAIELDKESDGSDI-----QSALAEWTGQKTVPNVFIGGKHIGGCD 81 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C------~~a~~~l~~~~i~~~~~~i~~~~~~~~~-----~~~l~~~~~~~~vP~i~i~g~~ig~~~ 81 (107)
..|.+|+++.-+.- +.+..+|+.+.+.|..+||....+...+ .++.+...|....|+||.++++.|+++
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYE 81 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHH
Confidence 35778887655543 2678899999999999999887543322 233444567788899999999999999
Q ss_pred HHHHHHHcCCcHHHHHhcCcc
Q 033962 82 STTALHREGKLVPLLTEAGAV 102 (107)
Q Consensus 82 ~~~~~~~~~~l~~~L~~~~~~ 102 (107)
...+..+.+.|.++|+-++-.
T Consensus 82 ~F~ea~E~ntl~eFL~lap~~ 102 (108)
T KOG4023|consen 82 LFFEAVEQNTLQEFLGLAPPP 102 (108)
T ss_pred HHHHHHHHHHHHHHHccCCCc
Confidence 998888999999999866543
No 161
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.24 E-value=8.3e-06 Score=49.87 Aligned_cols=65 Identities=18% Similarity=0.374 Sum_probs=40.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc---------CCceEEEEcCCCCCc-----------------hHHHHHHHhhcCCCce
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL---------GVTFKAIELDKESDG-----------------SDIQSALAEWTGQKTV 67 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~---------~i~~~~~~i~~~~~~-----------------~~~~~~l~~~~~~~~v 67 (107)
.++.|+.+|||.|++....|.+. ++.+..++++...+. ......+.+.+|..++
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 100 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGI 100 (131)
T ss_pred EEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCC
Confidence 35568899999999877776532 344555565544210 0122456777899999
Q ss_pred eEEEE---CCeEEe
Q 033962 68 PNVFI---GGKHIG 78 (107)
Q Consensus 68 P~i~i---~g~~ig 78 (107)
|++++ +|+.+.
T Consensus 101 P~~~lid~~G~i~~ 114 (131)
T cd03009 101 PTLIILDADGEVVT 114 (131)
T ss_pred CEEEEECCCCCEEc
Confidence 98854 566553
No 162
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.1e-06 Score=55.46 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=54.6
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE-ECCeEEeecHHHHHHHH
Q 033962 16 VVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF-IGGKHIGGCDSTTALHR 88 (107)
Q Consensus 16 ~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~-i~g~~ig~~~~~~~~~~ 88 (107)
.+|.++.||||.+|+.++-=+|||++..-+..+.+. .-.+.-|...||.+. -+|++++++=+|..+..
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~-----Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE-----TPIRMIGQKQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCccc-----ChhhhhcccccceEEccccccchhhhHHHHHHH
Confidence 578889999999999999999999988777666432 223456889999996 58899998888877665
No 163
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.21 E-value=9.4e-06 Score=54.20 Aligned_cols=69 Identities=19% Similarity=0.410 Sum_probs=50.1
Q ss_pred hHHHhhccCCcEEEEEeCCChhHHHHHHHHH----hcCCceEEEEcCCCCC--chH--HHHHHHhhcCCCceeEEEE
Q 033962 4 PKAQETVSSNSVVVFSKTLCPFCVSVKELFQ----QLGVTFKAIELDKESD--GSD--IQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 4 ~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~----~~~i~~~~~~i~~~~~--~~~--~~~~l~~~~~~~~vP~i~i 72 (107)
..|+++.+...+++|..++||+|+....+|+ ++|+++..|++|.... .+. .-..+.+..|...+|++|+
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 4566667777899999999999998877775 4688888888875310 000 0135667789999999975
No 164
>PRK10357 putative glutathione S-transferase; Provisional
Probab=98.20 E-value=8.3e-06 Score=53.29 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=56.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-CCeEEeecHHHHHHHHc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-GGKHIGGCDSTTALHRE 89 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-~g~~ig~~~~~~~~~~~ 89 (107)
+++|+.+.||++++++-+|...+++|+.++++..... ..+.+.+..+.+|+++. +|..+.+...|..++..
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~----~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~ 72 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNAD----NGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIEL 72 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCc----hhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHH
Confidence 3689999999999999999999999999888764322 23345567899999984 77888888888776653
No 165
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.20 E-value=1.9e-05 Score=49.74 Aligned_cols=64 Identities=13% Similarity=0.371 Sum_probs=39.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhc--------------CCceEEEEcCCCCC------------------chHHHHHHHhhc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL--------------GVTFKAIELDKESD------------------GSDIQSALAEWT 62 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~--------------~i~~~~~~i~~~~~------------------~~~~~~~l~~~~ 62 (107)
++.|+++|||.|++..+.|.+. ++.+..++++.... .......+...+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y 108 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQF 108 (146)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHc
Confidence 4558999999999988888652 23444455443211 001122455667
Q ss_pred CCCceeEEEE---CCeEEe
Q 033962 63 GQKTVPNVFI---GGKHIG 78 (107)
Q Consensus 63 ~~~~vP~i~i---~g~~ig 78 (107)
+..++|++|+ +|+.+.
T Consensus 109 ~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 109 SVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred CCCCCCEEEEECCCCcEEe
Confidence 7888998854 566663
No 166
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.17 E-value=2.1e-05 Score=48.30 Aligned_cols=64 Identities=14% Similarity=0.367 Sum_probs=40.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhc---------CCceEEEEcCCCCC-----------------ch-HHHHHHHhhcCCCce
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL---------GVTFKAIELDKESD-----------------GS-DIQSALAEWTGQKTV 67 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~---------~i~~~~~~i~~~~~-----------------~~-~~~~~l~~~~~~~~v 67 (107)
++.|+.+|||.|+.....|.+. ++.+..++++..+. .. .....+.+.++..++
T Consensus 21 ll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~i 100 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGI 100 (132)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCCC
Confidence 4558999999999877666431 34455556655321 00 123456677889999
Q ss_pred eEEE-E--CCeEEe
Q 033962 68 PNVF-I--GGKHIG 78 (107)
Q Consensus 68 P~i~-i--~g~~ig 78 (107)
|+++ + +|+.+.
T Consensus 101 Pt~~lid~~G~iv~ 114 (132)
T cd02964 101 PTLVVLKPDGDVVT 114 (132)
T ss_pred CEEEEECCCCCEEc
Confidence 9885 4 466664
No 167
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=98.16 E-value=1.7e-05 Score=52.45 Aligned_cols=73 Identities=10% Similarity=0.226 Sum_probs=56.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-----CC--eEEeecHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-----GG--KHIGGCDSTTALH 87 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-----~g--~~ig~~~~~~~~~ 87 (107)
+++|+.+ +|+|++++-+|.++|++|+.++++.... ....+++.+.+..+.||++.. || ..+.++..|..++
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKG-GQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCccc-ccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 6789877 6999999999999999999988876432 122246677888899999987 45 3578888888877
Q ss_pred Hc
Q 033962 88 RE 89 (107)
Q Consensus 88 ~~ 89 (107)
.+
T Consensus 80 ~~ 81 (215)
T PRK13972 80 AE 81 (215)
T ss_pred HH
Confidence 64
No 168
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=98.15 E-value=4.3e-05 Score=43.03 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=52.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHh--hcCCCceeEEEECCeEEeecHHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAE--WTGQKTVPNVFIGGKHIGGCDSTTALHR 88 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~--~~~~~~vP~i~i~g~~ig~~~~~~~~~~ 88 (107)
.++|+.+..+.|+.++-+|...|++|+.+.++.. ..+. .+.. ......+|++..||..+.++..+..++.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~ 73 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIA 73 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHHHH
Confidence 4788888889999999999999999998888753 1111 1111 1135689999999999988887777654
No 169
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.14 E-value=6.4e-06 Score=52.96 Aligned_cols=32 Identities=16% Similarity=0.477 Sum_probs=22.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc---CCceEEEEcC
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL---GVTFKAIELD 46 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~---~i~~~~~~i~ 46 (107)
++.|+.+|||.|++....+.+. ++.+..++++
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~ 101 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYK 101 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 5568999999999887777554 5555555543
No 170
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.11 E-value=3.1e-05 Score=50.73 Aligned_cols=71 Identities=23% Similarity=0.455 Sum_probs=46.3
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh--cCCceEEEEcC--CCCCc------------------------------------
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQ--LGVTFKAIELD--KESDG------------------------------------ 51 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~--~~i~~~~~~i~--~~~~~------------------------------------ 51 (107)
...|++|+.+.||||+++...+.. .++.+.++-+. .++..
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~~ 157 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDNP 157 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCch
Confidence 345888999999999999999974 34444333332 11100
Q ss_pred hHHHHHHHhhcCCCceeEEEE-CCeEEeecHH
Q 033962 52 SDIQSALAEWTGQKTVPNVFI-GGKHIGGCDS 82 (107)
Q Consensus 52 ~~~~~~l~~~~~~~~vP~i~i-~g~~ig~~~~ 82 (107)
.+....+.+..|..++|++++ ||+.+.|+..
T Consensus 158 i~~~~~l~~~~gi~gtPtii~~~G~~~~G~~~ 189 (197)
T cd03020 158 VAANLALGRQLGVNGTPTIVLADGRVVPGAPP 189 (197)
T ss_pred HHHHHHHHHHcCCCcccEEEECCCeEecCCCC
Confidence 112234456678899999987 5888888754
No 171
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.10 E-value=9.9e-06 Score=47.20 Aligned_cols=53 Identities=15% Similarity=0.409 Sum_probs=34.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC--------CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE--CCe
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLG--------VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI--GGK 75 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~--------i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i--~g~ 75 (107)
++.|+.+||++|+.....+++.. +.+..+|.+.. .+....+..++|++++ +|.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------~~~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--------DVPSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--------hhhhhccCCCCCEEEEEcCCC
Confidence 56689999999998888776532 23344454432 2344556689998843 454
No 172
>PTZ00102 disulphide isomerase; Provisional
Probab=98.10 E-value=1.2e-05 Score=58.72 Aligned_cols=65 Identities=17% Similarity=0.358 Sum_probs=41.8
Q ss_pred HHhhccCC--cEEEEEeCCChhHHHHHHHHHh-------cC--CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--E
Q 033962 6 AQETVSSN--SVVVFSKTLCPFCVSVKELFQQ-------LG--VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--I 72 (107)
Q Consensus 6 ~~~~~~~~--~v~~y~~~~Cp~C~~a~~~l~~-------~~--i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i 72 (107)
+++.+... -++.|+++||++|+++...+.+ .+ +.+..+|.+.. ..+.+.++..++|+++ .
T Consensus 42 f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-------~~l~~~~~i~~~Pt~~~~~ 114 (477)
T PTZ00102 42 FDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-------MELAQEFGVRGYPTIKFFN 114 (477)
T ss_pred HHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-------HHHHHhcCCCcccEEEEEE
Confidence 34444333 3566899999999987765543 22 44455555544 3677888999999883 4
Q ss_pred CCeEE
Q 033962 73 GGKHI 77 (107)
Q Consensus 73 ~g~~i 77 (107)
+|..+
T Consensus 115 ~g~~~ 119 (477)
T PTZ00102 115 KGNPV 119 (477)
T ss_pred CCceE
Confidence 66543
No 173
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.10 E-value=1.9e-05 Score=51.33 Aligned_cols=34 Identities=21% Similarity=0.478 Sum_probs=24.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc---CCceEEEEcCC
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL---GVTFKAIELDK 47 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~---~i~~~~~~i~~ 47 (107)
.++.|+.+|||+|++....|.+. ++.+..++++.
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~ 107 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKD 107 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 35569999999999887777654 55565565544
No 174
>PLN02395 glutathione S-transferase
Probab=98.09 E-value=2.6e-05 Score=51.34 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=58.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
.+++|+.++| .+++++-+|.+.|++|+.+.++.... ....+++.+.+..+.+|++..+|..+.++..|.+++.+
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~ 75 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKG-EHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAE 75 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccC-CcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence 3789987765 48999999999999999988876421 11123567778889999999999999999888887764
No 175
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.09 E-value=1.7e-05 Score=51.66 Aligned_cols=62 Identities=21% Similarity=0.462 Sum_probs=40.0
Q ss_pred cEEEEEeCCChhHHHHHHHH----HhcCCceEEEEcCCCC-----Cch-HHHHHHHhhcCC--CceeEEEE---CCe
Q 033962 14 SVVVFSKTLCPFCVSVKELF----QQLGVTFKAIELDKES-----DGS-DIQSALAEWTGQ--KTVPNVFI---GGK 75 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l----~~~~i~~~~~~i~~~~-----~~~-~~~~~l~~~~~~--~~vP~i~i---~g~ 75 (107)
++++|+.+|||+|++....| +++++.+.-++++... ... .-...+...+|. .++|+.|+ +|+
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 38889999999999875555 5567777777776542 001 111234556663 68998865 564
No 176
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.08 E-value=1.3e-05 Score=48.24 Aligned_cols=53 Identities=23% Similarity=0.381 Sum_probs=35.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC---------CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLG---------VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~---------i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
++.|+.+||++|+.....+.+.. +.+..+|.+.+. ...+.+.++..++|++++
T Consensus 23 vV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-----~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-----NVALCRDFGVTGYPTLRY 84 (114)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-----hHHHHHhCCCCCCCEEEE
Confidence 45689999999998888776532 223334433321 236677889999998844
No 177
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.08 E-value=1.4e-05 Score=57.90 Aligned_cols=66 Identities=21% Similarity=0.448 Sum_probs=43.8
Q ss_pred hHHHhhccCCc--EEEEEeCCChhHHHHHHHHHh-------cC--CceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--
Q 033962 4 PKAQETVSSNS--VVVFSKTLCPFCVSVKELFQQ-------LG--VTFKAIELDKESDGSDIQSALAEWTGQKTVPNV-- 70 (107)
Q Consensus 4 ~~~~~~~~~~~--v~~y~~~~Cp~C~~a~~~l~~-------~~--i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i-- 70 (107)
+.+++++...+ ++.|+++||++|+.....+.+ .+ +.+..+|.+.. ..+.+.++..++|++
T Consensus 9 ~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 9 DNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-------KDLAQKYGVSGYPTLKI 81 (462)
T ss_pred HHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-------HHHHHhCCCccccEEEE
Confidence 34455555444 566899999999988766653 23 44455555443 367888899999988
Q ss_pred EECCeE
Q 033962 71 FIGGKH 76 (107)
Q Consensus 71 ~i~g~~ 76 (107)
|.+|+.
T Consensus 82 ~~~g~~ 87 (462)
T TIGR01130 82 FRNGED 87 (462)
T ss_pred EeCCcc
Confidence 346664
No 178
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.06 E-value=2.6e-05 Score=49.48 Aligned_cols=62 Identities=19% Similarity=0.474 Sum_probs=39.2
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHh----cCCceEEEEcCCCCC--chH----HHHHHHhhc---CCCceeEEEE
Q 033962 11 SSNSVVVFSKTLCPFCVSVKELFQQ----LGVTFKAIELDKESD--GSD----IQSALAEWT---GQKTVPNVFI 72 (107)
Q Consensus 11 ~~~~v~~y~~~~Cp~C~~a~~~l~~----~~i~~~~~~i~~~~~--~~~----~~~~l~~~~---~~~~vP~i~i 72 (107)
+...++.|+.+|||+|++....|.+ +++.+..++++.... .+. ........+ +..++|++|+
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 3445888999999999988888864 466666677765421 000 011223344 6678998854
No 179
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.6e-05 Score=58.64 Aligned_cols=67 Identities=22% Similarity=0.394 Sum_probs=49.1
Q ss_pred HHHhhccCCcE--EEEEeCCChhHH-------HHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EEC
Q 033962 5 KAQETVSSNSV--VVFSKTLCPFCV-------SVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIG 73 (107)
Q Consensus 5 ~~~~~~~~~~v--~~y~~~~Cp~C~-------~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~ 73 (107)
.+.+.+..... +-|.+|||.+|+ +|-..|.+.+-+.....||...+ ..++..++.+++|++ |.|
T Consensus 34 nf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-----~~~~~~y~v~gyPTlkiFrn 108 (493)
T KOG0190|consen 34 NFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-----SDLASKYEVRGYPTLKIFRN 108 (493)
T ss_pred cHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-----hhhHhhhcCCCCCeEEEEec
Confidence 45555665554 458899999998 66677777766666666666532 478889999999998 668
Q ss_pred CeE
Q 033962 74 GKH 76 (107)
Q Consensus 74 g~~ 76 (107)
|+.
T Consensus 109 G~~ 111 (493)
T KOG0190|consen 109 GRS 111 (493)
T ss_pred CCc
Confidence 874
No 180
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.01 E-value=1.5e-05 Score=60.11 Aligned_cols=59 Identities=12% Similarity=0.246 Sum_probs=38.4
Q ss_pred EEEEEeCCChhHHHHHHHH-------Hh-cCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE-E--CCeE
Q 033962 15 VVVFSKTLCPFCVSVKELF-------QQ-LGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF-I--GGKH 76 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l-------~~-~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~-i--~g~~ 76 (107)
++.|+.+||++|+..++.. ++ .++.+..+|++.++ +...++.+.++..++|+++ + +|+.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~---~~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANN---AEDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCC---hhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 3458999999999876542 12 23445556666542 2234677888999999884 4 4654
No 181
>PRK11752 putative S-transferase; Provisional
Probab=98.00 E-value=4.7e-05 Score=52.14 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=58.4
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEEC----CeEEeec
Q 033962 11 SSNSVVVFSKTLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIG----GKHIGGC 80 (107)
Q Consensus 11 ~~~~v~~y~~~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~----g~~ig~~ 80 (107)
...++++|+.+ +|+|++++-+|.+. +++|+.+.++.... ....+++.+.+....||++..+ |..+.++
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~-~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES 118 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEG-DQFSSGFVEINPNSKIPALLDRSGNPPIRVFES 118 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccc-cccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcH
Confidence 44579999864 99999999999997 88898887765422 1123466778888999999885 3578888
Q ss_pred HHHHHHHHc
Q 033962 81 DSTTALHRE 89 (107)
Q Consensus 81 ~~~~~~~~~ 89 (107)
..|..++.+
T Consensus 119 ~AIl~YL~~ 127 (264)
T PRK11752 119 GAILLYLAE 127 (264)
T ss_pred HHHHHHHHH
Confidence 888887754
No 182
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.95 E-value=3.6e-05 Score=56.65 Aligned_cols=56 Identities=21% Similarity=0.447 Sum_probs=39.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCe
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL-------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGK 75 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~ 75 (107)
++.|+.+||++|+.+...+++. ++.+..+|++.+.. +...+.++..++|++ |.+|.
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~-----~~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK-----EFAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc-----HHHHHHcCCCccceEEEEECCC
Confidence 5569999999999998888654 24566677776521 123456789999988 44653
No 183
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=97.92 E-value=0.00013 Score=40.69 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=52.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCC-CceeEEEEC-CeEEeecHHHHHHH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ-KTVPNVFIG-GKHIGGCDSTTALH 87 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~-~~vP~i~i~-g~~ig~~~~~~~~~ 87 (107)
++++|..++ .|..++-+|...|++|+.+.++.... ....+++.+.... ..+|.+..+ |..+.+...|..++
T Consensus 2 ~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~-~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YL 74 (76)
T PF02798_consen 2 TLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKG-EHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYL 74 (76)
T ss_dssp EEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTT-GGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHH
T ss_pred EEEEECCCC--chHHHHHHHHHhcccCceEEEecccc-cccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHh
Confidence 356676666 88999999999999999888775432 1112567777777 899999999 99998888776654
No 184
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=97.90 E-value=0.00011 Score=41.20 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=45.2
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHH
Q 033962 21 TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHR 88 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~ 88 (107)
+..+.|-++..+|+..|++|+.++....+ .....+.+|.+..||+.++++..+..+++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~----------~~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAE----------FMSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCcc----------ccCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 46788999999999999999988653211 02224779999999999999988877664
No 185
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.89 E-value=0.00014 Score=44.04 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=18.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL 36 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~ 36 (107)
.++.|+.+|||.|+.....|.++
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHH
Confidence 35668999999999877777554
No 186
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=4.4e-05 Score=49.48 Aligned_cols=75 Identities=13% Similarity=0.268 Sum_probs=54.6
Q ss_pred cEEE--EEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHcC
Q 033962 14 SVVV--FSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREG 90 (107)
Q Consensus 14 ~v~~--y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~~ 90 (107)
+.++ ||.+.|.+ ++|..|.=.+++|+++-|+--....+.-.++++.+....||++.+||..+.++-.+..++++.
T Consensus 5 KpiLYSYWrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 5 KPILYSYWRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred cchhhhhhcccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhc
Confidence 4444 56677765 666666666888877777655443444557788888899999999999998888888777654
No 187
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.85 E-value=8.7e-05 Score=47.20 Aligned_cols=62 Identities=24% Similarity=0.434 Sum_probs=38.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-------CCceEEEEcCCCCCchHH-----------------HHHHHhhcCCCceeE
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL-------GVTFKAIELDKESDGSDI-----------------QSALAEWTGQKTVPN 69 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~-------~i~~~~~~i~~~~~~~~~-----------------~~~l~~~~~~~~vP~ 69 (107)
.++.|+.+|||+|+.....|.+. ++.+..++.+... ..+ ...+.+.+|...+|.
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 141 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE--LAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPT 141 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH--HHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCe
Confidence 45678899999999765555332 3444555554331 111 135566778889997
Q ss_pred EE-E--CCeEE
Q 033962 70 VF-I--GGKHI 77 (107)
Q Consensus 70 i~-i--~g~~i 77 (107)
+| + +|+.+
T Consensus 142 ~~lid~~g~i~ 152 (173)
T PRK03147 142 TFLIDKDGKVV 152 (173)
T ss_pred EEEECCCCcEE
Confidence 65 4 47655
No 188
>PRK10542 glutathionine S-transferase; Provisional
Probab=97.83 E-value=8.7e-05 Score=48.32 Aligned_cols=73 Identities=11% Similarity=0.188 Sum_probs=53.3
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-CCeEEeecHHHHHHHHc
Q 033962 16 VVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-GGKHIGGCDSTTALHRE 89 (107)
Q Consensus 16 ~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-~g~~ig~~~~~~~~~~~ 89 (107)
++|+.+ .+.+.+++.+|.+.|++|+.+.++.........+++.+.+..+.+|++.. ||..+.++..|.+++.+
T Consensus 2 ~l~~~~-~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~ 75 (201)
T PRK10542 2 KLFYKP-GACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLAD 75 (201)
T ss_pred ceeecc-cHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHH
Confidence 567665 34578888999999999998877754211111245677788899999986 77889888888887653
No 189
>PLN02309 5'-adenylylsulfate reductase
Probab=97.82 E-value=7.7e-05 Score=54.86 Aligned_cols=52 Identities=23% Similarity=0.530 Sum_probs=35.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-------CCceEEEEcCCCCCchHHHHHHH-hhcCCCceeEEE
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL-------GVTFKAIELDKESDGSDIQSALA-EWTGQKTVPNVF 71 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~l~-~~~~~~~vP~i~ 71 (107)
-++.|+.+||++|+.+...+.+. ++.+..+|++... ..+. +.++..++|+++
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~------~~la~~~~~I~~~PTil 427 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ------KEFAKQELQLGSFPTIL 427 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc------hHHHHhhCCCceeeEEE
Confidence 36679999999999988888664 2445555655221 1334 357999999983
No 190
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.82 E-value=0.00025 Score=40.80 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=24.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----C--CceEEEEcCCCCCchHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL----G--VTFKAIELDKESDGSDIQ 55 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~----~--i~~~~~~i~~~~~~~~~~ 55 (107)
++.|+++||+.|++..+.|.+. + -.++.+-|..+++..++.
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~ 51 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWK 51 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHH
Confidence 5679999999999887777542 3 344444444443333333
No 191
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=97.81 E-value=0.00036 Score=39.56 Aligned_cols=72 Identities=8% Similarity=0.038 Sum_probs=49.1
Q ss_pred EEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchH-HHHHHHhh----cCCCceeEEEECCeEEeecHHHHHHHH
Q 033962 17 VFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSD-IQSALAEW----TGQKTVPNVFIGGKHIGGCDSTTALHR 88 (107)
Q Consensus 17 ~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~-~~~~l~~~----~~~~~vP~i~i~g~~ig~~~~~~~~~~ 88 (107)
+|....-+.|++++-+|...|++|+.+.++....... -.+..... .....+|++..||..+..+..|..++.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHh
Confidence 4444445788999999999999999888875431100 01111111 145799999999999988888877664
No 192
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.81 E-value=0.00013 Score=50.02 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=50.4
Q ss_pred hHHHhhccCCcEEEEEeCCChhHHHHHHHH----HhcCCceEEEEcCCCCC--chH--HHHHHHhhcCCCceeEEEE
Q 033962 4 PKAQETVSSNSVVVFSKTLCPFCVSVKELF----QQLGVTFKAIELDKESD--GSD--IQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 4 ~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l----~~~~i~~~~~~i~~~~~--~~~--~~~~l~~~~~~~~vP~i~i 72 (107)
+.|+++.+...+++|..+.||+|++...+| +++|++...+++|.... .+. .-..+++..|...+|++|+
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 456667777889999999999999887777 45788888888887521 111 1124566778899999965
No 193
>PTZ00102 disulphide isomerase; Provisional
Probab=97.81 E-value=3.5e-05 Score=56.37 Aligned_cols=77 Identities=9% Similarity=0.242 Sum_probs=45.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC--------CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE--CCeEE-eecHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLG--------VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI--GGKHI-GGCDST 83 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~--------i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i--~g~~i-g~~~~~ 83 (107)
++.|+++||++|+.....+.+.. +.+..+|.+... ......+..++|++++ +|..+ ..+.
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~-------~~~~~~~v~~~Pt~~~~~~~~~~~~~~~-- 449 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE-------TPLEEFSWSAFPTILFVKAGERTPIPYE-- 449 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc-------cchhcCCCcccCeEEEEECCCcceeEec--
Confidence 55689999999999988886542 234445555442 2355667889998843 44322 1111
Q ss_pred HHHHHcCCcHHHHHhcCc
Q 033962 84 TALHREGKLVPLLTEAGA 101 (107)
Q Consensus 84 ~~~~~~~~l~~~L~~~~~ 101 (107)
.......|.++|+++..
T Consensus 450 -G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 450 -GERTVEGFKEFVNKHAT 466 (477)
T ss_pred -CcCCHHHHHHHHHHcCC
Confidence 11123356666666553
No 194
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.76 E-value=0.00017 Score=42.01 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=24.0
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc-------CCceEEEEcCCC
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQL-------GVTFKAIELDKE 48 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~-------~i~~~~~~i~~~ 48 (107)
..++.|+.+|||+|+.....|.+. ++.+..++++..
T Consensus 21 ~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 21 VVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 346678899999999666666443 344555666553
No 195
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00024 Score=47.07 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=50.1
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHH
Q 033962 21 TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHR 88 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~ 88 (107)
-.||+|+++-..|...+++|...-||..... +++...++.+.+|.+..||+.+.+.+.|.+.++
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp----~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKP----EWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCc----HHHHhhCCCCCCCeEEeCCceeccHHHHHHHHH
Confidence 4799999999999999998855444443222 466778888999999999999998888776544
No 196
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.73 E-value=0.00011 Score=42.89 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=37.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC------CceEEEEcCCCCCchHHHHHHHhhcCCC--ceeEEEE
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLG------VTFKAIELDKESDGSDIQSALAEWTGQK--TVPNVFI 72 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~------i~~~~~~i~~~~~~~~~~~~l~~~~~~~--~vP~i~i 72 (107)
-+++|+.+||+.|..++..+++.. +.|..+|++.. ..+.+.+|.. ++|++.+
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~-------~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF-------GRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh-------HHHHHHcCCChhhCCEEEE
Confidence 456688899999999999987642 34445555443 3567778887 9999854
No 197
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.73 E-value=0.00034 Score=38.93 Aligned_cols=58 Identities=17% Similarity=0.356 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 21 TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
+.+|+|-++..+|+-.+++|+.+...... ....+.+|.+..+|+.+++++.+.+++++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~~-----------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNPW-----------RSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCCC-----------CCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 56799999999999999999776443211 22456799999999999999988886653
No 198
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.73 E-value=0.00019 Score=40.70 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=40.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhc------CCceEEEEcCCCCCc--------------------hHHH-----HHHHhhcC
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL------GVTFKAIELDKESDG--------------------SDIQ-----SALAEWTG 63 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~--------------------~~~~-----~~l~~~~~ 63 (107)
|.+|+.+.||+|..+...+.+. ++.+..+.+...... .+.. ..+....|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 5789999999999999888774 345566555443320 1111 12334567
Q ss_pred CCceeEEEECC
Q 033962 64 QKTVPNVFIGG 74 (107)
Q Consensus 64 ~~~vP~i~i~g 74 (107)
..++|+++++|
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 89999999999
No 199
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.72 E-value=0.00041 Score=42.10 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=46.4
Q ss_pred HHHhhccCCc--EEEEEe--CCCh---hHHHHHHHHHhc--CCceEEEEcCCCCCchHHHHHHHhhcCCC--ceeEE--E
Q 033962 5 KAQETVSSNS--VVVFSK--TLCP---FCVSVKELFQQL--GVTFKAIELDKESDGSDIQSALAEWTGQK--TVPNV--F 71 (107)
Q Consensus 5 ~~~~~~~~~~--v~~y~~--~~Cp---~C~~a~~~l~~~--~i~~~~~~i~~~~~~~~~~~~l~~~~~~~--~vP~i--~ 71 (107)
.+.+.+...+ ++-|.. |||. +|.++..-+... .+.+-.+|++... ......|.+++|+. ++|++ |
T Consensus 10 nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~--~~~~~~L~~~y~I~~~gyPTl~lF 87 (116)
T cd03007 10 TFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYG--EKLNMELGERYKLDKESYPVIYLF 87 (116)
T ss_pred hHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEeccccc--chhhHHHHHHhCCCcCCCCEEEEE
Confidence 3455555554 455888 9999 999887666543 3566667775432 22235789999998 99988 5
Q ss_pred ECCe
Q 033962 72 IGGK 75 (107)
Q Consensus 72 i~g~ 75 (107)
.+|.
