BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033963
MNAFKAFKACVPIEWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
MLQQVKRLVVIETEEMYKARKEKLANHQALRPPMVINHLPSSTTQST

High Scoring Gene Products

Symbol, full name Information P value
AT5G55140 protein from Arabidopsis thaliana 4.0e-35
CHY_2291
ribosomal protein L30
protein from Carboxydothermus hydrogenoformans Z-2901 1.6e-06
BA_0128
ribosomal protein L30
protein from Bacillus anthracis str. Ames 4.3e-06
GSU_2839
ribosomal protein L30
protein from Geobacter sulfurreducens PCA 4.3e-06
CBU_0256
ribosomal protein L30p/L7e
protein from Coxiella burnetii RSA 493 1.5e-05
CPS_0619
ribosomal protein L30
protein from Colwellia psychrerythraea 34H 3.9e-05
rpmD
50S ribosomal protein L30
protein from Vibrio cholerae O1 biovar El Tor str. N16961 0.00017
VC_2578
ribosomal protein L30
protein from Vibrio cholerae O1 biovar El Tor 0.00017
rpmD
50S ribosomal subunit protein L30
protein from Escherichia coli K-12 0.00027
SO_0249
ribosomal protein L30
protein from Shewanella oneidensis MR-1 0.00093

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033963
        (107 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2161645 - symbol:AT5G55140 species:3702 "Arabi...   380  4.0e-35   1
TIGR_CMR|CHY_2291 - symbol:CHY_2291 "ribosomal protein L3...   110  1.6e-06   1
TIGR_CMR|BA_0128 - symbol:BA_0128 "ribosomal protein L30"...   106  4.3e-06   1
TIGR_CMR|GSU_2839 - symbol:GSU_2839 "ribosomal protein L3...   106  4.3e-06   1
TIGR_CMR|CBU_0256 - symbol:CBU_0256 "ribosomal protein L3...   101  1.5e-05   1
TIGR_CMR|CPS_0619 - symbol:CPS_0619 "ribosomal protein L3...    97  3.9e-05   1
UNIPROTKB|Q9KP02 - symbol:rpmD "50S ribosomal protein L30...    91  0.00017   1
TIGR_CMR|VC_2578 - symbol:VC_2578 "ribosomal protein L30"...    91  0.00017   1
UNIPROTKB|P0AG51 - symbol:rpmD "50S ribosomal subunit pro...    89  0.00027   1
TIGR_CMR|SO_0249 - symbol:SO_0249 "ribosomal protein L30"...    84  0.00093   1


>TAIR|locus:2161645 [details] [associations]
            symbol:AT5G55140 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0015934 "large ribosomal subunit"
            evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis" evidence=ISS]
            [GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA]
            InterPro:IPR005996 InterPro:IPR016082 Pfam:PF00327 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0006412 GO:GO:0003735 GO:GO:0015934
            HOGENOM:HOG000039916 KO:K02907 Gene3D:3.30.1390.20 HAMAP:MF_01371_B
            SUPFAM:SSF55129 TIGRFAMs:TIGR01308 EMBL:AY088696 EMBL:BT024560
            IPI:IPI00544021 RefSeq:NP_568821.1 UniGene:At.21079
            ProteinModelPortal:Q8L908 SMR:Q8L908 STRING:Q8L908 PaxDb:Q8L908
            PRIDE:Q8L908 EnsemblPlants:AT5G55140.1 GeneID:835607
            KEGG:ath:AT5G55140 TAIR:At5g55140 eggNOG:NOG259614
            InParanoid:Q8L908 OMA:LRLRKCN PhylomeDB:Q8L908
            ProtClustDB:CLSN2690021 Genevestigator:Q8L908 Uniprot:Q8L908
        Length = 109

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 70/106 (66%), Positives = 89/106 (83%)

Query:     1 MNAFKAFKACVPIEWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
             M+ F+AFKA VPIEWS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RG
Sbjct:     1 MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query:    61 MLQQVKRLVVIETEEMYKARKEKLANHQALRPPMVINHLPSSTTQS 106
             M+ QVKR+VV+ETEEMY ARKE  ANH+ALRPP+V++H   +T  S
Sbjct:    61 MIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSHSSPATDSS 106


