Query 033963
Match_columns 107
No_of_seqs 122 out of 1006
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05611 rpmD 50S ribosomal pr 99.9 3E-26 6.4E-31 146.7 7.2 59 16-74 1-59 (59)
2 TIGR01308 rpmD_bact ribosomal 99.9 2.2E-25 4.7E-30 141.0 6.3 55 19-73 1-55 (55)
3 COG1841 RpmD Ribosomal protein 99.9 6.4E-25 1.4E-29 139.4 5.8 55 19-73 1-55 (55)
4 cd01658 Ribosomal_L30 Ribosoma 99.9 1.7E-24 3.6E-29 136.2 6.0 54 19-72 1-54 (54)
5 cd00355 Ribosomal_L30_like Rib 99.9 3E-22 6.6E-27 124.7 6.1 53 20-72 1-53 (53)
6 PF00327 Ribosomal_L30: Riboso 99.8 9.8E-21 2.1E-25 117.3 6.4 52 18-69 1-52 (52)
7 PRK06049 rpl30p 50S ribosomal 99.8 1E-19 2.2E-24 135.3 8.0 68 18-85 2-69 (154)
8 TIGR01309 L30P_arch 50S riboso 99.8 4.4E-19 9.5E-24 131.7 8.1 67 19-85 1-67 (152)
9 cd01657 Ribosomal_L7_archeal_e 99.7 5.1E-18 1.1E-22 126.2 7.9 67 19-85 2-68 (159)
10 TIGR01310 L7 60S ribosomal pro 99.5 2.5E-13 5.5E-18 107.0 8.5 75 10-85 67-141 (235)
11 KOG4799 Mitochondrial ribosoma 98.9 5.1E-09 1.1E-13 79.6 6.1 64 12-75 53-117 (182)
12 KOG3184 60S ribosomal protein 97.5 0.00021 4.7E-09 56.7 5.3 69 13-81 70-138 (235)
13 KOG1097 Adenine deaminase/aden 38.1 55 0.0012 28.2 4.3 64 16-79 238-302 (399)
14 PRK15180 Vi polysaccharide bio 20.5 50 0.0011 30.2 1.1 53 49-101 142-199 (831)
No 1
>PRK05611 rpmD 50S ribosomal protein L30; Reviewed
Probab=99.93 E-value=3e-26 Score=146.70 Aligned_cols=59 Identities=42% Similarity=0.579 Sum_probs=56.9
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEec
Q 033963 16 SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETE 74 (107)
Q Consensus 16 ~~~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei 74 (107)
|++|+|+|+||.||+++++++||++|||+|+|++|+++|||+++|||+||+|||+|||+
T Consensus 1 m~~~~I~~vRs~ig~~~~~r~tl~~LgL~k~~~~v~~~dtp~~rGmi~kV~~lV~vee~ 59 (59)
T PRK05611 1 MKTLKITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVEEV 59 (59)
T ss_pred CCcEEEEEeecCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHhhEEEEeC
Confidence 35799999999999999999999999999999999999999999999999999999985
No 2
>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle. This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models.