T Consensus 88 ~~g~ 91 (116)
T cd03007 88 HGGD 91 (116)
T ss_pred eCCC
Confidence 6773
No 200
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=6.6e-05 Score=51.00 Aligned_cols=57 Identities=25% Similarity=0.506 Sum_probs=43.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCce-----EEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEe
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTF-----KAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIG 78 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~-----~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig 78 (107)
++=|+.+||..|++...++..+.-+| -.+|++.. +..+.-+|....|++ |.||.-+.
T Consensus 25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c-------~~taa~~gV~amPTFiff~ng~kid 88 (288)
T KOG0908|consen 25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDEC-------RGTAATNGVNAMPTFIFFRNGVKID 88 (288)
T ss_pred EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHh-------hchhhhcCcccCceEEEEecCeEee
Confidence 44499999999999999999875544 56777665 244667789999987 67997663
No 201
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=6.9e-05 Score=45.43 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=32.2
Q ss_pred CCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCC-CceeEEEE
Q 033962 21 TLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQ-KTVPNVFI 72 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~-~~vP~i~i 72 (107)
+|||+|..|...+.+- ++.+..+++...+.=..-.-.++...+. ..+|++.-
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR 101 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence 7999999999988652 4557778887653211111123333344 67898853
No 202
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.70 E-value=0.00044 Score=42.76 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=19.7
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQ 35 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~ 35 (107)
...|++|+.++||+|++....+.+
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 346788999999999988777765
No 203
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.69 E-value=0.00037 Score=47.60 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=22.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----cCCceEEEE
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQ----LGVTFKAIE 44 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~----~~i~~~~~~ 44 (107)
.|++|+.+.||||+++..-+.. -.+.+.++.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEe
Confidence 4889999999999998766543 235555443
No 204
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.69 E-value=0.00015 Score=49.45 Aligned_cols=69 Identities=13% Similarity=0.236 Sum_probs=48.8
Q ss_pred hHHHhhccCCcEEEEEeCCChhHHHHHHHHH----hcCCceEEEEcCCCCC--chH--HHHHHHhhcCCCceeEEEE
Q 033962 4 PKAQETVSSNSVVVFSKTLCPFCVSVKELFQ----QLGVTFKAIELDKESD--GSD--IQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 4 ~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~----~~~i~~~~~~i~~~~~--~~~--~~~~l~~~~~~~~vP~i~i 72 (107)
+.|+++.+...+++|..+.||+|++...+|+ ++|++..-+.+|.... .+. .-....+..|...+|.+|+
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence 4566777788899999999999998777775 4688888888876321 111 1112345678889999975
No 205
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.66 E-value=0.00029 Score=45.97 Aligned_cols=63 Identities=13% Similarity=0.246 Sum_probs=36.6
Q ss_pred EEEEEeCCChhHHHHHHHH----HhcCCceEEEEcCCCCCch-------------HHHHHHHhhcCCCceeEEEE---CC
Q 033962 15 VVVFSKTLCPFCVSVKELF----QQLGVTFKAIELDKESDGS-------------DIQSALAEWTGQKTVPNVFI---GG 74 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l----~~~~i~~~~~~i~~~~~~~-------------~~~~~l~~~~~~~~vP~i~i---~g 74 (107)
++.|+.+|||.|++....+ ++.++.+..+..+..++.. ....++.+.++...+|..|+ +|
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID~~G 157 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLDQDG 157 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEEECCCC
Confidence 5668999999999766555 3445666555532211000 01124445567788997755 46
Q ss_pred eEE
Q 033962 75 KHI 77 (107)
Q Consensus 75 ~~i 77 (107)
+.+
T Consensus 158 ~I~ 160 (189)
T TIGR02661 158 KIR 160 (189)
T ss_pred eEE
Confidence 654
No 206
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.65 E-value=0.00031 Score=42.04 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=36.6
Q ss_pred EEEEeCCChhHHHHHH-HHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE-EE---CCeEEe
Q 033962 16 VVFSKTLCPFCVSVKE-LFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV-FI---GGKHIG 78 (107)
Q Consensus 16 ~~y~~~~Cp~C~~a~~-~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i-~i---~g~~ig 78 (107)
+.++.+||++|+...+ .|.+- +-.|..+.++... .+ ...+...++..++|++ |+ +|+.+.
T Consensus 22 v~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~--~e-~~~~~~~~~~~~~P~~~~i~~~~g~~l~ 92 (114)
T cd02958 22 VYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS--SE-GQRFLQSYKVDKYPHIAIIDPRTGEVLK 92 (114)
T ss_pred EEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC--cc-HHHHHHHhCccCCCeEEEEeCccCcEeE
Confidence 3467799999997643 44332 2235555454432 12 2467788899999988 44 455553
No 207
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.64 E-value=5.6e-05 Score=56.35 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=17.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL 36 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~ 36 (107)
++.|+++|||.|++....|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 4559999999999988877654
No 208
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.62 E-value=0.00012 Score=44.09 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=34.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcC--CceEEEEcCCCCCchHH-----------------HHHHHhhcCCCceeEEEE
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLG--VTFKAIELDKESDGSDI-----------------QSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~--i~~~~~~i~~~~~~~~~-----------------~~~l~~~~~~~~vP~i~i 72 (107)
..++.|+.+|||+|+.....|.+.. +.+..+.++.+. ..++ ...+.+.++..++|++++
T Consensus 22 ~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~v 99 (123)
T cd03011 22 PVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGD-DGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIVI 99 (123)
T ss_pred EEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCC-HHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEEE
Confidence 3466789999999998877776542 233333332210 0100 124566778888998754
No 209
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.59 E-value=0.00045 Score=43.27 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=23.1
Q ss_pred CcEEEEEeCCChhHHHHHHHH----Hhc----CCceEEEEcC
Q 033962 13 NSVVVFSKTLCPFCVSVKELF----QQL----GVTFKAIELD 46 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l----~~~----~i~~~~~~i~ 46 (107)
..|++|....||+|.+....+ +++ .+.|.++++.
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 347889999999999765555 343 4566777664
No 210
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.54 E-value=0.00032 Score=39.63 Aligned_cols=52 Identities=19% Similarity=0.473 Sum_probs=30.0
Q ss_pred EEEEEeCCChhHHHHHHHHHh-------cCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQ-------LGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
++.|+.+||++|+.....+-+ ..-.|..+.++.+...... .+.. .++|++++
T Consensus 21 lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~P~~~~ 79 (82)
T PF13899_consen 21 LVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGYPTFFF 79 (82)
T ss_dssp EEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSSSEEEE
T ss_pred EEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccCCEEEE
Confidence 455889999999988777622 2334555555554321111 2222 44998854
No 211
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.54 E-value=0.00024 Score=42.12 Aligned_cols=56 Identities=13% Similarity=0.366 Sum_probs=31.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC----CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLG----VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF 71 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~----i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~ 71 (107)
.++.|+.+|||+|+.....+.+.. -.+..+-+. +.+ .+....+.+..+...+|.++
T Consensus 24 vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~-~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 24 TLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGE-KAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred EEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCC-HHHHHHHHHHhCCCCCcEEe
Confidence 356689999999998877776532 123333332 211 23333445555555566654
No 212
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=97.53 E-value=0.0008 Score=41.88 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=54.4
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCC----CceeEEEECCeEEeecH---HH
Q 033962 11 SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ----KTVPNVFIGGKHIGGCD---ST 83 (107)
Q Consensus 11 ~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~----~~vP~i~i~g~~ig~~~---~~ 83 (107)
....+++|-+|+|.=|+.-.+.|+.+|+++..++.+.. ..++++.|+ .+==+.+|||.+|-|.- ++
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~-------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI 96 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF-------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAI 96 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH-------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHH
Confidence 45679999999999999999999999988877776654 356666553 23448899999998873 44
Q ss_pred HHHHHcC
Q 033962 84 TALHREG 90 (107)
Q Consensus 84 ~~~~~~~ 90 (107)
.+++.++
T Consensus 97 ~~ll~~~ 103 (149)
T COG3019 97 ARLLAEK 103 (149)
T ss_pred HHHHhCC
Confidence 4444443
No 213
>PTZ00057 glutathione s-transferase; Provisional
Probab=97.53 E-value=0.00087 Score=44.05 Aligned_cols=74 Identities=9% Similarity=0.136 Sum_probs=55.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHH--HHHHH--hhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDI--QSALA--EWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~--~~~l~--~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
.+++|+.+..+.|+.++-+|...|++|+.+.++... ... .+++. ..+..+.+|++..||..+..+..|..++.+
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~--~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~ 81 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENG--DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSK 81 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccc--hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence 478888778899999999999999999998775421 111 11222 245678999999999999888888776543
No 214
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.46 E-value=0.00098 Score=42.37 Aligned_cols=69 Identities=22% Similarity=0.448 Sum_probs=42.9
Q ss_pred hccCCcEEE-EEeCCChhHHHHHHHH----Hh---cCCceEEEEcCCCCCch--------------------HHHHHHHh
Q 033962 9 TVSSNSVVV-FSKTLCPFCVSVKELF----QQ---LGVTFKAIELDKESDGS--------------------DIQSALAE 60 (107)
Q Consensus 9 ~~~~~~v~~-y~~~~Cp~C~~a~~~l----~~---~~i~~~~~~i~~~~~~~--------------------~~~~~l~~ 60 (107)
.....-|.+ |+..|||.|+.....| .+ .+-+++.+=|+.+.+.. ...+.+.+
T Consensus 30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ 109 (157)
T KOG2501|consen 30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE 109 (157)
T ss_pred hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH
Confidence 344444555 6779999999544444 33 34567776666654332 34455566
Q ss_pred hcCCCceeEEEE---CCeEE
Q 033962 61 WTGQKTVPNVFI---GGKHI 77 (107)
Q Consensus 61 ~~~~~~vP~i~i---~g~~i 77 (107)
.++..++|.+.+ +|+.+
T Consensus 110 ky~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 110 KYEVKGIPALVILKPDGTVV 129 (157)
T ss_pred hcccCcCceeEEecCCCCEe
Confidence 788889998854 67666
No 215
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00078 Score=45.23 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=61.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
++++|+.+.-|.|+++...++..|++|+.+.++.... ....+++...+...++|++.-||-.+-+...|..++.+
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~g-e~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ 76 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKG-EQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAE 76 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeecccc-ccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHH
Confidence 5789999999999999999999999999886655422 33345667788889999999999999888777766544
No 216
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.43 E-value=0.00034 Score=48.92 Aligned_cols=71 Identities=21% Similarity=0.428 Sum_probs=50.5
Q ss_pred ChhhHHHhhccCCcEEE--EEeCCChhHHHHHHHHHhcCC-----------ceEEEEcCCCCCchHHHHHHHhhcCCCce
Q 033962 1 MALPKAQETVSSNSVVV--FSKTLCPFCVSVKELFQQLGV-----------TFKAIELDKESDGSDIQSALAEWTGQKTV 67 (107)
Q Consensus 1 ~a~~~~~~~~~~~~v~~--y~~~~Cp~C~~a~~~l~~~~i-----------~~~~~~i~~~~~~~~~~~~l~~~~~~~~v 67 (107)
|..+.+..++....+++ |+++||+++++.+.++.+..- -+-.+|.+.. ..++.++.+...
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-------~~ia~ky~I~Ky 73 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-------DDIADKYHINKY 73 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-------hHHhhhhccccC
Confidence 34455666777776655 889999999999999976422 1344555544 477888888999
Q ss_pred eEE--EECCeEEe
Q 033962 68 PNV--FIGGKHIG 78 (107)
Q Consensus 68 P~i--~i~g~~ig 78 (107)
|++ |.||..+.
T Consensus 74 PTlKvfrnG~~~~ 86 (375)
T KOG0912|consen 74 PTLKVFRNGEMMK 86 (375)
T ss_pred ceeeeeeccchhh
Confidence 988 77886543
No 217
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=97.39 E-value=0.00088 Score=45.88 Aligned_cols=68 Identities=19% Similarity=0.493 Sum_probs=51.3
Q ss_pred ccCCcEEEEEe---CCC----hhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHH
Q 033962 10 VSSNSVVVFSK---TLC----PFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDS 82 (107)
Q Consensus 10 ~~~~~v~~y~~---~~C----p~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~ 82 (107)
.+...|.+|.- ..| |+|-++..||+..+|+|+.++-... .++..+++|.|-.||+++.+++.
T Consensus 41 ~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-----------~rSr~G~lPFIELNGe~iaDS~~ 109 (281)
T KOG4244|consen 41 YKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-----------RRSRNGTLPFIELNGEHIADSDL 109 (281)
T ss_pred cccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-----------eeccCCCcceEEeCCeeccccHH
Confidence 33444666654 344 6999999999999999998776542 24456889999999999999987
Q ss_pred HHHHHH
Q 033962 83 TTALHR 88 (107)
Q Consensus 83 ~~~~~~ 88 (107)
+...++
T Consensus 110 I~~~L~ 115 (281)
T KOG4244|consen 110 IEDRLR 115 (281)
T ss_pred HHHHHH
Confidence 765443
No 218
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.39 E-value=0.0013 Score=41.86 Aligned_cols=24 Identities=21% Similarity=0.548 Sum_probs=19.4
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQ 35 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~ 35 (107)
...|+.|+...||+|..+...+..
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 456888999999999987777754
No 219
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.36 E-value=0.00066 Score=41.99 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=18.7
Q ss_pred HHHhhccCC-cE-EEEEeCCChhHHHHHHHH
Q 033962 5 KAQETVSSN-SV-VVFSKTLCPFCVSVKELF 33 (107)
Q Consensus 5 ~~~~~~~~~-~v-~~y~~~~Cp~C~~a~~~l 33 (107)
.+..+.+.. +| +.|+++|||+|++.....
T Consensus 15 al~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 15 GLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 334443333 34 457889999999877754
No 220
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.35 E-value=0.00019 Score=50.22 Aligned_cols=59 Identities=24% Similarity=0.479 Sum_probs=38.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEE----EEcCCCCCchHHHHHHHhhcCCCceeEE-EECCe
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKA----IELDKESDGSDIQSALAEWTGQKTVPNV-FIGGK 75 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~----~~i~~~~~~~~~~~~l~~~~~~~~vP~i-~i~g~ 75 (107)
.+-|..|||.+|++..++.++-|..... +.+..-. .-....++...|..+.|+| |..|.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlD--aT~f~aiAnefgiqGYPTIk~~kgd 110 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLD--ATRFPAIANEFGIQGYPTIKFFKGD 110 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccc--cccchhhHhhhccCCCceEEEecCC
Confidence 4558899999999999999886544321 1111111 1123577888899999998 45443
No 221
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=97.33 E-value=0.0018 Score=37.28 Aligned_cols=66 Identities=18% Similarity=0.330 Sum_probs=37.4
Q ss_pred EEEEe-CCChhHH------HHHHHHHhc--------CCceEEEEcCCCCCchHHHHHHHhhcC-CCceeEEEECCeEEee
Q 033962 16 VVFSK-TLCPFCV------SVKELFQQL--------GVTFKAIELDKESDGSDIQSALAEWTG-QKTVPNVFIGGKHIGG 79 (107)
Q Consensus 16 ~~y~~-~~Cp~C~------~a~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~l~~~~~-~~~vP~i~i~g~~ig~ 79 (107)
++|++ --|+.|. ..-.||+.. .+.|+++||...++....++...+... ..=.|.++++|+.+|.
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 46777 3577774 555666432 345789999887765434434444433 3457999999999987
Q ss_pred cH
Q 033962 80 CD 81 (107)
Q Consensus 80 ~~ 81 (107)
..
T Consensus 81 Gn 82 (93)
T PF07315_consen 81 GN 82 (93)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 222
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.30 E-value=0.0021 Score=38.97 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=16.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHh
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQ 35 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~ 35 (107)
.|+.|+.+|||.|.....-|.+
T Consensus 26 vvl~F~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYLTD 47 (126)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 3566899999999977666644
No 223
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.28 E-value=0.00078 Score=41.06 Aligned_cols=49 Identities=14% Similarity=0.367 Sum_probs=26.7
Q ss_pred CCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHH---HHHHh--hcCCCceeEEEE
Q 033962 21 TLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQ---SALAE--WTGQKTVPNVFI 72 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~---~~l~~--~~~~~~vP~i~i 72 (107)
+|||+|+.|...+.+. +..+.++.+...+ .++ ..++. .....++|+++-
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~---~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRP---EWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HH---HHC-TTSHHHH--CC---SSSEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHH---HhCCCCCCceEcceeeeeecceEEE
Confidence 7999999999877652 3345566765431 111 02333 456789999964
No 224
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.28 E-value=0.001 Score=53.55 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=17.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL 36 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~ 36 (107)
++-||.+|||.|+...+.|.++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHH
Confidence 4559999999999888877654
No 225
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0016 Score=41.49 Aligned_cols=65 Identities=15% Similarity=0.308 Sum_probs=40.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhc---------CCceEEEEcCCCC---------CchHHHHHHHhhcCCCceeEEEE---C
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL---------GVTFKAIELDKES---------DGSDIQSALAEWTGQKTVPNVFI---G 73 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~---------~i~~~~~~i~~~~---------~~~~~~~~l~~~~~~~~vP~i~i---~ 73 (107)
+.+|.+++|+||.+.++-+..- ++...++++.... +...-.++|++.++.++.|+++. +
T Consensus 46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~ 125 (182)
T COG2143 46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKT 125 (182)
T ss_pred EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCC
Confidence 6789999999999777665321 2233334443221 01123458899999999999854 3
Q ss_pred CeEEee
Q 033962 74 GKHIGG 79 (107)
Q Consensus 74 g~~ig~ 79 (107)
|+-|+.
T Consensus 126 Gk~Il~ 131 (182)
T COG2143 126 GKTILE 131 (182)
T ss_pred CCEEEe
Confidence 455543
No 226
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=97.18 E-value=0.00081 Score=44.59 Aligned_cols=67 Identities=25% Similarity=0.382 Sum_probs=36.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCc--e--EEE-----------EcCCCCCchHHHHHHHhhcCC--CceeEEEECCe-E
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVT--F--KAI-----------ELDKESDGSDIQSALAEWTGQ--KTVPNVFIGGK-H 76 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~--~--~~~-----------~i~~~~~~~~~~~~l~~~~~~--~~vP~i~i~g~-~ 76 (107)
|.+|++.+|+.|.-|-.+|.++.-. + --. |--..+...+.+..+.+..|. -..|++++||. .
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 6799999999999999999875221 1 111 111122223445566666654 45799999996 4
Q ss_pred EeecH
Q 033962 77 IGGCD 81 (107)
Q Consensus 77 ig~~~ 81 (107)
..|++
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 44444
No 227
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.05 E-value=0.0013 Score=47.66 Aligned_cols=49 Identities=14% Similarity=0.402 Sum_probs=33.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhc---------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL---------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~---------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
++.|+++||++|+...+.+.+. ++.+..+|++..+ +.. .+..++|++++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--------~~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--------VPP-FEVEGFPTIKF 425 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--------cCC-CCccccCEEEE
Confidence 5568999999999888877652 2344556665432 222 67889998844
No 228
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.00 E-value=0.006 Score=37.68 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=24.3
Q ss_pred EEEEEeC-CChhHHHHHHHHHh-------cCCceEEEEcCCC
Q 033962 15 VVVFSKT-LCPFCVSVKELFQQ-------LGVTFKAIELDKE 48 (107)
Q Consensus 15 v~~y~~~-~Cp~C~~a~~~l~~-------~~i~~~~~~i~~~ 48 (107)
++.|+.+ |||+|+.....|.+ .++.+..+..+.+
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~ 73 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD 73 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS
T ss_pred EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC
Confidence 5668888 99999977766644 3566666766665
No 229
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.96 E-value=0.0018 Score=44.65 Aligned_cols=83 Identities=25% Similarity=0.309 Sum_probs=52.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECCeEEeecHHHHHH-
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGGKHIGGCDSTTAL- 86 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g~~ig~~~~~~~~- 86 (107)
|+.++.+.++-|..+-..|..+ .+.|..+....-+ +...++...+|+|+ .+|..++.+-.+.+.
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~--------~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~ 221 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP--------ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLL 221 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC--------TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC--------cccCCcccCCCEEEEEECCEEEEeEEehHHhc
Confidence 4457789999999888888765 3445555544321 13455678899884 599888776544332
Q ss_pred ---HHcCCcHHHHHhcCccccc
Q 033962 87 ---HREGKLVPLLTEAGAVAKT 105 (107)
Q Consensus 87 ---~~~~~l~~~L~~~~~~~~~ 105 (107)
+....|+.+|.+.|++-.+
T Consensus 222 g~df~~~dlE~~L~~~G~l~~k 243 (265)
T PF02114_consen 222 GDDFFTEDLEAFLIEYGVLPEK 243 (265)
T ss_dssp -TT--HHHHHHHHHTTTSSS--
T ss_pred CCCCCHHHHHHHHHHcCCCCCc
Confidence 3344799999999998554
No 230
>smart00594 UAS UAS domain.
Probab=96.91 E-value=0.01 Score=35.96 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=36.1
Q ss_pred HHHhhccCC--cEEEEEeCCChhHHHHHH-HHHhc------CCceEE--EEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 5 KAQETVSSN--SVVVFSKTLCPFCVSVKE-LFQQL------GVTFKA--IELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 5 ~~~~~~~~~--~v~~y~~~~Cp~C~~a~~-~l~~~------~i~~~~--~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
.++...+.. .++.+..+||++|+...+ +|.+. +-.|.. +|+... +. ..+...++..++|++.+
T Consensus 19 a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~----eg-~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 19 AKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTS----EG-QRVSQFYKLDSFPYVAI 92 (122)
T ss_pred HHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCCh----hH-HHHHHhcCcCCCCEEEE
Confidence 344444433 345567899999985443 33221 113544 444433 12 36788889999998843
No 231
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0081 Score=40.09 Aligned_cols=60 Identities=27% Similarity=0.375 Sum_probs=46.1
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCc--eEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEe
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQLGVT--FKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIG 78 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~~~i~--~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig 78 (107)
...|.+|+..+|-.|-..-..|++.|+- +.+++....+ .+.-..+.-++|.+|++|+.+.
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~-------f~~~~~~V~SvP~Vf~DGel~~ 71 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPP-------FLAFEKGVISVPSVFIDGELVY 71 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCCh-------HHHhhcceeecceEEEcCeEEE
Confidence 3468999999999999999999999873 5566655542 2333457889999999998663
No 232
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.015 Score=33.90 Aligned_cols=70 Identities=14% Similarity=0.298 Sum_probs=44.0
Q ss_pred cCCcEEEEEe-CCChhHH------HHHHHHHhc------C--CceEEEEcCCCCCchHHHHHHHhh-c-CCCceeEEEEC
Q 033962 11 SSNSVVVFSK-TLCPFCV------SVKELFQQL------G--VTFKAIELDKESDGSDIQSALAEW-T-GQKTVPNVFIG 73 (107)
Q Consensus 11 ~~~~v~~y~~-~~Cp~C~------~a~~~l~~~------~--i~~~~~~i~~~~~~~~~~~~l~~~-~-~~~~vP~i~i~ 73 (107)
+..++++|++ .-|..|. ..-.||+.. + ..|+++||...+...... .++.. . ...-.|.++++
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~-~~aekI~~dey~YPlivve 81 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDL-QFAEKIEQDEYFYPLIVVE 81 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHH-HHHHHHhcccccceEEEEc
Confidence 4456888987 4677775 555666532 3 346888887655433333 33333 2 23457999999
Q ss_pred CeEEeecH
Q 033962 74 GKHIGGCD 81 (107)
Q Consensus 74 g~~ig~~~ 81 (107)
|+.++...
T Consensus 82 deiVaeGn 89 (106)
T COG4837 82 DEIVAEGN 89 (106)
T ss_pred ceEeecCC
Confidence 99997653
No 233
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.75 E-value=0.0052 Score=39.44 Aligned_cols=67 Identities=21% Similarity=0.433 Sum_probs=29.2
Q ss_pred CCcEEE-EEeCCChhHHHHHH-HHHh------cCCceEEEEcCCCCC--chHHHH-HHHhhcCCCceeEE-EE--CCeEE
Q 033962 12 SNSVVV-FSKTLCPFCVSVKE-LFQQ------LGVTFKAIELDKESD--GSDIQS-ALAEWTGQKTVPNV-FI--GGKHI 77 (107)
Q Consensus 12 ~~~v~~-y~~~~Cp~C~~a~~-~l~~------~~i~~~~~~i~~~~~--~~~~~~-~l~~~~~~~~vP~i-~i--~g~~i 77 (107)
.++|.+ ++++||.+|+.+.. .+.+ ++-.|.-|.+|.++. -..... .....+|..+.|.. |. +|+.+
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 344544 67899999995543 4433 233465555555432 111211 12233478899976 44 66655
Q ss_pred e
Q 033962 78 G 78 (107)
Q Consensus 78 g 78 (107)
.
T Consensus 117 ~ 117 (163)
T PF03190_consen 117 F 117 (163)
T ss_dssp E
T ss_pred e
Confidence 3
No 234
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.70 E-value=0.0065 Score=39.75 Aligned_cols=38 Identities=13% Similarity=-0.029 Sum_probs=28.6
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHh---cCCce------EEEEcCCC
Q 033962 11 SSNSVVVFSKTLCPFCVSVKELFQQ---LGVTF------KAIELDKE 48 (107)
Q Consensus 11 ~~~~v~~y~~~~Cp~C~~a~~~l~~---~~i~~------~~~~i~~~ 48 (107)
....++-|+.+||+.|+.-.++|.+ .++++ ..+|++..
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 3345667999999999987777765 46777 77887764
No 235
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.68 E-value=0.0048 Score=46.49 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=49.6
Q ss_pred cEEE-EEeCCChhHHHHHHHHHh--------cCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE-EC--CeEEeecH
Q 033962 14 SVVV-FSKTLCPFCVSVKELFQQ--------LGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF-IG--GKHIGGCD 81 (107)
Q Consensus 14 ~v~~-y~~~~Cp~C~~a~~~l~~--------~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~-i~--g~~ig~~~ 81 (107)
+|.+ |+.+||-.|+..++..-+ .++-.-..|+..+ +++..+. .+++|.-++|.++ .+ |+..-.
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~--~p~~~~l-Lk~~~~~G~P~~~ff~~~g~e~~~-- 550 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTAN--DPAITAL-LKRLGVFGVPTYLFFGPQGSEPEI-- 550 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCC--CHHHHHH-HHHcCCCCCCEEEEECCCCCcCcC--
Confidence 4554 999999999977776642 2333344555444 4666644 4567999999884 43 443322
Q ss_pred HHHHHHHcCCcHHHHHhc
Q 033962 82 STTALHREGKLVPLLTEA 99 (107)
Q Consensus 82 ~~~~~~~~~~l~~~L~~~ 99 (107)
+-..++.+.+.+.|++.
T Consensus 551 -l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 551 -LTGFLTADAFLEHLERA 567 (569)
T ss_pred -CcceecHHHHHHHHHHh
Confidence 34455566677777654
No 236
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.66 E-value=0.014 Score=35.77 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCcEEEEEeCCChh-HHHHHHHHHh-------cC---CceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE
Q 033962 12 SNSVVVFSKTLCPF-CVSVKELFQQ-------LG---VTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF 71 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~-C~~a~~~l~~-------~~---i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~ 71 (107)
...|++|+.+|||+ |......|.+ .+ +.+..+.++...+..+....+.+..+ ..+|.+.
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~-~~~~~l~ 92 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG-PGWIGLT 92 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC-CCcEEEE
Confidence 33466789999998 9854444433 22 55556666554233333334444444 2355443
No 237
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0033 Score=46.74 Aligned_cols=25 Identities=20% Similarity=0.574 Sum_probs=20.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVT 39 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~ 39 (107)
++.|.+|||+||.+..+++++++-.
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~ 412 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEK 412 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHH
Confidence 4558899999999999999887543
No 238
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.55 E-value=0.009 Score=37.08 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=38.0
Q ss_pred CChhHHHHHHHHHhc----C---CceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEeecHH
Q 033962 22 LCPFCVSVKELFQQL----G---VTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIGGCDS 82 (107)
Q Consensus 22 ~Cp~C~~a~~~l~~~----~---i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig~~~~ 82 (107)
.+|-+..+--+|.+. + +.+-.+|++.. +.++..+|..++|++ |-||+.++....
