BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033968
(107 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225434732|ref|XP_002281351.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
isoform 1 [Vitis vinifera]
gi|297745971|emb|CBI16027.3| unnamed protein product [Vitis vinifera]
Length = 105
Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/104 (75%), Positives = 93/104 (89%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+F D S +TFSL++EDHTLAN++RFTLNQDPRV FCGYSIPHPSDARVNIRVQTTG
Sbjct: 1 MEHGSFSDHSKSTFSLSDEDHTLANSIRFTLNQDPRVAFCGYSIPHPSDARVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKID 104
D AREVLKD+CQ+LMLMC+HVRSTF KAV D++ S+ V+ M I+
Sbjct: 61 DSAREVLKDACQDLMLMCQHVRSTFDKAVVDYKMSKPVKDMSIE 104
>gi|388495242|gb|AFK35687.1| unknown [Medicago truncatula]
Length = 115
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/100 (76%), Positives = 90/100 (90%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG++ D S +TFSL +EDHT AN+VRFTLNQDPRVTFCGYSIPHPS+ RVN+RVQTTG
Sbjct: 1 MEHGSYSDLSKSTFSLVDEDHTFANSVRFTLNQDPRVTFCGYSIPHPSENRVNVRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQA 100
DPA EVLKD CQ+LMLMC+HVRSTF KAV+DF+TS+ V++
Sbjct: 61 DPASEVLKDGCQDLMLMCQHVRSTFGKAVNDFKTSKSVRS 100
>gi|351725297|ref|NP_001238111.1| uncharacterized protein LOC100500695 [Glycine max]
gi|255630968|gb|ACU15848.1| unknown [Glycine max]
Length = 107
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/96 (80%), Positives = 88/96 (91%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG++ DQS +TFSL +EDHT ANAVRFTLNQDPRV+FCGYSIPHPSD RVNIRVQTTG
Sbjct: 1 MEHGSYTDQSKSTFSLVDEDHTFANAVRFTLNQDPRVSFCGYSIPHPSDNRVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
DP+REVLKD+CQ+LMLMC+HVRSTF KAV DF+ S+
Sbjct: 61 DPSREVLKDACQDLMLMCQHVRSTFDKAVSDFKISK 96
>gi|388497488|gb|AFK36810.1| unknown [Lotus japonicus]
Length = 104
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/104 (74%), Positives = 91/104 (87%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+ D+S +TFSLT+EDHT ANA+R+TLNQDPRVTFCGYSIPHPSD RVNIRVQTTG
Sbjct: 1 MEHGSHSDESRSTFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKID 104
+PAREVLKDSCQ +MLMC+HVR TF KAV+DF++ + + M ID
Sbjct: 61 EPAREVLKDSCQHMMLMCQHVRGTFDKAVNDFKSKKGGKDMDID 104
>gi|158828223|gb|ABW81101.1| RNApol24 [Cleome spinosa]
Length = 109
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/103 (76%), Positives = 88/103 (85%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+F D S+ATFSLTEEDHTLANAVRF LNQDPRVTFCGYSIPHPS ARVNIRVQTTG
Sbjct: 1 MEHGSFTDHSHATFSLTEEDHTLANAVRFVLNQDPRVTFCGYSIPHPSHARVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKI 103
DPAREVLKD+CQ+LMLM RHVR F AV DF+ + ++M +
Sbjct: 61 DPAREVLKDACQDLMLMNRHVRGVFDNAVADFKKGNQTESMDV 103
>gi|357461253|ref|XP_003600908.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
gi|355489956|gb|AES71159.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
Length = 218
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 75/100 (75%), Positives = 88/100 (88%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG + D S +TFSL EDHT +N+VRFTLNQDPRVTFCGYSIPHPS+ RVN+RVQTTG
Sbjct: 104 MEHGLYSDLSKSTFSLVNEDHTFSNSVRFTLNQDPRVTFCGYSIPHPSENRVNVRVQTTG 163
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQA 100
DPA EVLKD CQ+LMLMC+HVRSTF KAV+DF+TS+ V++
Sbjct: 164 DPASEVLKDGCQDLMLMCQHVRSTFGKAVNDFKTSKSVRS 203
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 29/34 (85%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQD 34
MEHG++ D S +TFSL +EDHT AN+VRFTLNQD
Sbjct: 1 MEHGSYSDLSKSTFSLVDEDHTFANSVRFTLNQD 34
>gi|357502661|ref|XP_003621619.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
gi|355496634|gb|AES77837.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
Length = 115
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 75/100 (75%), Positives = 89/100 (89%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG++ D S +TFSL +EDHT AN+VRF LNQDPRVTFCGYSIPHPS+ RVN+RVQTTG
Sbjct: 1 MEHGSYSDLSKSTFSLVDEDHTFANSVRFILNQDPRVTFCGYSIPHPSENRVNVRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQA 100
DPA EVLKD CQ+LMLMC+HVRSTF KAV+DF+TS+ V++
Sbjct: 61 DPASEVLKDGCQDLMLMCQHVRSTFGKAVNDFKTSKSVRS 100
>gi|356573936|ref|XP_003555110.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Glycine max]
Length = 106
Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/106 (71%), Positives = 90/106 (84%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
ME G++ DQS +TFSL +EDHT AN+VRFTLNQDPRVTFCGYSIPHPSD RVNIRVQTTG
Sbjct: 1 MELGSYSDQSKSTFSLVDEDHTFANSVRFTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDSK 106
DPAREVLKD CQ+LMLMC+HVRSTF A+ DF+ ++ ++D+K
Sbjct: 61 DPAREVLKDGCQDLMLMCQHVRSTFDNAMTDFKRTQTNTEQEMDTK 106
>gi|224059388|ref|XP_002299838.1| predicted protein [Populus trichocarpa]
gi|222847096|gb|EEE84643.1| predicted protein [Populus trichocarpa]
Length = 102
Score = 164 bits (414), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/95 (76%), Positives = 85/95 (89%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+ D S+ATF +EDHTLAN+VRF LNQDPRV+FCGYSIPHPSDA+VNIRVQTTG
Sbjct: 1 MEHGSVRDPSSATFCFVDEDHTLANSVRFALNQDPRVSFCGYSIPHPSDAKVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTS 95
DPAREVLKD+CQ LM+MC+HVRST KAVDD+R++
Sbjct: 61 DPAREVLKDACQNLMVMCQHVRSTLDKAVDDYRSN 95
>gi|449459084|ref|XP_004147276.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Cucumis sativus]
Length = 104
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 89/103 (86%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+F D++ +TFS+ +EDHTLAN +R+TLNQDPRVTFCGYSIPHPSD RVNIRVQTTG
Sbjct: 1 MEHGSFTDETKSTFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKI 103
DPAREVLKD+CQ LM++C+HVR+TF KAV D + + V+ + I
Sbjct: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINI 103
>gi|449455052|ref|XP_004145267.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Cucumis sativus]
gi|449516242|ref|XP_004165156.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like isoform 1 [Cucumis sativus]
gi|449516244|ref|XP_004165157.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like isoform 2 [Cucumis sativus]
Length = 108
Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 72/96 (75%), Positives = 86/96 (89%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+F D++ +TFS+ +EDHTLANA+R TLNQDPRVTFCGYSIPHPSD RVNIRVQTTG
Sbjct: 1 MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
DPAREVLKD+CQ LM++C+HVR+TF KAV DF ++
Sbjct: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK 96
>gi|242085108|ref|XP_002442979.1| hypothetical protein SORBIDRAFT_08g005640 [Sorghum bicolor]
gi|241943672|gb|EES16817.1| hypothetical protein SORBIDRAFT_08g005640 [Sorghum bicolor]
Length = 108
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 87/104 (83%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+ D S++TFS+ EEDHTLAN+VRF LNQDPRV FCGYSIPHP++ +VNIRVQTTG
Sbjct: 1 MEHGSLDDSSSSTFSIMEEDHTLANSVRFVLNQDPRVAFCGYSIPHPAENKVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKID 104
DPA++VLKD+ Q+LM+MC+H+R T AV DFR ++ +AM ID
Sbjct: 61 DPAKDVLKDALQDLMVMCQHIRGTLDTAVADFRGNKTAEAMDID 104
>gi|357157134|ref|XP_003577696.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Brachypodium distachyon]
Length = 107
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 89/107 (83%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+ D S ++FS+ EEDHTLAN+VRF LNQDPRV FCGYSIPHP+D +VNIRVQTTG
Sbjct: 1 MEHGSLADSSASSFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDSKE 107
DPA++V+KD+ Q+LM+M +HVR+TF KAV DF+++ + M +D+ +
Sbjct: 61 DPAKDVMKDALQDLMVMGQHVRATFDKAVADFKSNIPAEQMDVDANK 107
>gi|115487728|ref|NP_001066351.1| Os12g0194700 [Oryza sativa Japonica Group]
gi|77553282|gb|ABA96078.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113648858|dbj|BAF29370.1| Os12g0194700 [Oryza sativa Japonica Group]
gi|125578768|gb|EAZ19914.1| hypothetical protein OsJ_35508 [Oryza sativa Japonica Group]
gi|215768489|dbj|BAH00718.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218186562|gb|EEC68989.1| hypothetical protein OsI_37758 [Oryza sativa Indica Group]
Length = 108
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 84/107 (78%), Gaps = 1/107 (0%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+ D + +TFS+ EEDHTLAN+VRF LNQDPRV FCGYSIPHP+D +VNIRVQTTG
Sbjct: 1 MEHGSVTDSTASTFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDSKE 107
DPA++VLKDS Q+LM+MC+HVR TF AV FR + M ID +
Sbjct: 61 DPAKDVLKDSLQDLMVMCQHVRGTFDTAVTQFRQNNPT-GMNIDQNK 106
>gi|357160551|ref|XP_003578801.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Brachypodium distachyon]
Length = 108
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 85/104 (81%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+ D + ++FS+ EEDHTLAN+VRF LNQDPRV FCGYSIPHP+D +VNIRVQTTG
Sbjct: 1 MEHGSVADSTASSFSIMEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKID 104
DPA++V+ D+ Q+LM+MC+H R TF AV DFR ++ ++ M ID
Sbjct: 61 DPAKDVMVDALQDLMVMCQHARGTFDTAVADFRANKPMERMDID 104
>gi|15227556|ref|NP_180514.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis
thaliana]
gi|79323435|ref|NP_001031443.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis
thaliana]
gi|1184686|gb|AAC49453.1| RNA polymerase I(A) and III(C) 14 kDa subunit [Arabidopsis
thaliana]
gi|1184688|gb|AAC49454.1| Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa
subunit [Arabidopsis thaliana]
gi|3980382|gb|AAC95185.1| DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14)
[Arabidopsis thaliana]
gi|26452894|dbj|BAC43525.1| putative DNA-directed RNA polymerase 14 kDa subunit AtRPAC14
[Arabidopsis thaliana]
gi|28827296|gb|AAO50492.1| putative DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14)
[Arabidopsis thaliana]
gi|330253175|gb|AEC08269.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis
thaliana]
gi|330253176|gb|AEC08270.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis
thaliana]
Length = 122
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 79/93 (84%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+F + S+A+F+L+EEDHTLANAVRF LNQDPRVT Y+IPHPS +VNIRVQTTG
Sbjct: 1 MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
DPAREV KD+CQELM M RHVRS F KAV +++
Sbjct: 61 DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93
>gi|297822669|ref|XP_002879217.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325056|gb|EFH55476.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 122
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/92 (72%), Positives = 78/92 (84%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+F + S+A+F+L+EEDHTLANAVRF LNQDPRVT Y+IPHPS +VNIRVQTTG
Sbjct: 1 MEHGSFTNDSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDF 92
DPAREV KD+CQELM M RHVRS F KAV ++
Sbjct: 61 DPAREVFKDACQELMQMNRHVRSVFDKAVTEY 92
>gi|242068175|ref|XP_002449364.1| hypothetical protein SORBIDRAFT_05g008640 [Sorghum bicolor]
gi|241935207|gb|EES08352.1| hypothetical protein SORBIDRAFT_05g008640 [Sorghum bicolor]
Length = 107
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 82/107 (76%), Gaps = 1/107 (0%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+ D +++TFS+ EEDHTLAN+ RF LNQDPRV FCGYSIPHP++ +VNIRVQTTG
Sbjct: 1 MEHGSLTDSTSSTFSIMEEDHTLANSARFVLNQDPRVAFCGYSIPHPAEKKVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRT-SEKVQAMKIDSK 106
D A++VLKD+ Q LM+MC+HVR T AV + R + + M +D K
Sbjct: 61 DAAKDVLKDALQNLMIMCQHVRGTLDNAVANHRAKNTTAEQMDVDRK 107
>gi|413920766|gb|AFW60698.1| hypothetical protein ZEAMMB73_622044 [Zea mays]
Length = 106
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 80/104 (76%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
MEHG+ D +++TFS+ +EDHTLAN+ RF LNQDPRV FCGY+IPHPS+ +VNIR+QTTG
Sbjct: 1 MEHGSLTDSTSSTFSIMDEDHTLANSARFVLNQDPRVAFCGYTIPHPSEKKVNIRLQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKID 104
D A++VLKD+ Q LM+MC+HVR T AV + R + M +D
Sbjct: 61 DAAKDVLKDALQNLMIMCQHVRGTMDTAVVNHRAKNAAEEMDVD 104
>gi|116781945|gb|ABK22308.1| unknown [Picea sitchensis]
gi|224285983|gb|ACN40703.1| unknown [Picea sitchensis]
Length = 107
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 80/105 (76%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
ME G+ + ++TF+ +EDHTL N++R+ LN DPRV FCGYSIPHPSD RVNIRVQTTG
Sbjct: 1 MELGSVENPRSSTFAFNDEDHTLGNSLRYVLNHDPRVEFCGYSIPHPSDNRVNIRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDS 105
DPA++VLKD+ Q+LM++C+ VR TF KAV F + V+ M +S
Sbjct: 61 DPAKDVLKDALQDLMVVCQQVRQTFGKAVVTFNATRGVKEMSTES 105
>gi|168025386|ref|XP_001765215.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683534|gb|EDQ69943.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 118
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 82/105 (78%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
ME G+ D NATFS+++EDHTL N++RF LN+DPRV FCGYS+PHPS+ R+N+RVQTTG
Sbjct: 1 MELGSETDPRNATFSISDEDHTLGNSLRFVLNKDPRVAFCGYSVPHPSETRINVRVQTTG 60
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDS 105
PAR+VLKD+ +LM M +HV +TF +AV+ F+ ++ V + + S
Sbjct: 61 VPARDVLKDALNDLMAMNQHVSTTFNRAVETFKANQGVNELSMKS 105
>gi|302815190|ref|XP_002989277.1| hypothetical protein SELMODRAFT_160051 [Selaginella moellendorffii]
gi|300143020|gb|EFJ09715.1| hypothetical protein SELMODRAFT_160051 [Selaginella moellendorffii]
Length = 101
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 74/99 (74%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
+E G+ + ++TF + +EDHT N++R+ LN DPRVTFCGYS+PHPSD RVN+RVQTTG
Sbjct: 3 VELGSDVEPESSTFCINDEDHTFGNSIRYVLNGDPRVTFCGYSVPHPSDNRVNVRVQTTG 62
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
+ A+ V KD+ ++L+L+C HV S F +V F+ S++ Q
Sbjct: 63 ESAKSVFKDALRDLVLICDHVCSAFDDSVASFKRSQQQQ 101
>gi|302817582|ref|XP_002990466.1| hypothetical protein SELMODRAFT_49918 [Selaginella
moellendorffii]
gi|300141634|gb|EFJ08343.1| hypothetical protein SELMODRAFT_49918 [Selaginella
moellendorffii]
Length = 92
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 67/87 (77%)
Query: 11 NATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDS 70
++TF EDHTL N++RF LN+DPRV FCGYS+PHPS+ +VN+RVQTTG PA+EV KD+
Sbjct: 3 SSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQTTGAPAKEVFKDA 62
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSEK 97
+++ +C HV +T AV+ F+ +E+
Sbjct: 63 LLDMVAICEHVSTTMDSAVERFKANEQ 89
>gi|302804069|ref|XP_002983787.1| hypothetical protein SELMODRAFT_49652 [Selaginella
moellendorffii]
gi|300148624|gb|EFJ15283.1| hypothetical protein SELMODRAFT_49652 [Selaginella
moellendorffii]
Length = 92
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 65/87 (74%)
Query: 11 NATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDS 70
++TF EDHTL N++RF LN+DPRV FCGYS+PHPS+ +VN+RVQTTG P +EV KD+
Sbjct: 3 SSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQTTGAPGKEVFKDA 62
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSEK 97
+++ +C HV +T AV F+ +E+
Sbjct: 63 LLDMVAICEHVSTTMDSAVGRFKANEQ 89
>gi|302843852|ref|XP_002953467.1| hypothetical protein VOLCADRAFT_63657 [Volvox carteri f.
nagariensis]
gi|300261226|gb|EFJ45440.1| hypothetical protein VOLCADRAFT_63657 [Volvox carteri f.
nagariensis]
Length = 104
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
ATFS+ EEDHTLAN++RF LN++P V+FCGYS+PHPS+ VN+RVQTTG A + +K +
Sbjct: 11 ATFSIEEEDHTLANSLRFFLNKNPHVSFCGYSMPHPSEELVNLRVQTTGQITAMQAVKAA 70
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSEKVQAMK 102
C+++ +C H+RST +KAV +F+ E+ + K
Sbjct: 71 CEDMQQVCDHMRSTLSKAVAEFQQQEQSREQK 102
>gi|449472913|ref|XP_004153732.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like, partial [Cucumis sativus]
Length = 59
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 54/59 (91%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
MEHG+F D++ +TFS+ +EDHTLANA+R TLNQDPRVTFCGYSIPHPSD RVNIRVQTT
Sbjct: 1 MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59
>gi|159490407|ref|XP_001703168.1| RNA polymerase subunit [Chlamydomonas reinhardtii]
gi|158270708|gb|EDO96544.1| RNA polymerase subunit [Chlamydomonas reinhardtii]
Length = 99
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
ATFS+ EEDHTLAN++RF LN++P V FCGYS+PHPS+ VN+RVQTTG AR +K +C
Sbjct: 11 ATFSIEEEDHTLANSLRFFLNKNPHVAFCGYSMPHPSEELVNLRVQTTG-AARGAVKAAC 69
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSE 96
+++ +C H+RST AV F+ E
Sbjct: 70 EDVSQVCGHMRSTLQDAVHKFQAEE 94
>gi|260812261|ref|XP_002600839.1| hypothetical protein BRAFLDRAFT_75869 [Branchiostoma floridae]
gi|229286129|gb|EEN56851.1| hypothetical protein BRAFLDRAFT_75869 [Branchiostoma floridae]
Length = 110
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 68/92 (73%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D+S TF L +EDHTL NA+R+ + ++P V FCGYS+PHPS+ ++N+R+Q+ G PA ++L
Sbjct: 7 DESCQTFVLHDEDHTLGNALRYMIMKNPDVDFCGYSVPHPSEHKINLRIQSRGPPAADIL 66
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
+ EL +C HV++TF AV++++ ++ +Q
Sbjct: 67 RRGLTELNALCEHVQNTFEGAVEEYKMNQAMQ 98
>gi|327277356|ref|XP_003223431.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Anolis carolinensis]
Length = 116
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D+S TF L EDHTL N++R+ + +DP V FCGYSI HPS++++N R+QT G PA E+
Sbjct: 22 DKSCVTFVLHNEDHTLGNSLRYMIMKDPEVEFCGYSITHPSESKINFRIQTKGGIPAAEM 81
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFRT 94
+ +EL+ +C+HV STF +V+++++
Sbjct: 82 FQKGLEELIGVCQHVLSTFEASVEEYKS 109
>gi|384248587|gb|EIE22071.1| RBP11-like subunits of RNA polymerase [Coccomyxa subellipsoidea
C-169]
Length = 105
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Query: 5 AFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PA 63
A G + TF+L +EDHTLAN++R LN++P V+F GYSIPHPS+ VN+R+QTTG+ A
Sbjct: 4 ATGADTGVTFALEDEDHTLANSLRHLLNRNPHVSFVGYSIPHPSEKVVNLRIQTTGEISA 63
Query: 64 REVLKDSCQELMLMCRHVRSTF 85
E L+ +CQ L +C H+++TF
Sbjct: 64 VEALRQACQSLKQVCEHIKATF 85
>gi|50554135|ref|XP_504476.1| YALI0E27676p [Yarrowia lipolytica]
gi|49650345|emb|CAG80079.1| YALI0E27676p [Yarrowia lipolytica CLIB122]
Length = 140
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
GA D++ +F TEEDHT+ NA+++ + ++P V FCGYSIPHPS+A++NIR+QT GD
Sbjct: 47 GASADKTACSFQFTEEDHTIGNALQYIIMKNPEVEFCGYSIPHPSEAKLNIRIQTYGDIT 106
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRT 94
A E L+ +L+ C V++ F AV DF +
Sbjct: 107 AIEALQKGLDDLIQACDVVKNKFTDAVTDFTS 138
>gi|156378249|ref|XP_001631056.1| predicted protein [Nematostella vectensis]
gi|156218089|gb|EDO38993.1| predicted protein [Nematostella vectensis]
Length = 85
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 56/78 (71%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D+S TF L +EDHTL N++R+ + ++P V FCGYSIPHPS++++N+R+QT G PA +VL
Sbjct: 1 DESCMTFVLHDEDHTLGNSLRYIIMKNPDVKFCGYSIPHPSESKINLRIQTHGTPASDVL 60
Query: 68 KDSCQELMLMCRHVRSTF 85
+ EL MC H + F
Sbjct: 61 RRGLSELTAMCEHALAAF 78
>gi|255075357|ref|XP_002501353.1| predicted protein [Micromonas sp. RCC299]
gi|226516617|gb|ACO62611.1| predicted protein [Micromonas sp. RCC299]
Length = 100
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSC 71
TF+L +EDHT+ NAVR+ LN++P+V+ GYS+PHP + VN+RVQTTG+ A ++D+
Sbjct: 7 TFTLKDEDHTMGNAVRYMLNKNPQVSLAGYSVPHPMEKSVNVRVQTTGEVTATAAMRDAL 66
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDSK 106
+++ +C HV TF AV DF+ +++ M DSK
Sbjct: 67 LDIISVCDHVHDTFDTAVADFK-AKQPAPMDADSK 100
>gi|406607619|emb|CCH41090.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 130
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
GA D + A+F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+QT GD
Sbjct: 34 GATEDGTAASFQILDEDHTLGNALRYIIMKNPDVEFCGYSIPHPSETKLNIRIQTYGDMT 93
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVD 90
A E L +L MC H+ FA+ ++
Sbjct: 94 AVEALHKGLDDLSDMCTHIEDKFAEKIN 121
>gi|126308959|ref|XP_001380567.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Monodelphis domestica]
Length = 134
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D + TF L +EDHTL N++R+ + ++P V FCGYSI HPS++++N R+QT G
Sbjct: 33 MVQAAGTDGNCVTFVLYDEDHTLGNSLRYMIMKNPEVEFCGYSITHPSESKINFRIQTKG 92
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
PA E + ELM +C+HV + F ++ +++ ++V+
Sbjct: 93 GLPAVEPFRQGLNELMDVCQHVLNKFEASIKNYKDQKEVE 132
>gi|340370096|ref|XP_003383582.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Amphimedon queenslandica]
Length = 107
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D + TF L +EDHTL NA+R+ L ++P V+FCGYS PHPS+ ++N+R+QTTG A EVL
Sbjct: 18 DVTCMTFVLQDEDHTLGNALRWILIKNPDVSFCGYSTPHPSERKINLRIQTTGISATEVL 77
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
+ ++L + +H+ T+ +V F+ E
Sbjct: 78 RRGLEDLRELFQHIHKTYEASVQQFKADE 106
>gi|218185462|gb|EEC67889.1| hypothetical protein OsI_35557 [Oryza sativa Indica Group]
Length = 126
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 7/109 (6%)
Query: 1 MEHGAFG---DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
+ HGAF Q+ + T+ H+ + L + P SIPHP+D +VNIRVQ
Sbjct: 22 LAHGAFLHPLGQAGSYLQATKRPHSASTHSSQGLCRQPNTP----SIPHPADNKVNIRVQ 77
Query: 58 TTGDPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDSK 106
TTGDPA +V KD Q+L++MC+HVR TF AV DFR+ Q M IDSK
Sbjct: 78 TTGDPAIDVFKDGLQDLIVMCQHVRGTFDNAVVDFRSKVPAQQMDIDSK 126
>gi|145329983|ref|NP_001077977.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana]
gi|330253177|gb|AEC08271.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana]
Length = 139
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 48/59 (81%)
Query: 35 PRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PRVT Y+IPHPS +VNIRVQTTGDPAREV KD+CQELM M RHVRS F KAV +++
Sbjct: 52 PRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 110
>gi|260948950|ref|XP_002618772.1| hypothetical protein CLUG_02231 [Clavispora lusitaniae ATCC 42720]
gi|238848644|gb|EEQ38108.1| hypothetical protein CLUG_02231 [Clavispora lusitaniae ATCC 42720]
Length = 154
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 3/96 (3%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
G+ D + A+F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+
Sbjct: 58 GSSDDGTAASFQVLDEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNIT 117
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVD--DFRTSE 96
A E L L +C HV TF + VD +F T E
Sbjct: 118 ALEALHQGLDNLSELCTHVEETFTEKVDAGNFATVE 153
>gi|365988010|ref|XP_003670836.1| hypothetical protein NDAI_0F02750 [Naumovozyma dairenensis CBS 421]
gi|343769607|emb|CCD25593.1| hypothetical protein NDAI_0F02750 [Naumovozyma dairenensis CBS 421]
Length = 149
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
++ GA D +A+F + +EDHTL NA+R+ + ++P+V FCGYSIPHPS+ +NIR+QT G
Sbjct: 57 LQQGASEDGCSASFQILQEDHTLGNALRYIIMKNPQVEFCGYSIPHPSEEFLNIRIQTYG 116
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDF 92
+ A E L Q+LM +C V F + + D
Sbjct: 117 EITAVEALHKGLQDLMDLCDVVEEKFTQKIRDM 149
>gi|108864144|gb|ABA92074.2| expressed protein [Oryza sativa Japonica Group]
gi|215678562|dbj|BAG92217.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 126
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 7/109 (6%)
Query: 1 MEHGAFG---DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
+ HGAF Q+ + T+ H+ + L + P SIPHP+D +VNIRVQ
Sbjct: 22 LAHGAFLHPLGQAGSYVQATKRPHSASTHSSQGLCRQPNTP----SIPHPADNKVNIRVQ 77
Query: 58 TTGDPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDSK 106
TTGDPA +V KD Q+L++MC+HVR TF AV DFR+ Q M IDSK
Sbjct: 78 TTGDPAIDVFKDGLQDLIVMCQHVRGTFDNAVVDFRSKVPAQQMDIDSK 126
>gi|254572994|ref|XP_002493606.1| hypothetical protein [Komagataella pastoris GS115]
gi|238033405|emb|CAY71427.1| hypothetical protein PAS_chr4_0925 [Komagataella pastoris GS115]
gi|328354564|emb|CCA40961.1| DNA-directed RNA polymerase III subunit C19 [Komagataella pastoris
CBS 7435]
Length = 136
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
GA D + A+F + +EDHTL N++R+ + ++P V +CGYSIPHPS+A++NIR+QT G
Sbjct: 40 GASEDGTAASFQILDEDHTLGNSLRYIIIKNPEVEYCGYSIPHPSEAKLNIRIQTYGGMT 99
Query: 63 AREVLKDSCQELMLMCRHVRSTFAK--AVDDFRTSE 96
A E L+ +L+ +C HV F+ A D+ T E
Sbjct: 100 AVEALRKGLDDLVDICDHVEKKFSDVIAAGDYSTEE 135
>gi|395537015|ref|XP_003770503.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Sarcophilus harrisii]
Length = 114
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT- 59
M A D + TF L +EDHTL N++R+ + ++P V FCGYSI HPS++++N R+QT
Sbjct: 13 MVQAAGTDGNCVTFVLYDEDHTLGNSLRYMIMKNPEVEFCGYSITHPSESKINFRIQTKE 72
Query: 60 GDPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
G PA E + ELM +C+HV + F ++ +++ ++V+
Sbjct: 73 GLPAVEPFRQGLNELMDVCQHVLNKFEASIKNYKDQKQVE 112
>gi|115484743|ref|NP_001067515.1| Os11g0218100 [Oryza sativa Japonica Group]
gi|113644737|dbj|BAF27878.1| Os11g0218100, partial [Oryza sativa Japonica Group]
Length = 143
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 7/109 (6%)
Query: 1 MEHGAFG---DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
+ HGAF Q+ + T+ H+ + L + P SIPHP+D +VNIRVQ
Sbjct: 39 LAHGAFLHPLGQAGSYVQATKRPHSASTHSSQGLCRQPNTP----SIPHPADNKVNIRVQ 94
Query: 58 TTGDPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDSK 106
TTGDPA +V KD Q+L++MC+HVR TF AV DFR+ Q M IDSK
Sbjct: 95 TTGDPAIDVFKDGLQDLIVMCQHVRGTFDNAVVDFRSKVPAQQMDIDSK 143
>gi|387018232|gb|AFJ51234.1| DNA-directed RNA polymerases I and III subunit RPAC2-like [Crotalus
adamanteus]
Length = 114
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D++ TF L EDHTL N++R+ + ++P + FCGYSI HPS++++N R+QT G PA +
Sbjct: 22 DKTCVTFVLNNEDHTLGNSLRYMIMKNPEIEFCGYSITHPSESKINFRIQTRGGLPAIDA 81
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
+ ++L +C+HV STF +V++++ ++Q
Sbjct: 82 FQKGLEDLTGVCQHVLSTFEASVEEYKNDVRMQ 114
>gi|115638551|ref|XP_794921.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Strongylocentrotus purpuratus]
Length = 117
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 53/88 (60%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
TF + EDHTL NA+R+ + +DP V FCGYS+PHP++ R+N R+QT G PA +V
Sbjct: 30 VTFVMHNEDHTLGNALRYMVMKDPDVEFCGYSVPHPTENRINFRIQTKGAPAGDVFGKGL 89
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
L +C H++ TF + F+ Q
Sbjct: 90 ANLSEVCDHIQQTFKDTIQKFKEGMDTQ 117
>gi|401623947|gb|EJS42026.1| rpc19p [Saccharomyces arboricola H-6]
Length = 142
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D ++A+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIR+QT G+ A +
Sbjct: 57 DGTSASFQIVEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDA 116
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L+ Q+LM +C V S F +++
Sbjct: 117 LQKGLQDLMDLCDVVESKFTESI 139
>gi|320580545|gb|EFW94767.1| DNA-directed RNA polymerase subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 125
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
G+ D + A+F +++EDHTL NA+R+ + ++P V FCGYSIPHP+++++NIR+QT G
Sbjct: 29 GSTPDGTAASFQISDEDHTLGNALRYMIMKNPEVEFCGYSIPHPAESKMNIRIQTYGGMS 88
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVD--DFRTSE 96
A E L +L+ +C HV F + + D+ T E
Sbjct: 89 AVEALHKGLDDLVDLCTHVEDVFGEKISSRDYGTEE 124
>gi|384500104|gb|EIE90595.1| hypothetical protein RO3G_15306 [Rhizopus delemar RA 99-880]
Length = 156
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA 63
G+ GD + TF EDHTL N++R +N++ V FCGYSIPHPS+A++NIR+QTT
Sbjct: 58 GSHGDPTALTFCFKNEDHTLGNSLRHVINKNRDVDFCGYSIPHPSEAKMNIRIQTTDKTT 117
Query: 64 R-EVLKDSCQELMLMCRHVRSTFAK 87
+ LK Q L M HVRST+A+
Sbjct: 118 SIDALKTGLQNLYDMVAHVRSTYAE 142
>gi|354468533|ref|XP_003496707.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Cricetulus griseus]
Length = 133
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRQCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ D++
Sbjct: 89 TLPAVEPFQKGLNELMNVCQHVLDKFEASIKDYK 122
>gi|238231741|ref|NP_001154057.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
gi|225703254|gb|ACO07473.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
gi|225703690|gb|ACO07691.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
gi|225704120|gb|ACO07906.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
Length = 115
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D+ TF L EEDHTL N++R+ + + V FCGYSI HPS++++N R+QT G PA E
Sbjct: 21 DEGCVTFVLHEEDHTLGNSLRYMVMKSLDVDFCGYSITHPSESKINFRIQTRGGVPAVEP 80
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFRTSEK 97
L+ EL +C+HV +TF ++V +FR+ ++
