BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033963
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q47J85|RL30_DECAR 50S ribosomal protein L30 OS=Dechloromonas aromatica (strain RCB)
GN=rpmD PE=3 SV=1
Length = 60
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ +TLV+ + GT++ HR T++ L LRK N + +TP VRGM+Q+V+ LV +E
Sbjct: 6 IKVTLVKSVIGTKQDHRATVKGLGLRKLNSSSELIDTPAVRGMIQKVQYLVKVE 59
>sp|C3PL27|RL30_CORA7 50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain
ATCC 700975 / DSM 44827 / CN-1) GN=rpmD PE=3 SV=1
Length = 61
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 38/54 (70%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L IT V+G+ GT+ HR +E+L L++ +V++ +TP +RGM+ +V+ LV +E
Sbjct: 3 LKITQVKGLVGTKPNHRANMESLGLKRIGHSVVKQDTPIIRGMVHKVRHLVTVE 56
>sp|Q8FS51|RL30_COREF 50S ribosomal protein L30 OS=Corynebacterium efficiens (strain
DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC
100395) GN=rpmD PE=3 SV=1
Length = 61
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L IT V+G GT+ HR L +L L++ +V+R +TP VRGM+Q V+ L+V+E
Sbjct: 3 LKITQVKGTIGTKPKHRDNLRSLGLKRIRHSVVRPDTPEVRGMVQAVRHLIVVE 56
>sp|A1KB09|RL30_AZOSB 50S ribosomal protein L30 OS=Azoarcus sp. (strain BH72) GN=rpmD
PE=3 SV=1
Length = 60
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 16 SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ +TLV+ + GT++ HR T+ L LR+ N TV +TP VRGM+ +V LV +E
Sbjct: 3 DKKIKVTLVKSVIGTKQSHRATVRGLGLRRLNHTVELVDTPAVRGMVTKVAYLVKVE 59
>sp|Q8NSX3|RL30_CORGL 50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain
ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB
10025) GN=rpmD PE=3 SV=1
Length = 61
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L IT ++G GT+ HR L +L L++ TV+R +TP VRGM+ V+ L+V+E
Sbjct: 3 LKITQIKGTVGTKPKHRENLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56
>sp|A4QBL5|RL30_CORGB 50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain
R) GN=rpmD PE=3 SV=1
Length = 61
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L IT ++G GT+ HR L +L L++ TV+R +TP VRGM+ V+ L+V+E
Sbjct: 3 LKITQIKGTVGTKPKHRDNLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56
>sp|Q5HM17|RL30_STAEQ 50S ribosomal protein L30 OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=rpmD PE=3 SV=1
Length = 60
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETE 74
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK L+ IE E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLLTIEEE 59
>sp|Q3A9T4|RL30_CARHZ 50S ribosomal protein L30 OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=rpmD PE=3 SV=1
Length = 60
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 37/54 (68%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITLV+ + G + T+++L LRK N+TV++ +TP +RGM+ +V L+ +E
Sbjct: 5 LKITLVKSVIGQSERQKATVKSLGLRKLNQTVIKADTPEIRGMINKVSHLLKVE 58
>sp|A8ZV75|RL30_DESOH 50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM
6200 / Hxd3) GN=rpmD PE=3 SV=2
Length = 65
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
S ++ +TL + M G HR+ L A+ L K NRTV +TPTV+GM+++V L+ +E
Sbjct: 1 MSGSIKVTLAKSMIGRPEKHRKVLRAMGLTKVNRTVCLQDTPTVQGMIRKVSHLLRVE 58
>sp|P0A0G1|RL30_STAAW 50S ribosomal protein L30 OS=Staphylococcus aureus (strain MW2)
GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|A8Z339|RL30_STAAT 50S ribosomal protein L30 OS=Staphylococcus aureus (strain USA300
/ TCH1516) GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|Q6G789|RL30_STAAS 50S ribosomal protein L30 OS=Staphylococcus aureus (strain
MSSA476) GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|Q6GEK1|RL30_STAAR 50S ribosomal protein L30 OS=Staphylococcus aureus (strain
MRSA252) GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|P0A0G0|RL30_STAAN 50S ribosomal protein L30 OS=Staphylococcus aureus (strain N315)
GN=rpmD PE=1 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|P0A0F9|RL30_STAAM 50S ribosomal protein L30 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|A6QJ74|RL30_STAAE 50S ribosomal protein L30 OS=Staphylococcus aureus (strain
