Query 033963
Match_columns 107
No_of_seqs 122 out of 1006
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bxy_A Protein (ribosomal prot 100.0 3.1E-28 1.1E-32 155.8 8.3 60 16-75 1-60 (60)
2 3r8s_Z 50S ribosomal protein L 99.9 1.2E-27 4E-32 152.2 7.3 58 16-73 1-58 (58)
3 2zjr_W 50S ribosomal protein L 99.9 6.2E-27 2.1E-31 147.5 5.2 55 19-73 1-55 (55)
4 3j21_Y 50S ribosomal protein L 99.8 2.3E-20 7.8E-25 137.5 9.3 69 16-84 1-69 (155)
5 1vq8_W 50S ribosomal protein L 99.8 2.8E-19 9.6E-24 131.6 9.1 67 19-85 2-68 (154)
6 3iz5_e 60S ribosomal protein L 99.7 8E-18 2.7E-22 131.7 9.4 76 9-85 77-152 (244)
7 4a17_V RPL7, 60S ribosomal pro 99.7 7.2E-18 2.5E-22 131.7 7.8 75 10-85 73-147 (239)
8 3izc_e 60S ribosomal protein R 99.7 1.4E-17 4.8E-22 130.3 9.1 75 10-85 76-150 (244)
9 2zkr_w 60S ribosomal protein L 99.7 2.6E-18 9E-23 136.2 2.8 75 10-85 104-178 (270)
10 3jyw_F 60S ribosomal protein L 98.5 5E-08 1.7E-12 74.3 2.8 75 9-84 44-118 (213)
No 1
>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ...
Probab=99.95 E-value=3.1e-28 Score=155.77 Aligned_cols=60 Identities=32% Similarity=0.483 Sum_probs=57.8
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecc
Q 033963 16 SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEE 75 (107)
Q Consensus 16 ~~~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~ 75 (107)
|++++|||+||.||++++|++||++|||+|+|++|+++|||+++|||+||+|||+|||+|
T Consensus 1 m~~~kItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~veev~ 60 (60)
T 1bxy_A 1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE 60 (60)
T ss_dssp CCEEEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEEEC
T ss_pred CCcEEEEEeecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHhHHHHhHheEEEEecC
Confidence 456999999999999999999999999999999999999999999999999999999985
No 2
>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y* 2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...
Probab=99.94 E-value=1.2e-27 Score=152.20 Aligned_cols=58 Identities=36% Similarity=0.500 Sum_probs=56.4
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEe
Q 033963 16 SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIET 73 (107)
Q Consensus 16 ~~~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~vee 73 (107)
+++|+|||+||.||++++|++||++|||+|+|++|+++|||+++|||+||+|||+|||
T Consensus 1 ~~~lkItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hLV~vee 58 (58)
T 3r8s_Z 1 AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 58 (58)
T ss_dssp CCEEEEEECSCSTTCCHHHHHHHHHHTCCSTTCCCEEECCHHHHHHHHHTGGGEEEEC
T ss_pred CCeEEEEEeecCCCCCHHHHHHHHHcCCCCCCCEEEecCCHHHHHHHHHHHheEEEeC
Confidence 4689999999999999999999999999999999999999999999999999999996
No 3
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W* 3pip_W*
Probab=99.93 E-value=6.2e-27 Score=147.49 Aligned_cols=55 Identities=36% Similarity=0.517 Sum_probs=53.8
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEe
Q 033963 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIET 73 (107)
Q Consensus 19 l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~vee 73 (107)
++|||+||.||++++|++||++|||+|+|++|+++|||+++|||+||+|||+|||
T Consensus 1 ~kIt~vrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~vee 55 (55)
T 2zjr_W 1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55 (55)
T ss_dssp CEEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCCCC
T ss_pred CEEEEEecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHHHHHHhHhhEEEeC
Confidence 5899999999999999999999999999999999999999999999999999986
No 4
>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.82 E-value=2.3e-20 Score=137.49 Aligned_cols=69 Identities=29% Similarity=0.326 Sum_probs=64.2
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHHHHHHH
Q 033963 16 SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKEKL 84 (107)
Q Consensus 16 ~~~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~r~~~~ 84 (107)
|++++|+|+||.+|+++++++||++|||+|+|++|+++|||+++|||++|+|||+||+++....++-..
T Consensus 1 m~~~~V~~irs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~lV~vgep~~ksv~eLi~ 69 (155)
T 3j21_Y 1 MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIR 69 (155)
T ss_dssp CCEEEEEECSCSTTCCHHHHHHHHHTTCCSTTEEEEEECCHHHHHHHHHHTTTEEEEECCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEcCCHHHHHHHHhhhcceEEEcCCHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999999999999877665433
No 5
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ...
Probab=99.79 E-value=2.8e-19 Score=131.64 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=62.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHHHHHHHH
Q 033963 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKEKLA 85 (107)
Q Consensus 19 l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~r~~~~~ 85 (107)
+.|+|+||.+|+++++++||++|||+|+|++|+++|||+++|||++|+|||+||+++.+..++-...
T Consensus 2 ~fV~rirs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~~V~vge~~l~sv~~Li~K 68 (154)
T 1vq8_W 2 HALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLAT 68 (154)
T ss_dssp EEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSGGGEEEECCCHHHHHHHHHH
T ss_pred EEEEEeCCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhCceEEEecCchhhHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999999999998876664443
No 6
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_e
Probab=99.73 E-value=8e-18 Score=131.69 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=69.7
Q ss_pred hcCCCCCCCeEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHHHHHHHH
Q 033963 9 ACVPIEWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKEKLA 85 (107)
Q Consensus 9 ~~~p~~~~~~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~r~~~~~ 85 (107)
.++|++ .+.+.|+++||.+|.++++++||++|||+++|++|++++||+++|||++|+|||+|++++....++-...