Sbjct: 81 LRRGLNELSDVCQHVLNTFQRSVSEFRSQQE 111
>gi|198419255|ref|XP_002121265.1| PREDICTED: similar to LOC494863 protein [Ciona intestinalis]
Length = 109
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 7 GD-QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE 65
GD ++ TF + EDHTL NA+R+ L ++P + FCGYSIPHP++ ++N+R+QT G A E
Sbjct: 18 GDSETCCTFIIHNEDHTLGNALRYILMKNPDIEFCGYSIPHPAENKMNLRIQTRGISATE 77
Query: 66 VLKDSCQELMLMCRHVRSTFAKAVDDF 92
LK ++L +C H+ TF +V ++
Sbjct: 78 ALKKGLKDLNSVCEHILKTFESSVKEY 104
>gi|148232551|ref|NP_001088155.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Xenopus
laevis]
gi|82180681|sp|Q5XK67.1|RPAC2_XENLA RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D
gi|52789423|gb|AAH83053.1| LOC494863 protein [Xenopus laevis]
Length = 114
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREV 66
++S TF L EEDHTL N++R+ + ++P V FCGYSI HPS+ ++N R+QT G PA E
Sbjct: 20 EESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEP 79
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFR 93
+ EL+ +C+HV +TF ++ +++
Sbjct: 80 FRRGLNELVDVCQHVLNTFETSIKEYK 106
>gi|366995461|ref|XP_003677494.1| hypothetical protein NCAS_0G02550 [Naumovozyma castellii CBS 4309]
gi|342303363|emb|CCC71142.1| hypothetical protein NCAS_0G02550 [Naumovozyma castellii CBS 4309]
Length = 150
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
+ GA D + A+F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ +N+R+QT G
Sbjct: 58 LPEGASEDGTCASFQIVDEDHTLGNALRYIIMKNPNVEFCGYSIPHPSENFLNVRIQTYG 117
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDF 92
D A E + Q+LM +C V F +++ D
Sbjct: 118 DITAVEAFQKGLQDLMDLCDVVEDKFTQSIRDL 150
>gi|225716362|gb|ACO14027.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Esox lucius]
Length = 114
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D+ TF L EEDHTL N++R+ + ++ V FCGYSI HPS++++N R+QT G PA E
Sbjct: 21 DEGCVTFVLHEEDHTLGNSLRYMVMKNLDVDFCGYSITHPSESKINFRIQTRGAVPAVEP 80
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFRT 94
L+ EL +C+HV +TF K V +FR+
Sbjct: 81 LRRGLTELTDLCQHVLNTFEKRVSEFRS 108
>gi|344237268|gb|EGV93371.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Cricetulus
griseus]
Length = 116
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 12 MVQAAGTDRQCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 71
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ D++
Sbjct: 72 TLPAVEPFQKGLNELMNVCQHVLDKFEASIKDYK 105
>gi|383872945|ref|NP_001244388.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Macaca
mulatta]
gi|355700890|gb|EHH28911.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Macaca
mulatta]
gi|380787579|gb|AFE65665.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Macaca mulatta]
gi|383413361|gb|AFH29894.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Macaca mulatta]
gi|384942556|gb|AFI34883.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Macaca mulatta]
Length = 133
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ D++
Sbjct: 89 TLPAVEPFQRGLNELMSVCQHVLDKFEASIKDYK 122
>gi|410076614|ref|XP_003955889.1| hypothetical protein KAFR_0B04570 [Kazachstania africana CBS 2517]
gi|372462472|emb|CCF56754.1| hypothetical protein KAFR_0B04570 [Kazachstania africana CBS 2517]
Length = 131
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D ++A+F + EEDHTL NA+R+ + ++P+V FCGYSIPHPS+ +NIR+QT G+ A +
Sbjct: 46 DGTSASFQIVEEDHTLGNALRYIIMKNPQVEFCGYSIPHPSENLLNIRIQTYGEITAVDA 105
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDF 92
LK +LM +C V TF + + +
Sbjct: 106 LKKGLADLMDLCDVVEETFTQRIREL 131
>gi|213512884|ref|NP_001134696.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo salar]
gi|209735308|gb|ACI68523.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo salar]
gi|303657411|gb|ADM15874.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo salar]
Length = 115
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D+ TF L EEDHTL N++R+ + ++ V FCGYSI HPS++++N R+QT G PA E
Sbjct: 21 DEGCVTFVLHEEDHTLGNSLRYMVMKNLDVDFCGYSITHPSESKINFRIQTRGGVPAVEP 80
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFRTSEK 97
L+ EL +C+HV +TF + V +FR+ ++
Sbjct: 81 LRRGLNELTDVCQHVLNTFQRRVTEFRSQQE 111
>gi|301615272|ref|XP_002937095.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Xenopus (Silurana) tropicalis]
Length = 114
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREV 66
D+S TF L EEDHTL N++R+ + ++P + FCGYSI HPS+ ++N R+QT G PA E
Sbjct: 20 DESCVTFVLHEEDHTLGNSLRYMVMKNPDIEFCGYSITHPSETKINFRIQTRNGIPAVEP 79
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFR 93
+ EL+ +C+HV +TF ++ +++
Sbjct: 80 FRRGLTELVDVCQHVLNTFEASIKEYK 106
>gi|237831979|ref|XP_002365287.1| DNA-directed RNA polymerases I and III subunit RPAC2, putative
[Toxoplasma gondii ME49]
gi|211962951|gb|EEA98146.1| DNA-directed RNA polymerases I and III subunit RPAC2, putative
[Toxoplasma gondii ME49]
gi|221486858|gb|EEE25104.1| DNA-directed RNA polymerase, putative [Toxoplasma gondii GT1]
gi|221506554|gb|EEE32171.1| DNA-directed RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 129
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKD 69
S TF+LT EDHTL N +R L + P V F GYS+PHP+ +NIR+QTTG+ A ++L++
Sbjct: 35 SQLTFTLTGEDHTLGNTIRSILVRKPGVEFAGYSVPHPTQPEMNIRLQTTGESAMQLLRE 94
Query: 70 SCQELMLMCRHVRSTFAKAVDDF 92
S +L +C H+ + + +A++DF
Sbjct: 95 SFDDLASICDHLDTLYDEALEDF 117
>gi|7705740|ref|NP_057056.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Homo sapiens]
gi|410047658|ref|XP_003952423.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Pan troglodytes]
gi|426375009|ref|XP_004054344.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Gorilla gorilla gorilla]
gi|441624152|ref|XP_004088972.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Nomascus leucogenys]
gi|11387119|sp|Q9Y2S0.1|RPAC2_HUMAN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D; AltName: Full=RNA polymerase I 16 kDa
subunit; Short=RPA16; AltName: Full=RPC16; AltName:
Full=hRPA19
gi|4689136|gb|AAD27777.1|AF077044_1 RNA polymerase I 16 kDa subunit [Homo sapiens]
gi|12654143|gb|AAH00889.1| Polymerase (RNA) I polypeptide D, 16kDa [Homo sapiens]
gi|119628820|gb|EAX08415.1| hCG2020048, isoform CRA_a [Homo sapiens]
gi|208968663|dbj|BAG74170.1| polymerase (RNA) I polypeptide D, 16kDa [synthetic construct]
gi|410217740|gb|JAA06089.1| polymerase (RNA) I polypeptide D, 16kDa [Pan troglodytes]
gi|410304014|gb|JAA30607.1| polymerase (RNA) I polypeptide D, 16kDa [Pan troglodytes]
gi|410334477|gb|JAA36185.1| polymerase (RNA) I polypeptide D, 16kDa [Pan troglodytes]
Length = 133
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ D++
Sbjct: 89 TLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYK 122
>gi|223646456|gb|ACN09986.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo
salar]
gi|223672303|gb|ACN12333.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo
salar]
Length = 102
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D+ TF L EEDHTL N++R+ + ++ V FCGYSI HPS++++N R+QT G PA E
Sbjct: 8 DEGCVTFVLHEEDHTLGNSLRYMVMKNLDVDFCGYSITHPSESKINFRIQTRGGVPAVEP 67
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFRTSEK 97
L+ EL +C+HV +TF + V +FR+ ++
Sbjct: 68 LRRGLNELTDVCQHVLNTFQRRVTEFRSQQE 98
>gi|401839526|gb|EJT42714.1| RPC19-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 142
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D +NA+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIR+QT G+ A +
Sbjct: 57 DGTNASFQIVEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSENLLNIRIQTYGEITAVDA 116
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L+ ++LM +C V + F + +
Sbjct: 117 LQKGLKDLMDLCDVVEAKFTEKI 139
>gi|308801407|ref|XP_003078017.1| trithorax-like (ISS) [Ostreococcus tauri]
gi|116056468|emb|CAL52757.1| trithorax-like (ISS) [Ostreococcus tauri]
Length = 2007
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT---TGDPAREV 66
+ ATF+L EDHTL NA+R+ LN +P VT CGYS PHP + RVN+RVQT G AR
Sbjct: 1918 AEATFTLEGEDHTLGNALRYVLNANPSVTLCGYSAPHPMERRVNVRVQTHGREGATARGA 1977
Query: 67 LKDSCQELMLMCRHVRSTFAKA 88
++D+ +++ +C HV ++ KA
Sbjct: 1978 MRDALLDVISVCDHVHESYEKA 1999
>gi|149034849|gb|EDL89569.1| rCG42593, isoform CRA_b [Rattus norvegicus]
Length = 133
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N +R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + EL+ +C+HV F +V D++
Sbjct: 89 ALPAVEPFQKGLNELLNVCQHVLVKFEASVKDYK 122
>gi|395841302|ref|XP_003793484.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Otolemur garnettii]
Length = 134
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L +DHTL N++R+ + ++P V FCGY++ HPS++++N+ +QT G
Sbjct: 29 MVQAAGIDRHRVTFVLHNKDHTLGNSLRYMIMKNPEVEFCGYTMAHPSESKINLHIQTQG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEK 97
PA E L+ ELM +C+HV F ++ D++ +K
Sbjct: 89 ALPAVEPLQRGLNELMNVCQHVLDKFEASIKDYKEDQK 126
>gi|241958198|ref|XP_002421818.1| DNA-directed RNA polymerase subunit, common to RNA polymerases I
and III, putative [Candida dubliniensis CD36]
gi|223645163|emb|CAX39762.1| DNA-directed RNA polymerase subunit, common to RNA polymerases I
and III, putative [Candida dubliniensis CD36]
Length = 130
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
GA D ++A+F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+
Sbjct: 34 GASEDGTSASFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNIS 93
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV 89
A E L L +C + F +AV
Sbjct: 94 AVEALHQGLDNLSELCSAIEDKFDEAV 120
>gi|365758721|gb|EHN00549.1| Rpc19p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 156
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D +NA+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIR+QT G+ A +
Sbjct: 71 DGTNASFQIVEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSENLLNIRIQTYGEITAVDA 130
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L+ ++LM +C V + F + +
Sbjct: 131 LQKGLKDLMDLCDVVEAKFTEKI 153
>gi|6677791|ref|NP_033113.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1 [Mus
musculus]
gi|11387094|sp|P97304.1|RPAC2_MOUSE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D; AltName: Full=RNA polymerase I 16 kDa
subunit; Short=RPA16
gi|1778684|dbj|BAA13139.1| RPA16 [Mus musculus]
gi|12833069|dbj|BAB22376.1| unnamed protein product [Mus musculus]
gi|148673878|gb|EDL05825.1| RNA polymerase 1-3, isoform CRA_a [Mus musculus]
Length = 133
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N +R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + EL+ +C+HV F ++ D++
Sbjct: 89 ALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYK 122
>gi|255713672|ref|XP_002553118.1| KLTH0D09350p [Lachancea thermotolerans]
gi|238934498|emb|CAR22680.1| KLTH0D09350p [Lachancea thermotolerans CBS 6340]
Length = 146
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D + A+F ++EEDHTL NA+R+ + ++P V FCGYSIPHPS+ +N+R+QT G A EV
Sbjct: 61 DGTCASFQISEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSETLLNLRIQTYGKFTAVEV 120
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L+ Q+LM +C V F + +
Sbjct: 121 LQKGLQDLMDLCDAVEDKFTQRI 143
>gi|326432315|gb|EGD77885.1| hypothetical protein PTSG_09519 [Salpingoeca sp. ATCC 50818]
Length = 164
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG-----DP 62
D +ATF + EDHTL N++R+ LN+DPRV FCGYS PHPSD + +RVQ +P
Sbjct: 35 DPQSATFVIANEDHTLGNSLRWILNRDPRVDFCGYSQPHPSDKLIKLRVQPKPVEEGEEP 94
Query: 63 --AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKV 98
A EVL+D+ + LM MC H+ T +R + +
Sbjct: 95 VDATEVLRDALKNLMQMCDHMSETMQTQARLYRQQQGL 132
>gi|448509278|ref|XP_003866104.1| Rpc19 RNA polymerases I and III subunit AC19 [Candida orthopsilosis
Co 90-125]
gi|380350442|emb|CCG20664.1| Rpc19 RNA polymerases I and III subunit AC19 [Candida orthopsilosis
Co 90-125]
Length = 125
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
GA D S+A+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+
Sbjct: 29 GASEDGSSASFQILEEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNIS 88
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV 89
A E L L +C V F + +
Sbjct: 89 AVEALHQGLDNLSELCGVVEEKFEQKL 115
>gi|345328398|ref|XP_001514864.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Ornithorhynchus anatinus]
Length = 114
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D + TF L +EDHTL N++R+ + ++P V FCGYSI HPS++++N R+QT G
Sbjct: 13 MVQAAGTDGNCVTFVLHDEDHTLGNSLRYMVMKNPEVEFCGYSITHPSESKINFRIQTRG 72
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
PA E + EL +C+HV + F +V +++ +V+
Sbjct: 73 GLPAVEPFRQGLNELTDVCQHVLNKFEASVKEYKNQMEVE 112
>gi|401406776|ref|XP_003882837.1| DNA-directed RNA polymerase I 16 kDa polypeptide,related [Neospora
caninum Liverpool]
gi|325117253|emb|CBZ52805.1| DNA-directed RNA polymerase I 16 kDa polypeptide,related [Neospora
caninum Liverpool]
Length = 129
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 58/80 (72%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQ 72
TF+LT EDHTL NA+R L + P V F GYS+PHP+ +NIR+QTTG+ A ++L++S
Sbjct: 38 TFTLTGEDHTLGNAIRSILVRKPGVEFAGYSVPHPTQPEMNIRLQTTGESAMQLLRESFD 97
Query: 73 ELMLMCRHVRSTFAKAVDDF 92
+L +C H+ + + +A+++F
Sbjct: 98 DLANICDHLDTLYDEALEEF 117
>gi|303286291|ref|XP_003062435.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455952|gb|EEH53254.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 109
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSC 71
TF+L +EDHT+ NA+R+ LN++P+V GYS+PHP + VN+RVQTTG+ A ++D+
Sbjct: 7 TFTLKDEDHTMGNAIRYMLNKNPQVALAGYSVPHPMERSVNVRVQTTGEVTATAAMRDAL 66
Query: 72 QELMLMCRHVRSTFAKAVDD 91
+++ +C HV TF A+++
Sbjct: 67 LDIISVCDHVHDTFDLAIEE 86
>gi|298706157|emb|CBJ49085.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 111
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKD 69
S+ATF +EDHTL NA+R L Q+ V FCGYS+PHPS+ ++N+R+QTTG PA E+LK+
Sbjct: 24 SSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKE 83
Query: 70 SCQELMLMCRHVRSTFAKAVDDFRTSE 96
++L +C + + + D E
Sbjct: 84 GLRDLRDLCNILEERVEREIPDAEDEE 110
>gi|6324215|ref|NP_014286.1| Rpc19p [Saccharomyces cerevisiae S288c]
gi|133371|sp|P28000.1|RPAC2_YEAST RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerases I
and III 16 kDa polypeptide; AltName: Full=RPA19
gi|172472|gb|AAA34998.1| AC19 RNA polymerase subunit [Saccharomyces cerevisiae]
gi|1183960|emb|CAA93394.1| Subunit of RNA polymerase I and III [Saccharomyces cerevisiae]
gi|1302037|emb|CAA95994.1| RPC19 [Saccharomyces cerevisiae]
gi|45269892|gb|AAS56327.1| YNL113W [Saccharomyces cerevisiae]
gi|151944423|gb|EDN62701.1| AC19 [Saccharomyces cerevisiae YJM789]
gi|190409101|gb|EDV12366.1| RNA polymerases I subunit [Saccharomyces cerevisiae RM11-1a]
gi|256273818|gb|EEU08740.1| Rpc19p [Saccharomyces cerevisiae JAY291]
gi|259149248|emb|CAY82490.1| Rpc19p [Saccharomyces cerevisiae EC1118]
gi|285814540|tpg|DAA10434.1| TPA: Rpc19p [Saccharomyces cerevisiae S288c]
gi|323335952|gb|EGA77230.1| Rpc19p [Saccharomyces cerevisiae Vin13]
gi|323346881|gb|EGA81160.1| Rpc19p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352551|gb|EGA85050.1| Rpc19p [Saccharomyces cerevisiae VL3]
gi|349580826|dbj|GAA25985.1| K7_Rpc19p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763575|gb|EHN05103.1| Rpc19p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296878|gb|EIW07979.1| Rpc19p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 142
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D ++A+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIR+QT G+ A +
Sbjct: 57 DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDA 116
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L+ ++LM +C V S F + +
Sbjct: 117 LQKGLKDLMDLCDVVESKFTEKI 139
>gi|323307474|gb|EGA60747.1| Rpc19p [Saccharomyces cerevisiae FostersO]
Length = 111
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D ++A+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIR+QT G+ A +
Sbjct: 26 DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDA 85
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L+ ++LM +C V S F + +
Sbjct: 86 LQKGLKDLMDLCDVVESKFTEKI 108
>gi|330932673|ref|XP_003303866.1| hypothetical protein PTT_16250 [Pyrenophora teres f. teres 0-1]
gi|311319853|gb|EFQ88038.1| hypothetical protein PTT_16250 [Pyrenophora teres f. teres 0-1]
Length = 126
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDS 70
A+F +EDHTL NA+R+ ++++P V FCGYSIPHPS+A++N+R+QT G VL+
Sbjct: 39 ASFQFDDEDHTLGNALRYIIHKNPDVEFCGYSIPHPSEAKMNLRIQTYDGASVYTVLEKG 98
Query: 71 CQELMLMCRHVRSTFAKAVDDF 92
++LM MC V F A D+F
Sbjct: 99 LEDLMAMCDVVEQKFTIARDEF 120
>gi|338715260|ref|XP_003363239.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC2-like [Equus caballus]
Length = 126
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 22 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 81
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ +++
Sbjct: 82 TLPAVEPFQRGLNELMNVCQHVLDKFEASIKEYK 115
>gi|444518031|gb|ELV11918.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Tupaia
chinensis]
Length = 133
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ +++
Sbjct: 89 ALPAVEPFQRGLNELMNVCQHVLDKFEASIQNYK 122
>gi|323331945|gb|EGA73357.1| Rpc19p [Saccharomyces cerevisiae AWRI796]
Length = 111
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D ++A+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIR+QT G+ A +
Sbjct: 26 DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDA 85
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L+ ++LM +C V S F + +
Sbjct: 86 LQKGLKDLMDLCDVVESKFTEKI 108
>gi|323303408|gb|EGA57204.1| Rpc19p [Saccharomyces cerevisiae FostersB]
Length = 111
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D ++A+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIR+QT G+ A +
Sbjct: 26 DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDA 85
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L+ ++LM +C V S F + +
Sbjct: 86 LQKGLKDLMDLCDVVESKFTEKI 108
>gi|345790282|ref|XP_003433343.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Canis lupus familiaris]
Length = 133
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ +++
Sbjct: 89 ALPAVEPFQRGLNELMNVCQHVLDKFEASIKEYK 122
>gi|444315668|ref|XP_004178491.1| hypothetical protein TBLA_0B01290 [Tetrapisispora blattae CBS 6284]
gi|387511531|emb|CCH58972.1| hypothetical protein TBLA_0B01290 [Tetrapisispora blattae CBS 6284]
Length = 102
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D S A+F + +EDHTL NA+R+ L ++P V FCGYSIPHPS+ +N+RVQT GD A +
Sbjct: 17 DGSAASFQIRDEDHTLGNALRYLLMRNPAVEFCGYSIPHPSEPFLNLRVQTYGDITASDA 76
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDF 92
L Q+LM +C V TF + + +
Sbjct: 77 LAQGLQDLMDLCDVVEDTFTRRIQEL 102
>gi|395850165|ref|XP_003797668.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
isoform 1 [Otolemur garnettii]
Length = 133
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L +EDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHDEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ D++
Sbjct: 89 ALPAVEPFQRGLNELMNVCQHVLDKFEASIKDYK 122
>gi|410947157|ref|XP_003980319.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Felis catus]
Length = 116
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 12 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 71
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ +++
Sbjct: 72 TLPAVEPFQRGLNELMNVCQHVLDKFEASIKEYK 105
>gi|296203610|ref|XP_002748958.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Callithrix jacchus]
Length = 133
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ +++
Sbjct: 89 ALPAVEPFQRGLNELMNVCQHVLDKFEASIKNYK 122
>gi|281344161|gb|EFB19745.1| hypothetical protein PANDA_016989 [Ailuropoda melanoleuca]
Length = 125
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 21 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 80
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ +++
Sbjct: 81 ALPAVEPFQRGLNELMNVCQHVLDKFEASIKEYK 114
>gi|385301731|gb|EIF45900.1| putative rna polymerase i and iii shared subunit rpc19 [Dekkera
bruxellensis AWRI1499]
Length = 144
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP- 62
G+ D + A F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+
Sbjct: 48 GSSEDGTIAAFQIIDEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKMNIRIQTYGEQT 107
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVD--DFRTSE 96
A + L +L +C + TF + V+ D+ T E
Sbjct: 108 AVDALHKGLDDLSKLCSFIEDTFMEKVNAKDYTTEE 143
>gi|431920979|gb|ELK18748.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Pteropus
alecto]
Length = 123
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 19 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 78
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ +++
Sbjct: 79 VLPAIEPFQRGLNELMNVCQHVLDKFEASIKEYK 112
>gi|426236489|ref|XP_004012200.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Ovis aries]
Length = 123
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 19 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 78
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ +++
Sbjct: 79 ALPAVEPFQRGLTELMNVCQHVLDKFEASIKEYK 112
>gi|51468043|ref|NP_001003888.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Danio rerio]
gi|82173244|sp|Q6DRI4.1|RPAC2_DANRE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D
gi|49619017|gb|AAT68093.1| RNA polymerase I polypeptide D [Danio rerio]
gi|133777915|gb|AAI15139.1| Zgc:136449 protein [Danio rerio]
Length = 112
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREV 66
D+ TF L EEDHTL N++R+ + + V FCGYSI HPS++++N R+QT G PA E
Sbjct: 19 DEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEP 78
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFRTSEK 97
L++ L +C+HV TF + +F+ E+
Sbjct: 79 LRNGLNNLTDVCKHVLQTFEARMKEFKEQEE 109
>gi|189190328|ref|XP_001931503.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973109|gb|EDU40608.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 126
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDS 70
A+F +EDHTL NA+R+ ++++P V FCGYSIPHPS+A++N+R+QT G VL+
Sbjct: 39 ASFQFDDEDHTLGNALRYIIHKNPDVEFCGYSIPHPSEAKMNLRIQTYDGASVYTVLEKG 98
Query: 71 CQELMLMCRHVRSTFAKAVDDF 92
++LM MC V + A D+F
Sbjct: 99 LEDLMAMCDIVEQKYTIARDEF 120
>gi|254578786|ref|XP_002495379.1| ZYRO0B09878p [Zygosaccharomyces rouxii]
gi|238938269|emb|CAR26446.1| ZYRO0B09878p [Zygosaccharomyces rouxii]
Length = 130
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D + A+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIRVQT G+ A +V
Sbjct: 45 DGTCASFQIAEEDHTLGNALRYMIMKNPDVEFCGYSIPHPSENLLNIRVQTYGNVTAVDV 104
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L Q+LM +C V F + +
Sbjct: 105 LHKGLQDLMDLCDAVEDKFTQKI 127
>gi|451854249|gb|EMD67542.1| hypothetical protein COCSADRAFT_188250 [Cochliobolus sativus
ND90Pr]
gi|452000164|gb|EMD92626.1| hypothetical protein COCHEDRAFT_1174793 [Cochliobolus
heterostrophus C5]
Length = 131
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVL 67
++ A+F EDHTL NA+R+ ++++P V FCGYSIPHPS+A++N+R+QT G VL
Sbjct: 41 ETAASFQFDGEDHTLGNALRYIIHKNPDVEFCGYSIPHPSEAKMNLRIQTYDGVSVYTVL 100
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDF 92
+ ++LM MC V F A D+F
Sbjct: 101 EKGLEDLMAMCDVVEKKFTIARDEF 125
>gi|118089544|ref|XP_426271.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Gallus gallus]
Length = 114
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D + TF L +EDHTL N++R+ + ++P V FCGY I HPS++++N R+QT G PA E
Sbjct: 20 DGNCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKINFRIQTRGSLPAVEP 79
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFR 93
+ +LM +C+HV TF K++ +R
Sbjct: 80 FRKGLNDLMGVCQHVLDTFEKSMRKYR 106
>gi|366999324|ref|XP_003684398.1| hypothetical protein TPHA_0B02920 [Tetrapisispora phaffii CBS 4417]
gi|357522694|emb|CCE61964.1| hypothetical protein TPHA_0B02920 [Tetrapisispora phaffii CBS 4417]
Length = 130
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D ++A+F ++EEDHTL NA+R + ++P V FCGYSIPHPS+ +N+R+QT G+ A E
Sbjct: 45 DGTSASFQISEEDHTLGNALRHIIMKNPEVEFCGYSIPHPSETLLNLRIQTYGNTTAVEA 104
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDF 92
L+ ++LM MC V F + + +
Sbjct: 105 LQKGLKDLMDMCDVVEEKFTQRIKEL 130
>gi|354544993|emb|CCE41718.1| hypothetical protein CPAR2_802680 [Candida parapsilosis]
Length = 125
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
GA D S+A+F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+
Sbjct: 29 GASEDGSSASFQILDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNIS 88
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV 89
A E L L +C V F + +
Sbjct: 89 AVEALHQGLDNLSELCGVVEEKFEQKL 115
>gi|221113159|ref|XP_002160299.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Hydra magnipapillata]
Length = 127
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 65/102 (63%), Gaps = 5/102 (4%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D+ TF EDHT+ N++R+ + ++P V +CGYS PHPS+ ++N+R+QT A + L
Sbjct: 23 DEKCQTFVFHNEDHTIGNSLRYMIMKNPEVQYCGYSNPHPSEPKINLRIQTHKIAAPDAL 82
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDF--RTSEKVQAMKIDSKE 107
+ +L +C HV +TF K+V +F R SEK MK DS++
Sbjct: 83 QKGLLDLQNVCDHVLATFQKSVQEFKDRASEK---MKTDSED 121
>gi|258569481|ref|XP_002543544.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903814|gb|EEP78215.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 145
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAR--EV 66
++ A+F +EDHTL NA+R+ + ++P V FCGY++PHPS+ R+N+R+QT PA EV
Sbjct: 55 ETAASFQFEKEDHTLGNALRYVIMKNPGVEFCGYTMPHPSEERMNLRIQTYS-PANVFEV 113
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
L +LM +C V TF A DDF T++
Sbjct: 114 LDKGFSDLMDLCDVVLETFTAARDDFETNK 143
>gi|213402453|ref|XP_002171999.1| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces japonicus yFS275]
gi|212000046|gb|EEB05706.1| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces japonicus yFS275]
Length = 123
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 65/102 (63%), Gaps = 6/102 (5%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDP 62
G D ++ TF + +EDHTL NA+R+ + ++P V FCGYSIPHPS+A++N+R+QT +
Sbjct: 27 GHSADYTSVTFQIQKEDHTLGNALRYMIMKNPDVEFCGYSIPHPSEAKMNLRIQTKSTTT 86
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKID 104
A + LK +LM +C V +F + + SE +M++D
Sbjct: 87 AIDALKKGLDDLMDLCDVVTESFNEQL-----SESTSSMQVD 123
>gi|344304121|gb|EGW34370.1| hypothetical protein SPAPADRAFT_59793 [Spathaspora passalidarum
NRRL Y-27907]
Length = 127
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
GA D + A+F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+
Sbjct: 31 GASEDGTAASFQIVDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNIS 90
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVD 90
A E L L +C + F++ ++
Sbjct: 91 AVEALHQGLDNLSELCTVIEEKFSEKIE 118
>gi|291410364|ref|XP_002721466.1| PREDICTED: polymerase (RNA) I polypeptide D [Oryctolagus cuniculus]
Length = 133
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ ++
Sbjct: 89 ALPAVEPFQRGLNELMNVCQHVLDKFEASIKHYK 122
>gi|302764430|ref|XP_002965636.1| hypothetical protein SELMODRAFT_28501 [Selaginella
moellendorffii]
gi|300166450|gb|EFJ33056.1| hypothetical protein SELMODRAFT_28501 [Selaginella
moellendorffii]
Length = 51
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
+TF + +EDHT N++R+ LN DPRVTFCGYS+PHPSD RVN+RVQTTG
Sbjct: 2 STFCINDEDHTFGNSIRYVLNGDPRVTFCGYSVPHPSDNRVNVRVQTTG 50
>gi|432117377|gb|ELK37721.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Myotis
davidii]
Length = 123
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 19 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 78
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + EL+ +C+HV F ++ +++
Sbjct: 79 ALPAVEPFQRGLNELLNVCQHVLDKFEASIKEYK 112
>gi|348536761|ref|XP_003455864.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Oreochromis niloticus]
Length = 114
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D+ TF L +EDHTL N++R+ + ++ V FCGY+I HPS++++N R+QT G PA E
Sbjct: 20 DEGCVTFVLHDEDHTLGNSLRYMIMKNADVEFCGYTITHPSESKINFRIQTRGGIPAAEP 79
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFR 93
L+ EL +C+HV +TF V++F+
Sbjct: 80 LRRGLNELSDVCQHVLNTFQARVNEFK 106
>gi|238879719|gb|EEQ43357.1| DNA-directed RNA polymerases I and III 14 kDa polypeptide [Candida
albicans WO-1]