T Consensus 47 r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-------~~LA~~fgV~siPTLl~FkdGk~v~~i~G 109 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-------EAIGDRFGVFRFPATLVFTGGNYRGVLNG 109 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-------HHHHHHcCCccCCEEEEEECCEEEEEEeC
Confidence 567676655555443 3 44666677665 488999999999988 559998876643
No 239
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.031 Score=37.23 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=57.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALH 87 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~ 87 (107)
..+++.-+....|.-+|.+|...+++|+...+..... ...++.....+.+|++-+||..+..+..|..++
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~----w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA----WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc----hhhhcccCCCCCCCEEeECCEeeccHHHHHHHH
Confidence 4566666789999999999999999999999988642 345566677889999999999998888776654
No 240
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.38 E-value=0.0093 Score=34.05 Aligned_cols=29 Identities=31% Similarity=0.624 Sum_probs=21.3
Q ss_pred EEeCCChhHHHHHHHHHhcC------CceEEEEcC
Q 033962 18 FSKTLCPFCVSVKELFQQLG------VTFKAIELD 46 (107)
Q Consensus 18 y~~~~Cp~C~~a~~~l~~~~------i~~~~~~i~ 46 (107)
|+.+|||+|+.+...|.... +.+..+++.
T Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~ 73 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVD 73 (127)
T ss_pred EEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECC
Confidence 46999999999888886542 455666664
No 241
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.36 E-value=0.047 Score=33.27 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=12.6
Q ss_pred cEEEEE-eCCChhHHHHHHHH
Q 033962 14 SVVVFS-KTLCPFCVSVKELF 33 (107)
Q Consensus 14 ~v~~y~-~~~Cp~C~~a~~~l 33 (107)
-++.|+ ..|||.|.....-|
T Consensus 26 ~ll~f~~~~~cp~C~~~~~~l 46 (140)
T cd03017 26 VVLYFYPKDDTPGCTKEACDF 46 (140)
T ss_pred EEEEEeCCCCCCchHHHHHHH
Confidence 345566 58999998543333
No 242
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=96.33 E-value=0.013 Score=35.97 Aligned_cols=49 Identities=14% Similarity=0.387 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCceEEEEcCCCCCc----hHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 28 SVKELFQQLGVTFKAIELDKESDG----SDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 28 ~a~~~l~~~~i~~~~~~i~~~~~~----~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
.+..+|++.|+++..+++..++.. +.+. .+.+..|...+|.+++||+.+
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~-~~L~~~G~e~LPitlVdGeiv 83 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVN-QLLQTEGAEALPITLVDGEIV 83 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHH-HHHHHH-GGG-SEEEETTEEE
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHH-HHHHHcCcccCCEEEECCEEE
Confidence 667888999999999999998753 3333 444456888999999999866
No 243
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=96.31 E-value=0.0026 Score=43.69 Aligned_cols=75 Identities=12% Similarity=0.192 Sum_probs=61.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHHc
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~~ 89 (107)
..++|.-+..=++++++..+.+.+|+|+..+|+-- .++...+++.+.+....||++..|...|-+...|+++.+.
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~-~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLP-QGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCc-cccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 37888888888999999999999999999999763 2233344667777788899999999999999999988876
No 244
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.30 E-value=0.038 Score=30.66 Aligned_cols=55 Identities=18% Similarity=0.374 Sum_probs=45.1
Q ss_pred CChhHHHHHHHHHhcCCc---eEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-CCeEEeecHHHHHHH
Q 033962 22 LCPFCVSVKELFQQLGVT---FKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-GGKHIGGCDSTTALH 87 (107)
Q Consensus 22 ~Cp~C~~a~~~l~~~~i~---~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-~g~~ig~~~~~~~~~ 87 (107)
--|.|-.+..+|+-.+.+ |+.+...... .+....+|.+.. +|+.+.|+..|.+++
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~-----------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPW-----------LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCC-----------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 468999999999999998 7777666531 345678999999 999999999988765
No 245
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.30 E-value=0.025 Score=37.32 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=20.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-------CCceEEEEcC
Q 033962 15 VVVFSKTLCPFCVSVKELFQQL-------GVTFKAIELD 46 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~-------~i~~~~~~i~ 46 (107)
++.|+.+|||.|++-...|.++ |+.+.-++++
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 5569999999998655444432 4555455443
No 246
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.011 Score=42.63 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=38.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECC
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQL----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGG 74 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g 74 (107)
.-++.|..|||++|++...-+.+. .-......|+.+. ...+.+.++..++|++. ..|
T Consensus 49 ~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~-----~~~~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 49 PWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE-----HKDLCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred ceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh-----hHHHHHhcCCccCcEEEEEcCC
Confidence 347789999999999777766643 1123334444332 24778899999999984 355
No 247
>PLN02412 probable glutathione peroxidase
Probab=96.13 E-value=0.032 Score=35.69 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=14.7
Q ss_pred EEEEEeCCChhHHHHHHHHHh
Q 033962 15 VVVFSKTLCPFCVSVKELFQQ 35 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~ 35 (107)
++.|+.+|||.|++-...|.+
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~ 53 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNV 53 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHH
Confidence 455889999999964444433
No 248
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.07 E-value=0.031 Score=34.97 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=15.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHh
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQ 35 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~ 35 (107)
-++.|+.+||| |..-...|.+
T Consensus 25 vvl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 25 LLIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEEcCCCC-chHHHHHHHH
Confidence 34559999999 9976666654
No 249
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.95 E-value=0.033 Score=36.11 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=14.3
Q ss_pred EEEEeCCChhHHHHHHHHH
Q 033962 16 VVFSKTLCPFCVSVKELFQ 34 (107)
Q Consensus 16 ~~y~~~~Cp~C~~a~~~l~ 34 (107)
++|+.+|||.|..-...|.
T Consensus 46 v~n~atwCp~C~~e~p~l~ 64 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLV 64 (183)
T ss_pred EEEECCCCCchHHHHHHHH
Confidence 4579999999997555554
No 250
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.94 E-value=0.054 Score=32.18 Aligned_cols=34 Identities=32% Similarity=0.569 Sum_probs=20.2
Q ss_pred cEEEEEeC-CChhHHHHHHHHHh-------cCCceEEEEcCC
Q 033962 14 SVVVFSKT-LCPFCVSVKELFQQ-------LGVTFKAIELDK 47 (107)
Q Consensus 14 ~v~~y~~~-~Cp~C~~a~~~l~~-------~~i~~~~~~i~~ 47 (107)
.|+.|+.. |||.|.....-|.+ .++.+..+..+.
T Consensus 28 ~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~ 69 (124)
T PF00578_consen 28 VVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDD 69 (124)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS
T ss_pred EEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccc
Confidence 35556666 99999855544433 345555555544
No 251
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.91 E-value=0.077 Score=33.74 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=20.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----c---CCceEEEEcCC
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQ----L---GVTFKAIELDK 47 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~----~---~i~~~~~~i~~ 47 (107)
.|+.|+.+|||.|.....-|.+ + ++.+.-+.++.
T Consensus 28 ~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~ 68 (171)
T cd02969 28 LVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND 68 (171)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence 4566889999999854444433 2 34454555543
No 252
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.90 E-value=0.045 Score=37.19 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=21.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHh-------cCCceEEEEcC
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQ-------LGVTFKAIELD 46 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~-------~~i~~~~~~i~ 46 (107)
-|+.|+.+|||.|..-...|.+ .|+.+.-++.+
T Consensus 102 vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 102 LLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred EEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 3566999999999865544433 34555555553
No 253
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.019 Score=41.47 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=43.9
Q ss_pred HHHhhccCCcEEEEEeCCChhHHHHHHHHH---hcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeec
Q 033962 5 KAQETVSSNSVVVFSKTLCPFCVSVKELFQ---QLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGC 80 (107)
Q Consensus 5 ~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~---~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~ 80 (107)
.++.+-..-...-|.+-+|..|..+.+.|. -++-.....-|+- .-++++.. .-+...||++|.||+.+|.-
T Consensus 110 qik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdG----a~Fq~Eve-ar~IMaVPtvflnGe~fg~G 183 (520)
T COG3634 110 QIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDG----ALFQDEVE-ARNIMAVPTVFLNGEEFGQG 183 (520)
T ss_pred HHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecc----hhhHhHHH-hccceecceEEEcchhhccc
Confidence 344444555566677767777776666654 4444455555543 22333433 33789999999999988754
No 254
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.74 E-value=0.18 Score=30.11 Aligned_cols=66 Identities=23% Similarity=0.383 Sum_probs=44.2
Q ss_pred cCCcEEEEEe-CCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCC-ceeEEE--ECCeEEee
Q 033962 11 SSNSVVVFSK-TLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQK-TVPNVF--IGGKHIGG 79 (107)
Q Consensus 11 ~~~~v~~y~~-~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~-~vP~i~--i~g~~ig~ 79 (107)
...++++|-- .+||=+..|..-|.+. .+++.++|+-.+ ..+-.++++.+|.. .=|+++ -||+.+-.
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~---R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~~ 93 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEY---RPVSNAIAEDFGVKHESPQVILIKNGKVVWH 93 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGG---HHHHHHHHHHHT----SSEEEEEETTEEEEE
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeC---chhHHHHHHHhCCCcCCCcEEEEECCEEEEE
Confidence 3567888855 4599999888777653 288999999888 77778889999964 558774 48987743
No 255
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=95.72 E-value=0.064 Score=32.87 Aligned_cols=53 Identities=26% Similarity=0.381 Sum_probs=28.2
Q ss_pred EEEE-EeCCChhHHHHHHHHHh-------cCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 15 VVVF-SKTLCPFCVSVKELFQQ-------LGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 15 v~~y-~~~~Cp~C~~a~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
+++| ...|||.|+.-..-|.+ .++.+.-+..+.. ... ..+.+..+. .+|.+.-
T Consensus 27 vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~---~~~-~~~~~~~~~-~~p~~~D 87 (149)
T cd02970 27 VVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP---EKL-EAFDKGKFL-PFPVYAD 87 (149)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH---HHH-HHHHHhcCC-CCeEEEC
Confidence 4444 57899999975555544 3455544544432 222 234444443 4675543
No 256
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=95.63 E-value=0.052 Score=32.26 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=43.7
Q ss_pred EEEeCCChhHHHHHHHHHhcCC--ceEEEEcCCCCCchHHHHHHHhhcC-----CCceeEEEECCe-EEeecHHHHHHHH
Q 033962 17 VFSKTLCPFCVSVKELFQQLGV--TFKAIELDKESDGSDIQSALAEWTG-----QKTVPNVFIGGK-HIGGCDSTTALHR 88 (107)
Q Consensus 17 ~y~~~~Cp~C~~a~~~l~~~~i--~~~~~~i~~~~~~~~~~~~l~~~~~-----~~~vP~i~i~g~-~ig~~~~~~~~~~ 88 (107)
||....||.|.....++..... .+.++++...+.. .+.+..| ..+.-.+.-+|+ ...|.+.+.....
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQ-----ALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhh-----hHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHH
Confidence 4567899999999999999864 6788888544321 1111222 122223334776 8888888777665
Q ss_pred c
Q 033962 89 E 89 (107)
Q Consensus 89 ~ 89 (107)
.
T Consensus 76 ~ 76 (114)
T PF04134_consen 76 R 76 (114)
T ss_pred H
Confidence 4
No 257
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.62 E-value=0.046 Score=41.31 Aligned_cols=55 Identities=9% Similarity=0.187 Sum_probs=40.1
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 11 SSNSVVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 11 ~~~~v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
++..+.+|+.+.|++|..++.+|++. .|.++++|...+ +.+.+.++...+|.+.+
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~-------~~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE-------PESETLPKITKLPTVAL 425 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc-------hhhHhhcCCCcCCEEEE
Confidence 33356779889999999999999885 345666666554 24466778778898855
No 258
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=95.56 E-value=0.012 Score=39.78 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=40.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCc-------e--EE------EEcCCCCCchHHHHHHHhhcCCC--ceeEEEECCeEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVT-------F--KA------IELDKESDGSDIQSALAEWTGQK--TVPNVFIGGKHI 77 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~-------~--~~------~~i~~~~~~~~~~~~l~~~~~~~--~vP~i~i~g~~i 77 (107)
|.+|++.+|..|..+-.+|.++.-+ | .+ .|.-...+..+.+..+...++.. ..|+.++||+..
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr~~ 124 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGRVH 124 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeechhh
Confidence 6789999999999999999886322 1 11 22222233344445566666654 458999999744
No 259
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.43 E-value=0.029 Score=33.95 Aligned_cols=33 Identities=24% Similarity=0.690 Sum_probs=27.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceEEEEc
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIEL 45 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i 45 (107)
..+++|+.|-|+-|+-+..+|.++.-+|+..-|
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEE
Confidence 457899999999999999999988777765444
No 260
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.37 E-value=0.12 Score=31.75 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=21.0
Q ss_pred cCCcEEEEEeCC-ChhHHHHHHHHHhc-----CCceEEEEcC
Q 033962 11 SSNSVVVFSKTL-CPFCVSVKELFQQL-----GVTFKAIELD 46 (107)
Q Consensus 11 ~~~~v~~y~~~~-Cp~C~~a~~~l~~~-----~i~~~~~~i~ 46 (107)
....|+.|+..| ||.|..-..-|.++ ++.+.-+.++
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d 67 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISAD 67 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 333455567767 79999766666432 4444445444
No 261
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.07 E-value=0.077 Score=35.06 Aligned_cols=90 Identities=23% Similarity=0.283 Sum_probs=54.4
Q ss_pred HHhhccCCcEE-EEEeCCChhHHHH---HHHHHhcCCc--eEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCe--
Q 033962 6 AQETVSSNSVV-VFSKTLCPFCVSV---KELFQQLGVT--FKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGK-- 75 (107)
Q Consensus 6 ~~~~~~~~~v~-~y~~~~Cp~C~~a---~~~l~~~~i~--~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~-- 75 (107)
+....++.+|+ -|..+.---|+.+ ...|....+. |..+|....| .+..+.++..+|++ |.||.
T Consensus 78 ~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~P-------Flv~kL~IkVLP~v~l~k~g~~~ 150 (211)
T KOG1672|consen 78 FEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAP-------FLVTKLNIKVLPTVALFKNGKTV 150 (211)
T ss_pred HHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCc-------eeeeeeeeeEeeeEEEEEcCEEE
Confidence 33344455554 4777765556544 4444455554 4445544443 77888999999988 67885
Q ss_pred -EEeecHHHH--HHHHcCCcHHHHHhcCcc
Q 033962 76 -HIGGCDSTT--ALHREGKLVPLLTEAGAV 102 (107)
Q Consensus 76 -~ig~~~~~~--~~~~~~~l~~~L~~~~~~ 102 (107)
++.||+++- .-++...|+..|...|.+
T Consensus 151 D~iVGF~dLGnkDdF~te~LE~rL~~S~vi 180 (211)
T KOG1672|consen 151 DYVVGFTDLGNKDDFTTETLENRLAKSGVI 180 (211)
T ss_pred EEEeeHhhcCCCCcCcHHHHHHHHhhccce
Confidence 566676652 233345677777777643
No 262
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=95.06 E-value=0.18 Score=30.60 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=19.4
Q ss_pred cEEEEE-eCCChhHHHHHHHHHh-------cCCceEEEEcC
Q 033962 14 SVVVFS-KTLCPFCVSVKELFQQ-------LGVTFKAIELD 46 (107)
Q Consensus 14 ~v~~y~-~~~Cp~C~~a~~~l~~-------~~i~~~~~~i~ 46 (107)
.+++|+ ..|||.|.....-|.+ .++.+..+..+
T Consensus 25 ~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 25 VVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345556 6799999865444433 35555555544
No 263
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=95.06 E-value=0.21 Score=30.66 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=13.8
Q ss_pred EEEEE-eCCChhHHHHHHHHHh
Q 033962 15 VVVFS-KTLCPFCVSVKELFQQ 35 (107)
Q Consensus 15 v~~y~-~~~Cp~C~~a~~~l~~ 35 (107)
|++|+ .+|||.|.+...-|.+
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHH
Confidence 44454 7899999865544443
No 264
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.85 E-value=0.0055 Score=41.40 Aligned_cols=62 Identities=16% Similarity=0.441 Sum_probs=43.9
Q ss_pred hhccCCcEEEEEeCCChhHHHHHHHHHhc-------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECCeE
Q 033962 8 ETVSSNSVVVFSKTLCPFCVSVKELFQQL-------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGGKH 76 (107)
Q Consensus 8 ~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g~~ 76 (107)
..++..-++.|+.+|||.|......+... ++..-++|+...+ .|.-++-...+|+|+ .+|.+
T Consensus 36 ~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np-------gLsGRF~vtaLptIYHvkDGeF 106 (248)
T KOG0913|consen 36 ELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP-------GLSGRFLVTALPTIYHVKDGEF 106 (248)
T ss_pred hhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc-------ccceeeEEEecceEEEeecccc
Confidence 34444456788999999999999888764 5667888988875 333344456789995 36753
No 265
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=94.82 E-value=0.033 Score=34.90 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=14.5
Q ss_pred EEEEEeCCChhHHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELF 33 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l 33 (107)
++.|+.+|||+|.....-|
T Consensus 26 vv~~~as~C~~c~~~~~~l 44 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRAL 44 (153)
T ss_pred EEEEeCCCCCchhhhHHHH
Confidence 5679999999998655433
No 266
>PRK13190 putative peroxiredoxin; Provisional
Probab=94.73 E-value=0.077 Score=35.01 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=18.6
Q ss_pred EEeCCChhHHHHHHHHH-------hcCCceEEEEcCC
Q 033962 18 FSKTLCPFCVSVKELFQ-------QLGVTFKAIELDK 47 (107)
Q Consensus 18 y~~~~Cp~C~~a~~~l~-------~~~i~~~~~~i~~ 47 (107)
|..+|||.|..-..-|. +.++.+.-+.++.
T Consensus 35 ~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~ 71 (202)
T PRK13190 35 HPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDS 71 (202)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 67899999985444443 3455555555443
No 267
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=94.66 E-value=0.099 Score=33.40 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=19.7
Q ss_pred EEEEE-eCCChhHHHHHHHHHh-------cCCceEEEEcCC
Q 033962 15 VVVFS-KTLCPFCVSVKELFQQ-------LGVTFKAIELDK 47 (107)
Q Consensus 15 v~~y~-~~~Cp~C~~a~~~l~~-------~~i~~~~~~i~~ 47 (107)
|+.|+ ..|||.|......|.+ .++.+..+.++.
T Consensus 33 vl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 33 VLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 44455 6899999975555533 355555554443
No 268
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.11 Score=37.52 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=35.9
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF 71 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~ 71 (107)
...++.|..|||++|+....-+++. +..+....++.. ....+....+....|++.
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~-----~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT-----VHKSLASRLEVRGYPTLK 223 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc-----hHHHHhhhhcccCCceEE
Confidence 3347778899999999775555443 233444444433 234667778888899883
No 269
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=94.63 E-value=0.11 Score=33.88 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=19.5
Q ss_pred EEEEE-eCCChhHHHHHHHH-------HhcCCceEEEEcCC
Q 033962 15 VVVFS-KTLCPFCVSVKELF-------QQLGVTFKAIELDK 47 (107)
Q Consensus 15 v~~y~-~~~Cp~C~~a~~~l-------~~~~i~~~~~~i~~ 47 (107)
|+.|+ ..|||.|..-..-| .+.++.+.-+.++.
T Consensus 35 vl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 35 VFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred EEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 34455 68999999644444 33466555555443
No 270
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.24 E-value=0.25 Score=29.73 Aligned_cols=47 Identities=15% Similarity=0.578 Sum_probs=33.5
Q ss_pred CChhHHHHHHHHHhc-----CCceEEEEcCCCCCchHHHHHHHhhcC--CCceeEEEECC
Q 033962 22 LCPFCVSVKELFQQL-----GVTFKAIELDKESDGSDIQSALAEWTG--QKTVPNVFIGG 74 (107)
Q Consensus 22 ~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~l~~~~~--~~~vP~i~i~g 74 (107)
-||+|..+.-+|... .+++..++...- +..+....| ..+.|+++.++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP------R~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP------RQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc------hHHHHHHhChhccCCCEEEeCC
Confidence 499999999999875 556666666553 335555555 57899998754
No 271
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=94.21 E-value=0.19 Score=32.01 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=15.1
Q ss_pred cEEEEEeCC-ChhHHHHHHHHHh
Q 033962 14 SVVVFSKTL-CPFCVSVKELFQQ 35 (107)
Q Consensus 14 ~v~~y~~~~-Cp~C~~a~~~l~~ 35 (107)
.|+.|+.+| ||.|..-..-|.+
T Consensus 47 vvl~f~~s~~cp~C~~e~~~l~~ 69 (167)
T PRK00522 47 KVLNIFPSIDTGVCATSVRKFNQ 69 (167)
T ss_pred EEEEEEcCCCCCccHHHHHHHHH
Confidence 355677778 9999965555544
No 272
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.27 Score=38.08 Aligned_cols=67 Identities=25% Similarity=0.497 Sum_probs=40.5
Q ss_pred cCCcEEE-EEeCCChhHH-HHHHHHHh------cCCceEEEEcCCC--CCchHHHH-HHHhhcCCCceeEE-EE--CCeE
Q 033962 11 SSNSVVV-FSKTLCPFCV-SVKELFQQ------LGVTFKAIELDKE--SDGSDIQS-ALAEWTGQKTVPNV-FI--GGKH 76 (107)
Q Consensus 11 ~~~~v~~-y~~~~Cp~C~-~a~~~l~~------~~i~~~~~~i~~~--~~~~~~~~-~l~~~~~~~~vP~i-~i--~g~~ 76 (107)
..++|.+ .+++||.+|+ +++.-+.+ +|-.|.-|.||.+ |+-..+.. ..+..+|..+.|.. |+ +|++
T Consensus 42 edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kP 121 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKP 121 (667)
T ss_pred hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCce
Confidence 4556666 6789999998 44444433 3445766777665 44344433 33445678899965 33 6664
Q ss_pred E
Q 033962 77 I 77 (107)
Q Consensus 77 i 77 (107)
+
T Consensus 122 F 122 (667)
T COG1331 122 F 122 (667)
T ss_pred e
Confidence 4
No 273
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.38 E-value=0.1 Score=34.51 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.2
Q ss_pred hhcCCCceeEEEECCeEEeecHH
Q 033962 60 EWTGQKTVPNVFIGGKHIGGCDS 82 (107)
Q Consensus 60 ~~~~~~~vP~i~i~g~~ig~~~~ 82 (107)
+..|..++|+++|||+++-+...
T Consensus 161 ~~~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 161 ADLQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHcCCCCCCEEEECCEEEEcccc
Confidence 45688999999999998765443
No 274
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=93.35 E-value=0.19 Score=33.09 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEeCCChhHHHHHHHH-------HhcCCceEEEEcCC
Q 033962 17 VFSKTLCPFCVSVKELF-------QQLGVTFKAIELDK 47 (107)
Q Consensus 17 ~y~~~~Cp~C~~a~~~l-------~~~~i~~~~~~i~~ 47 (107)
.|..+|||.|..-..-| ++.|+.+.-+.++.
T Consensus 32 ~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 32 SHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 36779999998544333 44566666666654
No 275
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.84 E-value=0.037 Score=41.89 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=37.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCc---------eEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVT---------FKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~---------~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
.++-|..+||++|+.....+++.... ..-+|--.. .-..+.+.++++.+|++..
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~-----~N~~lCRef~V~~~Ptlry 122 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE-----ENVKLCREFSVSGYPTLRY 122 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch-----hhhhhHhhcCCCCCceeee
Confidence 35567789999999888888776432 233444333 3347788899999999943
No 276
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.07 Score=36.01 Aligned_cols=63 Identities=21% Similarity=0.459 Sum_probs=42.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC-------ceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEe
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGV-------TFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIG 78 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i-------~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig 78 (107)
++-|.+-|.|.|++..+.+.++.+ .|-.+||...++..+.. .+....+.+.+|++ |-+|+.+.
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kf-ris~s~~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKF-RISLSPGSRQLPTYILFQKGKEVS 219 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHhe-eeccCcccccCCeEEEEccchhhh
Confidence 455778899999999888887644 46789999986542221 22222346788977 55787553
No 277
>PRK13599 putative peroxiredoxin; Provisional
Probab=92.81 E-value=0.26 Score=32.98 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=18.9
Q ss_pred EEEeCCChhHHHHHHHH-------HhcCCceEEEEcCC
Q 033962 17 VFSKTLCPFCVSVKELF-------QQLGVTFKAIELDK 47 (107)
Q Consensus 17 ~y~~~~Cp~C~~a~~~l-------~~~~i~~~~~~i~~ 47 (107)
.|...|||.|..-...| .+.|+.+.-+.+|.
T Consensus 35 ~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 35 SHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46779999998643333 33455555555554
No 278
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=92.68 E-value=0.41 Score=29.77 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=10.1
Q ss_pred cEEEEEe-CCChhHHHH
Q 033962 14 SVVVFSK-TLCPFCVSV 29 (107)
Q Consensus 14 ~v~~y~~-~~Cp~C~~a 29 (107)
-++.|+. .|||.|...
T Consensus 33 ~ll~f~~~~~~p~C~~~ 49 (154)
T PRK09437 33 VLVYFYPKAMTPGCTVQ 49 (154)
T ss_pred EEEEEECCCCCCchHHH
Confidence 3445664 478999743
No 279
>PRK13189 peroxiredoxin; Provisional
Probab=92.55 E-value=0.32 Score=32.63 Aligned_cols=31 Identities=16% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEeCCChhHHHHHHHH-------HhcCCceEEEEcCC
Q 033962 17 VFSKTLCPFCVSVKELF-------QQLGVTFKAIELDK 47 (107)
Q Consensus 17 ~y~~~~Cp~C~~a~~~l-------~~~~i~~~~~~i~~ 47 (107)
.|..+|||.|..-...| .+.++.+.-+.+|.
T Consensus 42 f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 42 SHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 46779999998533333 34466555555554
No 280
>PRK13191 putative peroxiredoxin; Provisional
Probab=91.40 E-value=0.51 Score=31.54 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=20.8
Q ss_pred EEEeCCChhHHHHHHHHH-------hcCCceEEEEcCCC
Q 033962 17 VFSKTLCPFCVSVKELFQ-------QLGVTFKAIELDKE 48 (107)
Q Consensus 17 ~y~~~~Cp~C~~a~~~l~-------~~~i~~~~~~i~~~ 48 (107)
.|..+|||.|..-...|. +.|+.+.-+.+|..
T Consensus 40 f~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~ 78 (215)
T PRK13191 40 SHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN 78 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 467799999986554443 34666666666554
No 281
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.17 E-value=0.72 Score=31.23 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=17.8
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQL 36 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~ 36 (107)
..|.+|+..-||+|-.-++-|++.
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHH
Confidence 357889999999997555555543
No 282
>PRK15000 peroxidase; Provisional
Probab=90.86 E-value=0.93 Score=29.89 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=19.2
Q ss_pred CCcEEEEEeC--CChhHHHHHHHHHh-------cCCceEEEEcC
Q 033962 12 SNSVVVFSKT--LCPFCVSVKELFQQ-------LGVTFKAIELD 46 (107)
Q Consensus 12 ~~~v~~y~~~--~Cp~C~~a~~~l~~-------~~i~~~~~~i~ 46 (107)
.+.+++|..+ |||.|..-..-|.+ .++.+.-+.+|
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D 77 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD 77 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 4445554444 89999865444433 35444444444
No 283
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.63 E-value=0.77 Score=34.20 Aligned_cols=66 Identities=21% Similarity=0.422 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHHhc--CC-ceEEEEcCCCCCchHHHHHHH---hhcCC--CceeEEEE-------CCeEEeecHHHHH
Q 033962 21 TLCPFCVSVKELFQQL--GV-TFKAIELDKESDGSDIQSALA---EWTGQ--KTVPNVFI-------GGKHIGGCDSTTA 85 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~--~i-~~~~~~i~~~~~~~~~~~~l~---~~~~~--~~vP~i~i-------~g~~ig~~~~~~~ 85 (107)
..|||=.++.-+-+++ ++ +|....|..+| .++.++|. ...|+ ..=|.|.- .|..+||+++..+
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p--~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e 79 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHP--DEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLE 79 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCCh--HHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHH
Confidence 5799999999888876 44 48999999987 44444444 44553 56798843 4579999998877
Q ss_pred HHH
Q 033962 86 LHR 88 (107)
Q Consensus 86 ~~~ 88 (107)
+..
T Consensus 80 ~~~ 82 (452)
T cd05295 80 YAE 82 (452)
T ss_pred HHH
Confidence 653
No 284
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=90.56 E-value=0.33 Score=31.06 Aligned_cols=33 Identities=15% Similarity=0.427 Sum_probs=23.6
Q ss_pred cEEEEEeCCChhHHHHHHHHH----hc-CCceEEEEcC
Q 033962 14 SVVVFSKTLCPFCVSVKELFQ----QL-GVTFKAIELD 46 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~----~~-~i~~~~~~i~ 46 (107)
+|++|+...||+|-.+...|. .. ++.++.+-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 488999999999986655554 44 6766665554
No 285
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=90.49 E-value=2.2 Score=27.82 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=13.3
Q ss_pred cCCcEEEEEeCCChhHHH
Q 033962 11 SSNSVVVFSKTLCPFCVS 28 (107)
Q Consensus 11 ~~~~v~~y~~~~Cp~C~~ 28 (107)
...-+++|+++||++|..