T Consensus 77 ~~~p~e-~kl~fVirIRg~ig~~~~~rktL~~LgL~ki~~~Vfv~~npa~~gML~~V~pyV~~G~pnlksv~eLi~K 152 (244)
T 3iz5_e 77 FYVSPE-AKPLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVRELIYK 152 (244)
T ss_dssp SCCCCC-CCCEEEECCSCSTTSCHHHHHHHHHTCCCSTTEEEEECSCHHHHHHHTTTGGGCEEECCCHHHHHHHHHH
T ss_pred CCCCCC-CceEEEEEecCcCCCCHHHHHHHHHcCCCccCCEEEEeCCHHHHHHHHHhhcceeeecCCHHHHHHHHHh
Confidence 367777 5889999999999999999999999999999999999999999999999999999999999887775444
No 7
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=99.72 E-value=7.2e-18 Score=131.67 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=68.9
Q ss_pred cCCCCCCCeEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHHHHHHHH
Q 033963 10 CVPIEWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKEKLA 85 (107)
Q Consensus 10 ~~p~~~~~~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~r~~~~~ 85 (107)
++|++ .+.+.|+++||.+|.++++++||++|||+++|++|++++||+++|||++|+|||+|++++....++-...
T Consensus 73 ~~~~e-~kl~fVirIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~K 147 (239)
T 4a17_V 73 YVPAE-AKVAFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYK 147 (239)
T ss_dssp EECCC-CCEEEEEECSCSSSCCHHHHHHHHHTTCCBTTEEEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHHH
T ss_pred CCCCC-ceEEEEEEecccCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHHh
Confidence 56666 7789999999999999999999999999999999999999999999999999999999999887764443
No 8
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=99.72 E-value=1.4e-17 Score=130.28 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=69.3
Q ss_pred cCCCCCCCeEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHHHHHHHH
Q 033963 10 CVPIEWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKEKLA 85 (107)
Q Consensus 10 ~~p~~~~~~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~r~~~~~ 85 (107)
++|++ .+.+.|+++||.+|.++++++||++|||+++|++|++++||+++|||++|.|||+|++++....++-...
T Consensus 76 ~~p~e-~kl~fVirIRs~ig~~~~~rktL~~LgL~ki~~~Vfv~~npa~~gMLr~V~pyVt~G~pnlksv~eLi~K 150 (244)
T 3izc_e 76 YVEAQ-HKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYK 150 (244)
T ss_dssp CCCCC-CCCEEEECCSCSSSCCHHHHHHHHHHTCCSTTEEEEECSCHHHHHHHHHHTTSCEEECCCHHHHHHHHHH
T ss_pred CCCCC-CceEEEEEecCcCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHHhhHhhcccCCHHHHHHHHHh
Confidence 56777 5889999999999999999999999999999999999999999999999999999999999887775444
No 9
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.70 E-value=2.6e-18 Score=136.19 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=63.7
Q ss_pred cCCCCCCCeEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHHHHHHHH
Q 033963 10 CVPIEWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKEKLA 85 (107)
Q Consensus 10 ~~p~~~~~~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~r~~~~~ 85 (107)
++|++ .+.++|+|+||.+|+++++++||++|||+++|++|+++|||+++|||++|.|||+||+++....++-...
T Consensus 104 yvp~e-~kl~~V~rirs~ig~~~~~rktL~~LgLrki~~~V~v~dtpa~rgML~kV~~~V~vgepnlksv~eLi~K 178 (270)
T 2zkr_w 104 YVPAE-PKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYK 178 (270)
T ss_dssp --------CEEEECCSCSSSSCTTSSSHHHHTCCCSSSEEEEECCCHHHHHTTTSSTTSCBCCCCCTTTHHHHHHH
T ss_pred cccCC-CceeEEEEeCCcCCCCHHHHHHHHHcCCCcCCCeEEEeCCHHHHHHHHhcccceeEecCCHHHHHHHHHh
Confidence 45666 5789999999999999999999999999999999999999999999999999999999998876664433
No 10
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F
Probab=98.49 E-value=5e-08 Score=74.30 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=65.7
Q ss_pred hcCCCCCCCeEEEEEecCCCCCCHHHHHHHHHhCCCCCCceEEecCChhhHhHHhccccceEEEecccHHHHHHHH
Q 033963 9 ACVPIEWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKEKL 84 (107)
Q Consensus 9 ~~~p~~~~~~l~ItliRS~ig~~~~~r~TLk~LGL~K~~~~Vi~~dtP~irGMI~KVkhLV~veei~~~~~r~~~~ 84 (107)
..+|.. .+.+.+.++|+..+.+++.+++++.|+|+++++.++++.|+++.+||++|+.||+|++++..-.++-..
T Consensus 44 ~Svp~e-~kL~fVIRIrGin~ispk~rkvLqLLRL~rInsgvfvk~~k~t~~mL~~VepyV~~G~p~l~tv~eLi~ 118 (213)
T 3jyw_F 44 AAAAAA-AGLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVY 118 (213)
T ss_dssp HTCSCC-CCCCCCCCCSCSSCCCHHHHHHHGGGCCCSSSCBCCCCCSSTTTTHHHHTTTTSCEECCCSSTTTSHHH
T ss_pred hhCccc-CccceeeeecCccCCCCchHHHHHHcccceecceEEecCCHHHHHHHhhccchheeecCCHHHHHHHHH
Confidence 344444 556778999999999999999999999999999999999999999999999999999999877665433
Done!