Length = 133
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
G+ D ++A+F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+
Sbjct: 37 GSSEDGTSASFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNIS 96
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV 89
A E L L +C + F A+
Sbjct: 97 AVEALHQGLDNLSELCGAIEDKFDDAI 123
>gi|68490974|ref|XP_710709.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
gi|68491001|ref|XP_710695.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
gi|46431930|gb|EAK91447.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
gi|46431945|gb|EAK91461.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
Length = 131
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
G+ D ++A+F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+
Sbjct: 35 GSSEDGTSASFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNIS 94
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV 89
A E L L +C + F A+
Sbjct: 95 AVEALHQGLDNLSELCGAIEDKFDDAI 121
>gi|335296765|ref|XP_003357859.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Sus scrofa]
Length = 133
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ ++
Sbjct: 89 ALPAVEPFQRGLTELMNVCQHVLDKFEASIKAYK 122
>gi|296479321|tpg|DAA21436.1| TPA: polymerase (RNA) I polypeptide D-like [Bos taurus]
Length = 133
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + +LM +C+HV F ++ +++
Sbjct: 89 ALPAVEPFQRGVTDLMNVCQHVLDKFEASIKEYK 122
>gi|294654812|ref|XP_456893.2| DEHA2A12980p [Debaryomyces hansenii CBS767]
gi|199429167|emb|CAG84870.2| DEHA2A12980p [Debaryomyces hansenii CBS767]
Length = 129
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
G+ D + A+F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+
Sbjct: 33 GSSEDGTAASFQIVDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNIS 92
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVD--DFRTSE 96
A E L L +C + F++ ++ ++T E
Sbjct: 93 AVEALHQGLDNLSELCSTIEEKFSEKIEAGGYKTVE 128
>gi|115497472|ref|NP_001069612.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Bos taurus]
gi|122143797|sp|Q1RMG8.1|RPAC2_BOVIN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=DNA-directed RNA polymerase I subunit D
gi|92096988|gb|AAI14906.1| Polymerase (RNA) I polypeptide D, 16kDa [Bos taurus]
gi|296481744|tpg|DAA23859.1| TPA: DNA-directed RNA polymerases I and III subunit RPAC2 [Bos
taurus]
gi|440900647|gb|ELR51729.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Bos grunniens
mutus]
Length = 133
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + +LM +C+HV F ++ +++
Sbjct: 89 ALPAVEPFQRGLTDLMNVCQHVLDKFEASIKEYK 122
>gi|301783617|ref|XP_002927225.1| PREDICTED: hypothetical protein LOC100471798 [Ailuropoda
melanoleuca]
Length = 324
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 220 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 279
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ +++
Sbjct: 280 ALPAVEPFQRGLNELMNVCQHVLDKFEASIKEYK 313
>gi|443685824|gb|ELT89297.1| hypothetical protein CAPTEDRAFT_127647, partial [Capitella
teleta]
Length = 93
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D++ ATF L EDHTL N++R + ++P V FCGYS+PHPS+ ++N+R+QT G A VL
Sbjct: 11 DETCATFVLHGEDHTLGNSLRHMIMKNPDVEFCGYSVPHPSETKINLRIQTKGPSAMSVL 70
Query: 68 KDSCQELMLMCRHVRSTF 85
+ +L + +HV TF
Sbjct: 71 EKGLNDLKKVSKHVLDTF 88
>gi|126134273|ref|XP_001383661.1| RNA polymerase I and III subunit [Scheffersomyces stipitis CBS
6054]
gi|126095810|gb|ABN65632.1| RNA polymerase I and III subunit [Scheffersomyces stipitis CBS
6054]
Length = 119
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
GA D + A+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+
Sbjct: 23 GASEDGTAASFQILEEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNIT 82
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV 89
A E L L +C + F + +
Sbjct: 83 AVEALHQGLDNLAELCTVIGDKFEEKI 109
>gi|448111317|ref|XP_004201814.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
gi|359464803|emb|CCE88508.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
Length = 133
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
G+ D + ++F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+
Sbjct: 37 GSSEDGTASSFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNIT 96
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVD 90
A E L L+ +C + F++ ++
Sbjct: 97 AVEALHQGLDNLVELCGVIEDKFSEKIE 124
>gi|398393690|ref|XP_003850304.1| hypothetical protein MYCGRDRAFT_45952, partial [Zymoseptoria
tritici IPO323]
gi|339470182|gb|EGP85280.1| hypothetical protein MYCGRDRAFT_45952 [Zymoseptoria tritici
IPO323]
Length = 101
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 7 GDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPARE 65
G + A+F+ +EDHTL NA+R+ + ++P V FCGYSIPHPS+A +N+R+QT G E
Sbjct: 4 GTDTAASFAFEKEDHTLGNALRYMIMKNPDVEFCGYSIPHPSEAVMNLRIQTWDGVNVME 63
Query: 66 VLKDSCQELMLMCRHVRSTFAKAVDDF 92
VL+ +L MC V F A D+F
Sbjct: 64 VLRKGLDDLSDMCDAVEEKFTTARDEF 90
>gi|328768812|gb|EGF78857.1| hypothetical protein BATDEDRAFT_12522 [Batrachochytrium
dendrobatidis JAM81]
Length = 99
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D +ATF ++ EDHTL NA+R+ + ++P V+FCGYS+PHPS+ ++N+R+QT G A +
Sbjct: 1 DLGSATFCISNEDHTLGNALRYIIMKNPAVSFCGYSVPHPSEYQINLRIQTDGSITAVDA 60
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L +L+ M HV+ +F V
Sbjct: 61 LHKGLDDLVDMTTHVKESFKDKV 83
>gi|212546343|ref|XP_002153325.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
gi|210064845|gb|EEA18940.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
Length = 135
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
A+F EE HTL NA+R+ + ++P+V FCGY+IPHPS+A++N+R+QT D A E L+
Sbjct: 44 ASFQFKEEGHTLGNALRYVIMKNPKVEFCGYTIPHPSEAKMNLRIQTYDDTTAIEALEKG 103
Query: 71 CQELMLMCRHVRSTFAKAVDDF 92
+LM +C V F A D F
Sbjct: 104 LNDLMDLCDVVSDKFTVARDAF 125
>gi|242025436|ref|XP_002433130.1| DNA-directed RNA polymerase I 16 kD polypeptide, putative
[Pediculus humanus corporis]
gi|212518671|gb|EEB20392.1| DNA-directed RNA polymerase I 16 kD polypeptide, putative
[Pediculus humanus corporis]
Length = 103
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 58/86 (67%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D+S+ TF E HTL NA+R +++ VTFCGY+IPHPS+ ++N R+QT+G A ++L
Sbjct: 13 DESSRTFVFDGEGHTLGNALRSVISRYSEVTFCGYTIPHPSEEKINFRIQTSGARAVDIL 72
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFR 93
K +L C ++ + F++ V++++
Sbjct: 73 KKGLTDLEEHCEYIMNVFSQEVENYK 98
>gi|432880437|ref|XP_004073697.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Oryzias latipes]
Length = 142
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSC 71
TF + +EDHTL N++R+ + ++P V FCGY+I HPS++++N R+QT G PA E L+
Sbjct: 25 TFVMHDEDHTLGNSLRYMIMKNPDVDFCGYTITHPSESKINFRIQTRGGVPAVEPLQKGL 84
Query: 72 QELMLMCRHVRSTFAKAVDDFRT 94
+L +C+HV +TF D++
Sbjct: 85 SDLHQVCQHVLNTFQAKFKDYKV 107
>gi|448097294|ref|XP_004198635.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
gi|359380057|emb|CCE82298.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
Length = 133
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
G+ D + ++F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++N+R+QT G+
Sbjct: 37 GSSEDGTASSFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNVRIQTYGNIT 96
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVD 90
A E L L+ +C + F++ ++
Sbjct: 97 AVEALHQGLDNLVELCGVIEDNFSEKIE 124
>gi|325186683|emb|CCA21232.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 897
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAR-EVL 67
Q++ T+ +EDHTL NA+R+ L ++P+V FCGY+IPHPS+ ++++R+QT D A EVL
Sbjct: 31 QASKTYVFHDEDHTLGNALRYILMRNPKVEFCGYTIPHPSEPKMHLRLQTQKDVASDEVL 90
Query: 68 KDSCQELMLMCRHVRSTFAKAV 89
++ Q+L + H+ + KA+
Sbjct: 91 REGLQDLYKLSSHLNEVYWKAL 112
>gi|340503209|gb|EGR29821.1| hypothetical protein IMG5_148050 [Ichthyophthirius multifiliis]
Length = 143
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 59/90 (65%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D+++AT+ +EDHTL NA+R+ L + V FCGY+IPHPS+ R+N+R+QT+ + EVL
Sbjct: 52 DKTSATYIFYDEDHTLGNALRYVLVKRKDVEFCGYTIPHPSENRLNLRLQTSSKNSNEVL 111
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSEK 97
K+S L +C + F A+ + +++
Sbjct: 112 KESLDSLAGLCDVLNDKFVDALKKHKKNQR 141
>gi|302308422|ref|NP_985330.2| AFL220Cp [Ashbya gossypii ATCC 10895]
gi|299790625|gb|AAS53154.2| AFL220Cp [Ashbya gossypii ATCC 10895]
gi|374108558|gb|AEY97464.1| FAFL220Cp [Ashbya gossypii FDAG1]
Length = 135
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D + A+F +T+EDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIR+QT G A +
Sbjct: 50 DGTCASFQITDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENFLNIRIQTYGKVTAVDA 109
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L Q+LM MC V F + +
Sbjct: 110 LHKGLQDLMDMCDVVEDKFTQRI 132
>gi|145541556|ref|XP_001456466.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424278|emb|CAK89069.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
ME D N TF +EDHTL N++R+ L P V FCGYS+PHPS+ ++N+R+QT
Sbjct: 31 MEIQEHSDPFNGTFVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENKMNMRLQTVN 90
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVDD 91
+ +++ D + L +C + F KA+++
Sbjct: 91 ETKEKIMNDGLKCLSQICDIIEDKFKKALEN 121
>gi|427794155|gb|JAA62529.1| Putative rna polymerase i/iii 16kd polypeptide, partial
[Rhipicephalus pulchellus]
Length = 131
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQ 72
TF + ++DHTL NA+R+ + ++P V FCGY+IPHPS+ +V++R++T G A E LK Q
Sbjct: 43 TFVMDDQDHTLGNALRYMIMKNPEVRFCGYAIPHPSERKVHLRIETRGITAVEALKKGLQ 102
Query: 73 ELMLMCRHVRSTFAKAVDDFRTSE 96
+L M H+ F + V+ +T +
Sbjct: 103 DLHKMSEHMLKEFEETVEKHKTKD 126
>gi|307175199|gb|EFN65277.1| Probable DNA-directed RNA polymerases I and III subunit RPAC2
[Camponotus floridanus]
Length = 97
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
TF +E HTL NA+ + +NQ P + C Y++PHP++ +++ +QTTG+ A EVLK
Sbjct: 7 GTFVFVDEGHTLGNALSYVINQYPGIKICAYTVPHPAENKIHFNIQTTGESAIEVLKRGL 66
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSE 96
Q+L +C H TF A +F++++
Sbjct: 67 QDLERICDHTIETFDTAYKNFKSND 91
>gi|307166226|gb|EFN60456.1| Probable DNA-directed RNA polymerases I and III subunit RPAC2
[Camponotus floridanus]
Length = 107
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
TF +E HTL NA+ + +NQ P + C Y++PHP++ +++ +QTTG+ A EVLK
Sbjct: 17 GTFVFVDEGHTLGNALSYVINQYPGIKICAYTVPHPAENKIHFNIQTTGESAIEVLKRGL 76
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSE 96
Q+L +C H TF A +F++++
Sbjct: 77 QDLERICDHTIETFDTAYKNFKSND 101
>gi|156835838|ref|XP_001642180.1| hypothetical protein Kpol_165p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112621|gb|EDO14322.1| hypothetical protein Kpol_165p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 128
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D + A+F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ +N+R+QT G A E
Sbjct: 43 DGTCASFQIMDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENLLNLRIQTYGSTTAVEA 102
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDF 92
L+ +LM MC V F + + +
Sbjct: 103 LQKGLGDLMDMCDVVEEKFTQRIKEL 128
>gi|452982354|gb|EME82113.1| hypothetical protein MYCFIDRAFT_77593 [Pseudocercospora fijiensis
CIRAD86]
Length = 133
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDS 70
A+F+ +EDHTL NA+R+ + ++P V FCGYSIPHPS+A +N+R+QT G +VL+
Sbjct: 41 ASFAFEKEDHTLGNALRYMIMKNPDVEFCGYSIPHPSEAVMNLRIQTWDGVSVFDVLRKG 100
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTS 95
++L +C V F +A D+F +
Sbjct: 101 LEDLADLCDAVEEKFTEARDEFNAA 125
>gi|428179316|gb|EKX48188.1| DNA-directed RNA polymerase subunit [Guillardia theta CCMP2712]
Length = 148
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQE 73
F + EDHTL NA+R ++++P VTFCGYS+PHP ++++++ +QT G+ E L +E
Sbjct: 64 FVMRNEDHTLGNALRIVISRNPNVTFCGYSVPHPLESKMHLHIQTKGEEEDETLLPGLKE 123
Query: 74 LMLMCRHVRSTFAKAVDDFRTS 95
+M MC H+ F +A ++ S
Sbjct: 124 IMSMCDHLGDVFDEAESEYYIS 145
>gi|320166880|gb|EFW43779.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 166
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 59/82 (71%), Gaps = 6/82 (7%)
Query: 6 FGDQS---NATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT---T 59
GD+ NAT ++ +EDHT+ NA+R+ L ++P V FCGYSIPHPS+ ++++RVQT +
Sbjct: 62 VGDEQSIENATVAIKDEDHTIGNALRYMLMKNPDVEFCGYSIPHPSENKIHVRVQTVPGS 121
Query: 60 GDPAREVLKDSCQELMLMCRHV 81
G A +V++ + ++L+ MC HV
Sbjct: 122 GVSAVDVVRKALEQLIEMCSHV 143
>gi|125576614|gb|EAZ17836.1| hypothetical protein OsJ_33384 [Oryza sativa Japonica Group]
Length = 156
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Query: 1 MEHGAFG---DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
+ HGAF Q+ + T+ H+ + L + P SIPHP+D +VNIRVQ
Sbjct: 22 LAHGAFLHPLGQAGSYVQATKRPHSASTHSSQGLCRQPNTP----SIPHPADNKVNIRVQ 77
Query: 58 TTGDPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRT 94
TTGDPA +V KD Q+L++MC+HVR TF AV DFR+
Sbjct: 78 TTGDPAIDVFKDGLQDLIVMCQHVRGTFDNAVVDFRS 114
>gi|190347624|gb|EDK39934.2| hypothetical protein PGUG_04032 [Meyerozyma guilliermondii ATCC
6260]
Length = 123
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA 63
G+ D + ATF + +EDHTL N +R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+ +
Sbjct: 27 GSSEDGTAATFQIIDEDHTLGNTLRYVIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNIS 86
Query: 64 R-EVLKDSCQELMLMCRHVRSTFAKAV 89
E L L +C + + F++ +
Sbjct: 87 SVEALHQGLDNLSELCTVIETKFSEKI 113
>gi|146414666|ref|XP_001483303.1| hypothetical protein PGUG_04032 [Meyerozyma guilliermondii ATCC
6260]
Length = 123
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA 63
G+ D + ATF + +EDHTL N +R+ + ++P V FCGYSIPHPS+ ++NIR+QT G+ +
Sbjct: 27 GSSEDGTAATFQIIDEDHTLGNTLRYVIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNIS 86
Query: 64 R-EVLKDSCQELMLMCRHVRSTFAKAV 89
E L L +C + + F++ +
Sbjct: 87 SVEALHQGLDNLSELCTVIETKFSEKI 113
>gi|430811896|emb|CCJ30651.1| unnamed protein product [Pneumocystis jirovecii]
Length = 124
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 7 GDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PARE 65
D ++ TF + +EDHTLANA+R+ + ++P V FCGYSIPHPS+ +N R+QT + A +
Sbjct: 26 NDLTSVTFQIIKEDHTLANALRYIVMKNPDVEFCGYSIPHPSEPTLNFRIQTFRNISAVD 85
Query: 66 VLKDSCQELMLMCRHVRSTFAKAVD 90
V +L+ +C HV TF K ++
Sbjct: 86 VFIKGLDDLVALCDHVADTFQKKLN 110
>gi|363753556|ref|XP_003646994.1| hypothetical protein Ecym_5423 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890630|gb|AET40177.1| hypothetical protein Ecym_5423 [Eremothecium cymbalariae
DBVPG#7215]
Length = 127
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
A D + A+F +++EDHTL NA+R+ + ++P V FCGYSIPHPS+ +N+R+QT G
Sbjct: 38 AASEDGTCASFQISDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSETVLNLRIQTYGKMT 97
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV 89
A E L ++LM +C V F + +
Sbjct: 98 AVEALHKGLKDLMDLCDVVEDKFTQRI 124
>gi|429329665|gb|AFZ81424.1| RNA polymerase small subunit, putative [Babesia equi]
Length = 92
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 11 NATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDS 70
N TFS+ EDHTL N +R L + V F GYS+PHP +NIR+QTTG PA EV S
Sbjct: 7 NITFSIENEDHTLGNVLRTLLVERDDVVFAGYSVPHPMQPEMNIRIQTTGQPAVEVFSQS 66
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+L+ +C + F KA+D+
Sbjct: 67 LGDLVEICDTLTDAFKKAMDE 87
>gi|307195509|gb|EFN77395.1| Probable DNA-directed RNA polymerases I and III subunit RPAC2
[Harpegnathos saltator]
Length = 101
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQ 72
TF +E HTL NA+++ ++Q P V CGY++ HP+++++ +R+QT A E+LK +
Sbjct: 12 TFVFMDEGHTLGNALKYVISQYPEVIMCGYTLQHPAESKMLLRIQTKNGNAYELLKRGLE 71
Query: 73 ELMLMCRHVRSTFAKAVDDFRTSE 96
+L MC H TF KA +++++S+
Sbjct: 72 DLAKMCDHTIETFDKAYEEYQSSQ 95
>gi|145535985|ref|XP_001453720.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421453|emb|CAK86323.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
ME D N TF +EDHTL N++R+ L P V FCGYS+PHPS+ ++N+R+QT
Sbjct: 31 MEIQENSDPFNGTFVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENKMNMRLQTVN 90
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVD 90
+ +V+ D + L +C + F +A++
Sbjct: 91 ETKEKVMNDGLKCLSQICDIIEDKFKQALE 120
>gi|66802584|ref|XP_635164.1| hypothetical protein DDB_G0291362 [Dictyostelium discoideum AX4]
gi|74851461|sp|Q54ES6.1|RPC19_DICDI RecName: Full=DNA-directed RNA polymerases I and III subunit rpc19
gi|60463480|gb|EAL61665.1| hypothetical protein DDB_G0291362 [Dictyostelium discoideum AX4]
Length = 116
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
ATF T+EDHTL NA+ + L ++P+V F GYSIPHPSD R+N+R+QT + A+E L
Sbjct: 36 ATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQESLLQG 95
Query: 71 CQELMLMCRHVRSTFAKAVD 90
++ + RH+ TF A+D
Sbjct: 96 LTDIKDISRHIFETFNNALD 115
>gi|303322216|ref|XP_003071101.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240110800|gb|EER28956.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 145
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
++ A+F EDHTL NA+R+ + ++P V FCGY++PHPS+ ++N+R+QT EVL
Sbjct: 55 ETAASFQFEGEDHTLGNALRYIIMKNPDVEFCGYTMPHPSETKMNLRIQTYASTNVFEVL 114
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTS 95
+L+ +C V TF A DDF T+
Sbjct: 115 DKGLSDLIDLCDVVTETFTTARDDFETN 142
>gi|440795586|gb|ELR16706.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 129
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 7 GDQSN-ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAR 64
GD N T +L+ EDHTL N++R+ L ++P V FCGYS+PHPS+ ++N+R+QT G P+
Sbjct: 24 GDSDNLITVTLSNEDHTLGNSLRWILMKNPEVDFCGYSVPHPSEPKMNVRIQTKDGKPSV 83
Query: 65 EVLKDSCQELMLMCRHVRSTF 85
E L+ +L+ + + TF
Sbjct: 84 EALRKGLNDLVSIAEYTLGTF 104
>gi|320034951|gb|EFW16893.1| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
posadasii str. Silveira]
gi|392861857|gb|EAS37553.2| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
immitis RS]
Length = 145
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
++ A+F EDHTL NA+R+ + ++P V FCGY++PHPS+ ++N+R+QT EVL
Sbjct: 55 ETAASFQFEGEDHTLGNALRYIIMKNPDVEFCGYTMPHPSETKMNLRIQTYASTNVFEVL 114
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTS 95
+L+ +C V TF A DDF T+
Sbjct: 115 DKGLSDLIDLCDVVTETFTTARDDFETN 142
>gi|328865481|gb|EGG13867.1| putative RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 103
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
ATF +TEEDHT+ N++ + L ++P+V F GYSIPHPSD ++N+R+QT G+ A++ +
Sbjct: 24 ATFIMTEEDHTIGNSLHYVLMKNPKVDFSGYSIPHPSDNKLNLRIQTKGETSAQDAILTG 83
Query: 71 CQELMLMCRHVRSTFAKAVD 90
++ + +H+ TF AV+
Sbjct: 84 LNDIKDIGKHILETFNDAVN 103
>gi|406864812|gb|EKD17855.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 142
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDS 70
A+F +EDHTL N++R+ + ++P V FCGYSIPHPS+ +NIR+QT G A L
Sbjct: 56 ASFEFKKEDHTLGNSLRYIIMKNPNVEFCGYSIPHPSEELMNIRIQTYEGTTAVAALDKG 115
Query: 71 CQELMLMCRHVRSTFAKAVDDF 92
Q+LM +C V F +A +DF
Sbjct: 116 FQDLMDLCDEVALKFMQAREDF 137
>gi|326924460|ref|XP_003208445.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Meleagris gallopavo]
Length = 134
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D + TF L +EDHTL N++R+ + ++P V FCGY I HPS++++N R+QT G PA E
Sbjct: 18 DGNCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKINFRIQTRGSLPAVEP 77
Query: 67 LKDSCQELMLMCRHVRSTF 85
+ +LM +C+HV TF
Sbjct: 78 FRKGLNDLMGVCQHVLDTF 96
>gi|50312213|ref|XP_456138.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645274|emb|CAG98846.1| KLLA0F23760p [Kluyveromyces lactis]
Length = 127
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D ++A+F +T+EDHTL N +R+ + ++P V FCGYSIPHPS+ ++IR+QT G A E
Sbjct: 42 DGTSASFRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEA 101
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L +LM MC V F + +
Sbjct: 102 LHKGLGDLMDMCDAVEDRFTQRI 124
>gi|149246468|ref|XP_001527691.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
gi|146447645|gb|EDK42033.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
Length = 135
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
G+ D ++A+F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++N+R+QT G+
Sbjct: 39 GSLEDGTSASFQILDEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKLNVRIQTYGNIS 98
Query: 63 AREVLKDSCQELMLMC 78
A E L L +C
Sbjct: 99 AVEALHQGLDNLSELC 114
>gi|449281716|gb|EMC88730.1| DNA-directed RNA polymerases I and III subunit RPAC2, partial
[Columba livia]
Length = 90
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D + TF L +EDHTL N++R+ + ++P V FCGY I HPS++++N R+QT G PA E
Sbjct: 8 DGNCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKINFRIQTRGTLPAVEP 67
Query: 67 LKDSCQELMLMCRHVRSTF 85
+ +LM +C+HV +TF
Sbjct: 68 FRKGLNDLMGVCQHVLNTF 86
>gi|241121691|ref|XP_002403305.1| RNA polymerase I/III 16Kd polypeptide, putative [Ixodes scapularis]
gi|215493414|gb|EEC03055.1| RNA polymerase I/III 16Kd polypeptide, putative [Ixodes scapularis]
Length = 109
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 58/91 (63%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQ 72
T+ L ++DHTL N++R+ + ++P+V FCGY+IPHPS+ +V++R++T A E LK Q
Sbjct: 19 TYLLDDQDHTLGNSLRYMIMKNPQVKFCGYAIPHPSERKVHLRIETRDITADEALKKGLQ 78
Query: 73 ELMLMCRHVRSTFAKAVDDFRTSEKVQAMKI 103
+L M H+ F K V + + + M++
Sbjct: 79 DLHQMSEHILKVFEKTVAKHKATVSEEKMEM 109
>gi|442747853|gb|JAA66086.1| Putative rna polymerase i/iii 16kd polypeptide [Ixodes ricinus]
Length = 110
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQ 72
T+ L ++DHTL N++R+ + ++P+V FCGY+IPHPS+ +V++R++T A E LK Q
Sbjct: 20 TYLLDDQDHTLGNSLRYMIMKNPQVKFCGYAIPHPSERKVHLRIETRDITADEALKKGLQ 79
Query: 73 ELMLMCRHVRSTFAKAV 89
+L M H+ F K V
Sbjct: 80 DLHQMSEHILKVFEKTV 96
>gi|169612495|ref|XP_001799665.1| hypothetical protein SNOG_09370 [Phaeosphaeria nodorum SN15]
gi|160702522|gb|EAT83562.2| hypothetical protein SNOG_09370 [Phaeosphaeria nodorum SN15]
Length = 139
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 9/93 (9%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQD--------PRVTFCGYSIPHPSDARVNIRVQTT- 59
++ A+F + EDHTL NA+R+ ++++ P V FCGYSIPHPS+A++N+R+QT
Sbjct: 41 ETAASFQIDGEDHTLGNALRYIIHKNEVANTIYSPDVEFCGYSIPHPSEAKMNLRIQTYD 100
Query: 60 GDPAREVLKDSCQELMLMCRHVRSTFAKAVDDF 92
G VL+ ++LM MC V F + DDF
Sbjct: 101 GVSVYSVLEKGLEDLMAMCDVVEEKFKVSRDDF 133
>gi|407922733|gb|EKG15828.1| DNA-directed RNA polymerase Rpb11 13-16kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 126
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
A+F EDHTL NA+R+ + ++P V FCGYSIPHPS+A++N+R+QT D +VL+
Sbjct: 42 ASFEFENEDHTLGNALRYIIMKNPSVEFCGYSIPHPSEAKMNLRIQTYDDVSVYDVLEKG 101
Query: 71 CQELMLMCRHVRSTFAKAVDDF 92
+L +C V F A D+F
Sbjct: 102 LDDLAELCDVVIDKFTIARDEF 123
>gi|68071445|ref|XP_677636.1| RNA polymerase small subunit [Plasmodium berghei strain ANKA]
gi|56497829|emb|CAH98380.1| RNA polymerase small subunit, putative [Plasmodium berghei]
Length = 96
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKD 69
++ATF EDHTL N +R L Q + F GY++PHP+ A +N+R+QTTG PA +LKD
Sbjct: 14 THATFCFENEDHTLGNCLRCILLQKEGIEFAGYTVPHPTQAEINLRIQTTGKPAINILKD 73
Query: 70 SCQELMLMCRHVRSTFAKAVD 90
S +L +C + F A++
Sbjct: 74 SLDDLSNICTILLEKFKNALE 94
>gi|50293019|ref|XP_448942.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528255|emb|CAG61912.1| unnamed protein product [Candida glabrata]
Length = 137
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D + A+F + +EDHTL NA+R+ + ++P V FCGYSIPHPS+ +N+R+QT G+ A +
Sbjct: 53 DGTCASFQIAQEDHTLGNALRYIIMKNPEVEFCGYSIPHPSEELLNLRIQTYGNITAVDA 112
Query: 67 LKDSCQELMLMCRHVRSTFAK 87
L+ +L+ +C V+ F +
Sbjct: 113 LQKGLDDLIDLCDAVKDKFVQ 133
>gi|389585811|dbj|GAB68541.1| RNA polymerase small subunit [Plasmodium cynomolgi strain B]
Length = 97
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKD 69
++ATF EDHTL N +R L Q V F GY++PHP+ A +N+R+QTTG+PA +LKD
Sbjct: 14 THATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTTGEPAINILKD 73
Query: 70 SCQELMLMCRHVRSTFAKAV 89
S ++L +C + + F V
Sbjct: 74 SLEDLSNICDIMLNKFDSVV 93
>gi|70949116|ref|XP_743999.1| RNA polymerase small subunit [Plasmodium chabaudi chabaudi]
gi|56523760|emb|CAH77311.1| RNA polymerase small subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 96
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKD 69
++ATF EDHTL N +R L Q + F GY++PHP+ A +N+R+QTTG+PA +LKD
Sbjct: 14 THATFCFENEDHTLGNCLRCILLQKEGIEFAGYTVPHPTQAEINLRIQTTGEPAINILKD 73
Query: 70 SCQELMLMCRHVRSTFAKAVDD 91
S +L +C + F A+++
Sbjct: 74 SLDDLSNICTIMLDKFNDALEN 95
>gi|453083599|gb|EMF11644.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Mycosphaerella populorum SO2202]
Length = 134
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAR-EVLKDS 70
A+F+ +EDHTL N +R+ ++++P V F GYSIPHPS+A +N+R+QT + + EVL+
Sbjct: 41 ASFAFEKEDHTLGNVLRYLISKNPDVEFVGYSIPHPSEAFMNLRIQTWDNVSVFEVLRKG 100
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTS 95
Q+L MC + F + D+F+ S
Sbjct: 101 LQDLEDMCDVIEEKFVASRDEFKIS 125
>gi|336257723|ref|XP_003343685.1| hypothetical protein SMAC_08854 [Sordaria macrospora k-hell]
gi|380091918|emb|CCC10647.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 157
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDS 70
A+F EE+HTL NA+R+ + ++P V FC Y+IPHPS+A++N+R+QT G A E L+
Sbjct: 67 ASFEFLEENHTLGNALRYVIMKNPDVEFCAYAIPHPSEAKMNVRIQTYEGTTAVEALRKG 126
Query: 71 CQELMLMCRHVRSTFAKAVDDF 92
+++ +C V F +A +DF
Sbjct: 127 LRDIQELCDVVSDKFLEARNDF 148
>gi|242823716|ref|XP_002488115.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces stipitatus ATCC 10500]
gi|218713036|gb|EED12461.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces stipitatus ATCC 10500]
Length = 136
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVL 67
++ A+F EE HTL NA+R+ + ++P V FCGY+IPHPS+A++N+R+QT + A E L
Sbjct: 42 ETAASFQFKEEGHTLGNALRYVIMKNPAVEFCGYTIPHPSEAKMNLRIQTYENTTAIEAL 101
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDF 92
+ +LM +C V F A D F
Sbjct: 102 EKGLDDLMDLCDVVTDKFTVARDSF 126
>gi|221060390|ref|XP_002260840.1| RNA polymerase small subunit [Plasmodium knowlesi strain H]
gi|193810914|emb|CAQ42812.1| RNA polymerase small subunit, putative [Plasmodium knowlesi
strain H]
Length = 94
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKD 69
++ATF EDHTL N +R L Q V F GY++PHP+ A +N+R+QTTG+PA +LKD
Sbjct: 14 THATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTTGEPAVNILKD 73
Query: 70 SCQELMLMCRHVRSTFAKAV 89
+ +L +C + + F AV
Sbjct: 74 ALDDLSNICDIMLNKFDSAV 93
>gi|344232063|gb|EGV63942.1| RNA polymerase I and III subunit [Candida tenuis ATCC 10573]
Length = 123
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
G+ D + A+F + +EDHTL N++R+ + ++P V F GYSIPHPS+ ++NIR+QT G
Sbjct: 36 GSSEDGTAASFQIVDEDHTLGNSLRYVIMKNPEVEFVGYSIPHPSENKLNIRIQTYGSIT 95
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVD 90
A E L + L +C + + F +A++
Sbjct: 96 AVEALHLGLENLSQLCGVIETKFMEALN 123
>gi|403217497|emb|CCK71991.1| hypothetical protein KNAG_0I02060 [Kazachstania naganishii CBS
8797]
Length = 134
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D + A+F + EDHTL NA+R+ + ++P V FCGYSIPHPS+ +N+R+QT G A +
Sbjct: 49 DGTCASFQILNEDHTLGNALRYVIMKNPEVEFCGYSIPHPSENWLNVRIQTYGKITAVDA 108
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
K +LM MC V F + +
Sbjct: 109 FKKGLGDLMDMCDVVEDVFTQRI 131
>gi|121703648|ref|XP_001270088.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus clavatus NRRL 1]
gi|119398232|gb|EAW08662.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus clavatus NRRL 1]
Length = 142
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
++ A+F E HTL NA+R+T+ ++P V FCGY+IPHPS+A++N+R+QT A E L
Sbjct: 48 ETAASFQFEGEGHTLGNALRYTIMKNPEVEFCGYTIPHPSEAKMNLRIQTYDTTNAVEAL 107
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
+ + LM +C V F A D + S+
Sbjct: 108 EKGLEALMDLCDVVTDKFTSARDAYNASQ 136
>gi|452841596|gb|EME43533.1| hypothetical protein DOTSEDRAFT_63729 [Dothistroma septosporum
NZE10]
Length = 133
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDS 70
A+FS EDHTL NA+R+ L +DP V FCGYSIPHPS+ +NIR+QT G VL+ +
Sbjct: 41 ASFSFENEDHTLGNALRYMLTKDPDVEFCGYSIPHPSEPFMNIRIQTWDGVHVNVVLRRA 100
Query: 71 CQELMLMCRHVRSTFAKAVDDF 92
+ L +C V F + D F
Sbjct: 101 LENLADLCDAVEEKFVASRDQF 122