T Consensus 25 GKvvLVvf~AS~C~~~~q 42 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ 42 (183)
T ss_pred CCEEEEEEEeCCCCCcHH
Confidence 333456799999999974
No 286
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=90.14 E-value=0.79 Score=29.98 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=12.1
Q ss_pred EEEEE-eCCChhHHHHHHHH
Q 033962 15 VVVFS-KTLCPFCVSVKELF 33 (107)
Q Consensus 15 v~~y~-~~~Cp~C~~a~~~l 33 (107)
|+.|+ ..|||.|..-...|
T Consensus 35 vL~F~P~~~~p~C~~el~~l 54 (187)
T PRK10382 35 VFFFYPADFTFVCPTELGDV 54 (187)
T ss_pred EEEEECCCCCCcCHHHHHHH
Confidence 33344 68999998644333
No 287
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=89.81 E-value=1.2 Score=27.63 Aligned_cols=53 Identities=21% Similarity=0.474 Sum_probs=37.4
Q ss_pred EEeCCChhHHHHHHHHHhcCC---c---eEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEE
Q 033962 18 FSKTLCPFCVSVKELFQQLGV---T---FKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHI 77 (107)
Q Consensus 18 y~~~~Cp~C~~a~~~l~~~~i---~---~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~i 77 (107)
|+.+|-|.|-+.-.+|.+... . .-.+|+++. +.+-+.++....|++ |.|++++
T Consensus 30 FGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV-------~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 30 FGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV-------PDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred ecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh-------hhhhhhhcccCCceEEEEEcCceE
Confidence 999999999999999987532 2 345677655 245566676667765 6677765
No 288
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=89.73 E-value=0.62 Score=29.80 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=20.6
Q ss_pred hhcCCCceeEEEECCeEEeecHHHH
Q 033962 60 EWTGQKTVPNVFIGGKHIGGCDSTT 84 (107)
Q Consensus 60 ~~~~~~~vP~i~i~g~~ig~~~~~~ 84 (107)
...|..++|++++||+.+-|.+.+.
T Consensus 161 ~~~gi~gvPtfvv~g~~~~G~~~l~ 185 (192)
T cd03022 161 IARGVFGVPTFVVDGEMFWGQDRLD 185 (192)
T ss_pred HHcCCCcCCeEEECCeeecccccHH
Confidence 4468999999999999988877654
No 289
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=89.49 E-value=0.65 Score=31.41 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=53.7
Q ss_pred EEeCCChhHHHHHHHHHhcCCce---EEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECCeEEeecHHHHH----HHH
Q 033962 18 FSKTLCPFCVSVKELFQQLGVTF---KAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGGKHIGGCDSTTA----LHR 88 (107)
Q Consensus 18 y~~~~Cp~C~~a~~~l~~~~i~~---~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g~~ig~~~~~~~----~~~ 88 (107)
...++-+-|..+...+.=+..+| .+..+..... ....++....+|++. -||+.||.|-.+.+ -+-
T Consensus 166 IYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~------gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlgedff 239 (273)
T KOG3171|consen 166 IYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT------GASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFF 239 (273)
T ss_pred EecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc------cchhhhcccCCceEEEeeCCchhHHHHHHHHHHhhhhh
Confidence 34577888888777777666555 3444444321 223344567899884 49999999865543 345
Q ss_pred cCCcHHHHHhcCcccc
Q 033962 89 EGKLVPLLTEAGAVAK 104 (107)
Q Consensus 89 ~~~l~~~L~~~~~~~~ 104 (107)
.+.|.++|..-|++--
T Consensus 240 a~dle~FL~e~gllpe 255 (273)
T KOG3171|consen 240 AGDLESFLNEYGLLPE 255 (273)
T ss_pred hhhHHHHHHHcCCCcc
Confidence 7889999999888643
No 290
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=89.09 E-value=2.5 Score=28.95 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=42.5
Q ss_pred hHHHhhccCCcEEEEEeC-----CChhHHHHHHHHHhc------CCceEEEEcCCCCCchHHHHHHHhhcCCCcee
Q 033962 4 PKAQETVSSNSVVVFSKT-----LCPFCVSVKELFQQL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVP 68 (107)
Q Consensus 4 ~~~~~~~~~~~v~~y~~~-----~Cp~C~~a~~~l~~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP 68 (107)
..++.+-.+..|++|..+ .-++=..++.+|+++ ++.++++|.+.. +...+..+...|...++
T Consensus 18 ~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~---~~~~~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 18 KVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDEN---PSEAEEKAKEYGIQPVQ 90 (271)
T ss_pred HHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCC---hHHHHHHHHhcCCCccc
Confidence 455666666678888776 456777899999886 688899998666 34444555666765544
No 291
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=88.32 E-value=0.32 Score=32.07 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=16.2
Q ss_pred CCcEEEEEeCCChhHHHHHH
Q 033962 12 SNSVVVFSKTLCPFCVSVKE 31 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~ 31 (107)
...|+.|....||+|.+...
T Consensus 38 ~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCeEEEEeCCCCccHHHhcc
Confidence 34588899999999998654
No 292
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=2.8 Score=28.04 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=24.4
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCC
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDK 47 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~ 47 (107)
...+++|....||+|.+...-+.+. ++.+.++++--
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~~f 125 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREFPF 125 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEeec
Confidence 4567889999999998777766653 33455555533
No 293
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=87.57 E-value=2.6 Score=29.20 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=21.3
Q ss_pred cCCcEEEE--EeCCChhHHHHHHHH-------HhcCCceEEEEcCC
Q 033962 11 SSNSVVVF--SKTLCPFCVSVKELF-------QQLGVTFKAIELDK 47 (107)
Q Consensus 11 ~~~~v~~y--~~~~Cp~C~~a~~~l-------~~~~i~~~~~~i~~ 47 (107)
+...+++| ...|||.|..-...| .+.|+.+.-+.+|.
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 44455554 358999998633333 33455555555544
No 294
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=86.89 E-value=3.3 Score=26.59 Aligned_cols=50 Identities=30% Similarity=0.535 Sum_probs=28.5
Q ss_pred cEEEEEeCCCh-hHHHH-------HHHHHhcC--CceEEEEcCCCCCchHHHHHHHhhcC
Q 033962 14 SVVVFSKTLCP-FCVSV-------KELFQQLG--VTFKAIELDKESDGSDIQSALAEWTG 63 (107)
Q Consensus 14 ~v~~y~~~~Cp-~C~~a-------~~~l~~~~--i~~~~~~i~~~~~~~~~~~~l~~~~~ 63 (107)
.++.|+...|| -|... ..-|.+.+ +.+..+.+|...+.++..+.+.+..+
T Consensus 55 ~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~ 114 (174)
T PF02630_consen 55 VLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFG 114 (174)
T ss_dssp EEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHT
T ss_pred EEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcC
Confidence 36668899997 67632 33333333 44566666766566666666666555
No 295
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=86.35 E-value=3 Score=24.02 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=44.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----c---CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-----CCeEEeecH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQ----L---GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-----GGKHIGGCD 81 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~----~---~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-----~g~~ig~~~ 81 (107)
.+.+|....-|.++++..-+++ . .+..+.+|+..+| ++++....-..|+++- --+.||+.+
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP-------~lAE~~~IvATPtLIK~~P~P~rriiGdls 77 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNP-------QLAEEDKILATPTLSKILPPPVRKIIGDLS 77 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCH-------hHHhHCCEEEecHHhhcCCCCcceeecccc
Confidence 3578988888988865554443 2 2344789998885 5677777778888743 236788888
Q ss_pred HHHH
Q 033962 82 STTA 85 (107)
Q Consensus 82 ~~~~ 85 (107)
+..+
T Consensus 78 ~~~~ 81 (87)
T TIGR02654 78 DRER 81 (87)
T ss_pred chHH
Confidence 7654
No 296
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=86.26 E-value=3.1 Score=25.40 Aligned_cols=48 Identities=21% Similarity=0.455 Sum_probs=30.3
Q ss_pred CChhHH-----------HHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 22 LCPFCV-----------SVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 22 ~Cp~C~-----------~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
+|+-|. .++..|...|+...+..+...+ .++...+ -.-|.|.+||+.+
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~------~~~~~~~--~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDE------EEFARQP--LESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECCh------HHHhhcc--cCCCeeeECCEeh
Confidence 899997 4555566778875444443332 1333322 5678999999876
No 297
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=86.15 E-value=1.6 Score=27.89 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=20.5
Q ss_pred HhhcCCCceeEEEECCe-EEeecHHHH
Q 033962 59 AEWTGQKTVPNVFIGGK-HIGGCDSTT 84 (107)
Q Consensus 59 ~~~~~~~~vP~i~i~g~-~ig~~~~~~ 84 (107)
....|..++|++++||+ .+-|.+.+.
T Consensus 160 a~~~gv~GvP~~vv~g~~~~~G~~~~~ 186 (193)
T PF01323_consen 160 ARQLGVFGVPTFVVNGKYRFFGADRLD 186 (193)
T ss_dssp HHHTTCSSSSEEEETTTEEEESCSSHH
T ss_pred HHHcCCcccCEEEECCEEEEECCCCHH
Confidence 34568999999999999 777776554
No 298
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=85.74 E-value=2.1 Score=28.02 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=18.9
Q ss_pred EEEEE-eCCChhHHHHHHHH-------HhcCCceEEEEcCCC
Q 033962 15 VVVFS-KTLCPFCVSVKELF-------QQLGVTFKAIELDKE 48 (107)
Q Consensus 15 v~~y~-~~~Cp~C~~a~~~l-------~~~~i~~~~~~i~~~ 48 (107)
+++|+ ..|||.|.....-| .+.|+.+.-+.++..
T Consensus 40 lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 40 VLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred EEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 34444 25677777433333 345777766666644
No 299
>PRK09301 circadian clock protein KaiB; Provisional
Probab=85.72 E-value=3.2 Score=24.70 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=45.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-----CCeEEeecH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL-------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-----GGKHIGGCD 81 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-----~g~~ig~~~ 81 (107)
.+.+|....-|.++++..-+++. .+..+.+|+..+| ++++....-.+|+++- --+.||+.+
T Consensus 8 ~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qP-------elAE~~~IvATPTLIK~~P~P~rriiGDls 80 (103)
T PRK09301 8 ILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNP-------QLAEEDKILATPTLAKILPPPVRKIIGDLS 80 (103)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCH-------hHHhHCCeEEecHHhhcCCCCcceeecccc
Confidence 46789998899888665555432 2344789998885 5677777778888743 236889888
Q ss_pred HHHHH
Q 033962 82 STTAL 86 (107)
Q Consensus 82 ~~~~~ 86 (107)
+..+.
T Consensus 81 d~~kV 85 (103)
T PRK09301 81 DREKV 85 (103)
T ss_pred cHHHH
Confidence 76553
No 300
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=85.48 E-value=0.61 Score=29.89 Aligned_cols=21 Identities=24% Similarity=0.673 Sum_probs=16.8
Q ss_pred cEEEEEeCCChhHHHHHHHHH
Q 033962 14 SVVVFSKTLCPFCVSVKELFQ 34 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~ 34 (107)
+|.+|+.+.||+|-.+...|+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 478999999999986655554
No 301
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=85.04 E-value=7.3 Score=24.41 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=43.6
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCC--ceEEEEcCCCCCchHHHHHHHhhcCCC-cee--EEE-ECCeEEeecHHHH
Q 033962 11 SSNSVVVFSKTLCPFCVSVKELFQQLGV--TFKAIELDKESDGSDIQSALAEWTGQK-TVP--NVF-IGGKHIGGCDSTT 84 (107)
Q Consensus 11 ~~~~v~~y~~~~Cp~C~~a~~~l~~~~i--~~~~~~i~~~~~~~~~~~~l~~~~~~~-~vP--~i~-i~g~~ig~~~~~~ 84 (107)
+....+++..-.||.|-....+|.+..- .+.+.++...+. ..+....|.. .-+ .++ -+|+..-+++.+.
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g-----~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~ 80 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPG-----QALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAI 80 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchh-----hhHHhhcCCChhhhheeeEecCCceEeccHHHH
Confidence 3445666667899999999999987744 466667665432 2334444422 112 223 3778888888765
Q ss_pred H
Q 033962 85 A 85 (107)
Q Consensus 85 ~ 85 (107)
+
T Consensus 81 ~ 81 (137)
T COG3011 81 R 81 (137)
T ss_pred H
Confidence 5
No 302
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=83.61 E-value=2.5 Score=28.07 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=29.9
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHH
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDI 54 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~ 54 (107)
...+.+|....|+.|......+-.-+-++..+=|+..-+...+
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~I 151 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERI 151 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHH
Confidence 4468899999999999777766666667766666644333333
No 303
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=83.60 E-value=3.1 Score=23.11 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=34.2
Q ss_pred cEEEEEeCCChhHHHHH----HHHHhc---CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE
Q 033962 14 SVVVFSKTLCPFCVSVK----ELFQQL---GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF 71 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~----~~l~~~---~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~ 71 (107)
...+|....-|.+.++. .++++. .+..+.+|+..+| ++++....-.+|+++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P-------~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQP-------QLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCH-------hHHhhCCEEEechhh
Confidence 35788888878887554 444443 3345889999885 556666666777764
No 304
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=83.31 E-value=5.4 Score=25.25 Aligned_cols=32 Identities=19% Similarity=0.570 Sum_probs=22.4
Q ss_pred CCcEEEEEe-CCChhHHH-HHHHHHhcCCceEEE
Q 033962 12 SNSVVVFSK-TLCPFCVS-VKELFQQLGVTFKAI 43 (107)
Q Consensus 12 ~~~v~~y~~-~~Cp~C~~-a~~~l~~~~i~~~~~ 43 (107)
...+++|.. +-|++|+. +..+.++.|++.-.|
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I 132 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTI 132 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCeEEE
Confidence 556777755 89999995 445557789985433
No 305
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=83.22 E-value=7.7 Score=23.30 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=34.7
Q ss_pred hHHHhhccCCc-EEEE-EeC----CChhHH------HHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE-
Q 033962 4 PKAQETVSSNS-VVVF-SKT----LCPFCV------SVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV- 70 (107)
Q Consensus 4 ~~~~~~~~~~~-v~~y-~~~----~Cp~C~------~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i- 70 (107)
+.++...+..+ +.+| .++ ||.+|+ .+..++++ +.=.--.|+... +- ..+....+..++|.+
T Consensus 8 eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~-~fv~w~~dv~~~----eg-~~la~~l~~~~~P~~~ 81 (116)
T cd02991 8 QALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT-RMLFWACSVAKP----EG-YRVSQALRERTYPFLA 81 (116)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc-CEEEEEEecCCh----HH-HHHHHHhCCCCCCEEE
Confidence 34444444444 4444 445 788886 45556643 221223444433 11 366777888999988
Q ss_pred EE
Q 033962 71 FI 72 (107)
Q Consensus 71 ~i 72 (107)
++
T Consensus 82 ~l 83 (116)
T cd02991 82 MI 83 (116)
T ss_pred EE
Confidence 45
No 306
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=81.20 E-value=1.9 Score=25.76 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=42.0
Q ss_pred CcEEEEEeC---CChhHHHHHHHHHhcCC----ceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEEeecHHH
Q 033962 13 NSVVVFSKT---LCPFCVSVKELFQQLGV----TFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHIGGCDST 83 (107)
Q Consensus 13 ~~v~~y~~~---~Cp~C~~a~~~l~~~~i----~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~ig~~~~~ 83 (107)
...++|... .+|-+..+--+|-++-- .+...-+. .+....++.++|....|.+ |-+|+++|....+
T Consensus 27 ~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~-----~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 27 GDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA-----RAAERALAARFGVRRWPALVFFRDGRYLGAIEGI 101 (107)
T ss_dssp SCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE-----HHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESS
T ss_pred CcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC-----chhHHHHHHHhCCccCCeEEEEECCEEEEEecCe
Confidence 345566554 34555566656666432 22322222 3445688999999999987 4599999987765
Q ss_pred HHH
Q 033962 84 TAL 86 (107)
Q Consensus 84 ~~~ 86 (107)
+.+
T Consensus 102 ~dW 104 (107)
T PF07449_consen 102 RDW 104 (107)
T ss_dssp STH
T ss_pred ecc
Confidence 543
No 307
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=80.90 E-value=1.9 Score=27.56 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEEeCCChhHHHHHHHHHh----cCCceEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQ----LGVTFKA 42 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~----~~i~~~~ 42 (107)
|.+|+...||+|--+...|++ ++++++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~ 32 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRY 32 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEE
Confidence 468999999999876666654 4554443
No 308
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=80.72 E-value=5.9 Score=24.34 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=26.5
Q ss_pred CCcEEEEEeCCChhHH------------HHHHHHHhcCCceEEEEcCCC
Q 033962 12 SNSVVVFSKTLCPFCV------------SVKELFQQLGVTFKAIELDKE 48 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~------------~a~~~l~~~~i~~~~~~i~~~ 48 (107)
...|++.+......+. ....||++++++|..+-+...
T Consensus 40 G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~kp 88 (126)
T TIGR01689 40 GFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGKP 88 (126)
T ss_pred CCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCCC
Confidence 3446666655555555 788999999999988777764
No 309
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=80.70 E-value=3.3 Score=24.03 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=20.6
Q ss_pred hhccCCcEEEEEeCCChhHHHHHHHHHhc
Q 033962 8 ETVSSNSVVVFSKTLCPFCVSVKELFQQL 36 (107)
Q Consensus 8 ~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~ 36 (107)
++.++..+.+|..+. ++|..++.+|++.
T Consensus 16 ~l~~pV~l~~f~~~~-~~~~e~~~ll~e~ 43 (94)
T cd02974 16 RLENPVELVASLDDS-EKSAELLELLEEI 43 (94)
T ss_pred hCCCCEEEEEEeCCC-cchHHHHHHHHHH
Confidence 333444566687766 9999999999875
No 310
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=80.64 E-value=8.5 Score=25.57 Aligned_cols=41 Identities=37% Similarity=0.677 Sum_probs=23.5
Q ss_pred cEEEEEeCCCh-hHH----HHHHHHHhcC----Cce--EEEEcCCCCCchHH
Q 033962 14 SVVVFSKTLCP-FCV----SVKELFQQLG----VTF--KAIELDKESDGSDI 54 (107)
Q Consensus 14 ~v~~y~~~~Cp-~C~----~a~~~l~~~~----i~~--~~~~i~~~~~~~~~ 54 (107)
.++.|+...|| -|. ....+++..+ .++ ..+.+|...+.++.
T Consensus 70 ~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~ 121 (207)
T COG1999 70 SLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEV 121 (207)
T ss_pred EEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHH
Confidence 46678888888 565 3555555544 344 45555555444333
No 311
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=79.96 E-value=12 Score=23.43 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=27.9
Q ss_pred cCCcEEEEEe--CCChhHHHH-HH-------HHHhcCCc-eEEEEcCCCCCchHHHHHHHhhcCC-CceeEE
Q 033962 11 SSNSVVVFSK--TLCPFCVSV-KE-------LFQQLGVT-FKAIELDKESDGSDIQSALAEWTGQ-KTVPNV 70 (107)
Q Consensus 11 ~~~~v~~y~~--~~Cp~C~~a-~~-------~l~~~~i~-~~~~~i~~~~~~~~~~~~l~~~~~~-~~vP~i 70 (107)
...++++|.. .|||.|..- .. -|++.|+. +.-+..+.. ...+.+++..+. ..+|.+
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~----~~~~~~~~~~~~~~~f~lL 95 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP----FVMKAWGKALGAKDKIRFL 95 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH----HHHHHHHHhhCCCCcEEEE
Confidence 3345655544 689999864 22 33334552 444444443 334445555454 245544
No 312
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=79.86 E-value=5 Score=25.84 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=16.5
Q ss_pred hhcCCCceeEEEECCeE-EeecH
Q 033962 60 EWTGQKTVPNVFIGGKH-IGGCD 81 (107)
Q Consensus 60 ~~~~~~~vP~i~i~g~~-ig~~~ 81 (107)
...|..++|++++||++ +.|..
T Consensus 169 ~~~gv~G~Pt~vv~g~~~~~G~~ 191 (201)
T cd03024 169 RQLGISGVPFFVFNGKYAVSGAQ 191 (201)
T ss_pred HHCCCCcCCEEEECCeEeecCCC
Confidence 44688999999999874 45554
No 313
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=79.38 E-value=2.2 Score=25.29 Aligned_cols=15 Identities=40% Similarity=0.879 Sum_probs=13.6
Q ss_pred cEEEEEeCCChhHHH
Q 033962 14 SVVVFSKTLCPFCVS 28 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~ 28 (107)
+|.+|+.+-||+|++
T Consensus 2 ~v~vyyESlCPd~~~ 16 (108)
T PF03227_consen 2 NVEVYYESLCPDCRR 16 (108)
T ss_pred EEEEEEEecCHhHHH
Confidence 588999999999986
No 314
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.79 E-value=3.3 Score=27.72 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=19.8
Q ss_pred HHhhcCCCceeEEEECCeEEeecHH
Q 033962 58 LAEWTGQKTVPNVFIGGKHIGGCDS 82 (107)
Q Consensus 58 l~~~~~~~~vP~i~i~g~~ig~~~~ 82 (107)
+....|..++|++|++|..+.|...
T Consensus 207 ~a~~~gv~gTPt~~v~~~~~~g~~~ 231 (244)
T COG1651 207 LAQQLGVNGTPTFIVNGKLVPGLPD 231 (244)
T ss_pred HHHhcCCCcCCeEEECCeeecCCCC
Confidence 3455688999999999987777654
No 315
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=78.12 E-value=13 Score=22.83 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=19.8
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCceEEEE
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIE 44 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~ 44 (107)
...+.+++-+.-+. ..++.++++++++|..+.
T Consensus 62 ~~~v~vi~Is~d~~-~~~~~~~~~~~~~~~~l~ 93 (154)
T PRK09437 62 KAGVVVLGISTDKP-EKLSRFAEKELLNFTLLS 93 (154)
T ss_pred HCCCEEEEEcCCCH-HHHHHHHHHhCCCCeEEE
Confidence 33444443332232 677889999999887653
No 316
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=77.08 E-value=3.8 Score=21.77 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=28.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCe
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGK 75 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~ 75 (107)
+++|+...=.-+..++.+|++.||++...|-..... .-..|..+.+.|++...
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~--------~g~~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY--------AGEPGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS-----------S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh--------hcccCccCceEEEECHH
Confidence 467777777788999999999999998877665421 11134444477777553
No 317
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=77.05 E-value=15 Score=23.79 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=37.0
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCc------------eEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCe
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVT------------FKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGK 75 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~------------~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~ 75 (107)
..+.+=.++++..=..|+.+|+.+++. |...+|-..+. ....+.+.+.+|..---.+|++++
T Consensus 60 ~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK-~~Hf~~i~~~tgI~y~eMlFFDDe 133 (169)
T PF12689_consen 60 RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSK-TTHFRRIHRKTGIPYEEMLFFDDE 133 (169)
T ss_dssp CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-H-HHHHHHHHHHH---GGGEEEEES-
T ss_pred CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCch-HHHHHHHHHhcCCChhHEEEecCc
Confidence 455555555554448999999998887 45667766532 556778888888766668898886
No 318
>PLN02907 glutamate-tRNA ligase
Probab=76.12 E-value=18 Score=28.80 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=40.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-CCeEEeecHHHHHHHHc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-GGKHIGGCDSTTALHRE 89 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-~g~~ig~~~~~~~~~~~ 89 (107)
+++|+.+.-+.+ .+..+|...+++|+.++. .....+|++.. +|..+.++..|..++..
T Consensus 3 ~kLy~~~~S~~~-~v~~~L~~lgv~~e~~~~----------------~p~GkVPvLv~ddG~~L~ES~AIl~YLa~ 61 (722)
T PLN02907 3 AKLSFPPDSPPL-AVIAAAKVAGVPLTIDPS----------------LKSGSAPTLLFSSGEKLTGTNVLLRYIAR 61 (722)
T ss_pred EEEEECCCCChH-HHHHHHHHcCCCcEEeec----------------CCCCCCcEEEECCCCEEECHHHHHHHHHH
Confidence 567777543322 478889999999988651 13567999986 77788877777776544
No 319
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=72.76 E-value=13 Score=25.66 Aligned_cols=24 Identities=21% Similarity=0.574 Sum_probs=15.0
Q ss_pred EEEEEeCCChhHHHHH----HHHHhcCC
Q 033962 15 VVVFSKTLCPFCVSVK----ELFQQLGV 38 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~----~~l~~~~i 38 (107)
|.+.+..|||+|...+ ..|.+.|-
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcCC
Confidence 3444668999998433 44555553
No 320
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.65 E-value=9.3 Score=25.87 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=45.2
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHHHHH
Q 033962 21 TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHR 88 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~~~~ 88 (107)
+.-..|-.++.+|+=.++||.++--... ++ .+..+.+|.+-+|...+.++..|....+
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~Na--------ef--mSP~G~vPllr~g~~~~aef~pIV~fVe 89 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRANA--------EF--MSPGGKVPLLRIGKTLFAEFEPIVDFVE 89 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecCCc--------cc--cCCCCCCceeeecchhhhhhhHHHHHHH
Confidence 5678899999999999999987655443 12 2334589999999999999988877655
No 321
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=71.53 E-value=3.7 Score=26.42 Aligned_cols=20 Identities=25% Similarity=0.742 Sum_probs=15.2
Q ss_pred EEEEEeCCChhHHHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQ 34 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~ 34 (107)
|.+|+..-||+|--+..-|+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~ 20 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLE 20 (201)
T ss_pred CeEEecCcCccHHHHHHHHH
Confidence 46899999999985555553
No 322
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=71.44 E-value=21 Score=25.87 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=44.0
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCC--CchHHHHHHHhhcCCCceeEEEE---CCeEEeecHHHHH
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKES--DGSDIQSALAEWTGQKTVPNVFI---GGKHIGGCDSTTA 85 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~--~~~~~~~~l~~~~~~~~vP~i~i---~g~~ig~~~~~~~ 85 (107)
..+.++|....+.+|. .+..+-+|+....|.++.+- +..+..+.+.+....+.+|.+++ |....|.+|++.+
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~ 215 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEE 215 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHH
Confidence 3568889888899886 56666678887777777642 12345555555555667885543 4456677777654
No 323
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=70.95 E-value=17 Score=21.46 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=22.4
Q ss_pred CChhHH-HHHHHHHhcCCceEEEEcCC
Q 033962 22 LCPFCV-SVKELFQQLGVTFKAIELDK 47 (107)
Q Consensus 22 ~Cp~C~-~a~~~l~~~~i~~~~~~i~~ 47 (107)
.|-.|. .++.+|.+.+|+...+.+..
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 599886 67899999999998888877
No 324
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.90 E-value=7.2 Score=21.83 Aligned_cols=27 Identities=7% Similarity=0.252 Sum_probs=22.1
Q ss_pred CChhHHHHHHHHHhcCCceEEEEcCCC
Q 033962 22 LCPFCVSVKELFQQLGVTFKAIELDKE 48 (107)
Q Consensus 22 ~Cp~C~~a~~~l~~~~i~~~~~~i~~~ 48 (107)
-=++|+++-.+|++++++|+.+-...+
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSGID 40 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSGID 40 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCCCc
Confidence 347999999999999999987665544
No 325
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=70.73 E-value=24 Score=22.39 Aligned_cols=39 Identities=5% Similarity=0.175 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHH
Q 033962 21 TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALA 59 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~ 59 (107)
+.=+++++++..|+++|++|+..-+..+.......+.+.
T Consensus 11 SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~ 49 (150)
T PF00731_consen 11 SDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVK 49 (150)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHH
Confidence 456899999999999999999887787765444544433
No 326
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=70.50 E-value=7.4 Score=25.55 Aligned_cols=28 Identities=11% Similarity=0.288 Sum_probs=19.9
Q ss_pred cEEEEEeCCChhHHHHHHHHH----hcCCceE
Q 033962 14 SVVVFSKTLCPFCVSVKELFQ----QLGVTFK 41 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~----~~~i~~~ 41 (107)
+|-+|+..-||+|--+...|. ..+++++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~ 33 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDIT 33 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEE
Confidence 577999999999986655554 4555543
No 327
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=70.14 E-value=5.4 Score=25.71 Aligned_cols=20 Identities=25% Similarity=0.737 Sum_probs=14.7
Q ss_pred EEEeCCChhHHHHHHHHHhc
Q 033962 17 VFSKTLCPFCVSVKELFQQL 36 (107)
Q Consensus 17 ~y~~~~Cp~C~~a~~~l~~~ 36 (107)
+|+.|.|++|-...+.+.++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl 21 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKL 21 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHH
Confidence 68999999999877777654
No 328
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=69.57 E-value=5.3 Score=21.85 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=14.0
Q ss_pred CChhHH-HHHHHHHhcCC
Q 033962 22 LCPFCV-SVKELFQQLGV 38 (107)
Q Consensus 22 ~Cp~C~-~a~~~l~~~~i 38 (107)
=||.|+ .|+..+.+++|
T Consensus 17 PC~~Cr~HA~~ai~kNNi 34 (70)
T PF04805_consen 17 PCPECRIHAKEAIQKNNI 34 (70)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 499997 78888888765
No 329
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=68.98 E-value=10 Score=28.56 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=20.4
Q ss_pred hhccCCcEEEEEeCCChhHHHHHHHHHhc
Q 033962 8 ETVSSNSVVVFSKTLCPFCVSVKELFQQL 36 (107)
Q Consensus 8 ~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~ 36 (107)
++.++..+.+|.. .|++|..++.+|++.