>TIGR_CMR|CHY_2291 [details] [associations]
            symbol:CHY_2291 "ribosomal protein L30" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
            constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
            evidence=ISS] InterPro:IPR005996 PIRSF:PIRSF002211
            InterPro:IPR016082 Pfam:PF00327 EMBL:CP000141
            GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0003735 GO:GO:0015934
            eggNOG:COG1841 HOGENOM:HOG000039916 KO:K02907 Gene3D:3.30.1390.20
            HAMAP:MF_01371_B SUPFAM:SSF55129 TIGRFAMs:TIGR01308 PROSITE:PS00634
            RefSeq:YP_361100.1 ProteinModelPortal:Q3A9T4 SMR:Q3A9T4
            STRING:Q3A9T4 GeneID:3727718 KEGG:chy:CHY_2291 PATRIC:21277653
            OMA:KQNHRDT BioCyc:CHYD246194:GJCN-2290-MONOMER Uniprot:Q3A9T4
        Length = 60

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 22/54 (40%), Positives = 37/54 (68%)

Query:    19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
             L ITLV+ + G     + T+++L LRK N+TV++ +TP +RGM+ +V  L+ +E
Sbjct:     5 LKITLVKSVIGQSERQKATVKSLGLRKLNQTVIKADTPEIRGMINKVSHLLKVE 58


>TIGR_CMR|BA_0128 [details] [associations]
            symbol:BA_0128 "ribosomal protein L30" species:198094
            "Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
            of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            InterPro:IPR005996 PIRSF:PIRSF002211 InterPro:IPR016082
            Pfam:PF00327 INTERPRO:IPR018038 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003735 GO:GO:0015934
            RefSeq:NP_842696.1 RefSeq:YP_016733.1 RefSeq:YP_026414.1
            HSSP:P74909 ProteinModelPortal:Q81VR2 SMR:Q81VR2 DNASU:1084559
            EnsemblBacteria:EBBACT00000012744 EnsemblBacteria:EBBACT00000015370
            EnsemblBacteria:EBBACT00000023284 GeneID:1084559 GeneID:2818207
            GeneID:2852428 KEGG:ban:BA_0128 KEGG:bar:GBAA_0128 KEGG:bat:BAS0128
            eggNOG:COG1841 HOGENOM:HOG000039916 KO:K02907 OMA:PNILGMV
            ProtClustDB:PRK05611 BioCyc:BANT260799:GJAJ-139-MONOMER
            BioCyc:BANT261594:GJ7F-141-MONOMER Gene3D:3.30.1390.20
            HAMAP:MF_01371_B SUPFAM:SSF55129 TIGRFAMs:TIGR01308 PROSITE:PS00634
            Uniprot:Q81VR2
        Length = 60

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query:    19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
             L ITL R + G  +  R T+EAL L+K N TV++  TP + GM+ +V  LV ++
Sbjct:     5 LEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58


>TIGR_CMR|GSU_2839 [details] [associations]
            symbol:GSU_2839 "ribosomal protein L30" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
            of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            [GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR005996
            PIRSF:PIRSF002211 InterPro:IPR016082 Pfam:PF00327 GO:GO:0006412
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0015934
            HSSP:P74909 eggNOG:COG1841 HOGENOM:HOG000039916 KO:K02907
            ProtClustDB:PRK05611 Gene3D:3.30.1390.20 HAMAP:MF_01371_B
            SUPFAM:SSF55129 TIGRFAMs:TIGR01308 PROSITE:PS00634
            RefSeq:NP_953882.1 ProteinModelPortal:Q749A5 GeneID:2686828
            KEGG:gsu:GSU2839 PATRIC:22028525 OMA:SAIGCKY
            BioCyc:GSUL243231:GH27-2798-MONOMER Uniprot:Q749A5
        Length = 59

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 27/58 (46%), Positives = 34/58 (58%)

Query:    16 SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLV-VIE 72
             S  L ITLVR   GT    R  L  L L K N+TV+  NTP + GM+Q+V  +V V+E
Sbjct:     2 SAELKITLVRSHIGTTSKQRAVLNGLGLTKVNKTVVLKNTPEIVGMVQKVAHMVKVVE 59