>gi|261190999|ref|XP_002621908.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239590952|gb|EEQ73533.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239613144|gb|EEQ90131.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
gi|327354788|gb|EGE83645.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 142
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
++ A+F +EDHTL NA+R+ + ++P V FCGY++PHPS+A++N+R+QT EVL
Sbjct: 52 ETAASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTYDTTNVFEVL 111
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDF 92
+ +LM +C V TF +A + F
Sbjct: 112 EKGFDDLMDLCDTVTETFMEAKNAF 136
>gi|84996827|ref|XP_953135.1| RNA polymerases I and III subunit (RPC19 homologue) [Theileria
annulata strain Ankara]
gi|65304131|emb|CAI76510.1| RNA polymerases I and III subunit (RPC19 homologue), putative
[Theileria annulata]
Length = 90
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%)
Query: 11 NATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDS 70
N TF + EDHTL N +R L + V F GYS+PHP + +NIR+QTTG PA EV D
Sbjct: 10 NITFCIENEDHTLGNTLRALLVERDDVVFAGYSVPHPMEPEMNIRIQTTGQPAVEVFLDC 69
Query: 71 CQELMLMCRHVRSTFAKAV 89
+++ +C +R F KA+
Sbjct: 70 LDDMVKICDILREKFEKAI 88
>gi|332016284|gb|EGI57197.1| Putative DNA-directed RNA polymerases I and III subunit RPAC2
[Acromyrmex echinatior]
Length = 103
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLK 68
++ TF +E HTL NA+ +N+ P V CG+++PHP++ R+++ +QTTG+ +VLK
Sbjct: 9 ETYGTFVFDDEGHTLGNALASVINEYPGVKICGHTVPHPAENRMHLNIQTTGENVIQVLK 68
Query: 69 DSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDS 105
Q+L MC H TF KA EK +A+K DS
Sbjct: 69 RGLQDLERMCDHTIETFNKAY------EKHKAIKEDS 99
>gi|410913427|ref|XP_003970190.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Takifugu rubripes]
Length = 122
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D+ TF + +EDHTL N++R+ + ++ V FCGY+I HPS+ ++N R+QT G PA EV
Sbjct: 20 DEGCVTFVMHDEDHTLGNSLRYMVMKNEDVEFCGYTITHPSENKINFRIQTRGGVPAAEV 79
Query: 67 LKDSCQELMLMCRHVRSTF 85
L+ +L +C+HV +TF
Sbjct: 80 LRKGLSDLHEVCQHVLNTF 98
>gi|156102216|ref|XP_001616801.1| RNA polymerase small subunit [Plasmodium vivax Sal-1]
gi|148805675|gb|EDL47074.1| RNA polymerase small subunit, putative [Plasmodium vivax]
Length = 97
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKD 69
++ATF EDHTL N +R L Q V F GY++PHP+ A +N+R+QTTG+PA +LKD
Sbjct: 14 THATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTTGEPAINILKD 73
Query: 70 SCQELMLMCRHVRSTFAKAV 89
S +L +C + + F V
Sbjct: 74 SLDDLSNICDIMLNKFDSVV 93
>gi|399217051|emb|CCF73738.1| unnamed protein product [Babesia microti strain RI]
Length = 88
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 11 NATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDS 70
N TF + EDHTL N VR L++ V+F GY++PHP +VNIRVQTTG PA + + +S
Sbjct: 7 NLTFCIENEDHTLGNVVRTILSKKKDVSFAGYTMPHPMQYQVNIRVQTTGKPAIQAMVES 66
Query: 71 CQELMLMCRHVRSTFAKAVD 90
E+ +C + F +A++
Sbjct: 67 LDEMQQVCDQILGEFNRALN 86
>gi|63054500|ref|NP_593118.2| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces pombe 972h-]
gi|2500635|sp|Q09177.1|RPAC2_SCHPO RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerases I
and III 14 kDa polypeptide
gi|5579416|gb|AAD45538.1|AF079779_1 nuclear RNA polymerases I and III common subunit Rpc19
[Schizosaccharomyces pombe]
gi|6692475|gb|AAF24657.1|AF116919_1 Rpc19 [Schizosaccharomyces pombe]
gi|1255203|gb|AAC49604.1| DNA-directed RNA polymerase I and III 16 kDa polypeptide
[Schizosaccharomyces pombe]
gi|3721850|dbj|BAA33719.1| RPA17 [Schizosaccharomyces pombe]
gi|4126811|dbj|BAA36760.1| RPA17 [Schizosaccharomyces pombe]
gi|159883909|emb|CAB50921.2| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces pombe]
Length = 125
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDP 62
G D ++ TF + +EDHTL N++R+ + ++P V FCGYSIPHPS+A++N R+QT
Sbjct: 27 GHSADLTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTT 86
Query: 63 AREVLKDSCQELMLMCRHVRSTFAK 87
A +VL+ +L+ +C V F +
Sbjct: 87 AVDVLRKGLDDLIDLCDAVTEKFTE 111
>gi|347829199|emb|CCD44896.1| hypothetical protein [Botryotinia fuckeliana]
Length = 148
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F +EDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIR+QT + A + L+
Sbjct: 62 ASFEFKKEDHTLGNALRYIIMKNPDVEFCGYSIPHPSEELMNIRIQTYDNSAEDALRKGL 121
Query: 72 QELMLMCRHVRSTFAKA 88
+L+ +C V F A
Sbjct: 122 DDLIDLCDVVADKFTAA 138
>gi|194879704|ref|XP_001974284.1| GG21646 [Drosophila erecta]
gi|190657471|gb|EDV54684.1| GG21646 [Drosophila erecta]
Length = 106
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF T E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ D
Sbjct: 9 GDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRDR 68
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDS 105
A ++LK ++L +C H TF K + DF A+K+D+
Sbjct: 69 AIDILKRGLEDLEGLCDHTIVTFEKEMADF------NAVKVDN 105
>gi|325095094|gb|EGC48404.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H88]
Length = 137
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 62/95 (65%), Gaps = 4/95 (4%)
Query: 7 GDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-ARE 65
+++ A+F +EDHTL NA+R+ + ++P V FCGY++PHPS+A++N+R+QT
Sbjct: 45 AEETAASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFS 104
Query: 66 VLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQA 100
VL+ +LM +C V TF +A + F E++Q+
Sbjct: 105 VLEKGLDDLMNLCDTVTETFIEAKNAF---EEIQS 136
>gi|225554760|gb|EEH03055.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Ajellomyces capsulatus G186AR]
Length = 137
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 62/95 (65%), Gaps = 4/95 (4%)
Query: 7 GDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-ARE 65
+++ A+F +EDHTL NA+R+ + ++P V FCGY++PHPS+A++N+R+QT
Sbjct: 45 AEETAASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFS 104
Query: 66 VLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQA 100
VL+ +LM +C V TF +A + F E++Q+
Sbjct: 105 VLEKGLDDLMNLCDTVTETFIEAKNAF---EEIQS 136
>gi|225581054|gb|ACN94631.1| GA10493 [Drosophila miranda]
Length = 110
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ D
Sbjct: 9 GDEKNGEGSRTFVFLNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDR 68
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRT 94
A ++LK ++L +C H TF + +D+F T
Sbjct: 69 AVDLLKRGLEDLEALCDHTIDTFGREMDNFNT 100
>gi|124808476|ref|XP_001348323.1| RNA polymerase small subunit, putative [Plasmodium falciparum
3D7]
gi|23497215|gb|AAN36762.1|AE014818_27 RNA polymerase small subunit, putative [Plasmodium falciparum
3D7]
Length = 96
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKD 69
++ATF EDHTL N +R L Q V F GY++PHP+ +N+R+QTTG PA ++LK+
Sbjct: 14 THATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQPEINVRIQTTGKPAIDILKE 73
Query: 70 SCQELMLMCRHVRSTFAKAV 89
S +L MC + + F +A+
Sbjct: 74 SLDDLGNMCDIMLNKFNEAL 93
>gi|154272529|ref|XP_001537117.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409104|gb|EDN04560.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 137
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 7 GDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-ARE 65
+++ A+F +EDHTL NA+R+ + ++P V FCGY++PHPS+A++N+R+QT
Sbjct: 45 AEETAASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFS 104
Query: 66 VLKDSCQELMLMCRHVRSTFAKAVDDF 92
VL+ +LM +C V TF +A + F
Sbjct: 105 VLEKGLDDLMNLCDTVTETFIEAKNAF 131
>gi|195164594|ref|XP_002023131.1| GL21124 [Drosophila persimilis]
gi|198461937|ref|XP_001352281.2| GA10493 [Drosophila pseudoobscura pseudoobscura]
gi|194105216|gb|EDW27259.1| GL21124 [Drosophila persimilis]
gi|198142415|gb|EAL29383.2| GA10493 [Drosophila pseudoobscura pseudoobscura]
Length = 110
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ D
Sbjct: 9 GDEKNGEGSRTFVFLNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDR 68
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDF 92
A ++LK ++L +C H TF K +D+F
Sbjct: 69 AVDLLKRGLEDLEALCDHTIDTFGKEMDNF 98
>gi|240276866|gb|EER40377.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H143]
Length = 137
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 62/95 (65%), Gaps = 4/95 (4%)
Query: 7 GDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-ARE 65
+++ A+F +EDHTL NA+R+ + ++P V FCGY++PHPS+A++N+R+QT
Sbjct: 45 AEETAASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFS 104
Query: 66 VLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQA 100
VL+ +LM +C V TF +A + F E++Q+
Sbjct: 105 VLEKGLDDLMNLCDTVTETFIEAKNVF---EEIQS 136
>gi|442628318|ref|NP_001260562.1| lethal (2) 37Cg, isoform C [Drosophila melanogaster]
gi|440213919|gb|AGB93097.1| lethal (2) 37Cg, isoform C [Drosophila melanogaster]
Length = 116
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF T E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ D
Sbjct: 20 GDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDR 79
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDS 105
A ++LK ++L +C H TF K + +F AMK+++
Sbjct: 80 AIDILKRGLEDLEGLCDHTIVTFEKEMAEF------NAMKVEN 116
>gi|67540776|ref|XP_664162.1| hypothetical protein AN6558.2 [Aspergillus nidulans FGSC A4]
gi|40738708|gb|EAA57898.1| hypothetical protein AN6558.2 [Aspergillus nidulans FGSC A4]
gi|259480131|tpe|CBF70983.1| TPA: DNA-directed RNA polymerase I and III 14 KDA polypeptide
(AFU_orthologue; AFUA_6G04610) [Aspergillus nidulans
FGSC A4]
Length = 137
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDS 70
A+F E HTL NA+RF + ++P V FCGY+IPHPS++++NIR+QT A E L+
Sbjct: 46 ASFQFEGEGHTLGNALRFAIMKNPEVEFCGYTIPHPSESKMNIRIQTYDSTTAVEALEKG 105
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSE 96
LM +C V F A D+F +
Sbjct: 106 LDTLMDLCDVVTDKFTAARDEFNAEQ 131
>gi|195484391|ref|XP_002090674.1| GE12666 [Drosophila yakuba]
gi|194176775|gb|EDW90386.1| GE12666 [Drosophila yakuba]
Length = 106
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF T E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ D
Sbjct: 9 GDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRDR 68
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDF 92
A ++LK ++L +C H TF K + DF
Sbjct: 69 AIDILKRGLEDLEGLCDHTIVTFEKEMADF 98
>gi|391334302|ref|XP_003741544.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Metaseiulus occidentalis]
Length = 104
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D++ TF L EDHTL NA+R + ++P V FCGY+IPHPS+ +++R+Q A + L
Sbjct: 12 DETCMTFLLENEDHTLGNALRCMIMKNPAVQFCGYAIPHPSERTIHVRIQMINGSAIDAL 71
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
+ Q+L M H+ +TF + ++ +Q
Sbjct: 72 EKGFQDLRDMMEHIHATFEDTISAYKEEVAMQ 103
>gi|330799276|ref|XP_003287672.1| hypothetical protein DICPUDRAFT_32831 [Dictyostelium purpureum]
gi|325082292|gb|EGC35778.1| hypothetical protein DICPUDRAFT_32831 [Dictyostelium purpureum]
Length = 116
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
ATF T+EDHTL N++ + L ++P+V F GYSIPHPSD R+N+R+QT G A+E L
Sbjct: 36 ATFIFTDEDHTLGNSLHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKGHISAQESLLQG 95
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
++ + H+ TF D+
Sbjct: 96 LNDIKDISAHILDTFNNTADN 116
>gi|442628320|ref|NP_001260563.1| lethal (2) 37Cg, isoform D [Drosophila melanogaster]
gi|440213920|gb|AGB93098.1| lethal (2) 37Cg, isoform D [Drosophila melanogaster]
Length = 132
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF T E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ D
Sbjct: 36 GDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDR 95
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDS 105
A ++LK ++L +C H TF K + +F AMK+++
Sbjct: 96 AIDILKRGLEDLEGLCDHTIVTFEKEMAEF------NAMKVEN 132
>gi|195345039|ref|XP_002039083.1| GM17025 [Drosophila sechellia]
gi|195580105|ref|XP_002079896.1| GD21773 [Drosophila simulans]
gi|194134213|gb|EDW55729.1| GM17025 [Drosophila sechellia]
gi|194191905|gb|EDX05481.1| GD21773 [Drosophila simulans]
Length = 106
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF T E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ D
Sbjct: 9 GDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDR 68
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDS 105
A ++LK ++L +C H TF K + +F AMK+++
Sbjct: 69 AIDILKRGLEDLEGLCDHTIVTFEKEMAEF------NAMKVEN 105
>gi|24585154|ref|NP_609950.1| lethal (2) 37Cg, isoform A [Drosophila melanogaster]
gi|74869335|sp|Q9VIZ0.1|RPAC2_DROME RecName: Full=Probable DNA-directed RNA polymerases I and III
subunit RPAC2; Short=RNA polymerases I and III subunit
AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
gi|7298551|gb|AAF53770.1| lethal (2) 37Cg, isoform A [Drosophila melanogaster]
gi|113204857|gb|ABI34162.1| IP05502p [Drosophila melanogaster]
Length = 105
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF T E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ D
Sbjct: 9 GDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDR 68
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDS 105
A ++LK ++L +C H TF K + +F AMK+++
Sbjct: 69 AIDILKRGLEDLEGLCDHTIVTFEKEMAEF------NAMKVEN 105
>gi|378730189|gb|EHY56648.1| DNA-directed RNA polymerase III subunit C19 [Exophiala dermatitidis
NIH/UT8656]
Length = 129
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD---PAREVLK 68
A+F + +EDHTL NA+R+ + ++P V FCGY+IPHPS+ ++++R+QT D A + L+
Sbjct: 41 ASFQIEKEDHTLGNALRYFVTKNPDVEFCGYTIPHPSETKMHLRIQTWEDTKTTAVDALR 100
Query: 69 DSCQELMLMCRHVRSTFAKAVDDF 92
+++M C V F +A D+F
Sbjct: 101 KGLEDMMEACDVVSEKFTEARDEF 124
>gi|405969527|gb|EKC34493.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Crassostrea
gigas]
Length = 549
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 48/67 (71%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D++ TF EDHTL N++R+ + ++P V FCGYS+PHPS++++N R+QT G+ +VL
Sbjct: 22 DETCKTFVFHNEDHTLGNSLRYMVMKNPEVQFCGYSVPHPSESKINFRIQTHGELGTDVL 81
Query: 68 KDSCQEL 74
K ++L
Sbjct: 82 KKGLKDL 88
>gi|380486342|emb|CCF38765.1| hypothetical protein CH063_09777 [Colletotrichum higginsianum]
Length = 140
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F +E HTL NA+RF + ++P V FC Y+IPHPS+A++NIR+QT A L+
Sbjct: 57 ASFEFIDEGHTLGNALRFIIMKNPDVEFCAYAIPHPSEAKMNIRIQTYDGTAVAALQKGL 116
Query: 72 QELMLMCRHVRSTFAKAVDDFRTS 95
++L + V F +A D+F S
Sbjct: 117 KDLQALSDTVAEEFIRAKDEFGRS 140
>gi|156084318|ref|XP_001609642.1| RNA polymerase small subunit protein [Babesia bovis T2Bo]
gi|154796894|gb|EDO06074.1| RNA polymerase small subunit protein, putative [Babesia bovis]
Length = 96
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 51/87 (58%)
Query: 11 NATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDS 70
N TFS+ EDHTL NAVR L + V F GYS+PHP VNIR+QTTG PA ++ +
Sbjct: 10 NITFSIENEDHTLGNAVRTLLVEREDVFFAGYSVPHPMQPEVNIRIQTTGKPAVKIFVEC 69
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSEK 97
+L+ +C + F A + T EK
Sbjct: 70 LDDLVEVCNVLTKAFIDAGAENYTDEK 96
>gi|412986016|emb|CCO17216.1| predicted protein [Bathycoccus prasinos]
Length = 133
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 9/83 (10%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT----TGDPA-REV 66
AT+SL EDHTL N +R+ LN++P V GYS+PHP + +VN+RVQT T D A RE
Sbjct: 36 ATYSLQNEDHTLGNCLRYQLNKNPGVALAGYSVPHPMERKVNVRVQTIQPLTADGAMREA 95
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L D ++ +C HV TF A+
Sbjct: 96 LLD----VVSICEHVTETFEAAL 114
>gi|317035305|ref|XP_001396609.2| DNA-directed RNA polymerases I and III subunit RPAC2 [Aspergillus
niger CBS 513.88]
Length = 138
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDS 70
A+F E HTL NA+R+ + ++P V FCGY+IPHPS+ ++N+R+QT A E L+
Sbjct: 47 ASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEALEKG 106
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSE 96
LM +C V F A DDF ++
Sbjct: 107 LDTLMDLCDVVTDKFTTARDDFNAAQ 132
>gi|345560677|gb|EGX43802.1| hypothetical protein AOL_s00215g538 [Arthrobotrys oligospora ATCC
24927]
Length = 141
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 5 AFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PA 63
A D S A+F EDHTL NA+R+ + ++P+V FCGYSIPHPS+ ++N+R+QT G+ A
Sbjct: 47 ATDDDSCASFQFENEDHTLGNALRWIIMKNPQVEFCGYSIPHPSETKMNMRIQTYGEITA 106
Query: 64 REVLKDSCQELMLMCRHVRSTF 85
++ L +L +C V F
Sbjct: 107 KDALIKGLADLRDLCDVVTDKF 128
>gi|326476483|gb|EGE00493.1| DNA-directed RNA polymerase I and III [Trichophyton tonsurans CBS
112818]
Length = 147
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVL 67
++ A+F EDHTL NA+R+ + ++P V FCGY+IPHPS+A++N+R+QT VL
Sbjct: 56 ETAASFQFEGEDHTLGNALRYVIMKNPDVEFCGYTIPHPSEAKMNLRIQTYDSTKVFTVL 115
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
+ +LM +C V F + D F S K+Q
Sbjct: 116 EKGLSDLMDLCDIVTEKFTLSRDAFEAS-KIQ 146
>gi|358369667|dbj|GAA86281.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus kawachii IFO 4308]
Length = 137
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDS 70
A+F E HTL NA+R+ + ++P V FCGY+IPHPS+ ++N+R+QT A E L+
Sbjct: 46 ASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEALEKG 105
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSE 96
LM +C V F A DDF ++
Sbjct: 106 LDTLMDLCDVVTDKFTTARDDFNAAQ 131
>gi|350636095|gb|EHA24455.1| hypothetical protein ASPNIDRAFT_40356 [Aspergillus niger ATCC 1015]
Length = 138
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDS 70
A+F E HTL NA+R+ + ++P V FCGY+IPHPS+ ++N+R+QT A E L+
Sbjct: 47 ASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEALEKG 106
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSE 96
LM +C V F A DDF ++
Sbjct: 107 LDTLMDLCDVVTDKFTTARDDFNAAQ 132
>gi|85084361|ref|XP_957305.1| hypothetical protein NCU00419 [Neurospora crassa OR74A]
gi|28918394|gb|EAA28069.1| hypothetical protein NCU00419 [Neurospora crassa OR74A]
Length = 156
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDS 70
A+F +E+HTL NA+R+ + ++P V FC Y+IPHPS+A++N+R+QT G A E L+
Sbjct: 66 ASFEFLDENHTLGNALRYVIMKNPDVEFCAYAIPHPSEAKMNVRIQTYEGTTAVEALRKG 125
Query: 71 CQELMLMCRHVRSTFAKAVDDF 92
+++ +C V F +A DF
Sbjct: 126 LRDIQDLCDVVSDKFLEARKDF 147
>gi|225678511|gb|EEH16795.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 201
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG-DPAREVL 67
++ +F EDHTL NA+R+ + ++P V FCGY++PHPS+A++N+R+QT A VL
Sbjct: 111 ETAVSFQFDREDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTYDTTTAIAVL 170
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
+ +LM +C V TF +A + F S+
Sbjct: 171 EKGFDDLMELCDVVTETFTEAKNAFDGSK 199
>gi|443730362|gb|ELU15913.1| hypothetical protein CAPTEDRAFT_128661, partial [Capitella
teleta]
Length = 94
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP---AR 64
D++ ATF L EDHTL N++R + ++P V FCGYS+PHPS+ ++N+R+QT G +
Sbjct: 9 DETCATFVLHGEDHTLGNSLRHMIMKNPDVEFCGYSVPHPSETKINLRIQTKGTNRVISM 68
Query: 65 EVLKDSCQELMLMCRHVRSTF 85
VL+ +L + +HV TF
Sbjct: 69 SVLEKGLNDLKKVSKHVLDTF 89
>gi|134082123|emb|CAK42239.1| unnamed protein product [Aspergillus niger]
Length = 153
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDS 70
A+F E HTL NA+R+ + ++P V FCGY+IPHPS+ ++N+R+QT A E L+
Sbjct: 62 ASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEALEKG 121
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSE 96
LM +C V F A DDF ++
Sbjct: 122 LDTLMDLCDVVTDKFTTARDDFNAAQ 147
>gi|115386266|ref|XP_001209674.1| hypothetical protein ATEG_06988 [Aspergillus terreus NIH2624]
gi|114190672|gb|EAU32372.1| hypothetical protein ATEG_06988 [Aspergillus terreus NIH2624]
Length = 142
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
++ A+F E HTL NA+R+ + ++P+V FCGY+IPHPS+ ++N+R+QT A E L
Sbjct: 48 ETAASFQFEGEGHTLGNALRYAIMKNPQVEFCGYTIPHPSETKMNLRIQTYDTTNAVEAL 107
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
+ LM +C V F A D F +E
Sbjct: 108 EKGLDSLMDLCDVVTEKFTDARDAFNAAE 136
>gi|295293293|gb|ADF87912.1| MIP21960p [Drosophila melanogaster]
Length = 128
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF T E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ D
Sbjct: 29 GDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDR 88
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDF 92
A ++LK ++L +C H TF K + +F
Sbjct: 89 AIDILKRGLEDLEGLCDHTIVTFEKEMAEF 118
>gi|296417394|ref|XP_002838343.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634271|emb|CAZ82534.1| unnamed protein product [Tuber melanosporum]
Length = 105
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-----PAR 64
+A+F + EDHTL NA+R+ + ++P V FCGYSIPHPS+ ++NIR+Q +
Sbjct: 8 GSASFEILGEDHTLGNALRYIIMKNPEVEFCGYSIPHPSEEKMNIRIQIYPEYWEHTKPY 67
Query: 65 EVLKDSCQELMLMCRHVRSTFAKAVDDF 92
+ L +L +C H+ F +A D+F
Sbjct: 68 DALMKGLDDLADLCDHITHAFKEARDNF 95
>gi|302660638|ref|XP_003021996.1| hypothetical protein TRV_03890 [Trichophyton verrucosum HKI 0517]
gi|291185920|gb|EFE41378.1| hypothetical protein TRV_03890 [Trichophyton verrucosum HKI 0517]
Length = 147
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
++ A+F +EDHTL NA+R+ + ++P V FCGY++PHPS+A++N+R+QT VL
Sbjct: 56 ETAASFQFEDEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTVL 115
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
+ +LM +C V F + D F S+ Q
Sbjct: 116 EKGLNDLMDLCDVVTEKFTLSRDAFEASKMQQ 147
>gi|238494098|ref|XP_002378285.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus flavus NRRL3357]
gi|317148865|ref|XP_001822973.2| DNA-directed RNA polymerases I and III subunit RPAC2 [Aspergillus
oryzae RIB40]
gi|220694935|gb|EED51278.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus flavus NRRL3357]
gi|391872363|gb|EIT81490.1| DNA-directed RNA polymerase, subunit L [Aspergillus oryzae 3.042]
Length = 142
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
++ A+F E HTL NA+R+ + ++P+V FCGY+IPHPS+ ++N+R+QT A E L
Sbjct: 48 ETAASFQFEGEGHTLGNALRYAIMKNPQVEFCGYTIPHPSETKMNLRIQTYDTTNAVEAL 107
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
+ LM +C V F + D F SE
Sbjct: 108 EKGLDSLMDLCDVVTDKFTASRDAFNASE 136
>gi|119467720|ref|XP_001257666.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Neosartorya fischeri NRRL 181]
gi|119405818|gb|EAW15769.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Neosartorya fischeri NRRL 181]
Length = 142
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVL 67
++ A+F E HTL NA+R+ + ++P V FCGY+IPHPS+ ++N+R+QT A E L
Sbjct: 48 ETAASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYDSTTAVEAL 107
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
+ + LM +C V F A D F ++
Sbjct: 108 EKGLEALMDLCDVVTDKFTSARDAFNAAQ 136
>gi|296810458|ref|XP_002845567.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Arthroderma otae CBS 113480]
gi|238842955|gb|EEQ32617.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Arthroderma otae CBS 113480]
Length = 144
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
++ A+F EDHTL NA+R+ + ++P V FCGY++PHPS+A++N+R+QT VL
Sbjct: 53 ETAASFQFEGEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTVL 112
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
+ +LM +C V F + D+F S+
Sbjct: 113 EKGLSDLMDLCDVVTEKFTLSRDNFEASK 141
>gi|367015282|ref|XP_003682140.1| hypothetical protein TDEL_0F01180 [Torulaspora delbrueckii]
gi|359749802|emb|CCE92929.1| hypothetical protein TDEL_0F01180 [Torulaspora delbrueckii]
Length = 129
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG-DPAREV 66
D + A+F + EEDHTL NA+R+ + ++ V FCGYSIPHPS+ +N+R+QT G A +V
Sbjct: 44 DGTCASFQIAEEDHTLGNALRYVIMKNKDVEFCGYSIPHPSENLLNLRIQTYGATTAVDV 103
Query: 67 LKDSCQELMLMCRHVRSTF 85
L+ +LM +C V F
Sbjct: 104 LQKGLTDLMDLCDAVEDRF 122
>gi|194759330|ref|XP_001961902.1| GF15205 [Drosophila ananassae]
gi|190615599|gb|EDV31123.1| GF15205 [Drosophila ananassae]
Length = 106
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF E HTL NA++ +++ P V FCGY+IPHP++ +++ R+Q+ D
Sbjct: 9 GDEKNGEGSRTFVFMNEGHTLGNALKTIISRYPEVDFCGYTIPHPTEQKLHFRIQSHRDR 68
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDS 105
A ++LK ++L +C H TF +++F AMK+++
Sbjct: 69 AVDILKRGLEDLEALCDHTIVTFETEMNNF------NAMKVEN 105
>gi|118349948|ref|XP_001008255.1| DNA-directed RNA polymerase I subunit D [Tetrahymena thermophila]
gi|89290022|gb|EAR88010.1| DNA-directed RNA polymerase I subunit D [Tetrahymena thermophila
SB210]
Length = 150
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D++ AT++ +EDHTL N VR+ L + V FCGY+IPHPS+ ++N+R+QT + EVL
Sbjct: 57 DRTCATYTFYDEDHTLGNTVRYMLVKRKDVEFCGYTIPHPSENKMNLRLQTIKKNSNEVL 116
Query: 68 KDSCQELMLMCRHVRSTFAKAV 89
K+ L +C + F A+
Sbjct: 117 KEGLDSLAGLCDVLNDKFDAAM 138
>gi|392576372|gb|EIW69503.1| hypothetical protein TREMEDRAFT_71650 [Tremella mesenterica DSM
1558]
Length = 154
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D S TF L EDHTL NA+R+ L +DP V FCGYS PHPSD ++++RVQ + A E
Sbjct: 41 DYSACTFCLWNEDHTLGNALRWMLMKDPDVEFCGYSAPHPSDPKIHLRVQMYDNLSAVEC 100
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L+ + + L + + + S ++K++
Sbjct: 101 LRKALKNLRELFQSIDSAYSKSL 123
>gi|255945795|ref|XP_002563665.1| Pc20g11790 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588400|emb|CAP86508.1| Pc20g11790 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 137
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG-DPAREVL 67
++ A+F E HT+ NA+R+ + ++P V FCGY+IPHPSD ++N+R+QT A E L
Sbjct: 43 ETAASFQFEGEGHTMGNALRYAIMKNPAVEFCGYTIPHPSDPKMNVRIQTNDTTTALEAL 102
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDF 92
+ +LM +C V F A D F
Sbjct: 103 EKGFDDLMDLCDVVTEKFTAARDQF 127
>gi|402222155|gb|EJU02222.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 148
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 42/50 (84%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
D S+ATF + EEDHTL NA+R+ + ++P+V FCGYS+PHPS+ ++N+R+Q
Sbjct: 29 DYSHATFCIEEEDHTLGNALRWMIMKNPKVEFCGYSMPHPSEYKINLRIQ 78
>gi|326484083|gb|EGE08093.1| DNA-directed RNA polymerase I and III polypeptide [Trichophyton
equinum CBS 127.97]
Length = 147
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
++ A+F EDHTL NA+R+ + ++P V FCGY++PHPS+A++N+R+QT VL
Sbjct: 56 ETAASFQFEGEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTVL 115
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
+ +LM +C V F + D F S+ Q
Sbjct: 116 EKGLSDLMDLCDIVTEKFTLSRDAFEASKMQQ 147
>gi|403285030|ref|XP_003933845.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Saimiri boliviensis boliviensis]
Length = 134
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L +EDHTL N++ + L ++P V FCGY+ PS++++N+R+QT G
Sbjct: 30 MVQAAGTDRHCVTFVLHKEDHTLGNSLCYMLMKNPEVEFCGYTTTDPSESKINLRIQTQG 89
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ + +
Sbjct: 90 ALPAVEPFQRVLNELMNVCQHVLDKFEASIKNCK 123
>gi|358399593|gb|EHK48930.1| hypothetical protein TRIATDRAFT_297692 [Trichoderma atroviride IMI
206040]
Length = 154
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F T+E HTL NA+R+ + ++P V FC YSIPHPS+ ++NIR+QT A LK
Sbjct: 66 ASFEFTDEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEPKMNIRIQTYDGTAVNALKKGL 125
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
+L +C V F F + ++
Sbjct: 126 SDLQDVCDVVAEKFWSERQSFNAEQGIE 153
>gi|348672539|gb|EGZ12359.1| hypothetical protein PHYSODRAFT_361522 [Phytophthora sojae]
Length = 107
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDSC 71
T+ EEDHTL NA+R+ L ++P V FCGY+IPHPS+ +++IR+QT G PA E L+
Sbjct: 20 TYVFHEEDHTLGNALRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGAPADEALRSGL 79
Query: 72 QELMLMCRHVRSTFAKAVDDFR 93
+L + + + K + F+
Sbjct: 80 TDLRKVSTQIGDAYRKELKAFK 101
>gi|71028926|ref|XP_764106.1| RNA polymerase small subunit [Theileria parva strain Muguga]
gi|68351060|gb|EAN31823.1| RNA polymerase small subunit, putative [Theileria parva]
Length = 92
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%)
Query: 11 NATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDS 70
N TF + EDHTL N +R L + V F GYS+PHP + +N+R+QTTG PA EV D
Sbjct: 10 NITFCIENEDHTLGNTLRALLVERDDVVFAGYSVPHPMEPEMNVRIQTTGQPAVEVFLDC 69
Query: 71 CQELMLMCRHVRSTFAKAV 89
+++ +C + F KA+
Sbjct: 70 LDDMVKICDILTEKFEKAM 88
>gi|327295865|ref|XP_003232627.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
gi|326464938|gb|EGD90391.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
Length = 147
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
++ A+F EDHTL NA+R+ + ++P V FCGY++PHPS+A++N+R+QT VL
Sbjct: 56 ETAASFQFEGEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTVL 115