T Consensus 16 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (515)
T TIGR03140 16 SLENPVTLVLSAG-SHEKSKELLELLDEI 43 (515)
T ss_pred hcCCCEEEEEEeC-CCchhHHHHHHHHHH
Confidence 3333444556766 699999999999876
No 330
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=66.53 E-value=32 Score=22.13 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=30.6
Q ss_pred EeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHH
Q 033962 19 SKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSA 57 (107)
Q Consensus 19 ~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~ 57 (107)
+.+.-+..+++...|++++++|+..=++.+...+...+.
T Consensus 11 S~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~y 49 (162)
T COG0041 11 SKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEY 49 (162)
T ss_pred CcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHH
Confidence 345668889999999999999999988888665544433
No 331
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=66.45 E-value=23 Score=21.26 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=32.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCc
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDG 51 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~ 51 (107)
+|.+++.++|.-..-++.+.+..+.++..+.+..+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~ 38 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTE 38 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccccc
Confidence 47899999999999999999999999999998887543
No 332
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=64.76 E-value=9.3 Score=28.76 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=21.3
Q ss_pred HhhccCCcEEEEEeCCChhHHHHHHHHHhc
Q 033962 7 QETVSSNSVVVFSKTLCPFCVSVKELFQQL 36 (107)
Q Consensus 7 ~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~ 36 (107)
.++.++..+++|.. .|++|..++.+|++.
T Consensus 15 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (517)
T PRK15317 15 ELLERPIELVASLD-DSEKSAELKELLEEI 43 (517)
T ss_pred HhCCCCEEEEEEeC-CCchHHHHHHHHHHH
Confidence 33334445666766 799999999999886
No 333
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=64.22 E-value=35 Score=21.85 Aligned_cols=41 Identities=7% Similarity=0.155 Sum_probs=31.5
Q ss_pred EeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHH
Q 033962 19 SKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALA 59 (107)
Q Consensus 19 ~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~ 59 (107)
+.+.=|+++++...|+++|++|+..=+..+.......+..+
T Consensus 7 S~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~ 47 (156)
T TIGR01162 7 SDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAK 47 (156)
T ss_pred cHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHH
Confidence 34566899999999999999998888888766555544433
No 334
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=62.89 E-value=40 Score=24.41 Aligned_cols=77 Identities=6% Similarity=-0.050 Sum_probs=49.6
Q ss_pred hhccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcC----------CCCCchHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 8 ETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELD----------KESDGSDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 8 ~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~----------~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
+++...-+-+|+-+.|..-..+..+++.+.|||.....+ ..|........+.+.+|++.+=.++-++.-+
T Consensus 58 ~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~~~Wr~~~~iYd~d~gl 137 (372)
T cd06387 58 SQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLAHYKWEKFVYLYDTERGF 137 (372)
T ss_pred HHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHHHhcCCCEEEEEecCchhH
Confidence 455566678899999999999999999999998654322 1222222233445567888887777555544
Q ss_pred eecHHHH
Q 033962 78 GGCDSTT 84 (107)
Q Consensus 78 g~~~~~~ 84 (107)
+...++.
T Consensus 138 ~~Lq~L~ 144 (372)
T cd06387 138 SILQAIM 144 (372)
T ss_pred HHHHHHH
Confidence 4444433
No 335
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=62.38 E-value=36 Score=21.25 Aligned_cols=54 Identities=19% Similarity=0.423 Sum_probs=34.6
Q ss_pred EEEEeCCChhHHHHHHHHHhcC-----C-ceEEEEcCCCCCchHHHHHHHhhcCCCceeE---EEECCeEE
Q 033962 16 VVFSKTLCPFCVSVKELFQQLG-----V-TFKAIELDKESDGSDIQSALAEWTGQKTVPN---VFIGGKHI 77 (107)
Q Consensus 16 ~~y~~~~Cp~C~~a~~~l~~~~-----i-~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~---i~i~g~~i 77 (107)
+=|+.+|-|.|.+.-.+|.+.. . .+-.+|++..++. .+.+... .|. +|.+++++
T Consensus 25 iRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdf-------n~~yel~-dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 25 IRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDF-------NQMYELY-DPCTVMFFFRNKHM 87 (133)
T ss_dssp EEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCC-------HHHTTS--SSEEEEEEETTEEE
T ss_pred EEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhh-------hcccccC-CCeEEEEEecCeEE
Confidence 3399999999999888887642 2 2356888877543 3344433 553 25588877
No 336
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=62.16 E-value=24 Score=22.36 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=24.9
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCc
Q 033962 11 SSNSVVVFSKTLCPFCVSVKELFQQLGVT 39 (107)
Q Consensus 11 ~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~ 39 (107)
...+|++|..++|..+..+...|...|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 45689999999999899999999998865
No 337
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=61.27 E-value=16 Score=22.09 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=17.6
Q ss_pred cCCCceeEEEECCeE-EeecHHHHH
Q 033962 62 TGQKTVPNVFIGGKH-IGGCDSTTA 85 (107)
Q Consensus 62 ~~~~~vP~i~i~g~~-ig~~~~~~~ 85 (107)
+|...+|.+++|+++ +-|..++.+
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~ 103 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVAR 103 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHH
Confidence 578999999998874 456665544
No 338
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=61.27 E-value=22 Score=20.69 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=29.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCC
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKE 48 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~ 48 (107)
|.+++.++|.-..-++.+.+..+.++..++....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccc
Confidence 5789999999999999999999988877777553
No 339
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.04 E-value=4.9 Score=27.28 Aligned_cols=58 Identities=16% Similarity=0.309 Sum_probs=36.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCce---EEEEcCCCCCchHHHHHHHhhcCCCceeEEE--ECCeEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTF---KAIELDKESDGSDIQSALAEWTGQKTVPNVF--IGGKHI 77 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~---~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~--i~g~~i 77 (107)
+..|+.+||..|..+..+++...-.+ ..+.++ .+..+++........+|.+. .+|+-+
T Consensus 21 ~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~-----a~~~~eis~~~~v~~vp~~~~~~~~~~v 83 (227)
T KOG0911|consen 21 VLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLE-----AEEFPEISNLIAVEAVPYFVFFFLGEKV 83 (227)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeeh-----hhhhhHHHHHHHHhcCceeeeeecchhh
Confidence 45588999999999999887764322 222222 22334667677778888773 355433
No 340
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=60.82 E-value=23 Score=18.58 Aligned_cols=17 Identities=6% Similarity=0.006 Sum_probs=9.4
Q ss_pred hHHHHHHHHHhcCCceE
Q 033962 25 FCVSVKELFQQLGVTFK 41 (107)
Q Consensus 25 ~C~~a~~~l~~~~i~~~ 41 (107)
....+..|++..|..+.
T Consensus 38 ~~~~i~~~~~~~g~~~~ 54 (69)
T cd00291 38 AVEDIPAWAKETGHEVL 54 (69)
T ss_pred HHHHHHHHHHHcCCEEE
Confidence 44555566665555543
No 341
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=59.70 E-value=32 Score=19.80 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHhcCCceEEEEcCC---------------CCCchHHHHHHHhhcCCCceeEEEECCeEEeecH
Q 033962 24 PFCVSVKELFQQLGVTFKAIELDK---------------ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCD 81 (107)
Q Consensus 24 p~C~~a~~~l~~~~i~~~~~~i~~---------------~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~ 81 (107)
-...+++.+++++|++++..-.+. .|+.....+.+++.....++|...++....|-.+
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~d 86 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMMN 86 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhcccCC
Confidence 456788888898888764433221 1222334556666566778999999888776543
No 342
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=58.97 E-value=39 Score=24.55 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=7.2
Q ss_pred CceeEEEECCeEE
Q 033962 65 KTVPNVFIGGKHI 77 (107)
Q Consensus 65 ~~vP~i~i~g~~i 77 (107)
.++|.+.+++.+-
T Consensus 342 ~GIP~L~iE~D~~ 354 (377)
T TIGR03190 342 NGIPTLFLEFDIT 354 (377)
T ss_pred CCCCEEEEecCCC
Confidence 4566666655543
No 343
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=58.80 E-value=43 Score=20.99 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=37.7
Q ss_pred ccCCcEEEEEeCCCh-------hHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEE-E--CCeEE
Q 033962 10 VSSNSVVVFSKTLCP-------FCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVF-I--GGKHI 77 (107)
Q Consensus 10 ~~~~~v~~y~~~~Cp-------~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~-i--~g~~i 77 (107)
.....+.+++-+..+ .=..++.++++.+++|..+- |.+ ..+.+.+|...+|.++ + +|+.+
T Consensus 54 ~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~-D~~-------~~~~~~~~v~~~P~~~lid~~G~v~ 123 (171)
T cd02969 54 YGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLL-DET-------QEVAKAYGAACTPDFFLFDPDGKLV 123 (171)
T ss_pred HhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEE-CCc-------hHHHHHcCCCcCCcEEEECCCCeEE
Confidence 333456666655443 23578888899999876553 222 2456677888899775 4 56554
No 344
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=58.21 E-value=9.6 Score=25.79 Aligned_cols=17 Identities=24% Similarity=0.743 Sum_probs=14.3
Q ss_pred CCcEEEEEeCCChhHHH
Q 033962 12 SNSVVVFSKTLCPFCVS 28 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~ 28 (107)
...|++|+.+-||+|.+
T Consensus 40 ~v~ItlyyEaLCPdc~~ 56 (220)
T KOG3160|consen 40 KVNITLYYEALCPDCSK 56 (220)
T ss_pred eeEEEEEEEecCccHHH
Confidence 34689999999999984
No 345
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=57.82 E-value=12 Score=20.06 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=11.8
Q ss_pred EEECCeEEeecHHHH
Q 033962 70 VFIGGKHIGGCDSTT 84 (107)
Q Consensus 70 i~i~g~~ig~~~~~~ 84 (107)
+|+||..+|-.++-.
T Consensus 1 VFlNG~~iG~~~~p~ 15 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPE 15 (63)
T ss_dssp EEETTEEEEEESSHH
T ss_pred CEECCEEEEEEcCHH
Confidence 699999999776543
No 346
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=57.54 E-value=17 Score=21.28 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCCceEEEEcCC---------------CCCchHHHHHHHhhcCCCceeEEEECCeEEe
Q 033962 25 FCVSVKELFQQLGVTFKAIELDK---------------ESDGSDIQSALAEWTGQKTVPNVFIGGKHIG 78 (107)
Q Consensus 25 ~C~~a~~~l~~~~i~~~~~~i~~---------------~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig 78 (107)
-..+++.+++++|++++..-... .|.-.-..+.+++..+..++|...++....|
T Consensus 16 la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 16 LANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHh
Confidence 34688889999998875422211 1222345566777777788999999876665
No 347
>PRK10670 hypothetical protein; Provisional
Probab=57.27 E-value=33 Score=21.71 Aligned_cols=45 Identities=7% Similarity=0.243 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCC---CceeEEEE
Q 033962 28 SVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ---KTVPNVFI 72 (107)
Q Consensus 28 ~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~---~~vP~i~i 72 (107)
.+..+|++.+++|+..+++-++......++.++..|. ..+.++++
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~~~~~~~~~~a~~lgv~~~~i~Ktlv~ 50 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDPAETNFGDEVVRKLGLNADQVYKTLLV 50 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCCcccchHHHHHHHhCCCHHHeEEEEEE
Confidence 4788999999999996665443221222344555553 34555544
No 348
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=57.09 E-value=36 Score=19.62 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=40.5
Q ss_pred CcEEEEEeCC---ChhHHHHHHHHHhcCCceEEEEcCCC---------------CCchHHHHHHHhhcCCCceeEEEECC
Q 033962 13 NSVVVFSKTL---CPFCVSVKELFQQLGVTFKAIELDKE---------------SDGSDIQSALAEWTGQKTVPNVFIGG 74 (107)
Q Consensus 13 ~~v~~y~~~~---Cp~C~~a~~~l~~~~i~~~~~~i~~~---------------~~~~~~~~~l~~~~~~~~vP~i~i~g 74 (107)
.+|.+.-..+ ---..+++.++++.|++++..-.... |.-....+++++..+..++|...++.
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeCh
Confidence 3455543332 23456889999999998754322210 22233455666666666788888887
Q ss_pred eEEeec
Q 033962 75 KHIGGC 80 (107)
Q Consensus 75 ~~ig~~ 80 (107)
...|..
T Consensus 84 ~~Y~~m 89 (95)
T TIGR00853 84 AQYGKL 89 (95)
T ss_pred hhcccC
Confidence 766544
No 349
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=56.50 E-value=80 Score=24.27 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=31.7
Q ss_pred hHHHhhccCCcEEEEEeCCCh-----hHHHHHHHHHhc-----CCceEEEEcCCCCC
Q 033962 4 PKAQETVSSNSVVVFSKTLCP-----FCVSVKELFQQL-----GVTFKAIELDKESD 50 (107)
Q Consensus 4 ~~~~~~~~~~~v~~y~~~~Cp-----~C~~a~~~l~~~-----~i~~~~~~i~~~~~ 50 (107)
..++.+-++..|++|..+.-| +=..++.+|+++ ++.++++|-..+++
T Consensus 41 ~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~ 97 (552)
T TIGR03521 41 EVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEED 97 (552)
T ss_pred HHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcch
Confidence 455566666677777765544 345788888875 57788888776643
No 350
>PHA03005 sulfhydryl oxidase; Provisional
Probab=56.15 E-value=12 Score=21.90 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=15.1
Q ss_pred EEeCCChhHH-HHHHHHHhcCC
Q 033962 18 FSKTLCPFCV-SVKELFQQLGV 38 (107)
Q Consensus 18 y~~~~Cp~C~-~a~~~l~~~~i 38 (107)
.+-| ||.|+ .|+..+.++++
T Consensus 39 ~tLP-C~~Cr~HA~~ai~knni 59 (96)
T PHA03005 39 STLP-CPACRRHAKEAIEKNNI 59 (96)
T ss_pred hcCC-CHHHHHHHHHHHhhcCc
Confidence 3445 99997 78888888765
No 351
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=56.10 E-value=27 Score=20.75 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=29.3
Q ss_pred CCcEEEEEe-CCChhHHHHHHHHHhcCCceEEEEcCCC
Q 033962 12 SNSVVVFSK-TLCPFCVSVKELFQQLGVTFKAIELDKE 48 (107)
Q Consensus 12 ~~~v~~y~~-~~Cp~C~~a~~~l~~~~i~~~~~~i~~~ 48 (107)
...+++++. +....|.+|...|++.|++...+|+..-
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i 46 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTI 46 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEE
Confidence 456777655 5668999999999999999988888553
No 352
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.01 E-value=37 Score=19.41 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=30.0
Q ss_pred HHHhhccCCcEEEEEeCCChh--HHHHHHHHHhcCCceEEEEc
Q 033962 5 KAQETVSSNSVVVFSKTLCPF--CVSVKELFQQLGVTFKAIEL 45 (107)
Q Consensus 5 ~~~~~~~~~~v~~y~~~~Cp~--C~~a~~~l~~~~i~~~~~~i 45 (107)
.+...+....++++.++.+.+ +..++...++.++|+.+.+-
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 366677777777777766654 56888888888888877653
No 353
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=55.11 E-value=54 Score=21.02 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=10.4
Q ss_pred CcEEEEEe--CCChhHH
Q 033962 13 NSVVVFSK--TLCPFCV 27 (107)
Q Consensus 13 ~~v~~y~~--~~Cp~C~ 27 (107)
.+|++|.+ .++|-|-
T Consensus 31 k~VVLyFYPk~~TpgCT 47 (157)
T COG1225 31 KPVVLYFYPKDFTPGCT 47 (157)
T ss_pred CcEEEEECCCCCCCcch
Confidence 47888776 4677775
No 354
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=55.03 E-value=77 Score=22.78 Aligned_cols=40 Identities=10% Similarity=0.242 Sum_probs=31.6
Q ss_pred hhHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCceEE
Q 033962 3 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKA 42 (107)
Q Consensus 3 ~~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~ 42 (107)
...+.+++...-+-+|+..+++.+..+..++.+.++|+..
T Consensus 52 ~~~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is 91 (363)
T cd06381 52 VQEACDLMNQGILALVTSTGCASAIALQSLTDAMHIPHLF 91 (363)
T ss_pred HHHHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEE
Confidence 3455566666556789989999999999999999998755
No 355
>PF15616 TerY-C: TerY-C metal binding domain
Probab=54.15 E-value=3.3 Score=25.74 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=11.0
Q ss_pred EEEeCCChhHHHHHH
Q 033962 17 VFSKTLCPFCVSVKE 31 (107)
Q Consensus 17 ~y~~~~Cp~C~~a~~ 31 (107)
+.+.|+||+|-....
T Consensus 74 L~g~PgCP~CGn~~~ 88 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYA 88 (131)
T ss_pred hcCCCCCCCCcChhc
Confidence 456699999976543
No 356
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=53.62 E-value=13 Score=22.45 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=17.2
Q ss_pred cCCCceeEEEECCeEE-eecHHHHH
Q 033962 62 TGQKTVPNVFIGGKHI-GGCDSTTA 85 (107)
Q Consensus 62 ~~~~~vP~i~i~g~~i-g~~~~~~~ 85 (107)
+|...+|.+++|++++ -|-.++..
T Consensus 80 lGi~k~PAVV~D~~~VVYG~~DV~~ 104 (113)
T TIGR03757 80 LGVTKIPAVVVDRRYVVYGETDVAR 104 (113)
T ss_pred cCCccCCEEEEcCCeEEecCccHHH
Confidence 5889999999998744 45554443
No 357
>PRK08118 topology modulation protein; Reviewed
Probab=53.42 E-value=25 Score=22.30 Aligned_cols=32 Identities=6% Similarity=0.185 Sum_probs=28.0
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceEEEE
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIE 44 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~ 44 (107)
.+|.|++.++|+-..-++.+-+.+++++...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 57999999999999999999999999876555
No 358
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=53.29 E-value=84 Score=22.70 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=29.9
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHH
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQ 55 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~ 55 (107)
.++.+.+.+....-.++...|++.++++..+++..++......
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~ 65 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVD 65 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHH
Confidence 5676666665556677888899999999888776655433333
No 359
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=53.17 E-value=52 Score=22.54 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=38.5
Q ss_pred hhhHHHhhcc-CCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeec
Q 033962 2 ALPKAQETVS-SNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGC 80 (107)
Q Consensus 2 a~~~~~~~~~-~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~ 80 (107)
|++.++.+-. ..+|.+.+..+=-.-+.+..-|.++|++..+-+|-..- ....+.+.+ ...-|.+++++.....|
T Consensus 28 a~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl--~aa~~~~~~---~~lrP~l~v~d~a~~dF 102 (262)
T KOG3040|consen 28 AVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSL--PAARQYLEE---NQLRPYLIVDDDALEDF 102 (262)
T ss_pred HHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCcc--HHHHHHHHh---cCCCceEEEcccchhhC
Confidence 3445555542 33344444443334456667777778777666665542 333333332 24457777776544433
No 360
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=52.47 E-value=55 Score=20.34 Aligned_cols=62 Identities=23% Similarity=0.405 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECC-eEEeecHHHHHHHHcCCcHHHHHh
Q 033962 26 CVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGG-KHIGGCDSTTALHREGKLVPLLTE 98 (107)
Q Consensus 26 C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g-~~ig~~~~~~~~~~~~~l~~~L~~ 98 (107)
-.+.+..|.++|+.+..+++..... .+..+.+. ..-.||+.| .. ..+...+.+..+.+.|++
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~-~~~~~~i~------~ad~I~~~GG~~----~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRND-ADILEAIR------EADAIFLGGGDT----FRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGH-HHHHHHHH------HSSEEEE--S-H----HHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCCh-HHHHHHHH------hCCEEEECCCCH----HHHHHHHHhCCHHHHHHH
Confidence 4678899999998877777776522 23333332 344777644 32 234445555566666665
No 361
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=52.35 E-value=39 Score=20.85 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCceEEEEcCCC
Q 033962 27 VSVKELFQQLGVTFKAIELDKE 48 (107)
Q Consensus 27 ~~a~~~l~~~~i~~~~~~i~~~ 48 (107)
.++..+|++++++|+.++....
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~ 23 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPES 23 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCCC
Confidence 4678999999999999888853
No 362
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=52.16 E-value=45 Score=19.25 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=33.6
Q ss_pred ccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCC------ceeEEEE
Q 033962 10 VSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQK------TVPNVFI 72 (107)
Q Consensus 10 ~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~------~vP~i~i 72 (107)
.....+.+++-+..+.= ..+.++++.+++|..+-=... .+.+.+|.. .+|.+|+
T Consensus 55 ~~~~~~~vi~is~d~~~-~~~~~~~~~~~~~~~~~D~~~--------~~~~~~~~~~~~~~~~~p~~~l 114 (124)
T PF00578_consen 55 YKDKGVQVIGISTDDPE-EIKQFLEEYGLPFPVLSDPDG--------ELAKAFGIEDEKDTLALPAVFL 114 (124)
T ss_dssp HHTTTEEEEEEESSSHH-HHHHHHHHHTCSSEEEEETTS--------HHHHHTTCEETTTSEESEEEEE
T ss_pred hccceEEeeeccccccc-chhhhhhhhccccccccCcch--------HHHHHcCCccccCCceEeEEEE
Confidence 34445555544433332 789999999988865433222 556666766 8898865
No 363
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=51.43 E-value=44 Score=24.99 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=29.8
Q ss_pred HHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCceEEEEcC
Q 033962 6 AQETVSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELD 46 (107)
Q Consensus 6 ~~~~~~~~~v~~y~~-----~~Cp~C~~a~~~l~~~~i~~~~~~i~ 46 (107)
+..+...+-|++=.+ ++|-||+.++..|...+-+.+.+++-
T Consensus 210 iaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~i 255 (583)
T KOG2454|consen 210 IAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVI 255 (583)
T ss_pred HHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhhee
Confidence 344455566666433 68999999999999999887666653
No 364
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=50.49 E-value=93 Score=22.39 Aligned_cols=77 Identities=5% Similarity=0.001 Sum_probs=48.6
Q ss_pred hhccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcC----------CCCC-chHHHHHHHhhcCCCceeEEEECCeE
Q 033962 8 ETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELD----------KESD-GSDIQSALAEWTGQKTVPNVFIGGKH 76 (107)
Q Consensus 8 ~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~----------~~~~-~~~~~~~l~~~~~~~~vP~i~i~g~~ 76 (107)
++++..-+-+|+-.++..+..+..+.++.+||+...... ..+. ..... .+.+.++++++=.++..+..
T Consensus 58 ~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~-~~i~~~~wk~vaiiYd~~~~ 136 (371)
T cd06388 58 SQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALL-SLLDHYEWNRFVFLYDTDRG 136 (371)
T ss_pred HHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHH-HHHHhcCceEEEEEecCCcc
Confidence 455666678899889999999999999999998543322 1111 11222 24455678877777764554
Q ss_pred EeecHHHHH
Q 033962 77 IGGCDSTTA 85 (107)
Q Consensus 77 ig~~~~~~~ 85 (107)
++..+.+.+
T Consensus 137 ~~~lq~l~~ 145 (371)
T cd06388 137 YSILQAIME 145 (371)
T ss_pred HHHHHHHHH
Confidence 444444433
No 365
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=49.68 E-value=40 Score=24.83 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=26.7
Q ss_pred cCCcEEEEEeCCC---------hhHHHHHHHHHhcCCceEEEEcCCC
Q 033962 11 SSNSVVVFSKTLC---------PFCVSVKELFQQLGVTFKAIELDKE 48 (107)
Q Consensus 11 ~~~~v~~y~~~~C---------p~C~~a~~~l~~~~i~~~~~~i~~~ 48 (107)
...+|+||..+.= -|=+.++.+|..-+++|+.++=...
T Consensus 66 ~PRKlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~AaglDyevv~g~rq 112 (382)
T PF11711_consen 66 LPRKLTVYIAPPPGDGLDVARKYFREYVKPILVAAGLDYEVVEGRRQ 112 (382)
T ss_pred CCceEEEEeeCCCCccHHHHHHHHHHHHHHHHHhhccceEEeccccc
Confidence 4578999988431 1233667777777999998887665
No 366
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=49.45 E-value=41 Score=20.84 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=17.5
Q ss_pred CcEEEEEe-CCChhHHHHHHHHHh
Q 033962 13 NSVVVFSK-TLCPFCVSVKELFQQ 35 (107)
Q Consensus 13 ~~v~~y~~-~~Cp~C~~a~~~l~~ 35 (107)
..|.+|+. +-|+.|..+..=|..
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~ 120 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKK 120 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHH
Confidence 57899987 789999976655543
No 367
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=48.71 E-value=11 Score=22.08 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=25.0
Q ss_pred HHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCce
Q 033962 5 KAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTF 40 (107)
Q Consensus 5 ~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~ 40 (107)
.+++.... .+..|..|...+-..+..++.+.|+.|
T Consensus 88 ~l~~~~g~-~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 88 ILEEITGR-PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp HHHHHHSS-EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHHhCC-CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 34444444 677888888888889999999999876
No 368
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=48.66 E-value=16 Score=24.15 Aligned_cols=35 Identities=34% Similarity=0.464 Sum_probs=22.2
Q ss_pred HHHHHhhcCCCceeEE-EECCeEEeecHHHHHHHHc
Q 033962 55 QSALAEWTGQKTVPNV-FIGGKHIGGCDSTTALHRE 89 (107)
Q Consensus 55 ~~~l~~~~~~~~vP~i-~i~g~~ig~~~~~~~~~~~ 89 (107)
+..+.+.-+.+++|-| |++++-..+..++.+++..
T Consensus 102 rh~l~~~~~~g~vP~IkFV~DK~~~~l~e~d~ll~~ 137 (207)
T KOG4700|consen 102 RHRLEESIGIGTVPEIKFVGDKALLMLQEMDKLLRE 137 (207)
T ss_pred HHHHHHHhccccCCceEEecchHHHHHHHHHHHHHH
Confidence 3344445567788866 9999876666655555443
No 369
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=47.77 E-value=43 Score=17.71 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=9.7
Q ss_pred CChhHH-HHHHHHHhcCC
Q 033962 22 LCPFCV-SVKELFQQLGV 38 (107)
Q Consensus 22 ~Cp~C~-~a~~~l~~~~i 38 (107)
.||..- +++..|++...
T Consensus 9 ~CP~Pll~~~~~l~~l~~ 26 (70)
T PF01206_consen 9 SCPMPLLKAKKALKELPP 26 (70)
T ss_dssp STTHHHHHHHHHHHTSGT
T ss_pred CCCHHHHHHHHHHHhcCC
Confidence 466553 66666666543
No 370
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=47.65 E-value=59 Score=20.12 Aligned_cols=22 Identities=9% Similarity=0.309 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCceEEEEcCCCC
Q 033962 28 SVKELFQQLGVTFKAIELDKES 49 (107)
Q Consensus 28 ~a~~~l~~~~i~~~~~~i~~~~ 49 (107)
.+..+|++++++|+.++-...+
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~ 23 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDP 23 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCC
Confidence 4789999999999999888653
No 371
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=47.40 E-value=89 Score=21.30 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=34.3
Q ss_pred hHHHhhccCC--cEEEE-----EeCCChhHHHHHHHHHhcCCceEEEEcCCCC
Q 033962 4 PKAQETVSSN--SVVVF-----SKTLCPFCVSVKELFQQLGVTFKAIELDKES 49 (107)
Q Consensus 4 ~~~~~~~~~~--~v~~y-----~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~ 49 (107)
..+.+.++.. +|.+. ...+-+|-.+++..|.++|..+..+++...+
T Consensus 22 ~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~ 74 (224)
T COG3340 22 PFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPP 74 (224)
T ss_pred HHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCC
Confidence 4556655554 45543 2256789999999999999999999998875
No 372
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=47.08 E-value=40 Score=25.26 Aligned_cols=30 Identities=13% Similarity=0.449 Sum_probs=20.1
Q ss_pred CcEEEEEeCCChhHHH----HHHHHHhcCCceEEE
Q 033962 13 NSVVVFSKTLCPFCVS----VKELFQQLGVTFKAI 43 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~----a~~~l~~~~i~~~~~ 43 (107)
...++.+ ++|+.|.+ +.+-+++.|||...+
T Consensus 337 VDAvILt-stCgtCtrcga~m~keiE~~GIPvV~i 370 (431)
T TIGR01917 337 VDAVILT-STUGTCTRCGATMVKEIERAGIPVVHI 370 (431)
T ss_pred CCEEEEc-CCCCcchhHHHHHHHHHHHcCCCEEEE
Confidence 3566665 68999985 445557789987543
No 373
>PRK04195 replication factor C large subunit; Provisional
Probab=46.98 E-value=1.2e+02 Score=22.74 Aligned_cols=37 Identities=5% Similarity=0.098 Sum_probs=30.3
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCC
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKE 48 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~ 48 (107)
...+.+|+-++|+-..-++.+..+.+.++.+++....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 3458889999999999999999999887777766543
No 374
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=46.77 E-value=23 Score=24.03 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=20.1
Q ss_pred EEEeCCChhHHHHHHHHHhcCCc
Q 033962 17 VFSKTLCPFCVSVKELFQQLGVT 39 (107)
Q Consensus 17 ~y~~~~Cp~C~~a~~~l~~~~i~ 39 (107)
++-+..||.++++|.-|++.++.