>TIGR_CMR|CBU_0256 [details] [associations]
            symbol:CBU_0256 "ribosomal protein L30p/L7e"
            species:227377 "Coxiella burnetii RSA 493" [GO:0003735 "structural
            constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
            evidence=ISS] InterPro:IPR005996 PIRSF:PIRSF002211
            InterPro:IPR016082 Pfam:PF00327 GO:GO:0006412 EMBL:AE016828
            GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0015934
            eggNOG:COG1841 HOGENOM:HOG000039916 KO:K02907 ProtClustDB:PRK05611
            Gene3D:3.30.1390.20 HAMAP:MF_01371_B SUPFAM:SSF55129
            TIGRFAMs:TIGR01308 PROSITE:PS00634 RefSeq:NP_819300.1
            ProteinModelPortal:Q83EQ8 GeneID:1208137 KEGG:cbu:CBU_0256
            PATRIC:17929205 OMA:IKSTNGR BioCyc:CBUR227377:GJ7S-262-MONOMER
            Uniprot:Q83EQ8
        Length = 63

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 22/56 (39%), Positives = 36/56 (64%)

Query:    19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETE 74
             L +TLV+   G +  HR  +E L LR+ ++TV   +TP  RGM+++V  L++I+ E
Sbjct:     7 LRVTLVKSKYGRKPGHRECIEGLGLRRMHQTVEVTDTPANRGMIEKVSYLLMIDEE 62


>TIGR_CMR|CPS_0619 [details] [associations]
            symbol:CPS_0619 "ribosomal protein L30" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
            of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            [GO:0015934 "large ribosomal subunit" evidence=ISS]
            InterPro:IPR005996 PIRSF:PIRSF002211 InterPro:IPR016082
            Pfam:PF00327 INTERPRO:IPR018038 GO:GO:0006412 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0015934
            eggNOG:COG1841 HOGENOM:HOG000039916 KO:K02907 Gene3D:3.30.1390.20
            HAMAP:MF_01371_B SUPFAM:SSF55129 TIGRFAMs:TIGR01308 PROSITE:PS00634
            OMA:KQNHRDT RefSeq:YP_267369.1 ProteinModelPortal:Q488Z5 SMR:Q488Z5
            STRING:Q488Z5 GeneID:3519872 KEGG:cps:CPS_0619 PATRIC:21464565
            BioCyc:CPSY167879:GI48-706-MONOMER Uniprot:Q488Z5
        Length = 61

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query:    16 SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
             S  + +T ++   G    HR TL+ L LR+ N TV   +TP+VRGM+ +V  +V +E
Sbjct:     4 SKTVKVTQLKSSIGRLPKHRATLKGLGLRRINHTVELEDTPSVRGMINKVYYMVKVE 60


>UNIPROTKB|Q9KP02 [details] [associations]
            symbol:rpmD "50S ribosomal protein L30" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
            "structural constituent of ribosome" evidence=ISS] [GO:0006412
            "translation" evidence=ISS] InterPro:IPR005996 PIRSF:PIRSF002211
            InterPro:IPR016082 Pfam:PF00327 INTERPRO:IPR018038 GO:GO:0006412
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003735 GO:GO:0015934
            eggNOG:COG1841 KO:K02907 ProtClustDB:PRK05611 Gene3D:3.30.1390.20
            HAMAP:MF_01371_B SUPFAM:SSF55129 TIGRFAMs:TIGR01308 PROSITE:PS00634
            OMA:KQNHRDT PIR:D82057 RefSeq:NP_232206.1 ProteinModelPortal:Q9KP02
            SMR:Q9KP02 DNASU:2615595 GeneID:2615595 KEGG:vch:VC2578
            PATRIC:20084182 Uniprot:Q9KP02
        Length = 58

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query:    21 ITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
             +T  +   G    H+ TL  L LRK N TV   +TP VRGM+ +V  +V +E
Sbjct:     6 VTQTKSSIGRLPKHKATLRGLGLRKINHTVELEDTPCVRGMINKVYYMVKVE 57


>TIGR_CMR|VC_2578 [details] [associations]
            symbol:VC_2578 "ribosomal protein L30" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
            ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            InterPro:IPR005996 PIRSF:PIRSF002211 InterPro:IPR016082
            Pfam:PF00327 INTERPRO:IPR018038 GO:GO:0006412 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003735 GO:GO:0015934
            eggNOG:COG1841 KO:K02907 ProtClustDB:PRK05611 Gene3D:3.30.1390.20
            HAMAP:MF_01371_B SUPFAM:SSF55129 TIGRFAMs:TIGR01308 PROSITE:PS00634
            OMA:KQNHRDT PIR:D82057 RefSeq:NP_232206.1 ProteinModelPortal:Q9KP02
            SMR:Q9KP02 DNASU:2615595 GeneID:2615595 KEGG:vch:VC2578
            PATRIC:20084182 Uniprot:Q9KP02
        Length = 58