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
+ +LM +C V F + D F S+ Q
Sbjct: 116 EKGLSDLMDLCDVVTEKFTFSRDAFEASKMQQ 147
>gi|255722409|ref|XP_002546139.1| DNA-directed RNA polymerases I and III 14 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240136628|gb|EER36181.1| DNA-directed RNA polymerases I and III 14 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 128
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
G+ D ++A+F + +EDHTL NA+R+ + ++P V F GYSIPHPS+ ++N R+QT G+
Sbjct: 32 GSSEDGTSASFQIIDEDHTLGNALRYIIMKNPEVEFVGYSIPHPSENKLNFRIQTYGNIT 91
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVD--DFRTSE 96
A E L +C + F + ++ F T E
Sbjct: 92 AVEAFHMGLDNLSELCGVIEDKFQETLEKGGFSTEE 127
>gi|195398063|ref|XP_002057644.1| GJ17990 [Drosophila virilis]
gi|194141298|gb|EDW57717.1| GJ17990 [Drosophila virilis]
Length = 106
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ +
Sbjct: 9 GDEKNGDGSRTFVFINEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRER 68
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTS 95
A ++LK ++L +C H TF K ++ F S
Sbjct: 69 AIDLLKRGLEDLEALCDHTIETFEKEMNGFNAS 101
>gi|358387089|gb|EHK24684.1| hypothetical protein TRIVIDRAFT_31426 [Trichoderma virens Gv29-8]
Length = 155
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F T+E HTL NA+R+ + ++P V FC YSIPHPS+ ++NIR+QT A LK
Sbjct: 67 ASFEFTDEGHTLGNALRYVIMKNPDVEFCAYSIPHPSEPKMNIRIQTYDGTAVNALKKGL 126
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSEKV 98
+L +C V F F + + +
Sbjct: 127 SDLQDVCDVVAEEFWTKRQQFNSEQGI 153
>gi|212546345|ref|XP_002153326.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
gi|210064846|gb|EEA18941.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
Length = 100
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 42/54 (77%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE 65
A+F EE HTL NA+R+ + ++P+V FCGY+IPHPS+A++N+R+QT G P +
Sbjct: 44 ASFQFKEEGHTLGNALRYVIMKNPKVEFCGYTIPHPSEAKMNLRIQTYGIPPSQ 97
>gi|425773962|gb|EKV12287.1| hypothetical protein PDIG_46120 [Penicillium digitatum PHI26]
gi|425782350|gb|EKV20265.1| hypothetical protein PDIP_18050 [Penicillium digitatum Pd1]
Length = 138
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG-DPAREVL 67
++ A+F E HT+ NA+R+ + ++P V FCGY+IPHPSD ++N+R+QT A E L
Sbjct: 44 ETAASFQFEGEGHTMGNALRYAIMKNPAVEFCGYTIPHPSDPKMNVRIQTNDTTTALEAL 103
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDF 92
+ +LM +C V F + D F
Sbjct: 104 EKGFNDLMDLCDVVTEKFTASRDQF 128
>gi|310789432|gb|EFQ24965.1| hypothetical protein GLRG_00109 [Glomerella graminicola M1.001]
Length = 141
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F +E HTL NA+R+ + ++P V FC Y+IPHPS+A++NIR+QT A L+
Sbjct: 58 ASFEFIDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEAKMNIRIQTYDGTAVSALQKGL 117
Query: 72 QELMLMCRHVRSTFAKAVDDFRTS 95
++L + V F +A ++F S
Sbjct: 118 KDLQALSDTVAEEFIRAKEEFGRS 141
>gi|320590409|gb|EFX02852.1| DNA-directed RNA polymerase 1 and 3 polypeptide [Grosmannia
clavigera kw1407]
Length = 171
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F +E HTL N++R+ + ++P V FC Y+IPHPS+A++NIR+QT A + L+
Sbjct: 83 ASFEFLDEGHTLGNSLRYIIMKNPDVEFCAYTIPHPSEAKMNIRIQTYEGTALQALEKGL 142
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSEKVQA 100
+L +C V + A ++F + +A
Sbjct: 143 HDLQDLCDVVEEKYWTARNEFVAAATAEA 171
>gi|340522545|gb|EGR52778.1| predicted protein [Trichoderma reesei QM6a]
Length = 151
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F T+E HTL NA+R+ + ++P V FC YSIPHPS+ ++NIR+QT A LK
Sbjct: 63 ASFEFTDEGHTLGNALRYVIMKNPDVEFCAYSIPHPSEPKMNIRIQTYDGSAVNALKKGL 122
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSEKV 98
+L +C V F F + +
Sbjct: 123 SDLQDVCDVVAEEFWTKRQQFNAEQGI 149
>gi|367028040|ref|XP_003663304.1| hypothetical protein MYCTH_2036258, partial [Myceliophthora
thermophila ATCC 42464]
gi|347010573|gb|AEO58059.1| hypothetical protein MYCTH_2036258, partial [Myceliophthora
thermophila ATCC 42464]
Length = 157
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDS 70
A+F E HTL NA+R+ + ++P V FC Y+IPHPS+A++N+R+QT G A E L+
Sbjct: 74 ASFEFLNEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEAKMNVRIQTFEGTTAIEALQKG 133
Query: 71 CQELMLMCRHVRSTFAKAVDDF 92
++L +C V F A D F
Sbjct: 134 LRDLQELCDIVTDKFIDARDRF 155
>gi|196012371|ref|XP_002116048.1| hypothetical protein TRIADDRAFT_30263 [Trichoplax adhaerens]
gi|190581371|gb|EDV21448.1| hypothetical protein TRIADDRAFT_30263 [Trichoplax adhaerens]
Length = 92
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
Q TF L E+HTL NAVR+ + ++P CGYS+PHPS ++N+R++T + A EV
Sbjct: 8 QDCQTFVLHGENHTLGNAVRYLIMKNPETKLCGYSVPHPSQHKINLRIETNNEKDAIEVF 67
Query: 68 KDSCQELMLMCRHVRSTFAKAV 89
+ Q+L +C HV TF ++
Sbjct: 68 RTGLQDLDQVCDHVLKTFDVSI 89
>gi|322699006|gb|EFY90771.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Metarhizium acridum CQMa 102]
Length = 154
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F T+E HTL NA+R+ + ++P V FC Y+IPHPS+ ++NIR+QT A + LK
Sbjct: 66 ASFEFTDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEPKMNIRIQTYSGTAVDALKKGL 125
Query: 72 QELMLMCRHVRSTF 85
+L +C V F
Sbjct: 126 ADLQDVCDVVSDEF 139
>gi|390599234|gb|EIN08631.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 111
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
GA D S ATF + +E HT+ NA+R+ + ++P+V FCGYS+PHPS+ +N+R+Q +
Sbjct: 13 GAEPDLSAATFQIADETHTIGNALRWMIMKNPKVEFCGYSVPHPSEPNINVRIQMYDNLS 72
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV 89
A + L D+ L + V +AK++
Sbjct: 73 ALDALIDALNRLDDLFAAVDEQYAKSL 99
>gi|389639282|ref|XP_003717274.1| DNA-directed RNA polymerase I and III polypeptide [Magnaporthe
oryzae 70-15]
gi|351643093|gb|EHA50955.1| DNA-directed RNA polymerase I and III polypeptide [Magnaporthe
oryzae 70-15]
Length = 149
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVL 67
++ A+F +E HT+ NA+R+ + ++P V C Y+IPHPS+ ++N+R+QT G A E L
Sbjct: 57 ETAASFEFLKEGHTMGNALRYIIMKNPEVELCAYAIPHPSEHKMNLRIQTYEGTTAIEAL 116
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDF 92
+ ++L +C V F A DDF
Sbjct: 117 EKGLKDLQELCDVVTDKFTIARDDF 141
>gi|358054588|dbj|GAA99514.1| hypothetical protein E5Q_06215 [Mixia osmundae IAM 14324]
Length = 171
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 17/119 (14%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDP 62
G D S+ATF + EEDHTL NA+R+ + ++P+V FCGYS PHPS+ ++++R+Q G
Sbjct: 20 GHAADMSSATFCILEEDHTLGNALRYMIMKNPQVQFCGYSQPHPSEDKIHLRIQMYDGLS 79
Query: 63 AREVLKD---SCQELMLMCR-HVRSTFAKAVDDFRTSE----------KVQAMKIDSKE 107
A E L+ S ++ +L R +S AK DF E ++A KI +E
Sbjct: 80 AYEALQSGLASLEDCILAIRDEYKSQLAKG--DFERVEDPDLATIKADAIEAAKIKQRE 136
>gi|70984198|ref|XP_747617.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus fumigatus Af293]
gi|66845244|gb|EAL85579.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus fumigatus Af293]
gi|159122404|gb|EDP47525.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus fumigatus A1163]
Length = 161
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 20/108 (18%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG-------- 60
++ A+F E HTL NA+R+ + ++P V FCGY+IPHPS+A++N+R+QT G
Sbjct: 48 ETAASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSEAKMNLRIQTYGMYFCHTLA 107
Query: 61 ------------DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
A E L+ + LM +C V F A D F ++
Sbjct: 108 RFDGADRNIADSTTAVEALEKGLEALMDLCDVVTDKFTSARDAFNAAQ 155
>gi|429855586|gb|ELA30535.1| DNA-directed RNA polymerase i and iii 14 kda polypeptide
[Colletotrichum gloeosporioides Nara gc5]
Length = 138
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKD 69
S A+F +E HTL NA+R+ + ++P V FC Y+IPHPS+A++N+R+QT A L+
Sbjct: 53 SAASFEFIDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEAKMNLRIQTYDGTAVAALQQ 112
Query: 70 SCQELMLMCRHVRSTFAKAVDDFRTS 95
++L + V F ++ ++F S
Sbjct: 113 GLKDLQALSDTVAEEFIRSKEEFGRS 138
>gi|195115228|ref|XP_002002166.1| GI17231 [Drosophila mojavensis]
gi|193912741|gb|EDW11608.1| GI17231 [Drosophila mojavensis]
Length = 106
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ +
Sbjct: 9 GDEKNGDGSRTFVFINEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRER 68
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTS 95
A ++LK ++L +C H TF K ++ F +
Sbjct: 69 AIDLLKRGLEDLEALCDHTIETFEKEMNTFNAT 101
>gi|46125119|ref|XP_387113.1| hypothetical protein FG06937.1 [Gibberella zeae PH-1]
Length = 146
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F T+E HTL NA+R+ + ++P V FC YSIPHPS+ ++NIR+QT A + LK
Sbjct: 58 ASFEFTDEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEPKMNIRIQTYSGTAVDALKKGL 117
Query: 72 QELMLMCRHVRSTF 85
++ +C V F
Sbjct: 118 VDIQEVCDVVADEF 131
>gi|342865951|gb|EGU71952.1| hypothetical protein FOXB_17513 [Fusarium oxysporum Fo5176]
Length = 147
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F T+E HTL NA+R+ + ++P V FC YSIPHPS+ ++NIR+QT A + LK
Sbjct: 59 ASFEFTDEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEPKMNIRIQTYSGTAVDALKKGL 118
Query: 72 QELMLMCRHVRSTF 85
++ +C V F
Sbjct: 119 VDIQEVCDVVADEF 132
>gi|346324843|gb|EGX94440.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide [Cordyceps
militaris CM01]
Length = 162
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F EE HT+ NA+R+ + ++P V FC Y+IPHPS+ ++N+R+QT A + LK
Sbjct: 74 ASFEFIEEGHTMGNALRYIIMKNPDVEFCAYTIPHPSEDKMNVRIQTYEGTAIDALKKGL 133
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSEKV 98
+L +C V F D F +
Sbjct: 134 DDLQQVCDVVADEFIAKRDQFNADNGI 160
>gi|322707085|gb|EFY98664.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Metarhizium anisopliae ARSEF 23]
Length = 155
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F T+E HTL NA+R+ + ++P V FC Y+IPHPS+ ++NIR+QT A + LK
Sbjct: 67 ASFEFTDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEPKMNIRIQTYSGTAVDALKKGL 126
Query: 72 QELMLMCRHVRSTF 85
+L +C V F
Sbjct: 127 VDLQDVCDVVSDEF 140
>gi|388851779|emb|CCF54585.1| related to Rpc19-DNA-directed RNA polymerases I and III, 18KD
subunit [Ustilago hordei]
Length = 164
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP- 62
G D S TF L EEDHTL N++R+ + +DPRV FCGYS PHPS+ ++++R+Q
Sbjct: 26 GYEPDFSAVTFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYDKAS 85
Query: 63 AREVLKDSCQEL 74
A E L+D+ + L
Sbjct: 86 ALEALRDAIENL 97
>gi|440468859|gb|ELQ37993.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Magnaporthe oryzae Y34]
gi|440487550|gb|ELQ67333.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Magnaporthe oryzae P131]
Length = 151
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ---TTGDPARE 65
++ A+F +E HT+ NA+R+ + ++P V C Y+IPHPS+ ++N+R+Q T G A E
Sbjct: 57 ETAASFEFLKEGHTMGNALRYIIMKNPEVELCAYAIPHPSEHKMNLRIQTYATEGTTAIE 116
Query: 66 VLKDSCQELMLMCRHVRSTFAKAVDDF 92
L+ ++L +C V F A DDF
Sbjct: 117 ALEKGLKDLQELCDVVTDKFTIARDDF 143
>gi|145344709|ref|XP_001416869.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577095|gb|ABO95162.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 100
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT---GDPAREVLK 68
ATF+L EDHTLANA+R LN + V CGYS+PHP +RVQTT G A+ ++
Sbjct: 13 ATFTLAGEDHTLANALRHALNGNADVALCGYSVPHPMKREARVRVQTTGANGTTAQGAMR 72
Query: 69 DSCQELMLMCRHVRSTFAKAVDDF 92
D+ +++ +C VR + A F
Sbjct: 73 DALLDVISVCDRVREAYEDAERAF 96
>gi|392595387|gb|EIW84710.1| RBP11-like subunits of RNA polymerase [Coniophora puteana
RWD-64-598 SS2]
Length = 114
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
GA D S AT+ + +E HT+ NA+R+ L ++P+V FCGYS+PHPS+ +N+R+Q +
Sbjct: 16 GAAADLSAATYQIFDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENHINVRIQMYDELS 75
Query: 63 AREVLKDSCQELMLMCRHVRSTF 85
+ + L ++ L +C V +
Sbjct: 76 SLDALLEALSNLDDLCETVEQKY 98
>gi|290983816|ref|XP_002674624.1| 13 to 16 kDa subunit of RNA polymerase [Naegleria gruberi]
gi|284088215|gb|EFC41880.1| 13 to 16 kDa subunit of RNA polymerase [Naegleria gruberi]
Length = 157
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP--ARE 65
D S +TF +E HT+ N+VR L ++ +V+FCGY++PHP +A++N+R+QT G+ A+E
Sbjct: 69 DASVSTFIFHKESHTMGNSVRHMLMKNKKVSFCGYTVPHPLEAKMNLRLQTVGEKYTAKE 128
Query: 66 VLKDSCQELMLMCRHVRSTFAKAVDDF 92
L++ L + V S F A+ F
Sbjct: 129 TLEEGLVNLQQVTETVMSKFDNALAAF 155
>gi|315045149|ref|XP_003171950.1| DNA-directed RNA polymerase I and III subunit RPAC2 [Arthroderma
gypseum CBS 118893]
gi|311344293|gb|EFR03496.1| DNA-directed RNA polymerase I and III subunit RPAC2 [Arthroderma
gypseum CBS 118893]
Length = 157
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
++ A+F EDHTL NA+R+ + ++P V FCGY++PHPS+A++N+R+QT L
Sbjct: 66 ETAASFQFEAEDHTLGNALRYMIMKNPDVEFCGYTMPHPSEAKLNLRIQTYDSTDVFTAL 125
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
+ +LM +C V F + ++F S+
Sbjct: 126 EKGLDDLMDLCDVVTEKFVISRENFEASK 154
>gi|426195181|gb|EKV45111.1| hypothetical protein AGABI2DRAFT_186894 [Agaricus bisporus var.
bisporus H97]
Length = 112
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA 63
GA D S ATF + +E HT+ NA+R+ L ++P+V FCGYS+PHPS+ +N+R+Q + +
Sbjct: 14 GASADLSAATFQIHDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENVINVRIQMYDNIS 73
Query: 64 R-EVLKDSCQELMLMCRHVRSTFAKAV 89
+ L + L +C + + +++
Sbjct: 74 SFDALISALDNLDHLCESIEDAYLESL 100
>gi|403367466|gb|EJY83556.1| DNA-directed RNA polymerase II subunit RPB11 [Oxytricha trifallax]
Length = 138
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAREVLKD 69
AT ++ EEDHTL N VR L +D RV F GY +PHP + +V I+VQT G +PA E +++
Sbjct: 20 ATITIEEEDHTLGNTVRVQLLKDTRVRFSGYRMPHPLEHKVEIKVQTNGEINPA-EAVQN 78
Query: 70 SCQELMLMCRHVRSTFAKAVDDFR 93
+C ++++F AV+ F+
Sbjct: 79 ACLNTHAHVEQIKTSFQMAVNAFK 102
>gi|403359539|gb|EJY79434.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 138
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAREVLKD 69
AT ++ EEDHTL N VR L +D RV F GY +PHP + +V I+VQT G +PA E +++
Sbjct: 20 ATITIEEEDHTLGNTVRVQLLKDTRVRFSGYRMPHPLEHKVEIKVQTNGEINPA-EAVQN 78
Query: 70 SCQELMLMCRHVRSTFAKAVDDFR 93
+C ++++F AV+ F+
Sbjct: 79 ACLNTHAHVEQIKTSFQMAVNAFK 102
>gi|71005330|ref|XP_757331.1| hypothetical protein UM01184.1 [Ustilago maydis 521]
gi|46096735|gb|EAK81968.1| hypothetical protein UM01184.1 [Ustilago maydis 521]
Length = 164
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREV 66
D S TF L EEDHTL N++R+ + +DPRV FCGYS PHPS+ ++++R+Q + A +
Sbjct: 30 DFSAVTFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYDNASALDA 89
Query: 67 LKDSCQEL 74
L+D+ + L
Sbjct: 90 LRDAIENL 97
>gi|345481326|ref|XP_001604778.2| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Nasonia vitripennis]
Length = 107
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLK 68
+ + TF +E HTL N +R + P V FCGY++PHP++A+++ R+Q A ++L+
Sbjct: 15 EKSRTFVFQDEGHTLGNVLRSIVAHYPDVEFCGYTVPHPAEAKMHFRIQAKKGRAVDILR 74
Query: 69 DSCQELMLMCRHVRSTFAKAVDDFRT 94
++L +C H TF KA+D+ +
Sbjct: 75 RGLEDLSKVCDHTIKTFEKAMDEHKN 100
>gi|195050014|ref|XP_001992809.1| GH13479 [Drosophila grimshawi]
gi|193899868|gb|EDV98734.1| GH13479 [Drosophila grimshawi]
Length = 106
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ +
Sbjct: 9 GDEKNGDGSRTFVFNNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRER 68
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTS 95
A ++LK ++L +C H +TF ++ F +
Sbjct: 69 AIDLLKRGLEDLEALCDHTMNTFETEMNSFNAT 101
>gi|301112645|ref|XP_002998093.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262112387|gb|EEY70439.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 107
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDSC 71
T+ EEDHTL NAVR+ L ++P V FCGY+IPHPS+ +++IR+QT G A E L+
Sbjct: 20 TYVFHEEDHTLGNAVRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGALADEALRSGL 79
Query: 72 QELMLMCRHVRSTFAKAVDDFR 93
+L + + + K + F+
Sbjct: 80 TDLRKVSTQIGDAYRKELKAFK 101
>gi|302916795|ref|XP_003052208.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733147|gb|EEU46495.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 147
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F +E HTL NA+R+ + ++P V FC YSIPHPS+ ++NIR+QT A + LK
Sbjct: 59 ASFEFVDEGHTLGNALRYIVMKNPDVEFCAYSIPHPSEPKMNIRIQTYSGTAVDALKKGL 118
Query: 72 QELMLMCRHVRSTF 85
+L +C V F
Sbjct: 119 TDLQDVCDVVADEF 132
>gi|343427064|emb|CBQ70592.1| related to Rpc19-DNA-directed RNA polymerases I and III, 18KD
subunit [Sporisorium reilianum SRZ2]
Length = 164
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREV 66
D S TF L EEDHTL N++R+ + +DPRV FCGYS PHPS+ ++++R+Q A +
Sbjct: 30 DFSAVTFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYDHASALDA 89
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L+D+ + L + + + K++
Sbjct: 90 LRDAIENLDQLFAAIGEAYDKSL 112
>gi|357605525|gb|EHJ64656.1| hypothetical protein KGM_09653 [Danaus plexippus]
Length = 103
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N T+ E HTL NA++ +++ V FCGY++PHP++A+++ R+QT P
Sbjct: 11 GDEDNGLTCRTYVFQNESHTLGNALKCIIDRYEDVQFCGYTVPHPAEAKMHFRIQTQETP 70
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDF 92
++LK +L +C H F K V +F
Sbjct: 71 TLDILKRGLTDLQKVCEHTIDLFEKEVKEF 100
>gi|400599076|gb|EJP66780.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Beauveria
bassiana ARSEF 2860]
Length = 156
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLK 68
++ A+F EE HT+ NA+R+ + ++P V FC Y+IPHPS+ ++NIR+QT A + LK
Sbjct: 65 ETAASFEFIEEGHTMGNALRYIIMKNPDVEFCAYTIPHPSEDKMNIRIQTYEGTAIDALK 124
Query: 69 DSCQELMLMCRHVRSTF 85
+L +C V F
Sbjct: 125 KGLGDLQQVCDVVADEF 141
>gi|443895240|dbj|GAC72586.1| DNA-directed RNA polymerase, subunit L [Pseudozyma antarctica
T-34]
Length = 164
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREV 66
D S TF L EEDHTL N++R+ + +DPRV FCGYS PHPS+ ++++RVQ A +
Sbjct: 30 DFSAVTFCLKEEDHTLGNSLRYMIMKDPRVEFCGYSNPHPSENKIHLRVQMYDRASALDA 89
Query: 67 LKDSCQEL 74
L+D+ + L
Sbjct: 90 LRDAIENL 97
>gi|154311455|ref|XP_001555057.1| hypothetical protein BC1G_06580 [Botryotinia fuckeliana B05.10]
Length = 110
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 38/49 (77%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
A+F +EDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIR+QT G
Sbjct: 62 ASFEFKKEDHTLGNALRYIIMKNPDVEFCGYSIPHPSEELMNIRIQTYG 110
>gi|225709920|gb|ACO10806.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus
rogercresseyi]
Length = 102
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVL 67
+S TF E+HTL NA+R + Q+P V FCGYSIPHP++ ++ +R+QT PA++ L
Sbjct: 19 ESCRTFIFKGENHTLGNALRSVILQNPDVLFCGYSIPHPAEDQMPLRIQTVSSVPAQDAL 78
Query: 68 KDSCQELMLMCRHVRSTFAKAV 89
+ ++L MC V S F A+
Sbjct: 79 RRGLEDLKDMCSVVSSKFNSAL 100
>gi|449544336|gb|EMD35309.1| hypothetical protein CERSUDRAFT_156998 [Ceriporiopsis
subvermispora B]
Length = 111
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 41/54 (75%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
GA D S AT+ + +E HTL NA+R+ L ++P+V FCGYS+PHPS+ +N+R+Q
Sbjct: 13 GAEPDLSAATYQIHDESHTLGNALRWMLMKNPKVEFCGYSVPHPSENHINMRIQ 66
>gi|392562075|gb|EIW55256.1| RBP11-like subunits of RNA polymerase [Trametes versicolor
FP-101664 SS1]
Length = 111
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDP 62
GA D S AT+ + +E HT+ NA+R+ L ++ +V FCGYS+PHPS+ +N+R+Q G
Sbjct: 13 GAEPDLSAATYQIHDESHTIGNALRWMLMKNEKVEFCGYSVPHPSENHINMRIQMYDGLS 72
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVD 90
+ L + ++L +C + +AK+++
Sbjct: 73 SLTALIQALKDLDELCVTIDGEYAKSLE 100
>gi|116208000|ref|XP_001229809.1| hypothetical protein CHGG_03293 [Chaetomium globosum CBS 148.51]
gi|88183890|gb|EAQ91358.1| hypothetical protein CHGG_03293 [Chaetomium globosum CBS 148.51]
Length = 155
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDS 70
A+F E HTL NA+R+ + ++P V FC Y+IPHPS+ ++N+R+QT G A E L+
Sbjct: 71 ASFEFLNEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEPKMNVRIQTFDGTTAVEALEKG 130
Query: 71 CQELMLMCRHVRSTFAKAVDDF 92
++L +C V F A + F
Sbjct: 131 LRDLQELCDVVTDEFVVAREKF 152
>gi|300175414|emb|CBK20725.2| unnamed protein product [Blastocystis hominis]
Length = 100
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
+E+G G ++ TF E HTL N +R + Q V FCGYS+PHP +A++++RVQTTG
Sbjct: 12 VEYGV-GINTSRTFVFYNEGHTLGNPIRTIMMQQEGVEFCGYSVPHPVEAKMHLRVQTTG 70
Query: 61 DPAREVLKDSCQELMLMCRHVRSTFAKAVD 90
+ A E L + +C + + KA++
Sbjct: 71 ENATEALIKGLRTFEHICDVIGDRYEKALN 100
>gi|340959302|gb|EGS20483.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 164
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT---TGDPAREVLK 68
A+F E HTL NA+ + +N++P V FC Y+IPHPS+ ++N+R+QT +G A + L+
Sbjct: 72 ASFEFLNEGHTLGNALSYIINRNPDVEFCAYAIPHPSENKMNVRIQTFEGSGTTAIQALE 131
Query: 69 DSCQELMLMCRHVRSTFAKAVDDF 92
++L +C V F +A + F
Sbjct: 132 KGLRDLQDLCDVVTDKFIEAREKF 155
>gi|403344569|gb|EJY71632.1| DNA-directed RNA polymerase I subunit D [Oxytricha trifallax]
Length = 154
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 5 AFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT---GD 61
A GD +NAT+S EDHTL N +R + ++ +V FC YS+PHPS+ +N+R+Q GD
Sbjct: 59 ADGDNTNATYSFLNEDHTLGNLLRNVIIKNNQVEFCAYSVPHPSEPIMNVRLQVAPKCGD 118
Query: 62 PAREVLKDSCQELMLMCRHVRSTFAKAVDDFRT 94
++VLK + + M + F A+D F+
Sbjct: 119 -TKKVLKHGLKRISKMSDVLGEKFQNALDKFQN 150
>gi|395324917|gb|EJF57348.1| RBP11-like subunits of RNA polymerase [Dichomitus squalens
LYAD-421 SS1]
Length = 111
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 41/54 (75%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
GA D S AT+ + +E HT+ NA+R+ L ++P+V FCGYS+PHPS+ +N+R+Q
Sbjct: 13 GAAPDLSAATYQIHDESHTIGNALRWMLMKNPKVEFCGYSVPHPSENHINMRIQ 66
>gi|253745917|gb|EET01521.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Giardia intestinalis ATCC 50581]
Length = 95
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
++ NATF + EDHTL N +R+ LN +P V+F GYS+PHP++ ++N+R+Q+ A + L
Sbjct: 2 EEKNATFVIVNEDHTLGNCIRYCLNCNPDVSFAGYSVPHPAEPKLNLRIQSDIRSATDCL 61
Query: 68 KDSCQELMLMCRHVRSTFAKAVDD 91
+ + + +R A+ +D
Sbjct: 62 LQAADLMYNIASVLRQRLAEVYED 85
>gi|149689200|gb|ABR27969.1| DNA-directed RNA polymerase II 13.3 kda polypeptide [Triatoma
infestans]
Length = 117
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVLKDS 70
A F++ +EDHTL N +R L +DP+V F GY +PHP D + IR+QTT D + VLK++
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDPKVLFAGYKVPHPLDPKFVIRIQTTNDETPQSVLKNA 90
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+L+ F +A+ D
Sbjct: 91 ITDLISELSLFEERFKEAIKD 111
>gi|406700270|gb|EKD03443.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 162
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
G D S TF L EEDHTL NA+R+ + +DP V +CGYS PHPS+ ++++RVQ
Sbjct: 43 GHEPDYSACTFCLWEEDHTLGNALRWMIMKDPDVEYCGYSAPHPSEPKIHLRVQ 96
>gi|405118365|gb|AFR93139.1| DNA-directed RNA polymerase [Cryptococcus neoformans var. grubii
H99]
Length = 155
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDP 62
G D S TF+L +EDHTL NA+R+ + +DP V FCGY+ PHPS+ ++++R+Q
Sbjct: 32 GHEPDYSACTFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQS 91
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV--DDF 92
A + L+ + L + V T++ ++ DD+
Sbjct: 92 AVDCLRRALSNLRDLLNAVNDTYSSSLQNDDY 123
>gi|281200289|gb|EFA74510.1| putative RNA polymerase III subunit [Polysphondylium pallidum
PN500]
Length = 130
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 39/50 (78%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
ATF +EDHTL NA+ + L ++P+V F GYSIPHPSD ++N+R+QT G+
Sbjct: 28 ATFIFVDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNKMNLRIQTKGN 77
>gi|401883042|gb|EJT47278.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
2479]
Length = 184
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
G D S TF L EEDHTL NA+R+ + +DP V +CGYS PHPS+ ++++RVQ
Sbjct: 65 GHEPDYSACTFCLWEEDHTLGNALRWMIMKDPDVEYCGYSAPHPSEPKIHLRVQ 118
>gi|402077371|gb|EJT72720.1| DNA-directed RNA polymerase I and III polypeptide [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 157
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDS 70
A+F +E HTL NA+R+ + ++P V C Y+IPHPS+ ++N+R+QT G A E L+
Sbjct: 68 ASFEFQKEGHTLGNALRYIIMKNPEVELCAYAIPHPSEHKMNLRIQTYDGTTAIEALEKG 127
Query: 71 CQELMLMCRHVRSTFAKAVDDF 92
++L +C V F A ++F
Sbjct: 128 LRDLQDLCDVVTDKFTVAKEEF 149
>gi|355712710|gb|AES04440.1| polymerase I polypeptide D, 16kDa [Mustela putorius furo]
Length = 90
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
>gi|331230585|ref|XP_003327957.1| DNA-directed RNA polymerase III subunit C19 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309306947|gb|EFP83538.1| DNA-directed RNA polymerase III subunit C19 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 154
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Query: 7 GDQSNA-TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
GD+ +A TFSL +EDHTL N++R+ + ++P V FCGYS+PHPS+ ++++R+Q
Sbjct: 30 GDKYDAMTFSLKDEDHTLGNSLRYIIMKNPEVEFCGYSLPHPSEPKLHLRIQ 81
>gi|164661103|ref|XP_001731674.1| hypothetical protein MGL_0942 [Malassezia globosa CBS 7966]
gi|159105575|gb|EDP44460.1| hypothetical protein MGL_0942 [Malassezia globosa CBS 7966]
Length = 159
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKD 69
ATF +EDHTL N +R + P V FCGY +PHP + RV +++QT G PA EVL+
Sbjct: 32 ATFIFNKEDHTLGNMLRHAVLAQPGVLFCGYKVPHPLEPRVLVKIQTDGSLTPA-EVLQQ 90
Query: 70 SCQELMLMCRHVRSTFAKAV 89
+C +L++ ++ + K V
Sbjct: 91 ACTKLIVQMGALKQGWTKEV 110
>gi|302410981|ref|XP_003003324.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Verticillium
albo-atrum VaMs.102]
gi|261358348|gb|EEY20776.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Verticillium
albo-atrum VaMs.102]
Length = 146
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F E HTL NA+R+ + ++P V FC YSIPHPS+ +NIR+QT A L
Sbjct: 59 ASFEFKAEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEDLMNIRIQTYDGTAVSALSKGL 118
Query: 72 QELMLMCRHVRSTFAKAVDDF 92
++L +C + F + D F
Sbjct: 119 KDLQGLCDVMTDEFTRERDSF 139
>gi|321478705|gb|EFX89662.1| hypothetical protein DAPPUDRAFT_40279 [Daphnia pulex]
Length = 86
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQ 72
TF E HTL NA+R + ++P V FCGY+IPHPS+ ++++R++T A + L++ +
Sbjct: 3 TFIFKGEGHTLGNAIRTIILKNPDVIFCGYTIPHPSENKLHLRIETKSISAIDALREGLE 62
Query: 73 ELMLMCRHVRSTFAKAV 89
+L + H+ TF V
Sbjct: 63 QLQNLSDHILKTFEVVV 79
>gi|346971331|gb|EGY14783.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Verticillium
dahliae VdLs.17]
Length = 146
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
A+F E HTL NA+R+ + ++P V FC YSIPHPS+ +NIR+QT A L
Sbjct: 59 ASFEFKAEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEDLMNIRIQTYDGTAVSALSKGL 118
Query: 72 QELMLMCRHVRSTFAKAVDDF 92
++L +C + F + D F
Sbjct: 119 KDLQGLCDVMTDEFTRERDSF 139
>gi|225709232|gb|ACO10462.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus
rogercresseyi]
Length = 102
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVL 67
+S TF E+HTL NA+R + Q+P V FCGYSIPHP++ ++ +R+QT P ++ L
Sbjct: 19 ESCRTFIFKGENHTLGNALRSVILQNPDVLFCGYSIPHPAEDQMLLRIQTVSSVPTQDAL 78
Query: 68 KDSCQELMLMCRHVRSTFAKAV 89
+ ++L MC V S F A+
Sbjct: 79 RRGLEDLKDMCSVVSSKFNSAL 100
>gi|388580060|gb|EIM20378.1| RBP11-like subunits of RNA polymerase [Wallemia sebi CBS 633.66]
Length = 135
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
G D S ATF L EDHT+ NA+R+ L ++ V FCGYSIPHPS+ +V++R+Q +
Sbjct: 25 GYADDLSTATFCLFNEDHTIGNALRYILMKNGNVEFCGYSIPHPSEPKVHLRIQMYDNLS 84
Query: 63 AREVLKDSCQELMLMCRHVRSTF 85
A + L +L M + +++
Sbjct: 85 AIDALYKGLDDLESMFNEIEASY 107
>gi|321252347|ref|XP_003192374.1| DNA-directed RNA polymerase [Cryptococcus gattii WM276]
gi|317458842|gb|ADV20587.1| DNA-directed RNA polymerase, putative [Cryptococcus gattii WM276]
Length = 155
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDP 62
G D S TF+L +EDHTL NA+R+ + +DP V FCGY+ PHPS+ ++++R+Q
Sbjct: 32 GHEPDYSACTFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQS 91
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV--DDF 92
A + L+ + L + V +++ ++ DD+
Sbjct: 92 AVDCLRRALSNLRDLLNAVNDSYSSSLQNDDY 123
>gi|328863713|gb|EGG12812.1| hypothetical protein MELLADRAFT_70512 [Melampsora larici-populina
98AG31]
Length = 143
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 38/46 (82%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
ATF L +EDHTL N++R+ + ++P V FCGYS+PHPS+ ++N+R+Q
Sbjct: 29 ATFCLKDEDHTLGNSLRYIIMKNPDVEFCGYSLPHPSEPKLNLRIQ 74
>gi|58262798|ref|XP_568809.1| DNA-directed RNA polymerase [Cryptococcus neoformans var.