T Consensus 150 i~~t~~~pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 150 ISKTSGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred EeccccCcHHHHHHHHHHHcCCC
Confidence 46668899999999999999885
No 375
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=46.48 E-value=7.6 Score=22.06 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=32.2
Q ss_pred EEEeCCChhHHHHHHHHHhc-----CCc--eEEEEcCCCCCchHHHHHHHhhcCCCceeEEE
Q 033962 17 VFSKTLCPFCVSVKELFQQL-----GVT--FKAIELDKESDGSDIQSALAEWTGQKTVPNVF 71 (107)
Q Consensus 17 ~y~~~~Cp~C~~a~~~l~~~-----~i~--~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~ 71 (107)
+|....-+.+..+...++.. +.+ .+.+||..+| ++++..+.-..|+++
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P-------~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQP-------ELAEEDRIVATPTLI 56 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSH-------SHHTTTEEECHHHHH
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCH-------hHHhHCCeeecceEe
Confidence 67777778888888777653 334 4889999885 445555555566553
No 376
>PLN02590 probable tyrosine decarboxylase
Probab=45.91 E-value=1.4e+02 Score=23.09 Aligned_cols=71 Identities=11% Similarity=0.199 Sum_probs=43.5
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCC---ceEEEEcCCCC----CchHHHHHHHhhcCCCceeEEEE---CCeEEeecHH
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGV---TFKAIELDKES----DGSDIQSALAEWTGQKTVPNVFI---GGKHIGGCDS 82 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i---~~~~~~i~~~~----~~~~~~~~l~~~~~~~~vP~i~i---~g~~ig~~~~ 82 (107)
.++++|.+..+.+|. .+.+.=+|+ ....+.++... +.....+.+.+.......|.+++ |-...|.+|+
T Consensus 228 ~~~vvy~S~~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp 305 (539)
T PLN02590 228 PQLVVYGSDQTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP 305 (539)
T ss_pred CCEEEEecCCchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC
Confidence 468899888898884 344444455 35666666321 22445555555444556887755 5567777777
Q ss_pred HHH
Q 033962 83 TTA 85 (107)
Q Consensus 83 ~~~ 85 (107)
+.+
T Consensus 306 l~~ 308 (539)
T PLN02590 306 LVP 308 (539)
T ss_pred HHH
Confidence 765
No 377
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=45.65 E-value=23 Score=20.94 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=19.9
Q ss_pred eCCChhHHHHHHHHHhcCCceEE
Q 033962 20 KTLCPFCVSVKELFQQLGVTFKA 42 (107)
Q Consensus 20 ~~~Cp~C~~a~~~l~~~~i~~~~ 42 (107)
.++..+|-+..+-|+.+.++|++
T Consensus 43 fsnnqhclrtmrhleklkipyef 65 (138)
T PF05663_consen 43 FSNNQHCLRTMRHLEKLKIPYEF 65 (138)
T ss_pred HcCcHHHHHHHHHHHhcCCCeee
Confidence 36788999999999999999864
No 378
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=45.63 E-value=6.6 Score=26.25 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=39.3
Q ss_pred EEEEEe-----CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEe--ecHHHHHHH
Q 033962 15 VVVFSK-----TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIG--GCDSTTALH 87 (107)
Q Consensus 15 v~~y~~-----~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig--~~~~~~~~~ 87 (107)
-.+|.+ -+|++|.....|=.+.+.++....+ .++.+.+.... ....=.++.||++.- +..++.+.+
T Consensus 23 ~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~------~~I~~~i~~~~-~~~~~V~lTGGEP~~~~~l~~Ll~~l 95 (212)
T COG0602 23 PSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSA------DEILADIKSLG-YKARGVSLTGGEPLLQPNLLELLELL 95 (212)
T ss_pred eeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCH------HHHHHHHHhcC-CCcceEEEeCCcCCCcccHHHHHHHH
Confidence 456655 4788898766654444333433332 23344444331 221224467998732 455555555
Q ss_pred HcCCcHHHHHhcC
Q 033962 88 REGKLVPLLTEAG 100 (107)
Q Consensus 88 ~~~~l~~~L~~~~ 100 (107)
....+.-.|+..|
T Consensus 96 ~~~g~~~~lETng 108 (212)
T COG0602 96 KRLGFRIALETNG 108 (212)
T ss_pred HhCCceEEecCCC
Confidence 5444444444433
No 379
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=45.62 E-value=65 Score=19.24 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE
Q 033962 25 FCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV 70 (107)
Q Consensus 25 ~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i 70 (107)
|=+..++..++.|+.++.+.+..+....+..+.+.+.+....+=-|
T Consensus 46 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GI 91 (117)
T PF00763_consen 46 YVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGI 91 (117)
T ss_dssp HHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEE
T ss_pred HHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEE
Confidence 4456677788899999999998877777787787777655544333
No 380
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=45.23 E-value=24 Score=20.95 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=13.6
Q ss_pred CceeEEEECCeEEeecH
Q 033962 65 KTVPNVFIGGKHIGGCD 81 (107)
Q Consensus 65 ~~vP~i~i~g~~ig~~~ 81 (107)
.-.|.+|.||+.+|=-+
T Consensus 80 ECTplvF~n~~LvgWG~ 96 (102)
T PF11399_consen 80 ECTPLVFKNGKLVGWGD 96 (102)
T ss_pred ceEEEEEECCEEEEEcH
Confidence 46899999999987433
No 381
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.00 E-value=82 Score=22.72 Aligned_cols=51 Identities=22% Similarity=0.534 Sum_probs=32.1
Q ss_pred EEEEEe----CCChhHHHHHHHHH--------hc------CCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 15 VVVFSK----TLCPFCVSVKELFQ--------QL------GVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 15 v~~y~~----~~Cp~C~~a~~~l~--------~~------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
|++|++ ..|+-|..+.+=++ .. .+=|..+|.++.+ ..-+..+..++|.+++
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p-------~~Fq~l~ln~~P~l~~ 132 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP-------QVFQQLNLNNVPHLVL 132 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH-------HHHHHhcccCCCeEEE
Confidence 667776 68999986653332 11 1125677887763 3344557788998865
No 382
>PF04214 DUF411: Protein of unknown function, DUF; InterPro: IPR007332 The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=44.65 E-value=43 Score=18.49 Aligned_cols=50 Identities=24% Similarity=0.259 Sum_probs=26.9
Q ss_pred HHHhhcCC----CceeEEEECCeEEeec---HHHHHHHHcCCcHHHHHhcCcccccc
Q 033962 57 ALAEWTGQ----KTVPNVFIGGKHIGGC---DSTTALHREGKLVPLLTEAGAVAKTA 106 (107)
Q Consensus 57 ~l~~~~~~----~~vP~i~i~g~~ig~~---~~~~~~~~~~~l~~~L~~~~~~~~~~ 106 (107)
.+++.+|. .+--+.+++|.+|-|. +++.+++.+.--..=|.-.|+.+.+|
T Consensus 12 ~ik~~~gVP~~l~SCHTa~v~gy~iEGHVPa~~I~~lL~e~P~~~GlavPGMP~GSP 68 (70)
T PF04214_consen 12 AIKQRLGVPPELASCHTAVVGGYVIEGHVPADDIKRLLAEKPDARGLAVPGMPAGSP 68 (70)
T ss_pred HHHHHhCCCchhccccEEEECCEEEEccCCHHHHHHHHhcCCCceEEeCCCCCCCCC
Confidence 55656553 3555789999999876 44444444333222333334444433
No 383
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=43.93 E-value=21 Score=27.77 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=35.1
Q ss_pred hhHHHhhccCCcEEE--EEeCCChhHHHHHH-------HHHhcCCceEEEEcCCC--CCchHHH-HHHHhhcCCCcee
Q 033962 3 LPKAQETVSSNSVVV--FSKTLCPFCVSVKE-------LFQQLGVTFKAIELDKE--SDGSDIQ-SALAEWTGQKTVP 68 (107)
Q Consensus 3 ~~~~~~~~~~~~v~~--y~~~~Cp~C~~a~~-------~l~~~~i~~~~~~i~~~--~~~~~~~-~~l~~~~~~~~vP 68 (107)
|+.++++-..++.++ .++++|.+|+.+.. +-+-++-+|..++||.. |+-..+. ..+...+|.++.|
T Consensus 102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 455666655555444 46689999984432 22223445666666664 3333332 2333445666666
No 384
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=43.80 E-value=1.2e+02 Score=21.77 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=43.5
Q ss_pred hhccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCC----------CCCchHHHHHHHhhcCCCceeEEEECC
Q 033962 8 ETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDK----------ESDGSDIQSALAEWTGQKTVPNVFIGG 74 (107)
Q Consensus 8 ~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~----------~~~~~~~~~~l~~~~~~~~vP~i~i~g 74 (107)
++++..-+-+|+-..+..+..+..+.+++++|+....... .|......-.+.+.++++++=.++.++
T Consensus 52 ~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~i~~~~wk~vailYdsd 128 (370)
T cd06389 52 SQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSD 128 (370)
T ss_pred HHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHHHHHhcCCcEEEEEecCc
Confidence 4556666788998888999999999999999986543221 111112222334556888877777543
No 385
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=43.58 E-value=1.2e+02 Score=21.89 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=36.1
Q ss_pred hhccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCC
Q 033962 8 ETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKES 49 (107)
Q Consensus 8 ~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~ 49 (107)
.+.....|.+.+.++|.-..-++.+...++.++..++.+.+-
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l 101 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHV 101 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 344466799999999999999999999999999988887764
No 386
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=43.35 E-value=47 Score=19.38 Aligned_cols=52 Identities=15% Similarity=0.076 Sum_probs=33.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc--------CCceEEEEcCCCCCchHHHHHHHhhcCCC
Q 033962 14 SVVVFSKTLCPFCVSVKELFQQL--------GVTFKAIELDKESDGSDIQSALAEWTGQK 65 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~l~~~~~~~ 65 (107)
-+++++.++|+-..-++.+++.+ +.++..++.........+...+....+..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 65 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLP 65 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-S
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcc
Confidence 46788889999888888888776 56666666655544455555665555543
No 387
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=43.27 E-value=1.5e+02 Score=22.64 Aligned_cols=74 Identities=18% Similarity=0.349 Sum_probs=44.6
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCc----hHHHHHHHhhcCCCceeEEEE---CCeEEeecHHH
Q 033962 11 SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDG----SDIQSALAEWTGQKTVPNVFI---GGKHIGGCDST 83 (107)
Q Consensus 11 ~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~----~~~~~~l~~~~~~~~vP~i~i---~g~~ig~~~~~ 83 (107)
.-.++++|++..|.|+.+--..+-.+|- ...+.|+.++.+ .+....+...-..+.+|.++- |....|-+|++
T Consensus 194 ~~p~lilFtSeesHYSi~kaAa~lg~gt-d~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL 272 (510)
T KOG0629|consen 194 ALPPLILFTSEESHYSIKKAAAFLGLGT-DHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDL 272 (510)
T ss_pred cCCcEEEEecccchhhHHHHHHHhccCC-ceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcH
Confidence 3457999999999998644333333333 333344444333 344445555445667887753 55788888877
Q ss_pred HH
Q 033962 84 TA 85 (107)
Q Consensus 84 ~~ 85 (107)
..
T Consensus 273 ~~ 274 (510)
T KOG0629|consen 273 NG 274 (510)
T ss_pred HH
Confidence 54
No 388
>PF07955 DUF1687: Protein of unknown function (DUF1687) ; InterPro: IPR012882 This is a family of uncharacterised fungal proteins. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process, 0005739 mitochondrion; PDB: 1WPI_A.
Probab=42.67 E-value=1.6 Score=27.13 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=29.1
Q ss_pred HHHhh-ccCCcEEEEEeCCChhHHHHHHHHHhcCCce------EEEEcCCCCCchHHHHHHHhhcCC
Q 033962 5 KAQET-VSSNSVVVFSKTLCPFCVSVKELFQQLGVTF------KAIELDKESDGSDIQSALAEWTGQ 64 (107)
Q Consensus 5 ~~~~~-~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~------~~~~i~~~~~~~~~~~~l~~~~~~ 64 (107)
.+|.+ -....|++|..+.-|.|.++-.+|+...-.- -.+||.......+....+....|.
T Consensus 3 lFR~lQ~sp~~ITLFH~~~~p~S~~~l~~Lk~a~~~~~~~~~~F~LeV~~~~PT~DQlk~I~~~~~~ 69 (133)
T PF07955_consen 3 LFRTLQKSPDIITLFHNPSSPASNRLLNLLKQASSNANETATEFELEVTEKPPTLDQLKYILDYCGK 69 (133)
T ss_dssp -SS--SS---EEEEEE---SSSCCCCCTTTTSS---S------SEEEEEE----HHHHHHHHHSSSS
T ss_pred hhhhccCCCCeEEEecCCCChhHHHHHHHHHHhhhcccccceeEEEEecCCCcCHHHHHHHHHHHcc
Confidence 34444 3445689999999999999999998753322 345665444444444455554443
No 389
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.53 E-value=12 Score=26.28 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=9.3
Q ss_pred eCCChhHHHHHHH
Q 033962 20 KTLCPFCVSVKEL 32 (107)
Q Consensus 20 ~~~Cp~C~~a~~~ 32 (107)
.++||||++-..+
T Consensus 270 kqtCPYCKekVdl 282 (328)
T KOG1734|consen 270 KQTCPYCKEKVDL 282 (328)
T ss_pred CCCCchHHHHhhH
Confidence 3799999865443
No 390
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=42.48 E-value=69 Score=19.74 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCceEEEEcCCCC
Q 033962 27 VSVKELFQQLGVTFKAIELDKES 49 (107)
Q Consensus 27 ~~a~~~l~~~~i~~~~~~i~~~~ 49 (107)
+++..+|++++++|+.++.....
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~ 24 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEG 24 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCC
Confidence 46788999999999999876543
No 391
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=42.35 E-value=8.3 Score=24.31 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=11.4
Q ss_pred CCChhHHHHHHHHH
Q 033962 21 TLCPFCVSVKELFQ 34 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~ 34 (107)
-.||+|+.....|.
T Consensus 10 i~CPhCRQ~ipALt 23 (163)
T TIGR02652 10 IRCPHCRQNIPALT 23 (163)
T ss_pred CcCchhhcccchhe
Confidence 37999998888774
No 392
>KOG1351 consensus Vacuolar H+-ATPase V1 sector, subunit B [Energy production and conversion]
Probab=42.07 E-value=40 Score=24.38 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=33.1
Q ss_pred ChhhHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCC
Q 033962 1 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGV 38 (107)
Q Consensus 1 ~a~~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i 38 (107)
+|...++.+.+..+|-+|+..+-|+-.-+..+++..|+
T Consensus 152 s~idvmnsiargqkipifsaaglphneiaaqicrqagl 189 (489)
T KOG1351|consen 152 SAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGL 189 (489)
T ss_pred hHHhhhhHHhccCccceeecCCCChhHHHHHHHHhcCc
Confidence 35567788888999999999999999999999998775
No 393
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=41.95 E-value=1.3e+02 Score=22.56 Aligned_cols=69 Identities=9% Similarity=0.076 Sum_probs=44.7
Q ss_pred HHhhccC---CcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHH---HHHHhhcCCCceeEEEECCe
Q 033962 6 AQETVSS---NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQ---SALAEWTGQKTVPNVFIGGK 75 (107)
Q Consensus 6 ~~~~~~~---~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~---~~l~~~~~~~~vP~i~i~g~ 75 (107)
++++++. ..+++|+-|+|.-.--|+.+-...+..|+.++...+.- .+++ +.-++..+.+.-+.+|++.-
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gv-kdlr~i~e~a~~~~~~gr~tiLflDEI 113 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGV-KDLREIIEEARKNRLLGRRTILFLDEI 113 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccH-HHHHHHHHHHHHHHhcCCceEEEEehh
Confidence 4444443 34788999999999999999999999998888765432 2222 22222333333467788753
No 394
>COG4727 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.88 E-value=9 Score=26.26 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEE
Q 033962 26 CVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 26 C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
-.++..||+..+.....++++.+ ...+....+|.++.++...
T Consensus 195 Rn~aqrWLr~~~Y~Ps~v~~~~~----------~r~gA~~fvpnv~tdDhP~ 236 (287)
T COG4727 195 RNRAQRWLRQASYAPSPVDIDSH----------ARMGASTFVPNVHTDDHPE 236 (287)
T ss_pred hHHHHHHHHHhcCCCCccccchH----------hhhccceeccccccCCCcH
Confidence 34899999999988888888876 3333456789998887643
No 395
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=41.63 E-value=54 Score=24.56 Aligned_cols=29 Identities=10% Similarity=0.418 Sum_probs=19.5
Q ss_pred CcEEEEEeCCChhHHH----HHHHHHhcCCceEE
Q 033962 13 NSVVVFSKTLCPFCVS----VKELFQQLGVTFKA 42 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~----a~~~l~~~~i~~~~ 42 (107)
...++.+ ++|+.|.+ +.+-+++.|||...
T Consensus 337 VDAVILT-stCgtC~r~~a~m~keiE~~GiPvv~ 369 (431)
T TIGR01918 337 VDAVILT-STUGTCTRCGATMVKEIERAGIPVVH 369 (431)
T ss_pred CCEEEEc-CCCCcchhHHHHHHHHHHHcCCCEEE
Confidence 3466665 67999985 44455678998643
No 396
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=41.62 E-value=20 Score=16.91 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=8.7
Q ss_pred HHHHHHHhcCCce
Q 033962 28 SVKELFQQLGVTF 40 (107)
Q Consensus 28 ~a~~~l~~~~i~~ 40 (107)
..+.+|.++||+|
T Consensus 8 ~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 8 QLKRILDEHGIEF 20 (35)
T ss_dssp HHHHHHHHHT---
T ss_pred HHHHHHHHcCCCC
Confidence 6788999999876
No 397
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=41.34 E-value=17 Score=21.85 Aligned_cols=14 Identities=36% Similarity=0.994 Sum_probs=7.1
Q ss_pred cEEEEEe---CCChhHH
Q 033962 14 SVVVFSK---TLCPFCV 27 (107)
Q Consensus 14 ~v~~y~~---~~Cp~C~ 27 (107)
.+++|+. -.|+||.
T Consensus 7 ~~~~~t~~Cnl~C~yC~ 23 (139)
T PF13353_consen 7 RVVLFTNGCNLRCKYCF 23 (139)
T ss_dssp EEEEEEC--SB--TT-T
T ss_pred EEEEEcCcccccCcCcC
Confidence 4677755 3678884
No 398
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=41.33 E-value=82 Score=22.95 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=21.1
Q ss_pred EEEEEeCCChhH----HHHHHHHHhcCCceEEEEcCCC
Q 033962 15 VVVFSKTLCPFC----VSVKELFQQLGVTFKAIELDKE 48 (107)
Q Consensus 15 v~~y~~~~Cp~C----~~a~~~l~~~~i~~~~~~i~~~ 48 (107)
|+.+....|..- ..+++.|++.||||-.+|++.+
T Consensus 325 VI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~~ 362 (380)
T TIGR02263 325 VIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAEN 362 (380)
T ss_pred EEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecCc
Confidence 555666666432 2556667777777777776653
No 399
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=41.31 E-value=8.4 Score=24.23 Aligned_cols=14 Identities=21% Similarity=0.588 Sum_probs=11.4
Q ss_pred CCChhHHHHHHHHH
Q 033962 21 TLCPFCVSVKELFQ 34 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~ 34 (107)
-.||+|+.....|.
T Consensus 7 i~CPhCRq~ipALt 20 (161)
T PF09654_consen 7 IQCPHCRQTIPALT 20 (161)
T ss_pred CcCchhhcccchhe
Confidence 36999998888774
No 400
>PRK06683 hypothetical protein; Provisional
Probab=41.16 E-value=67 Score=18.06 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=28.3
Q ss_pred EEEEEeCCChh--HHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCC
Q 033962 15 VVVFSKTLCPF--CVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQK 65 (107)
Q Consensus 15 v~~y~~~~Cp~--C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~ 65 (107)
-.+|...+|+. .+....+.+.+++|+.+++ +. .+|-...|..
T Consensus 29 klViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~-t~--------~eLG~A~G~~ 72 (82)
T PRK06683 29 KEVVIAEDADMRLTHVIIRTALQHNIPITKVE-SV--------RKLGKVAGIQ 72 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC-CH--------HHHHHHhCCc
Confidence 34566777874 5677788889999998777 33 2555555543
No 401
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=40.55 E-value=35 Score=17.08 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=12.9
Q ss_pred CCceeEEEECCeEEeec
Q 033962 64 QKTVPNVFIGGKHIGGC 80 (107)
Q Consensus 64 ~~~vP~i~i~g~~ig~~ 80 (107)
..+++.+++||+.+-.-
T Consensus 17 ~~GI~~V~VNG~~vv~~ 33 (48)
T PF07908_consen 17 AEGIDYVFVNGQIVVED 33 (48)
T ss_dssp -BSEEEEEETTEEEECT
T ss_pred CCCEEEEEECCEEEEEC
Confidence 36789999999977543
No 402
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=40.46 E-value=79 Score=18.80 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECC
Q 033962 23 CPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGG 74 (107)
Q Consensus 23 Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g 74 (107)
-|.-...+...++.|+.|..+-|.......+..+.+.+......-|++....
T Consensus 43 qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~ 94 (110)
T PF04273_consen 43 QPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCR 94 (110)
T ss_dssp -T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-S
T ss_pred CCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 4566678889999999999999987655555555666555544458887643
No 403
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=40.33 E-value=53 Score=16.69 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=17.9
Q ss_pred eCCChhHH-HHHHHHHhc-CCceEEEEcC
Q 033962 20 KTLCPFCV-SVKELFQQL-GVTFKAIELD 46 (107)
Q Consensus 20 ~~~Cp~C~-~a~~~l~~~-~i~~~~~~i~ 46 (107)
.-.|+.|. +++..|.+. |+.-..+|+.
T Consensus 6 ~m~C~~C~~~v~~~l~~~~GV~~v~vd~~ 34 (62)
T PF00403_consen 6 GMTCEGCAKKVEKALSKLPGVKSVKVDLE 34 (62)
T ss_dssp STTSHHHHHHHHHHHHTSTTEEEEEEETT
T ss_pred CcccHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 35899996 677788775 6654444443
No 404
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=39.76 E-value=33 Score=20.72 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=29.6
Q ss_pred ChhhHHHhhcc---CCcEEEEEe-----CCChhHHHHHHHHHhcCCce
Q 033962 1 MALPKAQETVS---SNSVVVFSK-----TLCPFCVSVKELFQQLGVTF 40 (107)
Q Consensus 1 ~a~~~~~~~~~---~~~v~~y~~-----~~Cp~C~~a~~~l~~~~i~~ 40 (107)
||+..++..+. ...+.+++. ++-|--..+...|+++|++.
T Consensus 14 mAEai~~~~~~~~~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~ 61 (138)
T PF01451_consen 14 MAEAILRHLLKQRLGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDI 61 (138)
T ss_dssp HHHHHHHHHHHHTHTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhccccccCCcEEEEEeecccccccccchHHHHHHHhCCCc
Confidence 67777777753 347888876 45667779999999999864
No 405
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=39.55 E-value=29 Score=20.65 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=13.2
Q ss_pred EEEEEeCCChhHHHHHHHHH
Q 033962 15 VVVFSKTLCPFCVSVKELFQ 34 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~ 34 (107)
...-..+.||.|.+-+.-|.
T Consensus 26 ~k~H~~s~Cp~C~kkraeLa 45 (104)
T PF15379_consen 26 AKQHNSSQCPSCNKKRAELA 45 (104)
T ss_pred ccccCcccChHHHHHHHHHH
Confidence 34445678999997655443
No 406
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=39.51 E-value=94 Score=19.29 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCceEEEEcCCC
Q 033962 27 VSVKELFQQLGVTFKAIELDKE 48 (107)
Q Consensus 27 ~~a~~~l~~~~i~~~~~~i~~~ 48 (107)
.++..+|++++++|+.++....
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~ 23 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPV 23 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCc
Confidence 3678899999999999887654
No 407
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=39.32 E-value=37 Score=23.62 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=19.9
Q ss_pred EEEeCCChhHHHHHHHHHh-cCCc
Q 033962 17 VFSKTLCPFCVSVKELFQQ-LGVT 39 (107)
Q Consensus 17 ~y~~~~Cp~C~~a~~~l~~-~~i~ 39 (107)
++-+..||.++++|..|++ +|++
T Consensus 169 i~~t~~~pla~~~R~~lr~~~~~~ 192 (268)
T PRK15116 169 LAKTIQDPLAAKLRERLKSDFGVV 192 (268)
T ss_pred eecccCChHHHHHHHHHHHhhCCC
Confidence 4666899999999999998 7875
No 408
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=39.12 E-value=1.4e+02 Score=21.24 Aligned_cols=43 Identities=9% Similarity=0.224 Sum_probs=28.4
Q ss_pred CcEEEEEeCCC--hhHHHHHHHHHhcCCceEEEEcCCCCCchHHH
Q 033962 13 NSVVVFSKTLC--PFCVSVKELFQQLGVTFKAIELDKESDGSDIQ 55 (107)
Q Consensus 13 ~~v~~y~~~~C--p~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~ 55 (107)
.++++.+.+.. +...++...|++.++.+.+.++..++......
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~ 67 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIE 67 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHH
Confidence 45555544322 67778888999999988766677666544443
No 409
>PRK07758 hypothetical protein; Provisional
Probab=39.08 E-value=22 Score=20.83 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=8.6
Q ss_pred EEEEEeCCChhHH
Q 033962 15 VVVFSKTLCPFCV 27 (107)
Q Consensus 15 v~~y~~~~Cp~C~ 27 (107)
-++|-.+.||.|.
T Consensus 14 ~~~~~~~~~~~~~ 26 (95)
T PRK07758 14 HEYYKSSDCPTCP 26 (95)
T ss_pred cceeccCCCCCCc
Confidence 5677776666664
No 410
>PRK02935 hypothetical protein; Provisional
Probab=38.85 E-value=5.7 Score=23.74 Aligned_cols=15 Identities=20% Similarity=0.786 Sum_probs=12.9
Q ss_pred CChhHHHHHHHHHhc
Q 033962 22 LCPFCVSVKELFQQL 36 (107)
Q Consensus 22 ~Cp~C~~a~~~l~~~ 36 (107)
+||.|++..+.|-+-
T Consensus 72 ~CP~C~K~TKmLGrv 86 (110)
T PRK02935 72 ICPSCEKPTKMLGRV 86 (110)
T ss_pred ECCCCCchhhhccce
Confidence 799999999998753
No 411
>PRK06217 hypothetical protein; Validated
Probab=38.59 E-value=57 Score=20.76 Aligned_cols=29 Identities=7% Similarity=-0.035 Sum_probs=25.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceE
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFK 41 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~ 41 (107)
.+|+|.+.++|+-..-++.+-+.+++++.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 46899999999999999999999888754
No 412
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=38.18 E-value=83 Score=21.56 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=38.0
Q ss_pred HHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-CCeEEeecHHH
Q 033962 5 KAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-GGKHIGGCDST 83 (107)
Q Consensus 5 ~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-~g~~ig~~~~~ 83 (107)
.+.+..+...|.++++++.. ....+|.++++++-.+--..-.+ ... .+.....+.|.|.- |+..+.+.+..
T Consensus 60 ~L~~~~~~~gi~f~stpfd~---~s~d~l~~~~~~~~KIaS~dl~n-~~l----L~~~A~tgkPvIlSTG~stl~EI~~A 131 (241)
T PF03102_consen 60 ELFEYCKELGIDFFSTPFDE---ESVDFLEELGVPAYKIASGDLTN-LPL----LEYIAKTGKPVILSTGMSTLEEIERA 131 (241)
T ss_dssp HHHHHHHHTT-EEEEEE-SH---HHHHHHHHHT-SEEEE-GGGTT--HHH----HHHHHTT-S-EEEE-TT--HHHHHHH
T ss_pred HHHHHHHHcCCEEEECCCCH---HHHHHHHHcCCCEEEeccccccC-HHH----HHHHHHhCCcEEEECCCCCHHHHHHH
Confidence 34455667789999877655 67778888898876554443322 222 22333477898865 55555444443
Q ss_pred HH
Q 033962 84 TA 85 (107)
Q Consensus 84 ~~ 85 (107)
.+
T Consensus 132 v~ 133 (241)
T PF03102_consen 132 VE 133 (241)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 413
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=36.97 E-value=1.4e+02 Score=20.68 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=40.3
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCC-ceEEEEcCCCC--CchHHHHHHHhhcCCCcee-EEEECCeEEee
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQLGV-TFKAIELDKES--DGSDIQSALAEWTGQKTVP-NVFIGGKHIGG 79 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~~~i-~~~~~~i~~~~--~~~~~~~~l~~~~~~~~vP-~i~i~g~~ig~ 79 (107)
.+.+.+|+..+|.-+--++.++.++.- ....|+|..+. .-+++.+.+. +.+ .+ .||+|+-.+..
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~---~~~-~kFIlf~DDLsFe~ 119 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLR---DRP-YKFILFCDDLSFEE 119 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHh---cCC-CCEEEEecCCCCCC
Confidence 456999999999999999999987644 36677776642 2233333332 222 34 44777754433
No 414
>PRK10126 tyrosine phosphatase; Provisional
Probab=36.80 E-value=61 Score=20.06 Aligned_cols=38 Identities=11% Similarity=-0.146 Sum_probs=27.3
Q ss_pred ChhhHHHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCce
Q 033962 1 MALPKAQETVSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTF 40 (107)
Q Consensus 1 ~a~~~~~~~~~~~~v~~y~~-----~~Cp~C~~a~~~l~~~~i~~ 40 (107)
||+..++..... +.+++. ++-|--..+...|+++|++.