Newman) GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|Q5HDX6|RL30_STAAC 50S ribosomal protein L30 OS=Staphylococcus aureus (strain COL)
GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|Q2YYL5|RL30_STAAB 50S ribosomal protein L30 OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|A5IV16|RL30_STAA9 50S ribosomal protein L30 OS=Staphylococcus aureus (strain JH9)
GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|P0A0G2|RL30_STAA8 50S ribosomal protein L30 OS=Staphylococcus aureus (strain NCTC
8325) GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|Q2FEQ7|RL30_STAA3 50S ribosomal protein L30 OS=Staphylococcus aureus (strain
USA300) GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|A6U3V7|RL30_STAA2 50S ribosomal protein L30 OS=Staphylococcus aureus (strain JH1)
GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|A7X5D6|RL30_STAA1 50S ribosomal protein L30 OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=rpmD PE=3 SV=1
Length = 59
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVE 57
>sp|B1HMW2|RL30_LYSSC 50S ribosomal protein L30 OS=Lysinibacillus sphaericus (strain
C3-41) GN=rpmD PE=3 SV=2
Length = 60
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL + + GT+ R+T+EAL LRK ++TV + + RGML +V LV ++
Sbjct: 5 LEITLTKSVIGTKPAQRKTVEALGLRKLHQTVEKADNAATRGMLDKVAHLVTVK 58
>sp|Q8ETW6|RL30_OCEIH 50S ribosomal protein L30 OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=rpmD PE=3
SV=1
Length = 60
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
S L ITL R + G + ++T+EAL L+K ++V+R +TP VRGM+ +V L+ ++
Sbjct: 1 MSKKLEITLNRSVIGGTGVQKKTVEALGLKKIRQSVVREDTPAVRGMVNRVSHLLTVK 58
>sp|Q8CRH8|RL30_STAES 50S ribosomal protein L30 OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=rpmD PE=3 SV=1
Length = 59
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +VK L+ IE
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLLTIE 57
>sp|Q749A5|RL30_GEOSL 50S ribosomal protein L30 OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=rpmD PE=3 SV=1
Length = 59
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLV 69
S L ITLVR GT R L L L K N+TV+ NTP + GM+Q+V +V
Sbjct: 1 MSAELKITLVRSHIGTTSKQRAVLNGLGLTKVNKTVVLKNTPEIVGMVQKVAHMV 55
>sp|B2A4F7|RL30_NATTJ 50S ribosomal protein L30 OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rpmD PE=3
SV=1
Length = 63
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEE 75
L +TL RG+ G RT++AL L+K + +V++ +TP +RGM+ +V LV +E E
Sbjct: 6 LKVTLKRGLIGVSDGKIRTIKALGLKKRSHSVIKNDTPEIRGMIDKVSNLVEVEELE 62
>sp|Q6AP52|RL30_DESPS 50S ribosomal protein L30 OS=Desulfotalea psychrophila (strain
LSv54 / DSM 12343) GN=rpmD PE=3 SV=1
Length = 60
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ + TLV+ G+ R TL L L K N+TV R +TP +RGML +VK LV I+
Sbjct: 1 MTETITFTLVKSGIGSTDKIRATLTGLGLTKLNKTVTRKDTPEIRGMLNKVKHLVRID 58
>sp|Q2L263|RL30_BORA1 50S ribosomal protein L30 OS=Bordetella avium (strain 197N)
GN=rpmD PE=3 SV=1
Length = 61
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 18 NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVI 71
+ +TLVR + GT++ HR T+ L LR N + + +TP VRGML++V LV +
Sbjct: 5 QIKVTLVRSVIGTKQSHRDTVRGLGLRGLNSSRVLIDTPEVRGMLRKVDYLVTV 58
>sp|Q7VTB3|RL30_BORPE 50S ribosomal protein L30 OS=Bordetella pertussis (strain Tohama
I / ATCC BAA-589 / NCTC 13251) GN=rpmD PE=3 SV=1
Length = 61
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 18 NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ +TLVR + GT++ HR T+ L LR+ N + + +TP VRGM+ +V LV +
Sbjct: 5 QIKVTLVRSVIGTKQSHRDTIRGLGLRRINSSRVLVDTPEVRGMIHKVGYLVSVS 59
>sp|Q7W2D7|RL30_BORPA 50S ribosomal protein L30 OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=rpmD PE=3 SV=1
Length = 61
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 18 NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ +TLVR + GT++ HR T+ L LR+ N + + +TP VRGM+ +V LV +
Sbjct: 5 QIKVTLVRSVIGTKQSHRDTIRGLGLRRINSSRVLVDTPEVRGMIHKVGYLVSVS 59