neoformans JEC21]
gi|134108506|ref|XP_777204.1| hypothetical protein CNBB4340 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259889|gb|EAL22557.1| hypothetical protein CNBB4340 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223459|gb|AAW41502.1| DNA-directed RNA polymerase, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 155
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
G D S TF+L +EDHTL NA+R+ + +DP V FCGY+ PHPS+ ++++R+Q
Sbjct: 32 GHEPDYSACTFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQ 85
>gi|224006698|ref|XP_002292309.1| small RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220971951|gb|EED90284.1| small RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 83
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP--AREVLKDS 70
TF L +EDHTL NA+R L D RV F GY +PHPS+ V++RVQT P A E LK++
Sbjct: 4 TFVLGDEDHTLGNALRHVLINDARVDFAGYCVPHPSEPVVHLRVQTNEKPLTAIEALKEA 63
Query: 71 CQELMLMC 78
C L C
Sbjct: 64 CSTLSKQC 71
>gi|295668907|ref|XP_002795002.1| predicted protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285695|gb|EEH41261.1| predicted protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 180
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 13/101 (12%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPR------------VTFCGYSIPHPSDARVNIRV 56
++ +F EDHTL NA+R+ + ++P+ V FCGY++PHPS+A++N+R+
Sbjct: 79 ETAVSFQFDREDHTLGNALRYVIMKNPKFLTYSSIIRSPEVEFCGYTMPHPSEAKMNLRI 138
Query: 57 QTT-GDPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
QT A VL+ +LM +C V TF +A + F S+
Sbjct: 139 QTYETTTAIAVLEKGFDDLMDLCDVVTETFTEAKNAFDGSK 179
>gi|323447577|gb|EGB03493.1| hypothetical protein AURANDRAFT_17769 [Aureococcus
anophagefferens]
Length = 74
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQ 72
TF +EDHTL NA+R L + F GYS+PHPS+ +N+R+QTTG PA V+ D
Sbjct: 1 TFVFRDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQTTGRPALAVMDDGLA 60
Query: 73 ELMLMC 78
+L +C
Sbjct: 61 QLSSIC 66
>gi|119196667|ref|XP_001248937.1| hypothetical protein CIMG_02708 [Coccidioides immitis RS]
Length = 99
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 40/52 (76%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
++ A+F EDHTL NA+R+ + ++P V FCGY++PHPS+ ++N+R+QT G
Sbjct: 42 ETAASFQFEGEDHTLGNALRYIIMKNPDVEFCGYTMPHPSETKMNLRIQTYG 93
>gi|294942414|ref|XP_002783512.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239896009|gb|EER15308.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 256
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDS 70
T+ L EDHTL N+VR+ L ++P+V F GYS+PHP++ VNIRVQT G A E + +
Sbjct: 9 GTYQLKNEDHTLGNSVRYVLAKNPKVDFAGYSVPHPNEPFVNIRVQTYPGMTADESMIWA 68
Query: 71 CQELMLM 77
+EL +M
Sbjct: 69 LEELDVM 75
>gi|389747581|gb|EIM88759.1| RBP11-like subunits of RNA polymerase [Stereum hirsutum FP-91666
SS1]
Length = 101
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDP 62
GA D S ATF + +E HT+ NA+R+ + ++P V FCGYS+PHPS+ + +R+Q G
Sbjct: 3 GAEPDLSAATFQIFDESHTMGNALRWIIMKNPNVEFCGYSVPHPSENFIQLRIQMYDGLS 62
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV 89
A L+ + +L + + ++ K++
Sbjct: 63 ALATLEKALYDLDALYATIEESYKKSL 89
>gi|393243778|gb|EJD51292.1| RBP11-like subunits of RNA polymerase [Auricularia delicata
TFB-10046 SS5]
Length = 110
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
GA D S AT+ L +E HT+ NA+R+ L ++P+V FCGYS PHPS+ +++R+Q
Sbjct: 13 GAEADLSAATYCLHDESHTIGNALRWMLMKNPKVEFCGYSAPHPSEPVIHLRIQ 66
>gi|256071190|ref|XP_002571924.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|353231403|emb|CCD77821.1| putative dna-directed RNA polymerase I [Schistosoma mansoni]
Length = 490
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D+S ATF+ EDHTL A+R+ + +D V+FCGY +PHP + +N +Q A + L
Sbjct: 399 DKSRATFTFFGEDHTLGLALRYCILRDESVSFCGYCVPHPLEDMINFDIQMKKGSAIDAL 458
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSEK 97
++ Q L +H++ TF A+ R++ K
Sbjct: 459 RNGLQCLRDCFQHMKHTFISAMKISRSTRK 488
>gi|397630084|gb|EJK69633.1| hypothetical protein THAOC_09087 [Thalassiosira oceanica]
Length = 145
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 53/104 (50%), Gaps = 17/104 (16%)
Query: 7 GDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD----- 61
G ++ TF L +EDHTL NA+R L D RV F GY +PHPS+ V+IRVQT +
Sbjct: 21 GPDTSRTFVLGDEDHTLGNALRHVLINDARVDFAGYCVPHPSEPVVHIRVQTNTNSKPND 80
Query: 62 ------------PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
A E LKD+C L C V + +A+ + R
Sbjct: 81 YEEEEKDGLQHLSAIEALKDACTTLSDQCDLVLAKLEEALPEVR 124
>gi|159117927|ref|XP_001709183.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Giardia lamblia ATCC 50803]
gi|157437298|gb|EDO81509.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Giardia lamblia ATCC 50803]
Length = 101
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 11 NATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDS 70
NATF + EDHTL N +R+ L +P V+F GYS+PHP++ ++N+R+Q+ A + L +
Sbjct: 5 NATFVIVNEDHTLGNCIRYCLTCNPAVSFAGYSVPHPAEPKLNLRIQSDTQSATDCLLQA 64
Query: 71 CQELMLMCRHVRSTFAKA 88
+ + +R A+A
Sbjct: 65 ADLMYAIASVLRQRLAEA 82
>gi|336375362|gb|EGO03698.1| hypothetical protein SERLA73DRAFT_130145 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388418|gb|EGO29562.1| hypothetical protein SERLADRAFT_378617 [Serpula lacrymans var.
lacrymans S7.9]
Length = 111
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
GA D S AT+ + +E HT+ NA+R+ L ++P+V FCGYS+PHPS+ + +R+Q
Sbjct: 13 GADQDLSAATYQIFDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENLIQLRIQ 66
>gi|308162692|gb|EFO65073.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Giardia lamblia P15]
Length = 100
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 50/84 (59%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
++ NATF + EDHTL N +R+ L +P V+F GYS+PHP++ ++N+R+Q+ A + L
Sbjct: 2 EERNATFVIVNEDHTLGNCIRYCLTCNPAVSFAGYSVPHPAEPKLNLRIQSDTQSATDCL 61
Query: 68 KDSCQELMLMCRHVRSTFAKAVDD 91
+ + + +R A+ D
Sbjct: 62 LQAADLMYNIASVLRRRLAEVCGD 85
>gi|393217041|gb|EJD02531.1| RBP11-like subunits of RNA polymerase [Fomitiporia mediterranea
MF3/22]
Length = 111
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
GA D S ATF L +E HT+ NA+R+ L ++P V FCGYS PHPS+ + +RVQ
Sbjct: 13 GATPDLSAATFRLNDESHTIGNALRWMLMKNPDVEFCGYSAPHPSENAIQVRVQ 66
>gi|384244757|gb|EIE18255.1| RBP11-like subunits of RNA polymerase [Coccomyxa subellipsoidea
C-169]
Length = 122
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
ATF+L EDHT+ N VR L +D VTF GY PHP D + I+VQT G + REV+ D+
Sbjct: 31 ATFTLQREDHTVGNLVRMQLLRDKEVTFAGYKFPHPLDYHILIKVQTKGKKSPREVMDDA 90
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSE 96
+L +R+ F +SE
Sbjct: 91 LTDLCDEFEDIRAKFQAEARRIHSSE 116
>gi|388854627|emb|CCF51784.1| related to DNA-directed RNA polymerase 13.3K chain [Ustilago
hordei]
Length = 149
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
ATF +EDHTL N +R + +P V FCGY +PHP + +V +++QT G + LK
Sbjct: 32 ATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSITPTDALKQG 91
Query: 71 CQELMLMCRHVRSTF 85
CQ+L+ ++ +
Sbjct: 92 CQKLIAQISSLKGAW 106
>gi|384486353|gb|EIE78533.1| hypothetical protein RO3G_03237 [Rhizopus delemar RA 99-880]
Length = 145
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDS 70
ATF + EDHTL N +R L +DPRV F GY +PHP + I+VQ+ G + LKD+
Sbjct: 31 ATFIVEREDHTLGNMLRGQLLKDPRVLFAGYKVPHPLEHNFIIKVQSVPGTSPGKALKDA 90
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSEKVQA 100
EL+ +++ F V RT E +A
Sbjct: 91 TSELISEINALKNKFDMEVIRHRTFEDAKA 120
>gi|302678017|ref|XP_003028691.1| hypothetical protein SCHCODRAFT_237070 [Schizophyllum commune
H4-8]
gi|300102380|gb|EFI93788.1| hypothetical protein SCHCODRAFT_237070 [Schizophyllum commune
H4-8]
Length = 112
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
GA + + AT+ + +E HTL NA+R+ + ++P V FCGYS PHPS+ +N+R+Q
Sbjct: 14 GAEANLAAATYQIYDESHTLGNALRWMIMKNPNVEFCGYSAPHPSENVINVRIQ 67
>gi|312070093|ref|XP_003137987.1| hypothetical protein LOAG_02401 [Loa loa]
gi|307766855|gb|EFO26089.1| hypothetical protein LOAG_02401 [Loa loa]
Length = 113
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREV 66
D SN T L EEDHT+ N+++ L + V FCGY++PHP + ++ IR+QT G PA +V
Sbjct: 22 DPSNLTVILYEEDHTIGNSLKHILCKMRDVEFCGYNVPHPLEDKILIRLQTKRGVPAADV 81
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFRTS 95
L +EL + +R F + ++ +
Sbjct: 82 LMKGFEELECIFGSIRQKFDSSYASYKAN 110
>gi|406861045|gb|EKD14101.1| DNA-directed RNA polymerase II [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 122
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 11 NATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKD 69
++ F+ +EDHTLAN +R L +DP V F GY IPHP A+ +RVQT G + +E L
Sbjct: 30 SSVFTFNKEDHTLANILRAHLVKDPHVLFAGYKIPHPLFAKFELRVQTDGTVSPKEALVK 89
Query: 70 SCQELMLMCRHVRSTFAK 87
C+EL+ + F K
Sbjct: 90 CCKELVAEMETLSREFTK 107
>gi|47211212|emb|CAF90169.1| unnamed protein product [Tetraodon nigroviridis]
Length = 117
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F+L +EDHTL N +R L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTLNKEDHTLGNIIRAQLMKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|66773140|ref|NP_001019571.1| polymerase (RNA) II (DNA directed) polypeptide J [Danio rerio]
gi|66267264|gb|AAH95123.1| Polymerase (RNA) II (DNA directed) polypeptide J [Danio rerio]
gi|182890238|gb|AAI65488.1| Polr2j protein [Danio rerio]
Length = 117
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F+L +EDHTL N +R L +DP+V F GY +PHP + +V IRVQTT D +E ++
Sbjct: 33 FTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKVVIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|348540573|ref|XP_003457762.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Oreochromis niloticus]
Length = 117
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F+L +EDHTL N +R L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTLNKEDHTLGNIIRAQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|410926916|ref|XP_003976914.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Takifugu rubripes]
Length = 117
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F+L +EDHTL N +R L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTLNKEDHTLGNIIRAQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|296089428|emb|CBI39247.3| unnamed protein product [Vitis vinifera]
Length = 372
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/41 (70%), Positives = 34/41 (82%)
Query: 31 LNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
L+ + RVTFC YSI HPSDARVN+RVQTT + AREVLK +C
Sbjct: 332 LSCNQRVTFCRYSISHPSDARVNMRVQTTSNSAREVLKHAC 372
>gi|308322417|gb|ADO28346.1| DNA-directed RNA polymerase II subunit rpb11-a [Ictalurus furcatus]
Length = 117
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQ 72
F+L +EDHTL N +R L +DP+V F GY +PHP + ++ IRVQTT D + +E ++
Sbjct: 33 FTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|317587873|ref|NP_001187715.1| DNA-directed RNA polymerase II subunit rpb11-a [Ictalurus
punctatus]
gi|225706696|gb|ACO09194.1| DNA-directed RNA polymerase II subunit J [Osmerus mordax]
gi|308323781|gb|ADO29026.1| DNA-directed RNA polymerase II subunit rpb11-a [Ictalurus
punctatus]
Length = 117
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F+L +EDHTL N +R L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|412986323|emb|CCO14749.1| predicted protein [Bathycoccus prasinos]
Length = 118
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKDSC 71
F L EDHTL N +R L+ DP V F GY PHP+D R+ I+V T G+ P R ++++
Sbjct: 33 FVLMREDHTLGNMLRMELHNDPNVVFAGYQHPHPTDHRILIKVHTNGETNPVR-AMREAN 91
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSEKV 98
Q L +++ + ++ R S +
Sbjct: 92 QRLTEQVESLKTQWESELESVRDSGAI 118
>gi|350537537|ref|NP_001232053.1| putative RNA polymerase I 16 kDa polypeptide [Taeniopygia
guttata]
gi|197127136|gb|ACH43634.1| putative RNA polymerase I 16 kDa polypeptide [Taeniopygia
guttata]
Length = 73
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 33 QDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAVDD 91
++P V FCGY I HPS++++N R+QT G PA E + +LM +C+HV +TF +++ +
Sbjct: 4 KNPDVEFCGYCITHPSESKINFRIQTRGALPAVEPFRKGLNDLMGVCQHVLNTFERSMKE 63
Query: 92 FRTSEK 97
FR ++
Sbjct: 64 FRAQKE 69
>gi|91090444|ref|XP_966925.1| PREDICTED: similar to DNA-directed RNA polymerase II 13.3 kDa
polypeptide [Tribolium castaneum]
gi|270013848|gb|EFA10296.1| hypothetical protein TcasGA2_TC012511 [Tribolium castaneum]
Length = 117
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N +R L +DP V F GY +PHP + + +R+QTT D + +E L +S
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYSPQEALMNS 90
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+L+ F +A+ +
Sbjct: 91 ITDLISELSLFEERFKEAIKE 111
>gi|268573450|ref|XP_002641702.1| Hypothetical protein CBG10036 [Caenorhabditis briggsae]
gi|74846694|sp|Q61IX2.1|RPAC2_CAEBR RecName: Full=Probable DNA-directed RNA polymerases I and III
subunit RPAC2; Short=RNA polymerases I and III subunit
AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
Length = 145
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREV 66
D SN T L EEDHT+ N+++ L++ V FCGY++PHP + ++ RVQT G A EV
Sbjct: 58 DPSNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEV 117
Query: 67 LKDSCQELMLMCRHVRSTFAKAVD 90
L + + + + +R F A +
Sbjct: 118 LVKAFESVEQVFSTIRGKFEAAYE 141
>gi|209737046|gb|ACI69392.1| DNA-directed RNA polymerase II subunit RPB11-a [Salmo salar]
gi|221219392|gb|ACM08357.1| DNA-directed RNA polymerase II subunit RPB11-a [Salmo salar]
gi|225704470|gb|ACO08081.1| DNA-directed RNA polymerase II subunit J [Oncorhynchus mykiss]
gi|225714848|gb|ACO13270.1| DNA-directed RNA polymerase II subunit RPB11-a [Esox lucius]
Length = 117
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F+L +EDHTL N +R L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTLNKEDHTLGNIIRQQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|118790581|ref|XP_318678.2| AGAP009644-PA [Anopheles gambiae str. PEST]
gi|116118014|gb|EAA14103.3| AGAP009644-PA [Anopheles gambiae str. PEST]
Length = 105
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
+S+ TF +E HTL N ++ + + P V FCGY++PHP++ +++ R+Q A +VL
Sbjct: 15 ESSRTFVFEDEGHTLGNVLKSIICKYPDVNFCGYTVPHPAENKMHFRIQAAKSVRAIDVL 74
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
+ ++L +C H TF AV + E
Sbjct: 75 RRGLEDLERVCDHTIDTFEAAVAKYHEKE 103
>gi|449675933|ref|XP_004208520.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Hydra
magnipapillata]
Length = 117
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-----V 66
A F++ +EDHTL N +R L +DP+V F GY +PHP + + N+R+QTT D + +
Sbjct: 31 AHFTVMKEDHTLGNLIRSQLLKDPQVIFAGYRVPHPLEHKFNVRIQTTPDYSPQEAFTSA 90
Query: 67 LKDSCQELMLMCRHVRSTFAKAVD 90
+ D E+ L+ +S + D
Sbjct: 91 ITDLLSEISLLEERFKSALKEKKD 114
>gi|225708058|gb|ACO09875.1| DNA-directed RNA polymerase II subunit J [Osmerus mordax]
Length = 117
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-----VLK 68
F+L++EDHTL N +R L +DP+V F GY +PHP + ++ IRVQTT D + + +
Sbjct: 33 FTLSKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAIT 92
Query: 69 DSCQELMLMCRHVR 82
D EL L+ R
Sbjct: 93 DLISELSLLEERFR 106
>gi|387914122|gb|AFK10670.1| polymerase (RNA) II (DNA directed) polypeptide J [Callorhinchus
milii]
Length = 117
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHTL N +R L +DP+V F GY +PHP + +V IRVQTT D +E ++
Sbjct: 33 FTINKEDHTLGNTIRSQLLKDPQVLFAGYKVPHPLEHKVVIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|432858786|ref|XP_004068938.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Oryzias latipes]
Length = 141
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F+L +EDHTL N +R L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 57 FTLNKEDHTLGNIIRAQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAIT 116
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 117 DLISELSLLEERFRVAIKD 135
>gi|443895093|dbj|GAC72439.1| RNA polymerase, subunit L [Pseudozyma antarctica T-34]
Length = 154
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
ATF +EDHTL N +R + +P V FCGY +PHP + +V +++QT G + LK
Sbjct: 32 ATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSITPTDALKQG 91
Query: 71 CQELMLMCRHVRSTF 85
C +L+ ++ +
Sbjct: 92 CTKLIAQISSLKGAW 106
>gi|308502351|ref|XP_003113360.1| hypothetical protein CRE_25564 [Caenorhabditis remanei]
gi|308265661|gb|EFP09614.1| hypothetical protein CRE_25564 [Caenorhabditis remanei]
Length = 139
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREV 66
D SN T L EEDHT+ N+++ L++ V FCGY++PHP + ++ RVQT G A EV
Sbjct: 52 DPSNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEV 111
Query: 67 LKDSCQELMLMCRHVRSTFAKAVD 90
L + + + + +R F ++ +
Sbjct: 112 LVKAFESVEQIFSTIRGKFEESYE 135
>gi|198423020|ref|XP_002125909.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide J [Ciona intestinalis]
Length = 117
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N +R L +DP+V F GY +PHP + + +RVQTTGD + +E ++
Sbjct: 31 AHFTVNKEDHTLGNILRTQLLKDPKVLFAGYKVPHPLEHKFILRVQTTGDYSPQEAFTNA 90
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+L+ + F V D
Sbjct: 91 ITDLISEISLLEERFKATVRD 111
>gi|342320371|gb|EGU12312.1| DNA-directed RNA polymerase II [Rhodotorula glutinis ATCC 204091]
Length = 130
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREV-LKDS 70
AT ++ +EDHTLAN +R L P V F GY +PHP + RV ++VQT G V ++++
Sbjct: 31 ATLTINKEDHTLANMLRSQLLLFPYVQFAGYKVPHPLEPRVVLKVQTDGSRTPLVAVQEA 90
Query: 71 CQELMLMCRHVRSTF 85
L+++ VRS F
Sbjct: 91 INTLLILLGKVRSQF 105
>gi|91081259|ref|XP_975661.1| PREDICTED: similar to GA10493-PA [Tribolium castaneum]
gi|270005223|gb|EFA01671.1| hypothetical protein TcasGA2_TC007243 [Tribolium castaneum]
Length = 105
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D+S TF L E HTL NA+R ++ P V FC Y++PHP + +++R+Q A + L
Sbjct: 13 DESCRTFILQGEGHTLGNALRCVISGYPDVEFCAYTVPHPMECSMHLRIQMRSGRAVDAL 72
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRTSEKV 98
K ++L + H+ F + +F + +++
Sbjct: 73 KRGLEDLAALSDHILDEFTREKQNFDSRDEL 103
>gi|19921456|ref|NP_609836.1| Rpb11 [Drosophila melanogaster]
gi|194758938|ref|XP_001961713.1| GF15107 [Drosophila ananassae]
gi|194880502|ref|XP_001974452.1| GG21750 [Drosophila erecta]
gi|195035867|ref|XP_001989393.1| GH10081 [Drosophila grimshawi]
gi|195114074|ref|XP_002001592.1| GI16585 [Drosophila mojavensis]
gi|195401096|ref|XP_002059150.1| GJ16235 [Drosophila virilis]
gi|195438427|ref|XP_002067138.1| GK24832 [Drosophila willistoni]
gi|195483889|ref|XP_002090472.1| GE13140 [Drosophila yakuba]
gi|195579746|ref|XP_002079722.1| GD21874 [Drosophila simulans]
gi|11387116|sp|Q9VJE4.1|RPB11_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II 13.3 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
II subunit J
gi|7298381|gb|AAF53606.1| Rpb11 [Drosophila melanogaster]
gi|190615410|gb|EDV30934.1| GF15107 [Drosophila ananassae]
gi|190657639|gb|EDV54852.1| GG21750 [Drosophila erecta]
gi|193905393|gb|EDW04260.1| GH10081 [Drosophila grimshawi]
gi|193912167|gb|EDW11034.1| GI16585 [Drosophila mojavensis]
gi|194156024|gb|EDW71208.1| GJ16235 [Drosophila virilis]
gi|194163223|gb|EDW78124.1| GK24832 [Drosophila willistoni]
gi|194176573|gb|EDW90184.1| GE13140 [Drosophila yakuba]
gi|194191731|gb|EDX05307.1| GD21874 [Drosophila simulans]
gi|343962697|gb|AEM72514.1| MIP32452p1 [Drosophila melanogaster]
Length = 117
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N +R L +DP V F GY +PHP + + IR+QTT D + +E ++
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNA 90
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+L+ F A+ +
Sbjct: 91 ITDLLAELSLFEERFKDAIKE 111
>gi|389609993|dbj|BAM18608.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide rpb11
[Papilio xuthus]
Length = 117
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP+V F GY IPHP + + +R+QTT D
Sbjct: 31 AIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSD 80
>gi|343427525|emb|CBQ71052.1| related to DNA-directed RNA polymerase 13.3K chain [Sporisorium
reilianum SRZ2]
Length = 147
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
ATF +EDHTL N +R + +P V FCGY +PHP + +V +++QT G + LK
Sbjct: 32 ATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSITPTDALKQG 91
Query: 71 CQELMLMCRHVRSTF 85
Q+L+ ++ +
Sbjct: 92 SQKLIAQISSLKGAW 106
>gi|443693124|gb|ELT94560.1| hypothetical protein CAPTEDRAFT_4697 [Capitella teleta]
Length = 130
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL NA+R L +DP+V F GY +PHP + + +R+QT + + +E ++
Sbjct: 31 AIFTVNKEDHTLGNALRTQLLKDPKVLFAGYKVPHPLENKFVLRIQTVAEYSPQEAFTNA 90
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSEK 97
+LM + F A F K
Sbjct: 91 ITDLMAEVSLLEENFKVAFKQFLKKTK 117
>gi|71011575|ref|XP_758471.1| hypothetical protein UM02324.1 [Ustilago maydis 521]
gi|46097891|gb|EAK83124.1| hypothetical protein UM02324.1 [Ustilago maydis 521]
Length = 145
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
ATF +EDHTL N +R + +P V FCGY +PHP + +V +++QT G + LK
Sbjct: 32 ATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSLTPTDALKQG 91
Query: 71 CQELMLMCRHVRSTF 85
Q+L+ ++ +
Sbjct: 92 SQKLIAQISSLKGAW 106
>gi|303271317|ref|XP_003055020.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462994|gb|EEH60272.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 152
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
TF + +EDHTL NAVR L++DP V F GY +PHPSD R+ I+V+
Sbjct: 31 GTFVVQKEDHTLGNAVRMQLHRDPEVVFSGYQVPHPSDNRIVIKVR 76
>gi|391324947|ref|XP_003737003.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Metaseiulus occidentalis]
Length = 117
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAR-EVLKDS 70
+ F++ +EDHTL N +R L +DP VTF GY PHP + ++ +RVQTT D E LK +
Sbjct: 31 SIFTINKEDHTLGNMIRAQLLKDPLVTFAGYKNPHPLEHKILLRVQTTPDSTPVEALKSA 90
Query: 71 CQELM 75
+LM
Sbjct: 91 INDLM 95
>gi|219119219|ref|XP_002180374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407847|gb|EEC47782.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP------- 62
S+ TF + +EDHTL NAVR L ++ + F GYS+PHPS+ V IRVQT
Sbjct: 1 SSRTFCIGDEDHTLGNAVRHVLIRNNSIGFAGYSVPHPSEPVVQIRVQTVAPAGSRGQQP 60
Query: 63 --AREVLKDSCQELMLMC 78
A LK +CQ L C
Sbjct: 61 PTATGALKTACQTLYDQC 78
>gi|156542813|ref|XP_001607873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Nasonia vitripennis]
Length = 117
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
A F++ +EDHTL N +R L +DP+V F GY +PHP + + IR+QTT D E ++
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKLPHPLEHKFVIRIQTTSDHTPHEAFMNA 90
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+L+ F +A+ +
Sbjct: 91 VTDLIAELSLFEERFKEAIKE 111
>gi|307188715|gb|EFN73365.1| DNA-directed RNA polymerase II subunit RPB11 [Camponotus
floridanus]
Length = 117
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP+V F GY +PHP + + IR+QTT D
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSD 80
>gi|157136940|ref|XP_001663871.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Aedes aegypti]
gi|108869812|gb|EAT34037.1| AAEL013700-PA [Aedes aegypti]
Length = 117
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N +R L +DP V F GY +PHP + + IR+QTT D + +E ++
Sbjct: 31 AIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVIRIQTTSDYSPQEAFMNA 90
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+L+ F +A D
Sbjct: 91 ITDLLSELSLFEERFKEAYKD 111
>gi|343962687|gb|AEM72509.1| MIP32352p1 [Drosophila melanogaster]
Length = 117
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N +R L +DP V F GY +PHP + + IR+QTT D + +E ++
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNA 90
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+L+ F A+ +
Sbjct: 91 ITDLLAELFLFEERFKDAIKE 111
>gi|17553746|ref|NP_499132.1| Protein RPAC-19 [Caenorhabditis elegans]
gi|464673|sp|P34476.1|RPAC2_CAEEL RecName: Full=Probable DNA-directed RNA polymerases I and III
subunit RPAC2; Short=RNA polymerases I and III subunit
AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
gi|3877824|emb|CAA80165.1| Protein RPAC-19 [Caenorhabditis elegans]
Length = 144
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREV 66
D SN T + EEDHT+ N+++ L++ V FCGY++PHP + ++ RVQT G A EV
Sbjct: 57 DPSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEV 116
Query: 67 LKDSCQELMLMCRHVRSTFAKAVD 90
L + + + + +R F ++ +
Sbjct: 117 LAKAFESVEQIFSTIRGKFEESYE 140
>gi|380023098|ref|XP_003695366.1| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Apis florea]
Length = 108
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQ 72
TF E +TL N++ ++Q+P V FC + HP++ + +R+Q A ++LK +
Sbjct: 18 TFVFMGEGYTLGNSLVSVISQNPNVEFCACFVNHPAEGNIYLRIQAKKGKAIDILKKGLE 77
Query: 73 ELMLMCRHVRSTFAKAVDDFRTSE 96
+ +C H +F A D F+TS+
Sbjct: 78 DFEKICDHTLESFNNAYDQFKTSK 101
>gi|2500634|sp|O08740.1|RPB11_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J; AltName:
Full=RNA polymerase II 13.3 kDa subunit; AltName:
Full=RPB14
gi|2081616|dbj|BAA19918.1| RNA polymerase II subuunit RPB14 [Mus musculus]
Length = 117
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRGAIKD 111
>gi|47187235|emb|CAG14790.1| unnamed protein product [Tetraodon nigroviridis]
Length = 60
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
D+ TF + +EDHTL N++R+ + ++ V FCGY+I HPS+ ++N R+QT G
Sbjct: 7 DEGCVTFVMHDEDHTLGNSLRYMVMKNEDVEFCGYTITHPSENKINFRIQTRG 59
>gi|83771710|dbj|BAE61840.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 152
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQD----------PRVTFCGYSIPHPSDARVNIRVQT 58
++ A+F E HTL NA+R+ + + V FCGY+IPHPS+ ++N+R+QT
Sbjct: 48 ETAASFQFEGEGHTLGNALRYAIMKKCVLLFIVSVVDIVEFCGYTIPHPSETKMNLRIQT 107
Query: 59 TGDP-AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
A E L+ LM +C V F + D F SE
Sbjct: 108 YDTTNAVEALEKGLDSLMDLCDVVTDKFTASRDAFNASE 146
>gi|240849101|ref|NP_001155573.1| DNA-directed RNA polymerase I 16 kDa polypeptide-like
[Acyrthosiphon pisum]
gi|239791842|dbj|BAH72334.1| ACYPI004493 [Acyrthosiphon pisum]
Length = 106
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDSC 71
TF +E HTL + + + L P FC YSI HPS+ ++ +R++ G ++ K
Sbjct: 19 TFVFEDEGHTLGSLLTYVLESFPETDFCAYSIRHPSENKIYLRLKVKNGHSVEDIFKRGF 78
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
QEL + HV+ TF KA+ + ++ +
Sbjct: 79 QELNQILNHVKKTFNKAISAYEETKATE 106
>gi|401885887|gb|EJT49968.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406697526|gb|EKD00785.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 160
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT--GDPAREVLKD 69
ATF L +DHTL N +R L DP V F GY +PHP + ++I++QT +PA + LK
Sbjct: 35 ATFVLRAQDHTLGNMLRAQLLLDPTVLFAGYKLPHPLENVISIKIQTDERSNPA-DALKR 93
Query: 70 SCQELMLMCRHVRSTF 85
+CQ+L+ ++ F
Sbjct: 94 ACQQLINQTLSIKKQF 109
>gi|402222352|gb|EJU02419.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 149
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG-DPAREVLKDS 70
AT + ++DHTLAN +R L ++P+V F GY PHP D +++QT G EVL+++
Sbjct: 31 ATIVVAKQDHTLANMIRGYLLKNPKVLFAGYKAPHPLDPHFILKIQTDGTSTPLEVLQET 90
Query: 71 CQELMLMCRHVRSTF 85
C L+ + + + F
Sbjct: 91 CNALIALVGKIDAKF 105
>gi|74177357|dbj|BAE34581.1| unnamed protein product [Mus musculus]
Length = 117
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFVGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|5453932|ref|NP_006225.1| DNA-directed RNA polymerase II subunit RPB11-a [Homo sapiens]
gi|82697397|ref|NP_001032560.1| DNA-directed RNA polymerase II subunit RPB11 [Bos taurus]
gi|157786902|ref|NP_001099391.1| polymerase (RNA) II (DNA directed) polypeptide J [Rattus
norvegicus]
gi|188219604|ref|NP_035423.2| DNA-directed RNA polymerase II subunit RPB11 [Mus musculus]
gi|350537195|ref|NP_001232039.1| putative DNA directed RNA polymerase II polypeptide J [Taeniopygia
guttata]
gi|126314418|ref|XP_001366429.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Monodelphis domestica]
gi|149755994|ref|XP_001504521.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Equus
caballus]
gi|291415582|ref|XP_002724029.1| PREDICTED: DNA directed RNA polymerase II polypeptide J-like
[Oryctolagus cuniculus]
gi|297680126|ref|XP_002817856.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Pongo
abelii]
gi|301780882|ref|XP_002925859.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Ailuropoda melanoleuca]
gi|326931232|ref|XP_003211737.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Meleagris gallopavo]
gi|335284198|ref|XP_003124442.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Sus scrofa]
gi|335284200|ref|XP_003354537.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 2 [Sus scrofa]
gi|344289757|ref|XP_003416607.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Loxodonta africana]
gi|345801173|ref|XP_003434782.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Canis
lupus familiaris]
gi|348568806|ref|XP_003470189.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Cavia
porcellus]
gi|403285780|ref|XP_003934189.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Saimiri
boliviensis boliviensis]
gi|410059453|ref|XP_003949275.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Pan
troglodytes]
gi|426254733|ref|XP_004021031.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Ovis
aries]
gi|1710661|sp|P52435.1|RPB11_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB11-a;
Short=RNA polymerase II subunit B11-a; Short=RPB11a;
AltName: Full=DNA-directed RNA polymerase II subunit
J-1; AltName: Full=RNA polymerase II 13.3 kDa subunit
gi|116256059|sp|Q32P79.1|RPB11_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|1220358|gb|AAD05361.1| RNA polymerase II [Homo sapiens]
gi|1730469|emb|CAA67075.1| RNA polymerase II subunit [Homo sapiens]
gi|4165267|emb|CAA57785.1| RNA polymerase II subunit [Homo sapiens]
gi|18848196|gb|AAH24165.1| Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Homo