Probab=99.92 E-value=2.2e-25 Score=140.98 Aligned_cols=55 Identities=44% Similarity=0.693 Sum_probs=53.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEe
Q 033963 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIET 73 (107)
Q Consensus 19 l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~vee 73 (107)
++|+|+||.||+++++++||++|||+|+|++|+++|||+++|||+||+|||+|||
T Consensus 1 lkItlvrs~ig~~~~~r~tl~~LgL~k~~~~v~~~dtp~irGMi~kV~~lV~vee 55 (55)
T TIGR01308 1 IKVTLVRSLIGRPKKQRKTLKALGLRKIGRQVVLEDNPAIRGMVNKVKHLVKVEE 55 (55)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHheEEEeC
Confidence 5899999999999999999999999999999999999999999999999999986
No 3
>COG1841 RpmD Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.4e-25 Score=139.43 Aligned_cols=55 Identities=47% Similarity=0.627 Sum_probs=53.7
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEe
Q 033963 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIET 73 (107)
Q Consensus 19 l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~vee 73 (107)
++|+|+||+||+|++|++||++|||+|+|++|+++|||+++|||+||+|||+|||
T Consensus 1 ~~V~~iRs~ig~~~~~r~tl~~LgL~kin~~v~~~dtp~irGMi~kV~~lV~v~e 55 (55)
T COG1841 1 LKVTLIRSPIGRPPKIRKTLRLLGLRKINHTVIVEDTPAVRGMLNKVKHLVTVGE 55 (55)
T ss_pred CeEEEEeccCCCChHHHHHHHHhCCCccCCEEEEcCCHHHHHHHHHHHhheEecC
Confidence 5899999999999999999999999999999999999999999999999999986
No 4
>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=99.91 E-value=1.7e-24 Score=136.16 Aligned_cols=54 Identities=48% Similarity=0.737 Sum_probs=52.8
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEE
Q 033963 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72 (107)
Q Consensus 19 l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~ve 72 (107)
++|+|+||.||.++++++||++|||+|+|++|+++|||+++|||+||+|||+||
T Consensus 1 ~~i~~iRs~ig~~~~~r~tl~~LgL~k~~~~v~~~~tp~~~Gml~kV~~lV~ve 54 (54)
T cd01658 1 LKITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLVKVE 54 (54)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHHhheEEeC
Confidence 589999999999999999999999999999999999999999999999999986
No 5
>cd00355 Ribosomal_L30_like Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=99.87 E-value=3e-22 Score=124.70 Aligned_cols=53 Identities=47% Similarity=0.684 Sum_probs=51.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEE
Q 033963 20 YITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIE 72 (107)
Q Consensus 20 ~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~ve 72 (107)
+|+|+||.+|+++++++||++|||+|+|++|+++|||+++|||++|+|||+||
T Consensus 1 ~V~~irs~ig~~~~~~~tl~~LgL~k~~~~v~~~~tp~~~gml~kV~~lV~~~ 53 (53)
T cd00355 1 KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTVG 53 (53)
T ss_pred CEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhccceEEEC
Confidence 48999999999999999999999999999999999999999999999999996
No 6
>PF00327 Ribosomal_L30: Ribosomal protein L30p/L7e; InterPro: IPR016082 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L30 is one of the proteins from the large ribosomal subunit. L30 belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups bacteria and archaea L30, yeast mitochondrial L33, and Drosophila melanogaster, Dictyostelium discoideum (Slime mold), fungal and mammalian L7 ribosomal proteins. L30 from bacteria are small proteins of about 60 residues, those from archaea are proteins of about 150 residues, and eukaryotic L7 are proteins of about 250 to 270 residues. This entry represents a domain with a ferredoxin-like fold, with a core structure consisting of core: beta-alpha-beta-alpha-beta. This domain is found in prokaryotic ribosomal protein L30 (short-chain member of the family), as well as in archaeal L30 (L30a) (long-chain member of the family), the later containing an additional C-terminal (sub)domain).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3DF2_Y 3DF4_Y 3O5H_G 3O58_G 1S1I_F 3IZS_e 1M1K_X 1M90_X 1QVG_V 1YIT_W ....
Probab=99.83 E-value=9.8e-21 Score=117.35 Aligned_cols=52 Identities=48% Similarity=0.682 Sum_probs=48.7
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccce
Q 033963 18 NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLV 69 (107)
Q Consensus 18 ~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV 69 (107)
.++|+|+||.+|.++++++||++|||+|+|++|+++|||+++|||++|+|||
T Consensus 1 ~l~V~~irs~~g~~~~~~~tl~~LgL~k~~~~v~~~~t~~~~gml~kV~~lV 52 (52)
T PF00327_consen 1 LLFVTRIRSPIGAPPKVRKTLKALGLRKINQAVFVKNTPSIRGMLKKVKHLV 52 (52)
T ss_dssp EEEEEESS-STTSSHHHHHHHHHTT-SSTTEEEEEESSHHHHHHHHHTGCGE
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEECCHHHHHHHHHHHhhC
Confidence 4789999999999999999999999999999999999999999999999997
No 7
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed
Probab=99.80 E-value=1e-19 Score=135.32 Aligned_cols=68 Identities=28% Similarity=0.289 Sum_probs=63.2
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHHHHHHHH
Q 033963 18 NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKEKLA 85 (107)
Q Consensus 18 ~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~r~~~~~ 85 (107)
.+.|+|+||.+|+++++++||++|||+|+|++|+++|||+++|||++|+|||+|+|++.+..++-...