T Consensus 18 mAEa~~~~~~~~--~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~ 60 (147)
T PRK10126 18 TAERLLQRYHPE--LKVESAGLGALVGKGADPTAISVAAEHQLSL 60 (147)
T ss_pred HHHHHHHHhcCC--eEEEeeeccCCCCCCCCHHHHHHHHHcCCCc
Confidence 677778876643 666654 23466779999999999874
No 415
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=36.10 E-value=33 Score=17.52 Aligned_cols=14 Identities=21% Similarity=0.586 Sum_probs=10.8
Q ss_pred CCChhHHHHHHHHH
Q 033962 21 TLCPFCVSVKELFQ 34 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~ 34 (107)
..|+.|+.++.--.
T Consensus 34 ~RC~~CR~~rk~~~ 47 (49)
T PF13451_consen 34 KRCPSCRQARKQRR 47 (49)
T ss_pred ccCHHHHHHHHHhh
Confidence 57999999887543
No 416
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=35.99 E-value=2.2e+02 Score=22.68 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=39.8
Q ss_pred CcEEEEEe-CCChhHHHHHHHHHhcCCceEEEEcCCC-CCchHHHHHHHhhcCCCceeEEEECCeEEeecHH
Q 033962 13 NSVVVFSK-TLCPFCVSVKELFQQLGVTFKAIELDKE-SDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDS 82 (107)
Q Consensus 13 ~~v~~y~~-~~Cp~C~~a~~~l~~~~i~~~~~~i~~~-~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~ 82 (107)
..+++.+. +....|.+|...|.+.++..+.+|+..- |-..+....+.+ ... -.+.+.+..+||+..
T Consensus 545 ~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k---~~~-~vVt~Ee~~~GG~Gs 612 (641)
T PLN02234 545 ERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAK---SHE-VLITVEEGSIGGFGS 612 (641)
T ss_pred CCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHH---hCC-EEEEECCCCCCcHHH
Confidence 35666554 4457899999999999999999999754 322222223322 122 234444444488853
No 417
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=35.97 E-value=77 Score=23.29 Aligned_cols=41 Identities=22% Similarity=0.444 Sum_probs=28.7
Q ss_pred HHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE--EECCeEE
Q 033962 30 KELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV--FIGGKHI 77 (107)
Q Consensus 30 ~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i--~i~g~~i 77 (107)
.++|++.+|.|-.+|+..+ ..+++..|....+.+ |-+|+.|
T Consensus 83 AQVlE~~gigfg~VD~~Kd-------~klAKKLgv~E~~SiyVfkd~~~I 125 (383)
T PF01216_consen 83 AQVLEDKGIGFGMVDSKKD-------AKLAKKLGVEEEGSIYVFKDGEVI 125 (383)
T ss_dssp HHHCGGCTEEEEEEETTTT-------HHHHHHHT--STTEEEEEETTEEE
T ss_pred HHhccccCcceEEeccHHH-------HHHHHhcCccccCcEEEEECCcEE
Confidence 3455677999999999988 366777787767766 4577655
No 418
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=35.85 E-value=1.9e+02 Score=21.87 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=41.1
Q ss_pred CcEEEEEe-CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhc-CCCceeEEEECCeEEeecHH
Q 033962 13 NSVVVFSK-TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWT-GQKTVPNVFIGGKHIGGCDS 82 (107)
Q Consensus 13 ~~v~~y~~-~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~-~~~~vP~i~i~g~~ig~~~~ 82 (107)
..+++++. ..+..|.++...|.+.|+..+.+|+..-...+. +.+.+.. ....+ .++-++...||+..
T Consensus 341 ~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~--~~i~~sv~kt~~v-vtvEE~~~~gGlG~ 409 (464)
T PRK11892 341 KDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDT--ETIVESVKKTNRL-VTVEEGWPQSGVGA 409 (464)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCH--HHHHHHHHhcCeE-EEEeCCCcCCcHHH
Confidence 35666544 567889999999999999999999977532211 1222222 12222 33456666777743
No 419
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=35.67 E-value=68 Score=17.41 Aligned_cols=17 Identities=18% Similarity=0.610 Sum_probs=13.7
Q ss_pred CceeEEEECCeEEeecH
Q 033962 65 KTVPNVFIGGKHIGGCD 81 (107)
Q Consensus 65 ~~vP~i~i~g~~ig~~~ 81 (107)
..-|.+.+||+.++..+
T Consensus 45 ~~gP~v~V~~~~~~~~t 61 (72)
T cd03082 45 ERAPAALVGQRPVDGAT 61 (72)
T ss_pred CCCCeEEECCEEeCCcC
Confidence 45799999999887664
No 420
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=34.39 E-value=1.1e+02 Score=18.93 Aligned_cols=22 Identities=9% Similarity=0.317 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCceEEEEcCCCC
Q 033962 28 SVKELFQQLGVTFKAIELDKES 49 (107)
Q Consensus 28 ~a~~~l~~~~i~~~~~~i~~~~ 49 (107)
.+..+|++++++|+.++....+
T Consensus 3 ~~~~~L~~~~i~~~~~~h~~~~ 24 (152)
T cd00002 3 PAIRLLDKAKIPYELHEYEHDE 24 (152)
T ss_pred HHHHHHHHcCCCeEEEeecCCC
Confidence 4778999999999999987654
No 421
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=34.37 E-value=1.5e+02 Score=21.63 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=29.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcC
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELD 46 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~ 46 (107)
...|.+|+-|+|+-..-|+.+..+.+.+|..++..
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~ 199 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 199 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence 44589999999999999999999999887766553
No 422
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=34.24 E-value=1e+02 Score=18.31 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=24.3
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcC
Q 033962 11 SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELD 46 (107)
Q Consensus 11 ~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~ 46 (107)
...+|++|.......+..+..+|+..|++ ...++
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~ 118 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLE 118 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeC
Confidence 45678889876666777788888888974 44444
No 423
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=34.23 E-value=1.6e+02 Score=23.76 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=40.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCC------CCchHHHHHHHhhcCCCceeEE-EECC
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKE------SDGSDIQSALAEWTGQKTVPNV-FIGG 74 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~------~~~~~~~~~l~~~~~~~~vP~i-~i~g 74 (107)
..|.+-+-|+|....-|..+-.+++++|..+....- +....+++-+.+ ....-|+| |++.
T Consensus 224 rGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~--A~~~aPcivFiDe 290 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQ--AKSNAPCIVFIDE 290 (802)
T ss_pred CceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHH--HhccCCeEEEeec
Confidence 347777889999999999999999999977665332 111333333332 24567877 6765
No 424
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=34.20 E-value=76 Score=17.05 Aligned_cols=17 Identities=24% Similarity=0.710 Sum_probs=13.4
Q ss_pred CCChhHH-HHHHHHHhcC
Q 033962 21 TLCPFCV-SVKELFQQLG 37 (107)
Q Consensus 21 ~~Cp~C~-~a~~~l~~~~ 37 (107)
-.|.+|. .++..|.+..
T Consensus 11 MtC~~C~~~V~~al~~v~ 28 (71)
T COG2608 11 MTCGHCVKTVEKALEEVD 28 (71)
T ss_pred cCcHHHHHHHHHHHhcCC
Confidence 5899997 6778888764
No 425
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=34.14 E-value=40 Score=18.07 Aligned_cols=22 Identities=18% Similarity=0.548 Sum_probs=16.1
Q ss_pred eCCChhHH--HHHHHHHhcCCceE
Q 033962 20 KTLCPFCV--SVKELFQQLGVTFK 41 (107)
Q Consensus 20 ~~~Cp~C~--~a~~~l~~~~i~~~ 41 (107)
...||-|. ....+.++.+++..
T Consensus 10 GA~CP~C~~~Dtl~mW~En~ve~v 33 (66)
T COG3529 10 GAVCPACQAQDTLAMWRENNVEIV 33 (66)
T ss_pred cCCCcccchhhHHHHHHhcCCceE
Confidence 35799997 45667788888753
No 426
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=34.10 E-value=1.2e+02 Score=19.02 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=13.0
Q ss_pred cEEEEEe---CCChhHHHHHHH
Q 033962 14 SVVVFSK---TLCPFCVSVKEL 32 (107)
Q Consensus 14 ~v~~y~~---~~Cp~C~~a~~~ 32 (107)
.+++|.. -.|++|.....|
T Consensus 17 ~~~vfl~GCnlrC~~C~n~~~~ 38 (147)
T TIGR02826 17 SLAFYITGCPLGCKGCHSPESW 38 (147)
T ss_pred EEEEEeCCCCCCCCCCCChHHc
Confidence 4677766 468999876443
No 427
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=33.94 E-value=73 Score=19.31 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=22.4
Q ss_pred EeCCChhHHHHHHHHHh-cCCceEEEEcCCC
Q 033962 19 SKTLCPFCVSVKELFQQ-LGVTFKAIELDKE 48 (107)
Q Consensus 19 ~~~~Cp~C~~a~~~l~~-~~i~~~~~~i~~~ 48 (107)
.++=|+.|+-+.+++.. .+....+......
T Consensus 74 ~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~~~ 104 (118)
T PF14427_consen 74 QYPPCNSCKGKMRRASEKSGATIQYTWPNGG 104 (118)
T ss_pred ecCCCchhHHHHHHhhhccCcEEEEecCCCC
Confidence 45789999988888766 7877777766553
No 428
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=33.90 E-value=1.8e+02 Score=20.95 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=41.2
Q ss_pred hHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHH
Q 033962 4 PKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDST 83 (107)
Q Consensus 4 ~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~ 83 (107)
..+.+..+...+.++++++.. ....+|.++++++-.+=-..-.+ . .|.+..+..+.|.+.--|- ...+++
T Consensus 79 ~~L~~~~~~~Gi~~~stpfd~---~svd~l~~~~v~~~KIaS~~~~n----~-pLL~~~A~~gkPvilStGm--atl~Ei 148 (329)
T TIGR03569 79 RELKEYCESKGIEFLSTPFDL---ESADFLEDLGVPRFKIPSGEITN----A-PLLKKIARFGKPVILSTGM--ATLEEI 148 (329)
T ss_pred HHHHHHHHHhCCcEEEEeCCH---HHHHHHHhcCCCEEEECcccccC----H-HHHHHHHhcCCcEEEECCC--CCHHHH
Confidence 345555667778888877665 56677888888754332222111 1 2233334567899987665 244444
Q ss_pred H
Q 033962 84 T 84 (107)
Q Consensus 84 ~ 84 (107)
.
T Consensus 149 ~ 149 (329)
T TIGR03569 149 E 149 (329)
T ss_pred H
Confidence 3
No 429
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=33.75 E-value=82 Score=18.12 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=24.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIEL 45 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i 45 (107)
|.+.+.++++-..-++.+.+.+++++...|-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6778999999999999999988877644443
No 430
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=33.69 E-value=68 Score=21.77 Aligned_cols=47 Identities=17% Similarity=0.366 Sum_probs=33.2
Q ss_pred EEeCCChhHHHHHHHHHhcCCce---EEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 18 FSKTLCPFCVSVKELFQQLGVTF---KAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 18 y~~~~Cp~C~~a~~~l~~~~i~~---~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
.+..+-|-|.-....|.+++..| .++.|-.. .....+.-...|++||
T Consensus 118 Ly~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at--------~cIpNYPe~nlPTl~V 167 (240)
T KOG3170|consen 118 LYKQGVPLCALLSHHLQSLACKFPQIKFVKIPAT--------TCIPNYPESNLPTLLV 167 (240)
T ss_pred eeccccHHHHHHHHHHHHHhhcCCcceEEecccc--------cccCCCcccCCCeEEE
Confidence 45678999999999999998776 34444332 2233455678999977
No 431
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.62 E-value=24 Score=18.68 Aligned_cols=13 Identities=31% Similarity=0.810 Sum_probs=10.0
Q ss_pred CCChhHHHHHHHH
Q 033962 21 TLCPFCVSVKELF 33 (107)
Q Consensus 21 ~~Cp~C~~a~~~l 33 (107)
|-||.|.++-.-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 7899999876543
No 432
>PLN02880 tyrosine decarboxylase
Probab=33.44 E-value=2.1e+02 Score=21.64 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=40.7
Q ss_pred CcEEEEEeCCChhHH-HHHHHHHhcCCc---eEEEEcCCCC----CchHHHHHHHhhcCCCceeEEEE---CCeEEeecH
Q 033962 13 NSVVVFSKTLCPFCV-SVKELFQQLGVT---FKAIELDKES----DGSDIQSALAEWTGQKTVPNVFI---GGKHIGGCD 81 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~-~a~~~l~~~~i~---~~~~~i~~~~----~~~~~~~~l~~~~~~~~vP~i~i---~g~~ig~~~ 81 (107)
.++++|....+.+|. |+-.+ +|+. ...+.++.+. +.....+.+.+.......|.+++ |....|..|
T Consensus 180 ~~~vv~~S~~aH~Sv~Kaa~~---lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD 256 (490)
T PLN02880 180 EKLVVYASDQTHSALQKACQI---AGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD 256 (490)
T ss_pred CCeEEEEcCCchHHHHHHHHH---cCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC
Confidence 468899888888875 34333 3553 4555665321 22344555554444556787765 445667777
Q ss_pred HHHH
Q 033962 82 STTA 85 (107)
Q Consensus 82 ~~~~ 85 (107)
.+.+
T Consensus 257 pl~e 260 (490)
T PLN02880 257 PLLE 260 (490)
T ss_pred cHHH
Confidence 6654
No 433
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=33.22 E-value=81 Score=20.60 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=29.3
Q ss_pred CChhHHHH---HHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHH
Q 033962 22 LCPFCVSV---KELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDS 82 (107)
Q Consensus 22 ~Cp~C~~a---~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~ 82 (107)
..|.+.++ +.++.+.+....+...+-..........+.+......-+.+.+=|.-+||+-.
T Consensus 10 Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A 73 (187)
T PF05728_consen 10 SSPQSFKAQALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYA 73 (187)
T ss_pred CCCCCHHHHHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHH
Confidence 34555544 56666667666555554433323333333333322222224445566666653
No 434
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=33.11 E-value=1.8e+02 Score=20.64 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=40.5
Q ss_pred CCcEEEEEeC---CChhHHHHHHHHHhcCCce--EEEEcCCCCCchHHHHHHHhhcCCCceeEEE-ECCeEE
Q 033962 12 SNSVVVFSKT---LCPFCVSVKELFQQLGVTF--KAIELDKESDGSDIQSALAEWTGQKTVPNVF-IGGKHI 77 (107)
Q Consensus 12 ~~~v~~y~~~---~Cp~C~~a~~~l~~~~i~~--~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~-i~g~~i 77 (107)
...+++|+.| +-|+|+.+.+-+-+..-+. ..-|+-.| .++...|......+.||.-. .+...+
T Consensus 118 ~Tr~~vy~qPp~~~~p~IKE~vR~~I~~A~kVIAIVMD~FTD---~dIf~DLleAa~kR~VpVYiLLD~~~~ 186 (284)
T PF07894_consen 118 VTRATVYFQPPKDGQPHIKEVVRRMIQQAQKVIAIVMDVFTD---VDIFCDLLEAANKRGVPVYILLDEQNL 186 (284)
T ss_pred CceEEEEeCCCCCCCCCHHHHHHHHHHHhcceeEEEeecccc---HHHHHHHHHHHHhcCCcEEEEechhcC
Confidence 4568898886 5578886655554433333 44455555 67777888887788899664 455544
No 435
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=33.08 E-value=1e+02 Score=17.77 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=30.2
Q ss_pred hhhHHHhhccC-CcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhh
Q 033962 2 ALPKAQETVSS-NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEW 61 (107)
Q Consensus 2 a~~~~~~~~~~-~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~ 61 (107)
|.+.++.+-.. .++.+.+......-.....-|.+.|++...-+|-.. .......+++.
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts--~~~~~~~l~~~ 77 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITS--GMAAAEYLKEH 77 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEECh--HHHHHHHHHhc
Confidence 44566666554 345666655545556677777889988543222221 13344555554
No 436
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=32.72 E-value=45 Score=23.06 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=25.5
Q ss_pred ccCCcEEEEEeCCChhHHHHHHHHHhcCCceEE
Q 033962 10 VSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKA 42 (107)
Q Consensus 10 ~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~ 42 (107)
+..+++.+|+.-.=..-..+...|.+.||+|+.
T Consensus 16 l~gC~~~LysgL~~~dA~~I~a~L~~~gI~y~~ 48 (249)
T PRK15348 16 LTACDVDLYRSLPEDEANQMLALLMQHHIDAEK 48 (249)
T ss_pred HhcCChHHHcCCCHHHHHHHHHHHHHcCCCceE
Confidence 344567788766566777899999999999975
No 437
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=32.38 E-value=1.9e+02 Score=20.83 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=35.3
Q ss_pred CcEEEEEeCC---ChhHHHHHHHHHhcCCceEEEE-cCCCCCchHHHHHHHhhcCCCceeEEEECCe
Q 033962 13 NSVVVFSKTL---CPFCVSVKELFQQLGVTFKAIE-LDKESDGSDIQSALAEWTGQKTVPNVFIGGK 75 (107)
Q Consensus 13 ~~v~~y~~~~---Cp~C~~a~~~l~~~~i~~~~~~-i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~ 75 (107)
.++.+.+.+. -+...+++..|++.++.+..++ +..++....+.+.+.......---.|=+||-
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 93 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGG 93 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4666665543 4567899999999999886554 5555554444333333222222223345654
No 438
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=32.36 E-value=87 Score=20.86 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=30.3
Q ss_pred hHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcC
Q 033962 4 PKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELD 46 (107)
Q Consensus 4 ~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~ 46 (107)
+.++++.......+|..|.=.+...+..++.+.|+.+..-+++
T Consensus 119 ~~i~~~~G~~~~~~fR~P~G~~~~~~~~~l~~~Gy~~v~w~v~ 161 (224)
T TIGR02884 119 EEFKKVTGQKEMKYFRPPRGVFSERTLAYTKELGYYTVFWSLA 161 (224)
T ss_pred HHHHHHhCCCCCCEEeCCCCCcCHHHHHHHHHcCCcEEecccc
Confidence 4455555544467787776667788999999999987655554
No 439
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=32.26 E-value=66 Score=19.92 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=27.9
Q ss_pred ChhhHHHhhccCCcEEEEEeC-----CChhHHHHHHHHHhcCCce
Q 033962 1 MALPKAQETVSSNSVVVFSKT-----LCPFCVSVKELFQQLGVTF 40 (107)
Q Consensus 1 ~a~~~~~~~~~~~~v~~y~~~-----~Cp~C~~a~~~l~~~~i~~ 40 (107)
||+..++.... .+.+++.- ++|--..+...|+++|++.
T Consensus 18 mAEa~~~~~~~--~~~v~SaG~~~~~g~~~~~~a~~~l~~~Gid~ 60 (144)
T PRK11391 18 IGERLLRKRLP--GVKVKSAGVHGLVKHPADATAADVAANHGVSL 60 (144)
T ss_pred HHHHHHHHhcC--CeEEEcccccCCCCCCCCHHHHHHHHHcCCCc
Confidence 67778877664 36666553 4566689999999999874
No 440
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=32.13 E-value=44 Score=15.68 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCCceE
Q 033962 27 VSVKELFQQLGVTFK 41 (107)
Q Consensus 27 ~~a~~~l~~~~i~~~ 41 (107)
..++.||.++||++.
T Consensus 7 ~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHcCCCCC
Confidence 467899999998764
No 441
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=32.06 E-value=1e+02 Score=20.76 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECCeEEeecHHHHH
Q 033962 28 SVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTA 85 (107)
Q Consensus 28 ~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig~~~~~~~ 85 (107)
.+..||++-.|+...+|=....-.--.++.++-.-+--+-|.+++-++.-||.+.-.+
T Consensus 130 ~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQ 187 (258)
T COG4107 130 EAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQ 187 (258)
T ss_pred HHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhH
Confidence 6778888877766544432222222334444444456778999888889999875433
No 442
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=31.70 E-value=1e+02 Score=23.07 Aligned_cols=33 Identities=6% Similarity=0.132 Sum_probs=29.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEcCC
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDK 47 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~ 47 (107)
+.+|+-|+|.-.-.++.+..+.++++..++..+
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~e 183 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGE 183 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHH
Confidence 567999999999999999999999998777754
No 443
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=31.51 E-value=1.8e+02 Score=20.11 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=27.3
Q ss_pred ccCCcEEEEEeCCChhHHHHHH-------HHHhcC---CceEEEEcCCCCCchHHHHHHHhhcC
Q 033962 10 VSSNSVVVFSKTLCPFCVSVKE-------LFQQLG---VTFKAIELDKESDGSDIQSALAEWTG 63 (107)
Q Consensus 10 ~~~~~v~~y~~~~Cp~C~~a~~-------~l~~~~---i~~~~~~i~~~~~~~~~~~~l~~~~~ 63 (107)
.....|+-+-..+|.+|..-.. -|++.| |.|..|+-... .......+|+.+..
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~-~s~~~~~~l~~r~~ 87 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE-HSRLKYWELKRRVS 87 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc-chhHHHHHHHHhCC
Confidence 3333455566789999985323 333334 45666663322 22333346665543
No 444
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=31.26 E-value=85 Score=17.64 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=15.7
Q ss_pred hcCC-CceeEEEECCeEEeecH
Q 033962 61 WTGQ-KTVPNVFIGGKHIGGCD 81 (107)
Q Consensus 61 ~~~~-~~vP~i~i~g~~ig~~~ 81 (107)
..|. ..-|..++||+.|.+.+
T Consensus 39 ~Cg~C~~~pFAlVnG~~V~A~t 60 (78)
T PF07293_consen 39 YCGPCAKKPFALVNGEIVAAET 60 (78)
T ss_pred hCcCCCCCccEEECCEEEecCC
Confidence 3443 56789999999997764
No 445
>PF11332 DUF3134: Protein of unknown function (DUF3134); InterPro: IPR021481 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=31.15 E-value=13 Score=20.63 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=12.8
Q ss_pred cCCcHHHHHhcCccccc
Q 033962 89 EGKLVPLLTEAGAVAKT 105 (107)
Q Consensus 89 ~~~l~~~L~~~~~~~~~ 105 (107)
+..|..||+..|.++.|
T Consensus 21 e~SlLdWLe~tGRLi~r 37 (73)
T PF11332_consen 21 ESSLLDWLESTGRLIAR 37 (73)
T ss_pred ccHHHHHHHHcCCcccc
Confidence 45677888888888765
No 446
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=30.87 E-value=2e+02 Score=20.55 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=27.7
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc-----CCceEEEEcCCC
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQL-----GVTFKAIELDKE 48 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~-----~i~~~~~~i~~~ 48 (107)
..+.+|+.++++-..-++.++++. ++.+.+++....
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 458899999999999888888765 466777776544
No 447
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.86 E-value=80 Score=23.55 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=23.1
Q ss_pred cEEEEEeCCChhHH------HHHHHHHhcCC-ceEEEEcC
Q 033962 14 SVVVFSKTLCPFCV------SVKELFQQLGV-TFKAIELD 46 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~------~a~~~l~~~~i-~~~~~~i~ 46 (107)
.+.+|.+.+|..|| -.+.+|++.|+ ++..+-++
T Consensus 72 n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn 111 (420)
T COG3581 72 NDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLN 111 (420)
T ss_pred ccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEee
Confidence 46677777899887 78999999884 34444443
No 448
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=30.61 E-value=8.4 Score=25.66 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=14.4
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcC
Q 033962 21 TLCPFCVSVKELFQQLGVTFKAIELD 46 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~~i~~~~~~i~ 46 (107)
-|||.|+.... +..+.++..+.+
T Consensus 12 GWCPnaka~e~---r~~~~~~~fe~~ 34 (205)
T PF07895_consen 12 GWCPNAKALET---RRRINPENFEAY 34 (205)
T ss_pred CcCcCcCcccc---ccccChHhhccc
Confidence 39999998877 344444433443
No 449
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=30.41 E-value=83 Score=19.01 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=28.3
Q ss_pred ChhhHHHhhccCCcEEEEEe-----CCChhHHHHHHHHHhcCCce
Q 033962 1 MALPKAQETVSSNSVVVFSK-----TLCPFCVSVKELFQQLGVTF 40 (107)
Q Consensus 1 ~a~~~~~~~~~~~~v~~y~~-----~~Cp~C~~a~~~l~~~~i~~ 40 (107)
||+..++..... .+.+++. ++-|--..+..+|++.|++.
T Consensus 14 mAEa~~~~~~~~-~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~ 57 (140)
T smart00226 14 MAEALFKAIVGD-RVKIDSAGTGAWVGGGADPRAVEVLKEHGIAL 57 (140)
T ss_pred HHHHHHHHhcCC-CEEEEcCcccCCCCCCCCHHHHHHHHHcCcCc
Confidence 678888876632 4666654 35666679999999999875
No 450
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=30.28 E-value=1.9e+02 Score=19.98 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=45.2
Q ss_pred HHHHHHHhcCC-ceEEEEcCCCCCchHHHHHHHhhc--CCCceeEEEECCeEEeecHHHHHHHHcCCcHHHHHhcCcc
Q 033962 28 SVKELFQQLGV-TFKAIELDKESDGSDIQSALAEWT--GQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 102 (107)
Q Consensus 28 ~a~~~l~~~~i-~~~~~~i~~~~~~~~~~~~l~~~~--~~~~vP~i~i~g~~ig~~~~~~~~~~~~~l~~~L~~~~~~ 102 (107)
..--+|++++. +.....+...|......+.+.+.. +..-.|..++.|.+... -....++.++...|+++|..
T Consensus 157 cLd~~~~~~~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~n---DMasddedswk~il~~~G~~ 231 (265)
T COG4822 157 CLDHVLDEYGFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKN---DMASDDEDSWKNILEKNGFK 231 (265)
T ss_pred HHHHHHHhcCCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhh---hhcccchHHHHHHHHhCCce
Confidence 34556778888 567777888877777776665432 24567988988875421 01112345677778777754
No 451
>PRK13669 hypothetical protein; Provisional
Probab=30.17 E-value=98 Score=17.45 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=16.0
Q ss_pred hhcCC-CceeEEEECCeEEeecH
Q 033962 60 EWTGQ-KTVPNVFIGGKHIGGCD 81 (107)
Q Consensus 60 ~~~~~-~~vP~i~i~g~~ig~~~ 81 (107)
...|. ..-|..++||+.+.+.+
T Consensus 38 s~CG~C~~~~FAlVng~~V~a~t 60 (78)
T PRK13669 38 GYCGICSEGLFALVNGEVVEGET 60 (78)
T ss_pred hhCcCcccCceEEECCeEeecCC
Confidence 34453 45689999999997765
No 452
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=30.02 E-value=1e+02 Score=16.87 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=20.7
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCc
Q 033962 11 SSNSVVVFSKTLCPFCVSVKELFQQLGVT 39 (107)
Q Consensus 11 ~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~ 39 (107)
...+|++|.. .+..+..+...|.+.|.+
T Consensus 55 ~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 55 RDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred CCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 4567888866 677777888888888764
No 453
>CHL00195 ycf46 Ycf46; Provisional
Probab=29.78 E-value=1.2e+02 Score=23.19 Aligned_cols=36 Identities=6% Similarity=0.132 Sum_probs=31.4
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCC
Q 033962 12 SNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDK 47 (107)
Q Consensus 12 ~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~ 47 (107)
...|.+|+-|+|+...-|+.+-.+.+.++..++...
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~ 294 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGK 294 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHH
Confidence 456999999999999999999999999988887643
No 454
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=29.67 E-value=27 Score=25.02 Aligned_cols=43 Identities=9% Similarity=0.266 Sum_probs=27.0
Q ss_pred hHHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCC
Q 033962 4 PKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDK 47 (107)
Q Consensus 4 ~~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~ 47 (107)
+.+++..+.. -.-|+-|-|.++..+..+|.+.|+.|..+|-..
T Consensus 155 ~~~~~~FG~~-P~G~W~pE~a~~~~l~~~l~~~Gi~~~i~d~~~ 197 (360)
T PF03065_consen 155 EYFKKHFGRR-PRGFWLPECAYSPGLEEILAEAGIRYTILDGHQ 197 (360)
T ss_dssp HHHHHHHSS---SBEE-GGG-B-TTHHHHHHHTT--EEEEECHH
T ss_pred HHHHHHhCCC-CCceECcccccCHHHHHHHHHcCCEEEEECcHH
Confidence 3445555543 355667889999999999999999999888543
No 455
>PRK13947 shikimate kinase; Provisional
Probab=29.63 E-value=1.1e+02 Score=18.92 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=26.2
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceEEEE
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIE 44 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~ 44 (107)
..|++-+.++|.-..-++.+-+.++++|...|
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 35888899999999999999999998774433
No 456
>COG5204 SPT4 Transcription elongation factor SPT4 [Transcription]
Probab=29.60 E-value=15 Score=21.63 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=10.8
Q ss_pred EEEeCCChhHHHH
Q 033962 17 VFSKTLCPFCVSV 29 (107)
Q Consensus 17 ~y~~~~Cp~C~~a 29 (107)
.|..++||+|...