sapiens]
gi|27781313|gb|AAH42939.1| Polymerase (RNA) II (DNA directed) polypeptide J [Mus musculus]
gi|41351295|gb|AAH65711.1| POLR2J protein [Homo sapiens]
gi|74177404|dbj|BAE34594.1| unnamed protein product [Mus musculus]
gi|79160201|gb|AAI08227.1| Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Bos
taurus]
gi|123992951|gb|ABM84077.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
[synthetic construct]
gi|123999873|gb|ABM87445.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
[synthetic construct]
gi|146218587|gb|AAI39903.1| Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Homo
sapiens]
gi|146327795|gb|AAI41831.1| POLR2J protein [Homo sapiens]
gi|148687376|gb|EDL19323.1| polymerase (RNA) II (DNA directed) polypeptide J [Mus musculus]
gi|149063001|gb|EDM13324.1| polymerase (RNA) II (DNA directed) polypeptide J (predicted)
[Rattus norvegicus]
gi|158254462|dbj|BAF83204.1| unnamed protein product [Homo sapiens]
gi|197129074|gb|ACH45572.1| putative DNA directed RNA polymerase II polypeptide J [Taeniopygia
guttata]
gi|197129075|gb|ACH45573.1| putative DNA directed RNA polymerase II polypeptide J [Taeniopygia
guttata]
gi|296472981|tpg|DAA15096.1| TPA: DNA-directed RNA polymerase II subunit RPB11 [Bos taurus]
gi|351698747|gb|EHB01666.1| DNA-directed RNA polymerase II subunit RPB11-a [Heterocephalus
glaber]
gi|380783319|gb|AFE63535.1| DNA-directed RNA polymerase II subunit RPB11-a [Macaca mulatta]
gi|384944160|gb|AFI35685.1| DNA-directed RNA polymerase II subunit RPB11-a [Macaca mulatta]
gi|410212832|gb|JAA03635.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Pan
troglodytes]
gi|410252394|gb|JAA14164.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Pan
troglodytes]
gi|410295166|gb|JAA26183.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Pan
troglodytes]
gi|431898190|gb|ELK06885.1| DNA-directed RNA polymerase II subunit RPB11-a [Pteropus alecto]
gi|440908432|gb|ELR58446.1| DNA-directed RNA polymerase II subunit RPB11-a [Bos grunniens
mutus]
gi|1589095|prf||2210288A RNA polymerase II
Length = 117
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|66530114|ref|XP_624001.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Apis
mellifera]
gi|380030239|ref|XP_003698760.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Apis florea]
gi|383860640|ref|XP_003705797.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Megachile rotundata]
gi|307206928|gb|EFN84774.1| DNA-directed RNA polymerase II subunit RPB11 [Harpegnathos
saltator]
Length = 117
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP+V F GY +PHP + + IR+QTT D
Sbjct: 31 AIFTVNKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSD 80
>gi|410059467|ref|XP_003949277.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-b1 isoform
3 [Pan troglodytes]
Length = 144
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 10 SNA-TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE--- 65
SNA F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D + +
Sbjct: 28 SNACLFTINKEDHTLGNIIKTQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 66 --VLKDSCQELMLMCRHVRS 83
+ D EL L+ RS
Sbjct: 88 TNAITDLISELSLLEERFRS 107
>gi|255080692|ref|XP_002503919.1| predicted protein [Micromonas sp. RCC299]
gi|226519186|gb|ACO65177.1| predicted protein [Micromonas sp. RCC299]
Length = 101
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
T+ + +EDHTL N VR L++DP V F GY +PHPSD R+ I+V T +
Sbjct: 31 GTYVVQKEDHTLGNIVRMQLHRDPNVVFAGYQVPHPSDNRIVIKVHTNKN 80
>gi|341877867|gb|EGT33802.1| hypothetical protein CAEBREN_16714 [Caenorhabditis brenneri]
Length = 138
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREV 66
D SN T + EEDHT+ N+++ L++ V FCGY++PHP + ++ RVQT G A EV
Sbjct: 51 DPSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTRDGINALEV 110
Query: 67 LKDSCQELMLMCRHVRSTFAKAVD 90
L + + + + +R F ++ +
Sbjct: 111 LMKAFESVEKIFSTIREKFEESYE 134
>gi|332030496|gb|EGI70184.1| DNA-directed RNA polymerase II subunit RPB11 [Acromyrmex
echinatior]
Length = 137
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP+V F GY +PHP + + IR+QTT D
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSD 80
>gi|340711267|ref|XP_003394200.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Bombus terrestris]
gi|350411736|ref|XP_003489439.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Bombus impatiens]
Length = 117
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP+V F GY +PHP + + IR+QTT D
Sbjct: 31 AIFTVNKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSD 80
>gi|390459035|ref|XP_002744022.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like,
partial [Callithrix jacchus]
Length = 114
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|340729491|ref|XP_003403034.1| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Bombus terrestris]
Length = 108
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQ 72
TF E +TL N++ ++Q+P V FC + HP++ + +R+Q A ++L+ Q
Sbjct: 18 TFVFMGEGYTLGNSLVAVISQNPDVEFCACFVNHPAEGNIYLRIQAKNGKAIDILRKGLQ 77
Query: 73 ELMLMCRHVRSTFAKAVDDFRTSE 96
+ +C H TF A + F+TS+
Sbjct: 78 DFEKICDHTLETFNNAYEQFKTSK 101
>gi|238231721|ref|NP_001154047.1| DNA-directed RNA polymerase II subunit J [Oncorhynchus mykiss]
gi|225703638|gb|ACO07665.1| DNA-directed RNA polymerase II subunit J [Oncorhynchus mykiss]
Length = 117
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-----VLK 68
F+L +EDHTL N ++ L +DP+V F GY +PHP + + IRVQTT D + + V+
Sbjct: 33 FTLNKEDHTLGNIIKQQLLKDPQVLFAGYKVPHPLEHKTVIRVQTTPDYSPQEAFTNVIT 92
Query: 69 DSCQELMLMCRHVR 82
D EL L+ R
Sbjct: 93 DLISELSLLEERFR 106
>gi|349915757|dbj|GAA27694.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Clonorchis
sinensis]
Length = 483
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D+ T++ EDHTL A+R+ + + TFCGY +PHP + +++ VQ A + L
Sbjct: 390 DKRRITYTFHGEDHTLGLALRYCILHSTKATFCGYCVPHPLEDKIHFDVQVKNGSAHDAL 449
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFR 93
++ L H++S F A+ FR
Sbjct: 450 REGLLCLRDCFIHIKSAFKAALQSFR 475
>gi|170037676|ref|XP_001846682.1| DNA-directed RNA polymerase II subunit J [Culex quinquefasciatus]
gi|167880966|gb|EDS44349.1| DNA-directed RNA polymerase II subunit J [Culex quinquefasciatus]
Length = 117
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N +R L +DP V F GY +PHP + + IR+QTT D + +E ++
Sbjct: 31 AIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVIRIQTTSDYSPQEAFMNA 90
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+L+ F +A D
Sbjct: 91 ITDLLSELSLFEERFREAYKD 111
>gi|110758571|ref|XP_001121462.1| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Apis mellifera]
Length = 108
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQ 72
TF E +TL N++ ++Q+P V FC + HP++ + +R+Q A ++LK +
Sbjct: 18 TFVFMGEGYTLGNSLVSVISQNPNVEFCACFVNHPAEGNIYLRIQAKRGKAIDILKKGLE 77
Query: 73 ELMLMCRHVRSTFAKAVDDFRTSE 96
+ +C H +F A D F+TS+
Sbjct: 78 DFEKICDHTLESFNNAYDQFKTSK 101
>gi|157107641|ref|XP_001649871.1| DNA-directed RNA polymerase I 16 kDa polypeptide [Aedes aegypti]
gi|157131975|ref|XP_001662388.1| DNA-directed RNA polymerase I 16 kDa polypeptide [Aedes aegypti]
gi|108868667|gb|EAT32892.1| AAEL014869-PA [Aedes aegypti]
gi|108871328|gb|EAT35553.1| AAEL012284-PA [Aedes aegypti]
Length = 103
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+++ TF +E HTL N ++ + + P V FCGY++PHP++ +++ R+Q +
Sbjct: 9 GDENSGEHSRTFVFEDEGHTLGNVLKSIICKYPDVNFCGYTVPHPAENKMHFRIQAARNV 68
Query: 63 -AREVLKDSCQELMLMCRHVRSTFAKAV 89
A ++LK ++L +C H TF AV
Sbjct: 69 RAIDILKRGLEDLERVCDHTIETFEGAV 96
>gi|350581483|ref|XP_003481048.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like,
partial [Sus scrofa]
Length = 99
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D + +E ++
Sbjct: 15 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 74
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 75 DLISELSLLEERFRVAIKD 93
>gi|336274887|ref|XP_003352197.1| hypothetical protein SMAC_02632 [Sordaria macrospora k-hell]
Length = 140
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E F SN + F + +EDHTLAN + L Q P V GY I HP+ V IR+QT
Sbjct: 28 IEEKVFTGMSNTSDFKILKEDHTLANLLAEHLKQAPHVLMAGYKIAHPNVPEVMIRIQTD 87
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAKAV 89
G RE L +C++L+ M + F K +
Sbjct: 88 GSITPREALVGACKQLVAMYGQLGREFQKEL 118
>gi|417408018|gb|JAA50583.1| Putative rna polymerase subunit l, partial [Desmodus rotundus]
Length = 138
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D + +E ++
Sbjct: 54 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 113
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 114 DLISELSLLEERFRVAIKD 132
>gi|407044128|gb|EKE42390.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Entamoeba nuttalli P19]
Length = 85
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAR---EVLKD 69
++++ EDHT AN +R + P CGYSIPHPSD +V R+QT + +V++D
Sbjct: 6 SYTIEGEDHTFANPLRHVIANLPDTDLCGYSIPHPSDTKVVFRIQTQKSSKKTPFDVMED 65
Query: 70 SCQELM 75
C+EL+
Sbjct: 66 GCKELI 71
>gi|342185977|emb|CCC95462.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
gi|343469253|emb|CCD17721.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
Length = 131
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 3 HGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
H G S AT + + EDHTL N +R+ L QDP VT GY+IPHP +A++ + VQ+
Sbjct: 38 HRLTGADSAATVTFSHEDHTLGNPLRYVLMQDPDVTSAGYAIPHPLEAKMQLHVQS 93
>gi|390350815|ref|XP_786311.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Strongylocentrotus purpuratus]
Length = 108
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N +R L +DP+V F GY +PHP + + +RVQTT D + +E ++
Sbjct: 22 AIFTVNKEDHTLGNILRAQLLKDPQVLFAGYKVPHPLEHKFVLRVQTTPDYSPQEAFTNA 81
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSE 96
+L+ + F AV D R +
Sbjct: 82 ITDLISEISLLEERFNAAVRDKREGQ 107
>gi|322785814|gb|EFZ12433.1| hypothetical protein SINV_02880 [Solenopsis invicta]
Length = 91
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP+V F GY +PHP + + IR+QTT D
Sbjct: 16 AIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSD 65
>gi|444715581|gb|ELW56446.1| DNA-directed RNA polymerase II subunit RPB11-a [Tupaia chinensis]
Length = 131
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 47 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 106
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 107 DLISELSLLEERFRVAIKD 125
>gi|168012942|ref|XP_001759160.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689473|gb|EDQ75844.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 137
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
ATF+L EDHT+ N +R L++DP V F GY +PHP RV +++QT + + +
Sbjct: 31 ATFTLQREDHTIGNILRMQLHRDPSVLFAGYKLPHPLQYRVVVKIQTNSQSSPMQAYNLA 90
Query: 71 CQELMLMCRHVRSTF 85
+L H+++TF
Sbjct: 91 ITDLTKELDHLKATF 105
>gi|82540957|ref|XP_724755.1| RNA polymerase L [Plasmodium yoelii yoelii 17XNL]
gi|23479513|gb|EAA16320.1| RNA polymerases L / 13 to 16 kDa subunit [Plasmodium yoelii
yoelii]
Length = 92
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
++ATF EDHTL N +R L Q + F GY++PHP+ A +N+R+QTTG
Sbjct: 14 THATFCFENEDHTLGNCLRCILLQKEGIEFAGYTVPHPTQAEINLRIQTTGS 65
>gi|380092277|emb|CCC10053.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 131
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E F SN + F + +EDHTLAN + L Q P V GY I HP+ V IR+QT
Sbjct: 19 IEEKVFTGMSNTSDFKILKEDHTLANLLAEHLKQAPHVLMAGYKIAHPNVPEVMIRIQTD 78
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAKAV 89
G RE L +C++L+ M + F K +
Sbjct: 79 GSITPREALVGACKQLVAMYGQLGREFQKEL 109
>gi|125985605|ref|XP_001356566.1| GA19897 [Drosophila pseudoobscura pseudoobscura]
gi|195147658|ref|XP_002014796.1| GL18757 [Drosophila persimilis]
gi|54644890|gb|EAL33630.1| GA19897 [Drosophila pseudoobscura pseudoobscura]
gi|194106749|gb|EDW28792.1| GL18757 [Drosophila persimilis]
Length = 117
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N +R L +DP V F GY +PHP + + IR+QTT + + +E ++
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTAEYSPQEAFMNA 90
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+L+ F A+ +
Sbjct: 91 ITDLLAELSLFEERFKDAIKE 111
>gi|116781365|gb|ABK22069.1| unknown [Picea sitchensis]
gi|116785114|gb|ABK23600.1| unknown [Picea sitchensis]
gi|116790373|gb|ABK25590.1| unknown [Picea sitchensis]
gi|224284720|gb|ACN40091.1| unknown [Picea sitchensis]
Length = 120
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
ATF + EDHT+ N VR L++DP V F GY +PHP ++ +R+QTT
Sbjct: 31 ATFVIEREDHTIGNIVRMQLHRDPNVLFAGYKLPHPLQYKILLRIQTTS 79
>gi|449703286|gb|EMD43765.1| DNA-directed RNA polymerase I and III subunit Rpc19, putative
[Entamoeba histolytica KU27]
Length = 85
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAR---EVLKD 69
++++ EDHT AN +R + P CGYSIPHPSD +V R+QT + +V++D
Sbjct: 6 SYTIEGEDHTFANPLRHVIANLPDTDLCGYSIPHPSDTKVVFRIQTQKSSNKTPFDVMED 65
Query: 70 SCQELM 75
C+EL+
Sbjct: 66 GCKELI 71
>gi|350411422|ref|XP_003489345.1| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Bombus impatiens]
Length = 108
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQ 72
TF E +TL N++ ++Q+P V FC + HP++ + +R+Q A ++L+ Q
Sbjct: 18 TFVFMGEGYTLGNSLVAVISQNPDVEFCACFVNHPAEGNIYLRIQAKNGKAIDILRKGLQ 77
Query: 73 ELMLMCRHVRSTFAKAVDDFRTS 95
+ +C H TF A + F+TS
Sbjct: 78 DFEKICDHTIETFNNAYEQFKTS 100
>gi|154414194|ref|XP_001580125.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121914339|gb|EAY19139.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 101
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S+ + T E +T+ NA+R T+ Q+P+V FCGY++PHP++ +V +RVQ D +++
Sbjct: 16 SSGSMLFTGETYTMGNALRQTILQNPKVNFCGYTVPHPAETKVALRVQADDDEKITDIVL 75
Query: 69 DSCQELMLMCRHVRSTFAKAVDDFR 93
+ C + + F A F+
Sbjct: 76 SGISDFKQWCNNTETEFDNAWSAFQ 100
>gi|440632021|gb|ELR01940.1| hypothetical protein GMDG_05113 [Geomyces destructans 20631-21]
Length = 189
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAREVL 67
+++ F++ +EDHTLAN +R L +DP VTF GY +PHP A + +RVQT G P V+
Sbjct: 91 NSSIFTILKEDHTLANLLRAHLLKDPHVTFAGYRVPHPLFATIELRVQTDGTLTPKEAVI 150
Query: 68 ---KDSCQELMLMCRHVRSTF 85
K EL + R F
Sbjct: 151 GIAKSLVAELAQLSREFTKEF 171
>gi|71756079|ref|XP_828954.1| DNA-dependent RNA polymerases [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70834340|gb|EAN79842.1| DNA-dependent RNA polymerases, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261334881|emb|CBH17875.1| DNA-dependent RNA polymerases, putative [Trypanosoma brucei
gambiense DAL972]
Length = 134
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLK 68
+S AT + + EDHTL N +R + +DP VT GY+IPHP +A++ + VQ++ + A E +
Sbjct: 44 ESAATVTFSHEDHTLGNPLRHVIMEDPSVTSAGYAIPHPLEAKMQLHVQSS-EYAVETVA 102
Query: 69 DSCQELMLMCRHVRSTFAKAVD 90
+ L +C +F V+
Sbjct: 103 KGLERLAAICDETLKSFNACVE 124
>gi|242003519|ref|XP_002422761.1| DNA-directed RNA polymerase II subunit J, putative [Pediculus
humanus corporis]
gi|212505604|gb|EEB10023.1| DNA-directed RNA polymerase II subunit J, putative [Pediculus
humanus corporis]
Length = 117
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
A F++ +EDHTL N +R L +DP V F GY +PHP + + +R+QTT D ++ L ++
Sbjct: 31 AIFTINKEDHTLGNMIRDQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDALMNA 90
Query: 71 CQELMLMCRHVRSTFAKAV 89
+L+ F +A+
Sbjct: 91 ITDLLSELSLFEERFKEAI 109
>gi|113931298|ref|NP_001039095.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Xenopus
(Silurana) tropicalis]
gi|89268974|emb|CAJ83522.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Xenopus
(Silurana) tropicalis]
Length = 117
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHT+ N ++ L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|347830775|emb|CCD46472.1| similar to DNA-directed RNA polymerase II subunit RPB11
[Botryotinia fuckeliana]
Length = 125
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
+++ F+ +EDHTLAN +R L +DP V F GY IPHP ++ +R+QT G+ +E L
Sbjct: 30 NSSVFTFNKEDHTLANMLRAHLLKDPHVIFSGYKIPHPLFSKFELRIQTDGEITPKEALV 89
Query: 69 DSCQELM 75
C+ L+
Sbjct: 90 ACCRNLV 96
>gi|339522065|gb|AEJ84197.1| DNA-directed RNA polymerase II subunit J-1 [Capra hircus]
Length = 117
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-----VLK 68
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D + + +
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPWEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 69 DSCQELMLM---CR 79
D EL L+ CR
Sbjct: 93 DLISELSLLEERCR 106
>gi|147902930|ref|NP_001088910.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Xenopus
laevis]
gi|56788744|gb|AAH88797.1| LOC496260 protein [Xenopus laevis]
Length = 117
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHT+ N ++ L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|297288087|ref|XP_001114645.2| PREDICTED: ras GTPase-activating protein 4 [Macaca mulatta]
Length = 642
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 558 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 617
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 618 DLISELSLLEERFRVAIKD 636
>gi|332867975|ref|XP_003339459.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-b1 isoform
1 [Pan troglodytes]
gi|332867977|ref|XP_003339460.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-b1 isoform
2 [Pan troglodytes]
Length = 116
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 10 SNA-TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE--- 65
SNA F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D + +
Sbjct: 28 SNACLFTINKEDHTLGNIIKTQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 66 --VLKDSCQELMLMCRHVRS 83
+ D EL L+ R+
Sbjct: 88 TNAITDLISELSLLEERFRT 107
>gi|405118462|gb|AFR93236.1| DNA-directed RNA polymerase II kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 162
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT--GDPAREVLKD 69
+T + +DHTL N +R L DP V F GY +PHP + + +++QT +PA E LK
Sbjct: 31 STIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQTDERSNPA-EALKR 89
Query: 70 SCQELMLMCRHVRSTFAK 87
+C EL+ H+++ F +
Sbjct: 90 ACHELIRQTVHIKAQFQQ 107
>gi|321251977|ref|XP_003192244.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide [Cryptococcus
gattii WM276]
gi|317458712|gb|ADV20457.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 162
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT--GDPAREVLKD 69
+T + +DHTL N +R L DP V F GY +PHP + + +++QT +PA E LK
Sbjct: 31 STIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQTDERSNPA-EALKR 89
Query: 70 SCQELMLMCRHVRSTFAK 87
+C EL+ H+++ F +
Sbjct: 90 ACHELIRQTVHIKAQFQQ 107
>gi|156054532|ref|XP_001593192.1| hypothetical protein SS1G_06114 [Sclerotinia sclerotiorum 1980]
gi|154703894|gb|EDO03633.1| hypothetical protein SS1G_06114 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 124
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
+++ F+ +EDHTLAN +R L +DP V F GY IPHP ++ +R+QT G+ +E L
Sbjct: 30 NSSIFTFNKEDHTLANMLRAHLLKDPHVIFSGYKIPHPLFSKFELRIQTDGEITPKEALV 89
Query: 69 DSCQELM 75
C+ L+
Sbjct: 90 ACCRNLV 96
>gi|58263494|ref|XP_569157.1| DNA-directed RNA polymerase ii 13.3 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134108320|ref|XP_777111.1| hypothetical protein CNBB3430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259796|gb|EAL22464.1| hypothetical protein CNBB3430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223807|gb|AAW41850.1| DNA-directed RNA polymerase ii 13.3 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 162
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT--GDPAREVLKD 69
+T + +DHTL N +R L DP V F GY +PHP + + +++QT +PA E LK
Sbjct: 31 STIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQTDERSNPA-EALKR 89
Query: 70 SCQELMLMCRHVRSTFAK 87
+C EL+ H+++ F +
Sbjct: 90 ACHELIRQTVHIKAQFQQ 107
>gi|357608007|gb|EHJ65777.1| putative DNA-directed RNA polymerase II 13.3 kDa polypeptide
[Danaus plexippus]
Length = 117
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDH+L N +R L +DP+V F GY +PHP + + +R+QTT D
Sbjct: 31 AIFTVNKEDHSLGNMIRHQLLKDPKVLFAGYKVPHPLEHKFVLRIQTTSD 80
>gi|156102573|ref|XP_001616979.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Plasmodium
vivax Sal-1]
gi|148805853|gb|EDL47252.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative
[Plasmodium vivax]
Length = 126
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQE 73
F++ EDHT+ N ++ L QDP+VTF Y PHP + I ++ G ++L D+
Sbjct: 38 FTIKLEDHTIGNLIKQALCQDPKVTFAAYRQPHPLQNTIEITIKPKGYAGVKLLSDNVNS 97
Query: 74 LMLMCRHVRSTFAKAVDDFR 93
L+ +R TF K V ++
Sbjct: 98 LLSDVSQLRETFKKKVQRYK 117
>gi|427786191|gb|JAA58547.1| Putative rna polymerases l [Rhipicephalus pulchellus]
Length = 117
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
A F++ +EDHTLAN +R L +DP V F GY +PHP + + +RVQTT D +E ++
Sbjct: 31 AIFTVNKEDHTLANMIRAQLLKDPCVLFAGYKVPHPLEHKFILRVQTTPDNTPQEAFTNA 90
Query: 71 CQELMLMCRHVRSTFAKAV 89
+L+ + F +AV
Sbjct: 91 ITDLISELSLLEERFKEAV 109
>gi|327287597|ref|XP_003228515.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Anolis carolinensis]
Length = 117
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY + HP + ++ I VQTT D + +E D+
Sbjct: 33 FTINKEDHTLGNVIKLQLLEDPQVLFAGYKVLHPLEHKIIIWVQTTPDYSPQEAFTDAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSILEERFGVAIKD 111
>gi|11595485|emb|CAC18368.1| RPB11a protein [Homo sapiens]
Length = 127
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-----VLK 68
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D + + +
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 69 DSCQELMLMCRHVR 82
D EL L+ R
Sbjct: 93 DLISELSLLEERFR 106
>gi|389585987|dbj|GAB68716.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 126
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQE 73
F++ EDHT+ N ++ L QDP+VTF Y PHP + I ++ G ++L D+
Sbjct: 38 FTIKLEDHTIGNLIKQALCQDPKVTFAAYRQPHPLQNTIEITIKPKGYAGVKLLSDNVNS 97
Query: 74 LMLMCRHVRSTFAKAVDDFR 93
L+ +R TF K V ++
Sbjct: 98 LLSDVSQLRETFKKKVQRYK 117
>gi|349804759|gb|AEQ17852.1| putative polymerase ii (dna directed) polypeptide [Hymenochirus
curtipes]
Length = 99
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHT+ N ++ L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 15 FTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 74
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + A+ D
Sbjct: 75 DLLSELSLIEERLKDAIKD 93
>gi|302501322|ref|XP_003012653.1| hypothetical protein ARB_00903 [Arthroderma benhamiae CBS 112371]
gi|291176213|gb|EFE32013.1| hypothetical protein ARB_00903 [Arthroderma benhamiae CBS 112371]
Length = 149
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 5 AFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PA 63
A G S A F+ +EDHTL N +R L Q+ V F GY IPHP +V +RVQT G
Sbjct: 45 ALGVPSTAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYRIPHPLVHKVLLRVQTDGQITP 104
Query: 64 REVLKDSCQELM 75
+E + +C +L+
Sbjct: 105 KEAVLAACHDLV 116
>gi|291000204|ref|XP_002682669.1| predicted protein [Naegleria gruberi]
gi|284096297|gb|EFC49925.1| predicted protein [Naegleria gruberi]
Length = 140
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
A F + +EDHTL N +R L++D RV F GY PHP + + I++QTT D R+ L +
Sbjct: 30 ANFIVNKEDHTLGNIIRMRLHEDKRVLFAGYRNPHPLEHHIEIKIQTTDDIEPRDALVGT 89
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTS 95
L+ +++ F A + +
Sbjct: 90 IDSLIRDFNYMKREFKHAAKEINNN 114
>gi|346470095|gb|AEO34892.1| hypothetical protein [Amblyomma maculatum]
gi|346470103|gb|AEO34896.1| hypothetical protein [Amblyomma maculatum]
Length = 117
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
A F++ +EDHTLAN +R L +DP V F GY +PHP + + +RVQTT D +E ++
Sbjct: 31 AIFTVNKEDHTLANMIRAQLLKDPCVLFAGYKVPHPLEHKFILRVQTTPDCTPQEAFTNA 90
Query: 71 CQELMLMCRHVRSTFAKAV 89
+L+ + F +AV
Sbjct: 91 ITDLISELSLLEERFKEAV 109
>gi|168000755|ref|XP_001753081.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695780|gb|EDQ82122.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 117
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
ATF++ EDHT+ N +R L++DP V F GY +PHP R+ +++QTT
Sbjct: 31 ATFTVEREDHTVGNVIRMQLHRDPSVLFAGYRLPHPLQYRLVVKIQTTS 79
>gi|224007319|ref|XP_002292619.1| probable dna-directed RNA polymerase II 13.6 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
gi|220971481|gb|EED89815.1| probable dna-directed RNA polymerase II 13.6 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
Length = 124
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 10 SNA-TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD---PARE 65
SNA TF+ +EDHT+AN +R L +DP V F GY PHP ++++++QTT PA E
Sbjct: 28 SNAGTFTFNKEDHTVANLLRMQLLRDPAVKFAGYMHPHPLIHKIHLKIQTTTSQVAPA-E 86
Query: 66 VLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAM 101
L + ++L H+ + A+D ++ + M
Sbjct: 87 TLSAAIEDLSNETDHLLTQVTDAIDKWKKENETGMM 122
>gi|410984536|ref|XP_003998584.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB11-like [Felis catus]
Length = 117
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKXPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|242247465|ref|NP_001156261.1| DNA-directed RNA polymerase II subunit RPB11-a [Acyrthosiphon
pisum]
gi|239799164|dbj|BAH70515.1| ACYPI008208 [Acyrthosiphon pisum]
Length = 117
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
A F++ +EDHTL N +R L +DP V F GY PHP + + +R+QTT D ++ L +S
Sbjct: 31 AIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKQPHPLEHKFELRIQTTSDYTPQDALTNS 90
Query: 71 CQELMLMCRHVRSTFAKAV 89
+L+ F +A+
Sbjct: 91 ITDLLAELSLFEERFKEAL 109
>gi|281337679|gb|EFB13263.1| hypothetical protein PANDA_015431 [Ailuropoda melanoleuca]
Length = 97
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D
Sbjct: 23 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPD 70
>gi|88687070|emb|CAJ43896.1| RNA polymerase I subunit RPC19 [Trypanosoma brucei brucei]
Length = 134
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLK 68
+S AT + + EDHTL N +R + +DP VT GY+IPHP +A++ + VQ++ + A E +
Sbjct: 44 ESAATVTFSHEDHTLGNPLRHVIMEDPSVTSAGYAIPHPLEAKMQLHVQSS-EYAVETVA 102
Query: 69 DSCQELMLMCRHVRSTFAKAVD 90
+ L +C F V+
Sbjct: 103 KGLERLAAICDETLKKFNACVE 124
>gi|398394339|ref|XP_003850628.1| hypothetical protein MYCGRDRAFT_105083 [Zymoseptoria tritici
IPO323]
gi|339470507|gb|EGP85604.1| hypothetical protein MYCGRDRAFT_105083 [Zymoseptoria tritici
IPO323]
Length = 121
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F+ +EDHTL N +R L + V F GY +PHP A+ +RVQT G+ + +E + +
Sbjct: 31 AMFTFNKEDHTLGNLLRAKLAKAEHVLFAGYQVPHPLFAQFKLRVQTDGEVSPKEAVVQA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C+EL+ + + F K
Sbjct: 91 CKELVAELQSLDQEFTK 107
>gi|332374220|gb|AEE62251.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP V F GY +PHP + + +R+QTT D
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDPSVLFAGYKLPHPLEHKFVLRIQTTSD 80
>gi|62739171|ref|NP_116581.3| DNA-directed RNA polymerase II subunit RPB11-b1 [Homo sapiens]
Length = 115
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D
Sbjct: 32 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPD 79
>gi|121711221|ref|XP_001273226.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus clavatus NRRL 1]
gi|119401377|gb|EAW11800.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus clavatus NRRL 1]
Length = 165
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S A F+ +EDHTL N +R L Q P V F GY IPHP + +R+QT G+ ++ L
Sbjct: 65 STAIFTFNKEDHTLGNLLRSRLLQSPHVLFAGYKIPHPLVPKFELRIQTDGEVTPKDALL 124
Query: 69 DSCQELM 75
+C +L+
Sbjct: 125 AACHDLV 131
>gi|449265930|gb|EMC77057.1| DNA-directed RNA polymerase II subunit RPB11-a, partial [Columba
livia]
Length = 90
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D
Sbjct: 16 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPD 63
>gi|62088376|dbj|BAD92635.1| MGC13098 protein variant [Homo sapiens]
Length = 180
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-----VLK 68
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D + + +
Sbjct: 54 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 113
Query: 69 DSCQELMLMCRHVR 82
D +EL L+ R
Sbjct: 114 DLIRELSLLEERFR 127
>gi|71754779|ref|XP_828304.1| DNA-directed RNA polymerase II [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833690|gb|EAN79192.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261334129|emb|CBH17123.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei
gambiense DAL972]
Length = 132
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
+++ F L EDHTLAN +R L+++P V GY +PHP+ RV +RVQT+ D
Sbjct: 38 NSSLFKLDREDHTLANLLRMRLHENPLVHIAGYRVPHPTQHRVELRVQTSSD 89
>gi|74725032|sp|Q9H1A7.1|RPB1C_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB11-b2;
Short=RNA polymerase II subunit B11-b2; Short=RPB11b2;
AltName: Full=DNA-directed RNA polymerase II subunit J3
gi|11595478|emb|CAC18331.1| RPB11b2alpha protein [Homo sapiens]
gi|30172701|gb|AAP22342.1| unknown [Homo sapiens]
gi|162318032|gb|AAI56864.1| Polymerase (RNA) II (DNA directed) polypeptide J3 [synthetic
construct]
Length = 115
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D
Sbjct: 32 FTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPD 79
>gi|196012022|ref|XP_002115874.1| hypothetical protein TRIADDRAFT_59743 [Trichoplax adhaerens]
gi|190581650|gb|EDV21726.1| hypothetical protein TRIADDRAFT_59743 [Trichoplax adhaerens]
Length = 116
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-----VLK 68
F++ +EDHTL N +R L +DP+V F GY +PHP + V IRVQTT + + E L
Sbjct: 33 FTIAKEDHTLGNIIRAQLLKDPQVIFAGYKVPHPLEYDVVIRVQTTSNYSPEEAFSNALT 92
Query: 69 DSCQELMLM 77
D EL ++
Sbjct: 93 DLISELNVL 101
>gi|339243709|ref|XP_003377780.1| DNA-directed RNA polymerase II subunit RPB11 [Trichinella spiralis]
gi|316973374|gb|EFV56975.1| DNA-directed RNA polymerase II subunit RPB11 [Trichinella spiralis]