T Consensus 2 ~~~ViriRg~ig~~~~~r~tL~~LgL~ki~~~V~v~~tp~~~GML~kV~~~V~~ge~~~~tv~~Li~k 69 (154)
T PRK06049 2 MYAVIRIRGRVNVPRDIADTLKMLRLHRVNHCVLVPETPSYKGMLQKVKDYVTWGEIDADTLAELLRK 69 (154)
T ss_pred cEEEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhhceeEEeeCchHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999998887664433
No 8
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal. This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.
Probab=99.78 E-value=4.4e-19 Score=131.69 Aligned_cols=67 Identities=33% Similarity=0.304 Sum_probs=62.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHHHHHHHH
Q 033963 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKEKLA 85 (107)
Q Consensus 19 l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~r~~~~~ 85 (107)
+.|+|+||.+|.++++++||++|||+|+|++|++++||+++|||++|+|||+|+|++.+..++....
T Consensus 1 ~~ViriRg~ig~~~~~r~tL~~LrL~ri~~~V~v~~tp~~~gML~kV~~yV~~ge~~~~tv~~Li~k 67 (152)
T TIGR01309 1 LAVIRIRGTVDVPRDIADTLEMLRLHRVNHCVLYPETPTYLGMLQKVKDYVTWGEIDEDTLELLIRK 67 (152)
T ss_pred CeEEEecCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHHhHhheeEecCCHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999999987775544
No 9
>cd01657 Ribosomal_L7_archeal_euk Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes.
Probab=99.74 E-value=5.1e-18 Score=126.24 Aligned_cols=67 Identities=28% Similarity=0.356 Sum_probs=63.1
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHHHHHHHH
Q 033963 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKEKLA 85 (107)
Q Consensus 19 l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~r~~~~~ 85 (107)
+.|+|+||.+|.++++++||++|||+|+|++|++++||+++|||++|+|||+|++++.+..++....
T Consensus 2 ~~Virirg~~g~~~~~r~tL~~LgL~k~~~~v~~~~t~~~~gmL~kV~~~V~~ge~~~~tv~~Li~k 68 (159)
T cd01657 2 YAVVRIRGIVGVPPKIRKTLQLLRLRRINNAVFVKLTKATIGMLKKVEPYVTWGEPNLETLRELIYK 68 (159)
T ss_pred EEEEEecCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHHhhhheEeccCcHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999987775444
No 10
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
Probab=99.46 E-value=2.5e-13 Score=106.98 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=68.0
Q ss_pred cCCCCCCCeEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHHHHHHHH
Q 033963 10 CVPIEWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKEKLA 85 (107)
Q Consensus 10 ~~p~~~~~~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~r~~~~~ 85 (107)
++|++ .+.+.|+++||..|.+|++++||+.|+|+++|++|++++||++.|||++|++||+|++++.+..++....
T Consensus 67 ~~~~e-~kl~fVIRirG~~~v~p~v~k~L~lLRL~~in~~Vfvk~~~~~~~ML~~VepYVt~G~p~l~tvr~Li~K 141 (235)
T TIGR01310 67 YVPAE-HKLLFVIRIKGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKATLQMLRIVEPYVAYGYPNLKSVRELIYK 141 (235)
T ss_pred CCCCC-CeEEEEEEeCCCCCCCHHHHHHHHHhCCCccceEEEEECCHHHHHHHHhcCCeEEEecCCHHHHHHHHHH
Confidence 44544 6889999999999999999999999999999999999999999999999999999999999987764433
No 11
>KOG4799 consensus Mitochondrial ribosomal protein L30 [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=5.1e-09 Score=79.59 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=60.4
Q ss_pred CCCCCCeEEEEEecCCCCCCHHHHHHHHHhCCCCCCc-eEEecCChhhHhHHhccccceEEEecc
Q 033963 12 PIEWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNR-TVMRWNTPTVRGMLQQVKRLVVIETEE 75 (107)
Q Consensus 12 p~~~~~~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~-~Vi~~dtP~irGMI~KVkhLV~veei~ 75 (107)
|..+++...|+++||+-+.|+|.++++++|||.+... .-+++|+|+++..|++|||||++.++.