>sp|Q7WRA5|RL30_BORBR 50S ribosomal protein L30 OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=rpmD PE=3 SV=1
Length = 61
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 18 NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ +TLVR + GT++ HR T+ L LR+ N + + +TP VRGM+ +V LV +
Sbjct: 5 QIKVTLVRSVIGTKQSHRDTIRGLGLRRINSSRVLVDTPEVRGMIHKVGYLVSVS 59
>sp|Q49ZF0|RL30_STAS1 50S ribosomal protein L30 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpmD
PE=3 SV=1
Length = 59
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L ITL R + G R+T+EAL L+K N +V+ + P +RG + +V LV +E
Sbjct: 4 LQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVSHLVTVE 57
>sp|A9IHS8|RL30_BORPD 50S ribosomal protein L30 OS=Bordetella petrii (strain ATCC
BAA-461 / DSM 12804 / CCUG 43448) GN=rpmD PE=3 SV=1
Length = 61
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 18 NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVI 71
+ +TLVR + GT++ HR T+ L LR+ N + + +TP VRGM+++V LV +
Sbjct: 5 QIKVTLVRSVIGTKQSHRDTVRGLGLRRINSSRVLVDTPEVRGMIRKVDYLVSV 58
>sp|A1ALV9|RL30_PELPD 50S ribosomal protein L30 OS=Pelobacter propionicus (strain DSM
2379) GN=rpmD PE=3 SV=1
Length = 58
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVI 71
S L ITLV+ + GT + R + L L+K N TV+R +TP +RGM+ ++ ++ I
Sbjct: 1 MSNTLKITLVKSLIGTPKQQRNVVAGLGLKKLNTTVVRSDTPEIRGMINKISHMLHI 57
>sp|Q6HPP0|RL30_BACHK 50S ribosomal protein L30 OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=rpmD PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|Q63H72|RL30_BACCZ 50S ribosomal protein L30 OS=Bacillus cereus (strain ZK / E33L)
GN=rpmD PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|Q81J24|RL30_BACCR 50S ribosomal protein L30 OS=Bacillus cereus (strain ATCC 14579 /
DSM 31) GN=rpmD PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|B9IZL2|RL30_BACCQ 50S ribosomal protein L30 OS=Bacillus cereus (strain Q1) GN=rpmD
PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|B7HQW2|RL30_BACC7 50S ribosomal protein L30 OS=Bacillus cereus (strain AH187)
GN=rpmD PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|B7HJ66|RL30_BACC4 50S ribosomal protein L30 OS=Bacillus cereus (strain B4264)
GN=rpmD PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|C1ET57|RL30_BACC3 50S ribosomal protein L30 OS=Bacillus cereus (strain 03BB102)
GN=rpmD PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|Q73F78|RL30_BACC1 50S ribosomal protein L30 OS=Bacillus cereus (strain ATCC 10987)
GN=rpmD PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|B7JKD7|RL30_BACC0 50S ribosomal protein L30 OS=Bacillus cereus (strain AH820)
GN=rpmD PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|Q81VR2|RL30_BACAN 50S ribosomal protein L30 OS=Bacillus anthracis GN=rpmD PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|A0R8J8|RL30_BACAH 50S ribosomal protein L30 OS=Bacillus thuringiensis (strain Al
Hakam) GN=rpmD PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|C3LJA0|RL30_BACAC 50S ribosomal protein L30 OS=Bacillus anthracis (strain CDC 684 /
NRRL 3495) GN=rpmD PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|C3P9S3|RL30_BACAA 50S ribosomal protein L30 OS=Bacillus anthracis (strain A0248)
GN=rpmD PE=3 SV=1
Length = 60
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
+ L ITL R + G + R T+EAL L+K N TV++ TP + GM+ +V LV ++
Sbjct: 1 MAKKLEITLTRSVIGRPQDQRATVEALGLKKLNSTVVKEETPAILGMINKVSHLVTVK 58
>sp|A0PXW4|RL30_CLONN 50S ribosomal protein L30 OS=Clostridium novyi (strain NT)
GN=rpmD PE=3 SV=1
Length = 59
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72
L +TL + + G ++ H T+ AL L+K ++VM +TP +RGM+ +V L+ +E
Sbjct: 4 LKVTLTKSIIGRKKDHIATVNALGLKKIGKSVMHEDTPQIRGMINKVSYLLNVE 57
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,392,524
Number of Sequences: 539616
Number of extensions: 1194763
Number of successful extensions: 4261
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3644
Number of HSP's gapped (non-prelim): 618
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)