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query:    21 ITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
             +T  +   G    H+ TL  L LRK N TV   +TP VRGM+ +V  +V +E
Sbjct:     6 VTQTKSSIGRLPKHKATLRGLGLRKINHTVELEDTPCVRGMINKVYYMVKVE 57


>UNIPROTKB|P0AG51 [details] [associations]
            symbol:rpmD "50S ribosomal subunit protein L30"
            species:83333 "Escherichia coli K-12" [GO:0015934 "large ribosomal
            subunit" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
            [GO:0003735 "structural constituent of ribosome" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005840
            "ribosome" evidence=IEA] InterPro:IPR005996 PIRSF:PIRSF002211
            InterPro:IPR016082 Pfam:PF00327 EMBL:X01563 INTERPRO:IPR018038
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0006412 EMBL:U18997 GO:GO:0003735
            GO:GO:0015934 PDB:2RDO PDBsum:2RDO PDB:1ML5 PDBsum:1ML5 PDB:3J0T
            PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS
            PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12
            PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6
            PDB:1VS8 PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T
            PDB:2I2V PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE
            PDB:2QBG PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1
            PDB:2WWQ PDB:2Z4L PDB:2Z4N PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N
            PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU
            PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD
            PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T
            PDB:4GAR PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
            PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
            PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
            PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
            PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
            PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3E1B PDBsum:3E1D
            PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T
            PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU PDBsum:3J01
            PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC
            PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0
            PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU
            PDB:3BBX PDBsum:3BBX eggNOG:COG1841 HOGENOM:HOG000039916 KO:K02907
            ProtClustDB:PRK05611 Gene3D:3.30.1390.20 HAMAP:MF_01371_B
            SUPFAM:SSF55129 TIGRFAMs:TIGR01308 PROSITE:PS00634 OMA:KQNHRDT
            PIR:A65123 RefSeq:NP_417761.1 RefSeq:YP_492130.1
            ProteinModelPortal:P0AG51 SMR:P0AG51 DIP:DIP-35970N IntAct:P0AG51
            PaxDb:P0AG51 PRIDE:P0AG51 EnsemblBacteria:EBESCT00000000347
            EnsemblBacteria:EBESCT00000017403 GeneID:12934448 GeneID:947797
            KEGG:ecj:Y75_p3874 KEGG:eco:b3302 PATRIC:32122036 EchoBASE:EB0881
            EcoGene:EG10888 BioCyc:EcoCyc:EG10888-MONOMER
            BioCyc:ECOL316407:JW3264-MONOMER EvolutionaryTrace:P0AG51
            Genevestigator:P0AG51 Uniprot:P0AG51
        Length = 59

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query:    21 ITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
             IT  R   G    H+ TL  L LR+   TV R +TP +RGM+  V  +V +E
Sbjct:     7 ITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVE 58


>TIGR_CMR|SO_0249 [details] [associations]
            symbol:SO_0249 "ribosomal protein L30" species:211586
            "Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
            ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            InterPro:IPR005996 PIRSF:PIRSF002211 InterPro:IPR016082
            Pfam:PF00327 INTERPRO:IPR018038 GO:GO:0006412 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0015934
            eggNOG:COG1841 HOGENOM:HOG000039916 KO:K02907 ProtClustDB:PRK05611
            Gene3D:3.30.1390.20 HAMAP:MF_01371_B SUPFAM:SSF55129
            TIGRFAMs:TIGR01308 PROSITE:PS00634 OMA:KQNHRDT RefSeq:NP_715889.1
            ProteinModelPortal:Q8EK52 SMR:Q8EK52 GeneID:1168132
            KEGG:son:SO_0249 PATRIC:23520191 Uniprot:Q8EK52
        Length = 60

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query:    29 GTRRL--HRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
             G  RL  HR TL  L LR+   TV   +TP+VRGM+ +V  +V +E
Sbjct:    14 GIGRLPKHRATLTGLGLRRIGHTVELEDTPSVRGMINKVYYMVKVE 59


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.132   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      107       107   0.00091  102 3  11 22  0.37    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  554 (59 KB)
  Total size of DFA:  121 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.36u 0.14s 11.50t   Elapsed:  00:00:00
  Total cpu time:  11.36u 0.14s 11.50t   Elapsed:  00:00:00
  Start:  Fri May 10 09:39:10 2013   End:  Fri May 10 09:39:10 2013

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