T Consensus 53 P~~p~KL~~v~rik~t~~~PyWek~iik~lGld~k~t~~qV~kNip~vNakLwkIKHLI~~~pv~ 117 (182)
T KOG4799|consen 53 PQNPHKLHIVTRIKSTRRRPYWEKDIIKMLGLDKKHTRPQVHKNIPSVNAKLWKIKHLIRLRPVE 117 (182)
T ss_pred CCCccceEEEEEeccccCCcchHHHHHHHhCcccccCCceEeecccchhhHHHHhhheeEEEeec
Confidence 6777999999999999999999999999999998887 889999999999999999999998884
No 12
>KOG3184 consensus 60S ribosomal protein L7 [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00021 Score=56.67 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=63.5
Q ss_pred CCCCCeEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHHHH
Q 033963 13 IEWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARK 81 (107)
Q Consensus 13 ~~~~~~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~r~ 81 (107)
|++.+...|.++||..|.+++.+++|..|.|+.++..+++..|++..-||.-|..||+|+-.+-...++
T Consensus 70 ~~e~~l~fvvri~gin~v~pk~~k~l~lLrL~~If~g~fVKlnk~~~~mLriVepYVa~G~pnlksv~e 138 (235)
T KOG3184|consen 70 PAEPKLAFVIRIRGVNGVEPKSRKVLQLLRLKQIFNGTFVKLNKATVNMLRIVEPYIAWGYPNLKSVSE 138 (235)
T ss_pred ccccccceeeecccccccCchHHHHHHHHHhhccccceeEEechhhhhhHhhcccceeeccCcHHHHHH
Confidence 444677899999999999999999999999999999999999999999999999999999988777555
No 13
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=38.08 E-value=55 Score=28.23 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=56.7
Q ss_pred CCeEEEEEecCCC-CCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHH
Q 033963 16 SPNLYITLVRGMP-GTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKA 79 (107)
Q Consensus 16 ~~~l~ItliRS~i-g~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~ 79 (107)
+..|.+|.-=|-. |-+..++..|..||..|++|-.-.-+.|.+.+++++-.=.+++=+++..+.
T Consensus 238 ~~gi~~t~HaGE~~~~~~~v~~~LD~l~~~RIGHG~~l~~dp~L~~~~k~~nI~lEiCP~SN~vl 302 (399)
T KOG1097|consen 238 AKGIHLTFHAGETNGGASVVKNALDLLGTERIGHGYFLTKDPELINLLKSRNIALEICPISNQVL 302 (399)
T ss_pred hcCCcEEEEccccCCChHHHHHHHHhhCCccccCceeccCCHHHHHHHHhcCceEEEccchhhhe
Confidence 3678889999999 699999999999999999999999999999999999888888888776653
No 14
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=20.51 E-value=50 Score=30.23 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=35.7
Q ss_pred eEEecCChhhHhHHhccccce---EEEecccHHHHHHHHH-hccCCCCC-eEEeecCC
Q 033963 49 TVMRWNTPTVRGMLQQVKRLV---VIETEEMYKARKEKLA-NHQALRPP-MVINHLPS 101 (107)
Q Consensus 49 ~Vi~~dtP~irGMI~KVkhLV---~veei~~~~~r~~~~~-~~~a~r~p-~v~~h~~~ 101 (107)
--+++++|.+.||-.-..+++ .+.+.++++.++..-+ .++--+.+ +||.|---
T Consensus 142 lAYL~ddP~FAgLs~D~r~lLs~ivvrq~teaEIEeDmmeIVqLLGk~rVvfVTHVNA 199 (831)
T PRK15180 142 LAYLKDDPCFAGMSEDDRALLSNINVEQMDEHAIEQDMMEIVQLLGRDRVMFMTHVDA 199 (831)
T ss_pred HHHhhcChhhhhhhHhHHHHHHhhHhhcccHHHHHHHHHHHHHHhCCCcEEEEEeecc
Confidence 457889999999999999984 5666666664443333 33333335 88999643
Done!