T Consensus 23 ~F~~dGCpNc~~l 35 (112)
T COG5204 23 GFRKDGCPNCPML 35 (112)
T ss_pred cccccCCCCCccc
Confidence 5888999999854
No 457
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=29.52 E-value=1.4e+02 Score=20.85 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=24.0
Q ss_pred eCCChhHHHHHHHHHhc--CCceEEEEcCCC
Q 033962 20 KTLCPFCVSVKELFQQL--GVTFKAIELDKE 48 (107)
Q Consensus 20 ~~~Cp~C~~a~~~l~~~--~i~~~~~~i~~~ 48 (107)
.-+|+.+.+++.+++.. +..|.-+|++.+
T Consensus 69 ELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~ 99 (301)
T TIGR03438 69 ELGSGSSRKTRLLLDALRQPARYVPIDISAD 99 (301)
T ss_pred ecCCCcchhHHHHHHhhccCCeEEEEECCHH
Confidence 56899999999999987 577888888764
No 458
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=29.51 E-value=80 Score=15.75 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=12.5
Q ss_pred ChhHHHHHHHHHhcCCceE
Q 033962 23 CPFCVSVKELFQQLGVTFK 41 (107)
Q Consensus 23 Cp~C~~a~~~l~~~~i~~~ 41 (107)
+..-.+...||+++||+|.
T Consensus 14 ~k~~~~Q~~~L~~~Gi~~~ 32 (47)
T PF13986_consen 14 YKRPSKQIRWLRRNGIPFV 32 (47)
T ss_pred CCCHHHHHHHHHHCCCeeE
Confidence 3344566777888887764
No 459
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=29.27 E-value=1.7e+02 Score=19.22 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=45.1
Q ss_pred HHHhhccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEE
Q 033962 5 KAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNV 70 (107)
Q Consensus 5 ~~~~~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i 70 (107)
..+.......+.+|-+++-.|-..++-.|++.+.|+-.+..|-.--.+.....+....-...+|..
T Consensus 54 ~t~~~~~~~gv~vi~tpG~GYv~Dl~~al~~l~~P~lvvsaDLp~l~~~~i~~vi~~~~~~~~p~~ 119 (177)
T COG2266 54 KTKEYLESVGVKVIETPGEGYVEDLRFALESLGTPILVVSADLPFLNPSIIDSVIDAAASVEVPIV 119 (177)
T ss_pred hHHHHHHhcCceEEEcCCCChHHHHHHHHHhcCCceEEEecccccCCHHHHHHHHHHHhhccCcee
Confidence 345555566688888888899999999999999888777776654445555555555443445544
No 460
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=29.03 E-value=17 Score=19.11 Aligned_cols=9 Identities=44% Similarity=1.102 Sum_probs=6.7
Q ss_pred eCCChhHHH
Q 033962 20 KTLCPFCVS 28 (107)
Q Consensus 20 ~~~Cp~C~~ 28 (107)
+++||+|.+
T Consensus 39 YngCPfC~~ 47 (55)
T PF14447_consen 39 YNGCPFCGT 47 (55)
T ss_pred ccCCCCCCC
Confidence 378999963
No 461
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.72 E-value=2.1e+02 Score=20.17 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCce
Q 033962 24 PFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTV 67 (107)
Q Consensus 24 p~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~v 67 (107)
.|=+...+..++.|+.++.+++..+....+..+.+.+.+....+
T Consensus 47 ~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V 90 (282)
T PRK14180 47 TYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSV 90 (282)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 35556777788899999999999887767777788777654433
No 462
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=28.66 E-value=2.3e+02 Score=20.49 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=29.9
Q ss_pred CcEEEEEeC----CChhHHHHHHHHHhcCCceEEE-EcCCCCCchHHH
Q 033962 13 NSVVVFSKT----LCPFCVSVKELFQQLGVTFKAI-ELDKESDGSDIQ 55 (107)
Q Consensus 13 ~~v~~y~~~----~Cp~C~~a~~~l~~~~i~~~~~-~i~~~~~~~~~~ 55 (107)
.++.+.+.+ ..+...+++..|++.++++..+ ++..++......
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~ 73 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVM 73 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHH
Confidence 466666543 4678889999999999998765 466565544443
No 463
>PF02288 Dehydratase_MU: Dehydratase medium subunit; InterPro: IPR003208 This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.; PDB: 2D0P_B 2D0O_D 1IWP_E 1MMF_B 1NBW_B 3AUJ_B 1UC5_B 1IWB_B 1EEX_E 1DIO_B ....
Probab=28.64 E-value=1.4e+02 Score=17.97 Aligned_cols=38 Identities=11% Similarity=0.258 Sum_probs=24.1
Q ss_pred cEEEEEeCCChhHHHHHH---HHHhcCCceEEEEcCCCCCc
Q 033962 14 SVVVFSKTLCPFCVSVKE---LFQQLGVTFKAIELDKESDG 51 (107)
Q Consensus 14 ~v~~y~~~~Cp~C~~a~~---~l~~~~i~~~~~~i~~~~~~ 51 (107)
-|.+|..+.|..-..++. -+++.|++|..+.+....+.
T Consensus 4 ai~i~~~~~~~~~~~lrev~aGIEEEGip~~~~~~~~~~d~ 44 (112)
T PF02288_consen 4 AIGIYVSKTIEGSDVLREVLAGIEEEGIPYRVVRVSDTSDV 44 (112)
T ss_dssp TECCCEECTTTCHHHHHHHHHHHHCTT-EEEEEEECSSSSH
T ss_pred EEEEEecCCCcchhHHHHHHhHhcccCCCeEEEeecCcccH
Confidence 466777777776444444 44788999999666555443
No 464
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=28.63 E-value=2e+02 Score=21.66 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=29.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcC
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELD 46 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~ 46 (107)
..+.+|+-|+|.-..-++.+..+.+++|..++..
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~ 122 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGS 122 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHH
Confidence 3589999999999999999999999998776643
No 465
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.52 E-value=2.2e+02 Score=20.23 Aligned_cols=45 Identities=9% Similarity=0.205 Sum_probs=34.5
Q ss_pred CChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCc
Q 033962 22 LCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKT 66 (107)
Q Consensus 22 ~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 66 (107)
...|-+...+..++.|+.++.+++..+....+..+.+.+.+....
T Consensus 45 s~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 89 (295)
T PRK14174 45 SQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPD 89 (295)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 344556777888899999999999988776777778877765443
No 466
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair]
Probab=28.17 E-value=2.3e+02 Score=20.28 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE
Q 033962 25 FCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI 72 (107)
Q Consensus 25 ~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i 72 (107)
||+....++...+...+.+-||.......+...+.+......-|..|.
T Consensus 172 H~~ai~~ll~~~~~~~~~ivIDqFa~~~~~~~yl~k~~~~~~~p~~f~ 219 (297)
T COG1039 172 HNQAIQNLLPQKGAQPEFIVIDQFASSENYKNYLQKETNKFSEPVLFL 219 (297)
T ss_pred HHHHHHHHHHhccCCCeEEEeccccchhHHHHHHHhhccCCCCceeee
Confidence 555666666666778888889998777777778888877778888875
No 467
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=28.12 E-value=60 Score=19.17 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=12.8
Q ss_pred CceeEEEECCeEEeecH
Q 033962 65 KTVPNVFIGGKHIGGCD 81 (107)
Q Consensus 65 ~~vP~i~i~g~~ig~~~ 81 (107)
...=.+|+||.++|.+.
T Consensus 62 ~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 62 AFRASVWVNGWFLGSYW 78 (111)
T ss_dssp TEEEEEEETTEEEEEEE
T ss_pred ceEEEEEECCEEeeeec
Confidence 33447899999999864
No 468
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.12 E-value=2.2e+02 Score=20.12 Aligned_cols=45 Identities=4% Similarity=0.047 Sum_probs=34.6
Q ss_pred ChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCce
Q 033962 23 CPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTV 67 (107)
Q Consensus 23 Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~v 67 (107)
-.|=+...+..++.|+.++.+++..+....+..+.+.+.+....+
T Consensus 47 ~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V 91 (285)
T PRK14189 47 QVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKI 91 (285)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCC
Confidence 345667788889999999999999887667777788877654433
No 469
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.04 E-value=2.2e+02 Score=20.47 Aligned_cols=58 Identities=12% Similarity=0.230 Sum_probs=38.6
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEE-CCeEEeecHHHHHHHHc
Q 033962 21 TLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFI-GGKHIGGCDSTTALHRE 89 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i-~g~~ig~~~~~~~~~~~ 89 (107)
.-|+.|-.+..+++=.+-+.. +++...+ .+++.+.+|.+.. +|+.++++..+...+..
T Consensus 15 tid~~sL~~l~y~kl~~~~l~-v~~ssN~----------~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k 73 (313)
T KOG3028|consen 15 TIDPDSLAALIYLKLAGAPLK-VVVSSNP----------WRSPSGKLPYLITDNGTKVAGPVKIVQFLKK 73 (313)
T ss_pred CcChhHHHHHHHHHHhCCCce-eEeecCC----------CCCCCCCCCeEEecCCceeccHHHHHHHHHH
Confidence 358999999988887773322 2222221 1345566999966 66999999988765543
No 470
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=27.91 E-value=58 Score=18.52 Aligned_cols=18 Identities=33% Similarity=0.735 Sum_probs=16.7
Q ss_pred CChhHHHHHHHHHhcCCc
Q 033962 22 LCPFCVSVKELFQQLGVT 39 (107)
Q Consensus 22 ~Cp~C~~a~~~l~~~~i~ 39 (107)
.|+-|+.|-.+|.+.|+.
T Consensus 28 CC~GC~~V~~~i~~~gL~ 45 (88)
T PF12156_consen 28 CCPGCQAVYQLIHENGLE 45 (88)
T ss_pred ccHHHHHHHHHHHHcchH
Confidence 789999999999999985
No 471
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=27.90 E-value=41 Score=15.47 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=10.8
Q ss_pred CChhHHHHHHHHHh
Q 033962 22 LCPFCVSVKELFQQ 35 (107)
Q Consensus 22 ~Cp~C~~a~~~l~~ 35 (107)
.|..|..+..++++
T Consensus 3 ~C~~C~~~v~~i~~ 16 (39)
T PF05184_consen 3 ECDICKFVVKEIEK 16 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH
Confidence 48889888877765
No 472
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.80 E-value=2.2e+02 Score=20.08 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=34.5
Q ss_pred ChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCce
Q 033962 23 CPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTV 67 (107)
Q Consensus 23 Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~v 67 (107)
-.|-+.-.+..++.|+.++.+++..+....+..+.+.+.+....+
T Consensus 45 ~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V 89 (282)
T PRK14169 45 EVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDV 89 (282)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 345567777888899999999999887767788888877664433
No 473
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=27.68 E-value=1.1e+02 Score=17.96 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=24.5
Q ss_pred CceeEEE-ECCeEEeecHHHHHHHHcCCcHHHHHhcCc
Q 033962 65 KTVPNVF-IGGKHIGGCDSTTALHREGKLVPLLTEAGA 101 (107)
Q Consensus 65 ~~vP~i~-i~g~~ig~~~~~~~~~~~~~l~~~L~~~~~ 101 (107)
..||.+| .+...+-|.+++...+.-. ...|+..+.
T Consensus 3 ~dV~v~~~~~~v~WvgaDEil~IL~lp--~s~l~~iP~ 38 (97)
T PF04512_consen 3 TDVPVFFDVDMVLWVGADEILSILRLP--CSALQSIPR 38 (97)
T ss_pred CCeeEEEecCceEEecHHHHHHHhCCC--HHHHHHcCH
Confidence 3588999 7888888899888776544 445554443
No 474
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=27.57 E-value=43 Score=18.49 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=13.5
Q ss_pred CceeEEEECCeEEeecH
Q 033962 65 KTVPNVFIGGKHIGGCD 81 (107)
Q Consensus 65 ~~vP~i~i~g~~ig~~~ 81 (107)
..-|.+.+||+.+++.+
T Consensus 53 ~~gP~~~v~~~~~~~~~ 69 (80)
T cd03081 53 ACSPAAMIDGEVHGRVD 69 (80)
T ss_pred CCCCEEEECCEEECCCC
Confidence 45689999999887764
No 475
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=27.46 E-value=1.4e+02 Score=17.59 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhcCCceEE--EEcCCC---------------CCchHHHHHHHhhcCCCceeEEEECCeEEe
Q 033962 24 PFCVSVKELFQQLGVTFKA--IELDKE---------------SDGSDIQSALAEWTGQKTVPNVFIGGKHIG 78 (107)
Q Consensus 24 p~C~~a~~~l~~~~i~~~~--~~i~~~---------------~~~~~~~~~l~~~~~~~~vP~i~i~g~~ig 78 (107)
--..+++.+++++|++++. ..+... |+-.-..+.+++.....++|...++....|
T Consensus 16 lla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQIPPQAYI 87 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEeCHHHcC
Confidence 4556888999999988654 222110 111223456666677778999999887666
No 476
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=27.38 E-value=94 Score=19.27 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=28.3
Q ss_pred ChhhHHHhhccCCcEEEEEeC-----CChhHHHHHHHHHhcCCceE
Q 033962 1 MALPKAQETVSSNSVVVFSKT-----LCPFCVSVKELFQQLGVTFK 41 (107)
Q Consensus 1 ~a~~~~~~~~~~~~v~~y~~~-----~Cp~C~~a~~~l~~~~i~~~ 41 (107)
||+..++..+. ..+.+++.- +-+--..+..+|.++|++..
T Consensus 18 mAE~l~~~~~~-~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~ 62 (139)
T COG0394 18 MAEALLRHLAP-DNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDIS 62 (139)
T ss_pred HHHHHHHHhcc-CCeEEECCccCCCCCCCCCHHHHHHHHHcCCCcC
Confidence 67777787776 567777653 33445688888999998764
No 477
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=26.94 E-value=46 Score=25.31 Aligned_cols=31 Identities=6% Similarity=0.252 Sum_probs=26.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEEc
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIEL 45 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i 45 (107)
-.=|+.|-|.|-.-+..+|.+.|+.|..+|-
T Consensus 178 P~GiWlPEcay~pgie~~l~~~Gi~yf~vdg 208 (504)
T COG1543 178 PKGIWLPECAYAPGIERILKDAGIEYFFVDG 208 (504)
T ss_pred CCceechhhccccchHHHHHhcCceEEEecc
Confidence 3446788999999999999999999999883
No 478
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.87 E-value=2.3e+02 Score=20.00 Aligned_cols=44 Identities=14% Similarity=0.332 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCce
Q 033962 24 PFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTV 67 (107)
Q Consensus 24 p~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~v 67 (107)
.|-+.-.+..++.|+.++.+++..+....+..+.+.+.+....+
T Consensus 48 ~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V 91 (286)
T PRK14175 48 SYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSV 91 (286)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 35567777788899999999999887667777788777654433
No 479
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=26.86 E-value=2.5e+02 Score=20.31 Aligned_cols=43 Identities=5% Similarity=0.245 Sum_probs=28.5
Q ss_pred CcEEEEEeCCC---hhHHHHHHHHHhcCCceEEEE-cCCCCCchHHH
Q 033962 13 NSVVVFSKTLC---PFCVSVKELFQQLGVTFKAIE-LDKESDGSDIQ 55 (107)
Q Consensus 13 ~~v~~y~~~~C---p~C~~a~~~l~~~~i~~~~~~-i~~~~~~~~~~ 55 (107)
.++.+.+.+.. +...++...|+..++++..++ +..++......
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~ 75 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVK 75 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHH
Confidence 45666555444 567789999999999887664 55565544443
No 480
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=26.78 E-value=80 Score=18.89 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=19.1
Q ss_pred CCChhHHHHHHHHHh-cCCceEEEEcC
Q 033962 21 TLCPFCVSVKELFQQ-LGVTFKAIELD 46 (107)
Q Consensus 21 ~~Cp~C~~a~~~l~~-~~i~~~~~~i~ 46 (107)
.-|..|+.+.+++.. .+..+...|..
T Consensus 84 RvC~DCH~~~K~iS~~~~ReIiVRD~~ 110 (116)
T PF14432_consen 84 RVCGDCHSFIKFISKITGREIIVRDSN 110 (116)
T ss_pred ccchHHHHHHHHHHHHHCeEEEEeCCC
Confidence 579999999999876 36566665543
No 481
>PLN02790 transketolase
Probab=26.63 E-value=3.3e+02 Score=21.61 Aligned_cols=37 Identities=3% Similarity=0.099 Sum_probs=28.8
Q ss_pred CcEEEEEe-CCChhHHHHHHHHHhcCCceEEEEcCCCC
Q 033962 13 NSVVVFSK-TLCPFCVSVKELFQQLGVTFKAIELDKES 49 (107)
Q Consensus 13 ~~v~~y~~-~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~ 49 (107)
..+++... +-...|.+|...|.+.|+....+++..-.
T Consensus 541 ~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ik 578 (654)
T PLN02790 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWE 578 (654)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccc
Confidence 45666543 55678999999999999999999987653
No 482
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=26.53 E-value=3.5e+02 Score=22.23 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=31.3
Q ss_pred ccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCC
Q 033962 10 VSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKE 48 (107)
Q Consensus 10 ~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~ 48 (107)
....+|.+|+. +.-.+..+...|.+.++++...+-+.+
T Consensus 438 ~~g~pvLI~t~-si~~se~ls~~L~~~gi~~~~Lna~~~ 475 (796)
T PRK12906 438 AKGQPVLVGTV-AIESSERLSHLLDEAGIPHAVLNAKNH 475 (796)
T ss_pred hCCCCEEEEeC-cHHHHHHHHHHHHHCCCCeeEecCCcH
Confidence 35677888875 578899999999999999998888765
No 483
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.48 E-value=2.4e+02 Score=19.96 Aligned_cols=45 Identities=7% Similarity=0.195 Sum_probs=34.4
Q ss_pred ChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCce
Q 033962 23 CPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTV 67 (107)
Q Consensus 23 Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~v 67 (107)
..|=+...+..++.|+.++.+++..+....+..+.+.+.+....+
T Consensus 47 ~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V 91 (284)
T PRK14190 47 HSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRI 91 (284)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 345567778888999999999999887767777788877654433
No 484
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.42 E-value=1.1e+02 Score=22.80 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCceEEEEcCCCCCchHH-HHHHHhhcCCCceeEEEECCeEE
Q 033962 27 VSVKELFQQLGVTFKAIELDKESDGSDI-QSALAEWTGQKTVPNVFIGGKHI 77 (107)
Q Consensus 27 ~~a~~~l~~~~i~~~~~~i~~~~~~~~~-~~~l~~~~~~~~vP~i~i~g~~i 77 (107)
.....+.++++++=...-.......-.. ...+++.....++|.+.++|.+.
T Consensus 351 ~~l~~li~e~~vDGVI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ietD~~ 402 (430)
T TIGR03191 351 EMMLNIARDWNVDGCMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFEGNMG 402 (430)
T ss_pred HHHHHHHHHHCCCEEEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEECCCC
Confidence 3455555666666544444443322211 11222222234677777766543
No 485
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=26.36 E-value=2.2e+02 Score=19.54 Aligned_cols=59 Identities=12% Similarity=0.154 Sum_probs=37.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCceeEEEECC
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGG 74 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~vP~i~i~g 74 (107)
..+++|+-++|.-..-++.+..+.+.++...+.............+.. ...-..+|+|+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vl~iDE 89 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTN---LEEGDVLFIDE 89 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHh---cccCCEEEEeh
Confidence 348899999999999999999998888766554332222233333322 12234667766
No 486
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.10 E-value=2.5e+02 Score=20.03 Aligned_cols=46 Identities=11% Similarity=0.273 Sum_probs=34.8
Q ss_pred CChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCce
Q 033962 22 LCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTV 67 (107)
Q Consensus 22 ~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~v 67 (107)
...|-+...+..++.|+.++.+++..+....+..+.+.+.+....+
T Consensus 45 s~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V 90 (297)
T PRK14167 45 SETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDV 90 (297)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 3446667778888999999999999887667777788777654433
No 487
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.98 E-value=2.4e+02 Score=19.92 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=35.2
Q ss_pred CChhHHHHHHHHHhcCCceEEEEcCCCCCchHHHHHHHhhcCCCc
Q 033962 22 LCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKT 66 (107)
Q Consensus 22 ~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 66 (107)
...|-+...+..++.|+.++.+++..+....+..+.+.+.+....
T Consensus 45 s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 89 (285)
T PRK14191 45 SQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQN 89 (285)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 445667778888899999999999988776778888887765443
No 488
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=25.86 E-value=64 Score=20.08 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=13.9
Q ss_pred CceeEEEECCeEEeecH
Q 033962 65 KTVPNVFIGGKHIGGCD 81 (107)
Q Consensus 65 ~~vP~i~i~g~~ig~~~ 81 (107)
..-|.+.+||+.++..+
T Consensus 117 ~~aP~v~V~~~~y~~vt 133 (145)
T PF01257_consen 117 DQAPVVMVDGEWYGNVT 133 (145)
T ss_dssp GGSSEEEECCCEEESSS
T ss_pred CCCCEEEECCEEECCCC
Confidence 35799999999988775
No 489
>PTZ00494 tuzin-like protein; Provisional
Probab=25.66 E-value=3.3e+02 Score=21.35 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=31.0
Q ss_pred CcEEEEEe-CCChhHHHHHHHHHhcCCceEEEEcCCCCC
Q 033962 13 NSVVVFSK-TLCPFCVSVKELFQQLGVTFKAIELDKESD 50 (107)
Q Consensus 13 ~~v~~y~~-~~Cp~C~~a~~~l~~~~i~~~~~~i~~~~~ 50 (107)
..|++|+. .+|..|--.+..+.+.+.+-.++||...++
T Consensus 395 PRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~ED 433 (664)
T PTZ00494 395 PRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTED 433 (664)
T ss_pred CcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcc
Confidence 34776654 799999999999999999999999977653
No 490
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=25.61 E-value=2.6e+02 Score=20.10 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=36.2
Q ss_pred CcEEEEEeC---CChhHHHHHHHHHhcCCceEEEE-cCCCCCchHHHHHHHhhcCCCceeEEE-ECCe
Q 033962 13 NSVVVFSKT---LCPFCVSVKELFQQLGVTFKAIE-LDKESDGSDIQSALAEWTGQKTVPNVF-IGGK 75 (107)
Q Consensus 13 ~~v~~y~~~---~Cp~C~~a~~~l~~~~i~~~~~~-i~~~~~~~~~~~~l~~~~~~~~vP~i~-i~g~ 75 (107)
.++.+.+.+ ..+...+++..|++.++++..++ +..++...... +..+.......-.|+ +||-
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~-~~~~~~~~~~~d~IIaiGGG 91 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVE-AGLAAYRAGGCDGVIAFGGG 91 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHH-HHHHHHHhcCCCEEEEeCCc
Confidence 455555443 35577899999999999887664 55555544443 333333333334443 6663
No 491
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=25.58 E-value=16 Score=22.11 Aligned_cols=15 Identities=20% Similarity=0.632 Sum_probs=12.7
Q ss_pred CChhHHHHHHHHHhc
Q 033962 22 LCPFCVSVKELFQQL 36 (107)
Q Consensus 22 ~Cp~C~~a~~~l~~~ 36 (107)
.||.|.+....|.+-
T Consensus 71 ~CP~C~K~TKmLGr~ 85 (114)
T PF11023_consen 71 ECPNCGKQTKMLGRV 85 (114)
T ss_pred ECCCCCChHhhhchh
Confidence 399999999999764
No 492
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=25.57 E-value=1.2e+02 Score=17.96 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=24.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCceEEEE
Q 033962 15 VVVFSKTLCPFCVSVKELFQQLGVTFKAIE 44 (107)
Q Consensus 15 v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~ 44 (107)
|++.+.++|.-..-++.+.+.+++++...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 577888999999999999999998875444
No 493
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.51 E-value=1.7e+02 Score=20.46 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=27.9
Q ss_pred hhHHHhhccCCcEEEEEeCCC-hhHHHHHHHHHhcCCceEE
Q 033962 3 LPKAQETVSSNSVVVFSKTLC-PFCVSVKELFQQLGVTFKA 42 (107)
Q Consensus 3 ~~~~~~~~~~~~v~~y~~~~C-p~C~~a~~~l~~~~i~~~~ 42 (107)
.+.+++++...+|..+..+.| +.|..+..++++.++++..
T Consensus 59 ~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~ 99 (347)
T cd06340 59 ATEAERLITEEGVVALVGAYQSAVTLAASQVAERYGVPFVV 99 (347)
T ss_pred HHHHHHHhccCCceEEecccchHhHHHHHHHHHHhCCCEEe
Confidence 345666676656665555656 5688888999999888753
No 494
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=25.48 E-value=2.7e+02 Score=20.22 Aligned_cols=42 Identities=7% Similarity=0.162 Sum_probs=28.3
Q ss_pred CcEEEEEeCC----ChhHHHHHHHHHhcCCceEEEE-cCCCCCchHH
Q 033962 13 NSVVVFSKTL----CPFCVSVKELFQQLGVTFKAIE-LDKESDGSDI 54 (107)
Q Consensus 13 ~~v~~y~~~~----Cp~C~~a~~~l~~~~i~~~~~~-i~~~~~~~~~ 54 (107)
.++.+.+.+. ++...++...|++.++++..++ +..++.....
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v 73 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQV 73 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHH
Confidence 4566665543 6667899999999999887664 5555543333
No 495
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=25.32 E-value=1.1e+02 Score=18.27 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=27.1
Q ss_pred ChhhHHHhhccCCcEEEEEeC--CChhHHHHHHHHHhcCCce
Q 033962 1 MALPKAQETVSSNSVVVFSKT--LCPFCVSVKELFQQLGVTF 40 (107)
Q Consensus 1 ~a~~~~~~~~~~~~v~~y~~~--~Cp~C~~a~~~l~~~~i~~ 40 (107)
||+..++.... ..+.+++.- ..+--..+...|++.|++.
T Consensus 16 mAEa~~~~~~~-~~~~v~SAG~~~~~~~p~a~~~l~e~Gid~ 56 (126)
T TIGR02689 16 MAEGFAKTLGA-GNIAVTSAGLEVSRVHPTAIEVMSEIGIDI 56 (126)
T ss_pred HHHHHHHHhcC-CCEEEEcCcCCCCCCCHHHHHHHHHhCCCc
Confidence 67777777654 357777552 2455668899999999865
No 496
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=25.31 E-value=1.3e+02 Score=22.71 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=30.9
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcC
Q 033962 11 SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELD 46 (107)
Q Consensus 11 ~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~ 46 (107)
.+..|.+++-++|.-..-++.+-...+.+|..+|..
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 346799999999999999999999999999877754
No 497
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=25.30 E-value=3.8e+02 Score=21.89 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=31.5
Q ss_pred hccCCcEEEEEeCCChhHHHHHHHHHhcCCceEEEEcCCC
Q 033962 9 TVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKE 48 (107)
Q Consensus 9 ~~~~~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i~~~ 48 (107)
+....+|.+|+. +...+..+...|.+.+++...++-+.+
T Consensus 402 ~~~grpvLV~t~-si~~se~ls~~L~~~gi~~~~Lna~q~ 440 (745)
T TIGR00963 402 HAKGQPVLVGTT-SVEKSELLSNLLKERGIPHNVLNAKNH 440 (745)
T ss_pred HhcCCCEEEEeC-cHHHHHHHHHHHHHcCCCeEEeeCChH
Confidence 345678888875 577799999999999999988887743
No 498
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=25.23 E-value=1.1e+02 Score=16.91 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=14.3
Q ss_pred EEEECCeEEeecHHHHHHHHcCCcHHHHHhcCcc
Q 033962 69 NVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 102 (107)
Q Consensus 69 ~i~i~g~~ig~~~~~~~~~~~~~l~~~L~~~~~~ 102 (107)
.|.+||+.+.... ...|.+.|..+|.-
T Consensus 5 ~i~idG~~v~~~~-------G~til~al~~~gi~ 31 (82)
T PF13510_consen 5 TITIDGKPVEVPP-------GETILEALLAAGID 31 (82)
T ss_dssp EEEETTEEEEEEE-------T-BHHHHHHHTT--
T ss_pred EEEECCEEEEEcC-------CCHHHHHHHHCCCe
Confidence 4577888775543 33455555555543
No 499
>PRK04040 adenylate kinase; Provisional
Probab=25.18 E-value=1.8e+02 Score=18.84 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=23.5
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCceEEEEc
Q 033962 13 NSVVVFSKTLCPFCVSVKELFQQLGVTFKAIEL 45 (107)
Q Consensus 13 ~~v~~y~~~~Cp~C~~a~~~l~~~~i~~~~~~i 45 (107)
..|.+++.|+|.-..-++.+.+.+...+..++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 347788999999998888888887323433443
No 500
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=25.02 E-value=1.2e+02 Score=17.04 Aligned_cols=20 Identities=10% Similarity=0.350 Sum_probs=0.0
Q ss_pred CcEEEEEe--CCChhHHHHHHHH
Q 033962 13 NSVVVFSK--TLCPFCVSVKELF 33 (107)
Q Consensus 13 ~~v~~y~~--~~Cp~C~~a~~~l 33 (107)
...++|++ | |+.|..+..+.
T Consensus 72 ~~~~lyvt~eP-C~~C~~ai~~~ 93 (102)
T PF00383_consen 72 KGCTLYVTLEP-CGMCAMAIVHA 93 (102)
T ss_dssp TTEEEEEEE---BHHHHHHHHHH
T ss_pred cCcccccCCCC-HHHHHHHHHHH
Done!