Length = 114
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKDSC 71
F+L +EDHT+ + ++ L +P+V F G+ PHP + ++ +R+QTT D P R V+K +
Sbjct: 33 FTLNKEDHTIGHLIKDHLMSNPKVLFVGFRAPHPLEHKIYLRLQTTPDVHPIR-VMKLAL 91
Query: 72 QELMLMCRHV 81
+L+ MC HV
Sbjct: 92 SDLVTMCDHV 101
>gi|168277626|dbj|BAG10791.1| RPB11b2 protein [synthetic construct]
Length = 158
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-----VLK 68
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D + + +
Sbjct: 32 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 91
Query: 69 DSCQELMLMCRHVR 82
D +EL L+ R
Sbjct: 92 DLIRELSLLEERFR 105
>gi|332634984|ref|NP_001091084.2| DNA-directed RNA polymerase II subunit RPB11-b2 [Homo sapiens]
gi|74725005|sp|Q9GZM3.1|RPB1B_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB11-b1;
Short=RNA polymerase II subunit B11-b1; Short=RPB11b1;
AltName: Full=DNA-directed RNA polymerase II subunit J2
gi|11595474|emb|CAC18329.1| RPB11b1alpha protein [Homo sapiens]
gi|11595483|emb|CAC18332.1| RPB11b1alpha protein [Homo sapiens]
Length = 115
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D
Sbjct: 32 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPD 79
>gi|291232049|ref|XP_002735997.1| PREDICTED: DNA directed RNA polymerase II polypeptide J-like
[Saccoglossus kowalevskii]
Length = 110
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N +R L +DP+V F GY +PHP + + +RVQTT D + +E ++
Sbjct: 24 AMFTVNKEDHTLGNLLRSQLLKDPQVLFAGYKVPHPLEFKFVLRVQTTPDYSPQEAFTNA 83
Query: 71 CQELMLMCRHVRSTFAKAV 89
+L+ + F AV
Sbjct: 84 ITDLISEVSLLEERFKVAV 102
>gi|167525603|ref|XP_001747136.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774431|gb|EDQ88060.1| predicted protein [Monosiga brevicollis MX1]
Length = 119
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
TF + EDHT+ N + L +DPRV F GY +PHP + + +RV TT +E LK +
Sbjct: 31 GTFRMNREDHTVGNLLASQLAKDPRVLFAGYKVPHPLEHYILLRVHTTAQYSPKEALKQA 90
Query: 71 CQELMLMCRHVRSTF 85
+++ H++S+
Sbjct: 91 LHDVIYDVAHLQSSL 105
>gi|221060743|ref|XP_002261941.1| DNA-directed RNA polymerase 2 [Plasmodium knowlesi strain H]
gi|193811091|emb|CAQ41819.1| DNA-directed RNA polymerase 2, putative [Plasmodium knowlesi strain
H]
Length = 126
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQE 73
F++ EDHT+ N ++ L QDP+VTF Y PHP + I ++ G ++L D+
Sbjct: 38 FTIKLEDHTIGNLIKQALCQDPQVTFAAYRQPHPLQNTIEITIKPKGYAGVKLLSDNVNS 97
Query: 74 LMLMCRHVRSTFAKAVDDFR 93
L+ +R TF K V ++
Sbjct: 98 LLSDVSQLRETFKKKVQRYK 117
>gi|328771902|gb|EGF81941.1| hypothetical protein BATDEDRAFT_23695 [Batrachochytrium
dendrobatidis JAM81]
Length = 125
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKD 69
ATF++ +EDHTL N +R L ++P+V F GY +PHP + + +++QTT D PA +VL+
Sbjct: 32 ATFTVLKEDHTLGNILRMQLLKNPKVIFAGYKVPHPLEHQFILKIQTTPDTTPA-DVLQQ 90
Query: 70 SCQELM 75
L+
Sbjct: 91 EVANLI 96
>gi|355560539|gb|EHH17225.1| hypothetical protein EGK_13571 [Macaca mulatta]
gi|355747568|gb|EHH52065.1| hypothetical protein EGM_12433 [Macaca fascicularis]
Length = 158
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D
Sbjct: 32 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPD 79
>gi|19401711|gb|AAL87672.1|AF468111_1 DNA-directed RNA polymerase II subunit 11 [Homo sapiens]
Length = 158
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-----VLK 68
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D + + +
Sbjct: 32 FTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 91
Query: 69 DSCQELMLMCRHVR 82
D EL L+ R
Sbjct: 92 DLISELSLLEERFR 105
>gi|70948405|ref|XP_743717.1| DNA-directed RNA polymerase 2 [Plasmodium chabaudi chabaudi]
gi|74976313|sp|Q4XS21.1|RPB11_PLACH RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|56523351|emb|CAH80291.1| DNA-directed RNA polymerase 2, putative [Plasmodium chabaudi
chabaudi]
Length = 126
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQE 73
F++ EDHT+ N ++ +L QDP+VTF Y PHP + I ++ G ++L D+
Sbjct: 38 FTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNAIEITIRPKGYAGVKLLSDNVHS 97
Query: 74 LMLMCRHVRSTFAKAVDDFR 93
++ +R TFA V ++
Sbjct: 98 ILNQVSTLRETFANRVQKYK 117
>gi|71650711|ref|XP_814048.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878987|gb|EAN92197.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 133
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
+++ F L +EDHTLAN +R L++D V GY +PHP+ RV +RVQT+ D
Sbjct: 39 NSSLFKLDKEDHTLANLLRMKLHEDALVHIAGYRVPHPTQHRVELRVQTSSD 90
>gi|33359678|gb|AAP97076.1| RNA polymerase II subunit [Branchiostoma belcheri]
Length = 135
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP+V F GY +PHP + + +RVQTT D
Sbjct: 31 AIFTVNKEDHTLGNLLRAQLLKDPQVIFAGYKVPHPLEHKFVLRVQTTPD 80
>gi|71668504|ref|XP_821132.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886501|gb|EAN99281.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 133
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
+++ F L +EDHTLAN +R L++D V GY +PHP+ RV +RVQT+ D
Sbjct: 39 NSSLFKLDKEDHTLANLLRMKLHEDALVHIAGYRVPHPTQHRVELRVQTSSD 90
>gi|170595751|ref|XP_001902505.1| Probable DNA-directed RNA polymerases I/III 16 kDa polypeptide,
putative [Brugia malayi]
gi|158589782|gb|EDP28642.1| Probable DNA-directed RNA polymerases I/III 16 kDa polypeptide,
putative [Brugia malayi]
Length = 113
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 7 GDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPARE 65
D SN T L EEDHT+ N+++ L + V FCGY++PHP + ++ IR+QT G A
Sbjct: 21 SDPSNLTVILYEEDHTIGNSLKHVLCKMRDVEFCGYNVPHPLEDKILIRLQTKRGVSAAS 80
Query: 66 VLKDSCQELMLMCRHVRSTF 85
+L +EL + +R F
Sbjct: 81 MLMKGFEELECIFASIRQKF 100
>gi|745556|prf||2016335A RNA polymerase II:SUBUNIT=14kD
Length = 113
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D
Sbjct: 32 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPD 79
>gi|268533032|ref|XP_002631644.1| C. briggsae CBR-RPB-11 protein [Caenorhabditis briggsae]
gi|74845978|sp|Q60SM4.1|RPB11_CAEBR RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
Length = 122
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-----GDPAREV 66
A F++ +EDHTL N ++ L +DP V F GY PHP + ++ +RVQTT D
Sbjct: 30 AIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNATTPADALTTA 89
Query: 67 LKDSCQELMLMCRHVRSTFAK 87
+ D EL L+ + S K
Sbjct: 90 ITDLVGELSLLEHRIDSAIKK 110
>gi|426357372|ref|XP_004046017.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Gorilla gorilla gorilla]
Length = 171
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D
Sbjct: 45 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPD 92
>gi|149243898|ref|XP_001526543.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448937|gb|EDK43193.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 121
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
A + EDHTLAN +R L +DPRV F Y + HP A +R+QT D +E LK++
Sbjct: 31 AIIKIEREDHTLANLLRAQLLKDPRVIFAAYKVEHPLFANFVLRIQTEEDYTPKEALKNA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C L+ ++S F++
Sbjct: 91 CNMLINELGAIKSKFSE 107
>gi|443718702|gb|ELU09209.1| hypothetical protein CAPTEDRAFT_31867, partial [Capitella teleta]
Length = 51
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 35 PRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELMLMCRHVRSTF 85
P V FCGYS+PHPS+ ++N+R+QT G A VL+ +L + +HV TF
Sbjct: 1 PDVEFCGYSVPHPSETKINLRIQTKGPSAMSVLEKGLNDLKKVSKHVLDTF 51
>gi|170029538|ref|XP_001842649.1| DNA-directed RNA polymerase I subunit D [Culex quinquefasciatus]
gi|167863233|gb|EDS26616.1| DNA-directed RNA polymerase I subunit D [Culex quinquefasciatus]
Length = 104
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP-AREVL 67
+S+ TF +E HTL N ++ + + V FCGY++PHP++ +++ R+Q + A +VL
Sbjct: 15 ESSRTFVFEDEGHTLGNVLKSIICKYSDVNFCGYTVPHPAENKMHFRIQAARNVRAIDVL 74
Query: 68 KDSCQELMLMCRHVRSTFAKAVD 90
+ ++L +C H TF A++
Sbjct: 75 RRGLEDLERVCDHTIETFEAAIN 97
>gi|340377747|ref|XP_003387390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Amphimedon queenslandica]
Length = 117
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N + L DP+V F GY +PHP + + +R+QTT D + +E L ++
Sbjct: 31 AIFTVFKEDHTLGNLLMHQLLNDPQVLFSGYKVPHPLEHKFVLRIQTTADYSPQEALSNA 90
Query: 71 CQELMLMCRHVRSTFAKA 88
+L+ + + F A
Sbjct: 91 LTDLISEVTKIETRFKDA 108
>gi|302677665|ref|XP_003028515.1| hypothetical protein SCHCODRAFT_83062 [Schizophyllum commune H4-8]
gi|300102204|gb|EFI93612.1| hypothetical protein SCHCODRAFT_83062 [Schizophyllum commune H4-8]
Length = 149
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREV-LKDSC 71
T + ++DHTLAN +R L +P+V F GY +PHP + +R+QT G E+ L+ +C
Sbjct: 32 TVKIVKQDHTLANMLRSQLLNNPQVLFAGYKVPHPLEPYFLLRIQTDGTITPEIALEQAC 91
Query: 72 QELMLMCRHVRSTF 85
+L+ + +++ F
Sbjct: 92 TQLLAVVSVLKAKF 105
>gi|402588033|gb|EJW81967.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein,
partial [Wuchereria bancrofti]
Length = 110
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREV 66
D SN T L EEDHT+ N+++ L + V FCGY++PHP + ++ IR+QT G A
Sbjct: 19 DPSNLTVILYEEDHTIGNSLKHVLCKMRDVEFCGYNVPHPLEDKILIRLQTKRGVSAANT 78
Query: 67 LKDSCQELMLMCRHVRSTFAKA 88
L +EL + +R F +
Sbjct: 79 LMKGFEELESIFASIRQKFGSS 100
>gi|313229045|emb|CBY18197.1| unnamed protein product [Oikopleura dioica]
Length = 119
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
F+L +EDHTL N ++ L +DP+V F GY PHP + +V IRVQTT D
Sbjct: 33 FTLNKEDHTLGNILKTQLLRDPKVLFAGYKNPHPLENKVIIRVQTTKD 80
>gi|290561711|gb|ADD38255.1| DNA-directed RNA polymerase II subunit RPB11 [Lepeophtheirus
salmonis]
Length = 117
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
+ F++ +EDHTL N VR L +DP V F GY PHP + ++ +R+QTT D + L ++
Sbjct: 31 SIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNA 90
Query: 71 CQELMLMCRHVRSTFAKAV 89
+L+ +F AV
Sbjct: 91 ITDLISELSLFEESFKDAV 109
>gi|12718487|emb|CAC28816.1| related to DNA-directed RNA polymerase 13.3K chain [Neurospora
crassa]
Length = 133
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E F SN + F + +EDHTL N + L Q P V GY I HP+ + IR+QT
Sbjct: 19 IEEKVFTGMSNTSDFKILKEDHTLGNLLAEHLKQAPHVLMAGYKIAHPNVPELFIRIQTD 78
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAKAV 89
G RE L +C++L+ M + F K +
Sbjct: 79 GSITPREALVGACKQLVAMYGQLGREFQKEL 109
>gi|58393315|ref|XP_319985.2| AGAP009209-PA [Anopheles gambiae str. PEST]
gi|74839219|sp|Q7PVQ9.2|RPB11_ANOGA RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|55235548|gb|EAA14713.2| AGAP009209-PA [Anopheles gambiae str. PEST]
Length = 117
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP V F GY +PHP + + +R+QTT +
Sbjct: 31 AIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSE 80
>gi|164426902|ref|XP_961128.2| hypothetical protein NCU03782 [Neurospora crassa OR74A]
gi|157071522|gb|EAA31892.2| predicted protein [Neurospora crassa OR74A]
Length = 141
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E F SN + F + +EDHTL N + L Q P V GY I HP+ + IR+QT
Sbjct: 27 IEEKVFTGMSNTSDFKILKEDHTLGNLLAEHLKQAPHVLMAGYKIAHPNVPELFIRIQTD 86
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAKAV 89
G RE L +C++L+ M + F K +
Sbjct: 87 GSITPREALVGACKQLVAMYGQLGREFQKEL 117
>gi|302783907|ref|XP_002973726.1| hypothetical protein SELMODRAFT_173532 [Selaginella moellendorffii]
gi|302788013|ref|XP_002975776.1| hypothetical protein SELMODRAFT_150734 [Selaginella moellendorffii]
gi|300156777|gb|EFJ23405.1| hypothetical protein SELMODRAFT_150734 [Selaginella moellendorffii]
gi|300158764|gb|EFJ25386.1| hypothetical protein SELMODRAFT_173532 [Selaginella moellendorffii]
Length = 117
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-----REV 66
F++ EDHT+ N VR L++DP V F GY +PHP ++ ++VQTT +
Sbjct: 31 GAFTIQREDHTVGNVVRMQLHRDPNVLFAGYKLPHPLQYKIIVKVQTTSQSSPIQAYNLA 90
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDF 92
L D +EL + R S A+ D+
Sbjct: 91 LSDLDKELEHLKRAFESEVAQRQTDY 116
>gi|336472984|gb|EGO61144.1| hypothetical protein NEUTE1DRAFT_58240 [Neurospora tetrasperma FGSC
2508]
gi|350293767|gb|EGZ74852.1| RBP11-like subunits of RNA polymerase [Neurospora tetrasperma FGSC
2509]
Length = 141
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E F SN + F + +EDHTL N + L Q P V GY I HP+ + IR+QT
Sbjct: 27 IEEKVFTGMSNTSDFKILKEDHTLGNLLAEHLKQAPHVLMAGYKIAHPNVPELFIRIQTD 86
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAKAV 89
G RE L +C++L+ M + F K +
Sbjct: 87 GSITPREALVGACKQLVAMYGQLGREFQKEL 117
>gi|242075042|ref|XP_002447457.1| hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
gi|241938640|gb|EES11785.1| hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
Length = 117
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
A+F++ EDHT+ N VR L++DP V F GY +PHP ++ +R+ TT
Sbjct: 31 ASFTIEREDHTIGNIVRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTS 79
>gi|217070988|gb|ACJ83854.1| unknown [Medicago truncatula]
gi|388519401|gb|AFK47762.1| unknown [Medicago truncatula]
Length = 116
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
A+F++ EDHT+ N +R L++DP V F GY +PHP ++ IR+ TT
Sbjct: 31 ASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTT 78
>gi|324533414|gb|ADY49303.1| DNA-directed RNA polymerase II subunit RPB11 [Ascaris suum]
Length = 117
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N ++ L +DP+V F GY PHP + + +R+QTT D + + L +
Sbjct: 31 AIFTINKEDHTLGNLIKHQLLKDPQVLFAGYKNPHPLEHKFILRIQTTSDTSPSDALTSA 90
Query: 71 CQELMLMCRHVRSTFAKAVDDFR 93
+LM F A+ + R
Sbjct: 91 ITDLMAELSLFEERFRDAIKERR 113
>gi|240271228|gb|ACS53479.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271236|gb|ACS53483.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
Length = 84
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP V F GY +PHP + + +R+QTT +
Sbjct: 18 AIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSE 67
>gi|71416664|ref|XP_810336.1| DNA-dependent RNA polymerases [Trypanosoma cruzi strain CL Brener]
gi|70874850|gb|EAN88485.1| DNA-dependent RNA polymerases, putative [Trypanosoma cruzi]
Length = 134
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLK 68
+S T + + EDHTL N +R L Q+ VT GY+IPHP +A++ + VQ+T D A E +
Sbjct: 44 ESTVTIAFSHEDHTLGNPLRHVLMQNREVTSAGYAIPHPLEAKMLLHVQST-DYAVEAVA 102
Query: 69 DSCQELMLMCRHVRSTFAKAVDDFR 93
+ + L +C +F + R
Sbjct: 103 EGLERLASICDETLQSFEDCMHRMR 127
>gi|409048064|gb|EKM57542.1| hypothetical protein PHACADRAFT_251231 [Phanerochaete carnosa
HHB-10118-sp]
Length = 141
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSC 71
TF + +EDHTL N +R L +D R F GY +PHP ++VQ+ G A +++ D+C
Sbjct: 32 TFKIVKEDHTLGNLLRAELLKDSRCLFAGYKVPHPLHPYFLLKVQSDGSVTASKLVTDAC 91
Query: 72 QELMLMCRHVRSTFAK 87
Q L+ V + F +
Sbjct: 92 QSLLEKLASVEAKFKR 107
>gi|240271196|gb|ACS53463.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271198|gb|ACS53464.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271200|gb|ACS53465.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271202|gb|ACS53466.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271206|gb|ACS53468.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271208|gb|ACS53469.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271210|gb|ACS53470.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271212|gb|ACS53471.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271214|gb|ACS53472.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271216|gb|ACS53473.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271218|gb|ACS53474.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271220|gb|ACS53475.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271222|gb|ACS53476.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271224|gb|ACS53477.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271226|gb|ACS53478.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271230|gb|ACS53480.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271232|gb|ACS53481.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271234|gb|ACS53482.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271238|gb|ACS53484.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271240|gb|ACS53485.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271242|gb|ACS53486.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271246|gb|ACS53488.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271248|gb|ACS53489.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271250|gb|ACS53490.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271252|gb|ACS53491.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271254|gb|ACS53492.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271256|gb|ACS53493.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271262|gb|ACS53496.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271264|gb|ACS53497.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271268|gb|ACS53499.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271274|gb|ACS53502.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271276|gb|ACS53503.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271278|gb|ACS53504.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271290|gb|ACS53510.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271292|gb|ACS53511.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271294|gb|ACS53512.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271298|gb|ACS53514.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271300|gb|ACS53515.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271302|gb|ACS53516.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271304|gb|ACS53517.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271306|gb|ACS53518.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271310|gb|ACS53520.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271312|gb|ACS53521.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271314|gb|ACS53522.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271316|gb|ACS53523.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
merus]
gi|240271318|gb|ACS53524.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
quadriannulatus]
gi|240271320|gb|ACS53525.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
vagus]
gi|240271322|gb|ACS53526.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271324|gb|ACS53527.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271326|gb|ACS53528.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271328|gb|ACS53529.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271330|gb|ACS53530.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271332|gb|ACS53531.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271334|gb|ACS53532.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271336|gb|ACS53533.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
Length = 85
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP V F GY +PHP + + +R+QTT +
Sbjct: 19 AIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSE 68
>gi|145348497|ref|XP_001418684.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578914|gb|ABO96977.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAR-EVL 67
++ TF L EDHT+ N +R L+++P V F GY PHP+D R+ ++V T + + L
Sbjct: 28 ENAGTFVLQREDHTIGNLLRMELHKNPDVVFAGYKNPHPTDHRIVLKVHTNANTTPVQAL 87
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFR 93
+D+ L + FA ++ R
Sbjct: 88 RDAVTNLRAEVGDLSQQFADEINALR 113
>gi|71421443|ref|XP_811802.1| DNA-directed RNA polymerase I/III subunit [Trypanosoma cruzi strain
CL Brener]
gi|70876509|gb|EAN89951.1| DNA-directed RNA polymerase I/III subunit, putative [Trypanosoma
cruzi]
Length = 134
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLK 68
+S T + + EDHTL N +R L Q+ VT GY+IPHP +A++ + VQ+T D A E +
Sbjct: 44 ESTVTIAFSHEDHTLGNPLRHVLMQNREVTSAGYAIPHPLEAKMLLHVQST-DYAVEAVA 102
Query: 69 DSCQELMLMCRHVRSTFAKAVDDFR 93
+ + L +C +F + R
Sbjct: 103 EGLERLASICDETLQSFEDCMHRMR 127
>gi|345567881|gb|EGX50783.1| hypothetical protein AOL_s00054g869 [Arthrobotrys oligospora ATCC
24927]
Length = 192
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKDS 70
TF+ +EDHTL N +R L +DP+V F GY +PHP +RVQTT + P V+K +
Sbjct: 102 TFTFNKEDHTLGNLLRSQLLKDPKVLFAGYKVPHPLFPSFELRVQTTDETNPRAAVIK-A 160
Query: 71 CQELMLMCRHVRSTFAK 87
Q+L+ R+ F +
Sbjct: 161 AQDLIKDLTIFRNNFTR 177
>gi|241566022|ref|XP_002402072.1| RNA polymerases L, putative [Ixodes scapularis]
gi|215499963|gb|EEC09457.1| RNA polymerases L, putative [Ixodes scapularis]
gi|442757575|gb|JAA70946.1| Putative rna polymerase subunit l [Ixodes ricinus]
Length = 117
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP V F GY +PHP + + +RVQTT D
Sbjct: 31 AIFTVNKEDHTLGNMIRAQLLKDPCVLFAGYKVPHPLEHKFILRVQTTPD 80
>gi|403416590|emb|CCM03290.1| predicted protein [Fibroporia radiculosa]
Length = 142
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
AT + ++DHTL N +R L P+V F GY +PHP I++QT G E+L+ +
Sbjct: 31 ATIKVMKQDHTLGNLIRAQLLSMPQVLFAGYKVPHPLQPHFLIKIQTDGTATPTEILEQA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C +L+ M + + F +
Sbjct: 91 CNKLIQMMVSLEAKFKR 107
>gi|126137858|ref|XP_001385452.1| RNA polymerase II core subunit [Scheffersomyces stipitis CBS 6054]
gi|126092730|gb|ABN67423.1| RNA polymerase II core subunit [Scheffersomyces stipitis CBS 6054]
Length = 122
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A + EDHTLAN +R L +DPRV F Y + HP A +R+QT D + RE LK++
Sbjct: 31 AIIKIEREDHTLANLLRAQLLKDPRVLFAAYKVEHPLFANFVLRIQTEDDYSPREALKNA 90
Query: 71 CQELMLMCRHVRSTF 85
C L+ +++ F
Sbjct: 91 CSGLISELDVIKNRF 105
>gi|340059083|emb|CCC53456.1| putative DNA-dependent RNA polymerases [Trypanosoma vivax Y486]
Length = 135
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLK 68
+S AT + + EDHTL N++R L Q+ +VT GY+IPHP + ++ + VQ+T +V+
Sbjct: 44 ESAATVAFSHEDHTLGNSLRHVLMQNAQVTSAGYAIPHPLEEKMLLHVQSTA-YVVDVVA 102
Query: 69 DSCQELMLMCRHVRSTFAKAVD 90
+ ++L +C + +F ++
Sbjct: 103 EGLEQLASICDYTLKSFDNCIN 124
>gi|124512838|ref|XP_001349775.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
gi|74843039|sp|Q8IER7.1|RPB11_PLAF7 RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|23615192|emb|CAD52182.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
Length = 126
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQE 73
F + EDHT+ N ++ L QDP+V F Y PHP + I ++ G ++L D+
Sbjct: 38 FVIKLEDHTIGNLIKIQLCQDPKVLFAAYRQPHPLQNAIEITIKPKGYAGVKLLSDNVNN 97
Query: 74 LMLMCRHVRSTFAKAVDDFRTS 95
++ ++ FAK + ++ S
Sbjct: 98 ILSQVATLKENFAKKIQKYKES 119
>gi|240271258|gb|ACS53494.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
Length = 79
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP V F GY +PHP + + +R+QTT +
Sbjct: 13 AIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSE 62
>gi|403223937|dbj|BAM42067.1| RNA polymerases I and III subunit [Theileria orientalis strain
Shintoku]
Length = 981
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 11 NATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
N TFS+ EDHTL N +R L + V F GYS+PHP + +N+R+QTT
Sbjct: 10 NITFSIENEDHTLGNTLRAVLVERDDVIFAGYSVPHPMEPEMNVRIQTT 58
>gi|240271204|gb|ACS53467.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271244|gb|ACS53487.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271260|gb|ACS53495.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271266|gb|ACS53498.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271270|gb|ACS53500.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271272|gb|ACS53501.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271280|gb|ACS53505.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271282|gb|ACS53506.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271284|gb|ACS53507.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271286|gb|ACS53508.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271288|gb|ACS53509.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271296|gb|ACS53513.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271308|gb|ACS53519.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
Length = 79
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP V F GY +PHP + + +R+QTT +
Sbjct: 13 AIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSE 62
>gi|393911983|gb|EFO17249.2| DNA-directed RNA polymerase II subunit RPB11-a [Loa loa]
Length = 117
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKD 69
A F++ +EDHT+ N ++ L +DP+V F GY PHP + + +RVQTT D PA + L
Sbjct: 31 AIFTVNKEDHTIGNLLKHQLLKDPQVLFAGYKCPHPLEHKFILRVQTTSDTTPA-DALTS 89
Query: 70 SCQELMLMCRHVRSTFAKAVDDFR 93
+ +LM F +A+ + R
Sbjct: 90 AITDLMAELSLFEERFREAIKERR 113
>gi|195344678|ref|XP_002038908.1| GM17133 [Drosophila sechellia]
gi|194134038|gb|EDW55554.1| GM17133 [Drosophila sechellia]
Length = 105
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N +R L +D V F GY +PHP + + IR+QTT D + +E ++
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDHNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNA 90
Query: 71 CQELM 75
+L+
Sbjct: 91 ITDLL 95
>gi|17536663|ref|NP_496942.1| Protein RPB-11 [Caenorhabditis elegans]
gi|11387118|sp|Q9XVH6.1|RPB11_CAEEL RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|3924901|emb|CAB03455.1| Protein RPB-11 [Caenorhabditis elegans]
Length = 122
Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-----GDPAREV 66
A F++ +EDHTL N ++ L +DP V F GY PHP + ++ +R+QTT D
Sbjct: 30 AIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADALTTA 89
Query: 67 LKDSCQELMLMCRHVRSTFAK 87
+ D EL L+ + + K
Sbjct: 90 ITDLVGELSLLEHRIDAAIKK 110
>gi|296805491|ref|XP_002843570.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma otae CBS
113480]
gi|238844872|gb|EEQ34534.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma otae CBS
113480]
Length = 161
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVL 67
S A F+ +EDHTL N +R L Q V F GY IPHP +V +RVQT G P VL
Sbjct: 62 STAIFTFNKEDHTLGNMIRARLLQSQHVLFAGYKIPHPLVHKVLLRVQTDGQITPKDAVL 121
Query: 68 KDSCQELM 75
+C EL+
Sbjct: 122 T-ACHELV 128
>gi|449295408|gb|EMC91430.1| hypothetical protein BAUCODRAFT_127330 [Baudoinia compniacensis
UAMH 10762]
Length = 122
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F+ +EDHTL N +R L + P V F Y +PHP A +RVQT G+ + +E + +
Sbjct: 31 ALFTFNKEDHTLGNLLRAKLTKSPHVLFAAYQVPHPLFAVFKLRVQTDGEISPKEAVVQA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C +L+ + + F K
Sbjct: 91 CNDLVKELQTLDQEFTK 107
>gi|68072823|ref|XP_678325.1| DNA-directed RNA polymerase 2 [Plasmodium berghei strain ANKA]
gi|74991219|sp|Q4YZZ7.1|RPB11_PLABA RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|56498758|emb|CAH96395.1| DNA-directed RNA polymerase 2, putative [Plasmodium berghei]
Length = 126
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQE 73
F++ EDHT+ N ++ +L QDP+VTF Y PHP + I ++ G ++L D+
Sbjct: 38 FTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNVIEITIRPKGYAGVKLLSDNVHT 97
Query: 74 LMLMCRHVRSTFAKAVDDFR 93
++ +R TF V ++
Sbjct: 98 ILNQVSTLRETFVNKVQKYK 117
>gi|356531671|ref|XP_003534400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Glycine
max]
Length = 116
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A+F++ E+HT+ N +R L++DP V F GY +PHP ++ +R+ TT + + S
Sbjct: 31 ASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQS 90
Query: 71 CQELMLMCRHVRSTFAKAVDDF 92
+L H++S F + F
Sbjct: 91 INDLDRELDHLKSAFEAEMLKF 112
>gi|358248360|ref|NP_001240124.1| uncharacterized protein LOC100784219 [Glycine max]
gi|255626235|gb|ACU13462.1| unknown [Glycine max]
Length = 116
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A+F++ E+HT+ N +R L++DP V F GY +PHP ++ +R+ TT + + S
Sbjct: 31 ASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQS 90
Query: 71 CQELMLMCRHVRSTF 85
+L H++S F
Sbjct: 91 VNDLDRELDHLKSAF 105
>gi|397616203|gb|EJK63876.1| hypothetical protein THAOC_15445 [Thalassiosira oceanica]
Length = 123
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA--REVLKD 69
TF+L +EDHT+ N +R L +DP+V F GY PHP R++++VQT+ E L
Sbjct: 32 GTFTLNKEDHTVGNLLRMQLLRDPQVKFAGYMHPHPLVNRIHLKVQTSTSQVAPTESLSA 91
Query: 70 SCQELMLMCRHVRSTFAKAVDDFR 93
+ ++L H+ ++ A++ ++
Sbjct: 92 AIEDLSNETDHLITSVTDAIEKWK 115
>gi|452980663|gb|EME80424.1| hypothetical protein MYCFIDRAFT_78162 [Pseudocercospora fijiensis
CIRAD86]
Length = 124
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F+ +EDHTL N +R L + V F GY +PHP A +RVQT G+ + +E + ++
Sbjct: 31 AMFTFNKEDHTLGNLLRAKLAKSEHVLFAGYQVPHPLFATFKLRVQTDGEVSPKEAVVNA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C+E++ + F K
Sbjct: 91 CREVVKELGQLDQEFTK 107
>gi|403360631|gb|EJY79996.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 114
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKD 69
T ++ +EDH+L N VR L +P+V F GY PHP + V I+VQTTG+ P ++
Sbjct: 22 GTLTIKDEDHSLGNLVRQQLLHNPKVKFSGYRKPHPLEEYVEIKVQTTGEVSPPDSIIMA 81
Query: 70 SCQELMLM 77
S Q L M
Sbjct: 82 SEQLLSQM 89
>gi|393245982|gb|EJD53491.1| RBP11-like subunits of RNA polymerase [Auricularia delicata
TFB-10046 SS5]
Length = 148
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKD 69
AT + ++DHT+AN +R L P V F GY +PHP + ++VQT G PA +V++
Sbjct: 31 ATIKIIKQDHTMANMIRAQLLSMPGVLFAGYKVPHPLEPYFILKVQTDGQRTPA-QVVQA 89
Query: 70 SCQELM----LMCRHVRSTFAK 87
+CQEL+ ++ R F +
Sbjct: 90 ACQELIQTISILTERFRQEFTR 111
>gi|453082047|gb|EMF10095.1| RBP11-like subunits of RNA polymerase [Mycosphaerella populorum
SO2202]
Length = 121
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
+ F+ +EDHTL N +R L + V F GY +PHP A +RVQT G+ +E + ++
Sbjct: 31 SMFTFNKEDHTLGNLLRAKLAKADHVLFAGYQVPHPLFATFKLRVQTDGEITPKEAVVNA 90
Query: 71 CQELMLMCRHVRSTFAKAVD 90
CQ+L+ + F K ++
Sbjct: 91 CQDLVKELGQLDQEFTKEME 110
>gi|193671627|ref|XP_001943405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Acyrthosiphon pisum]
Length = 119
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
A F++ +EDHTL N +R L +DP V F GY +PHP + + +R+QT+
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFELRIQTS 78
>gi|341892406|gb|EGT48341.1| CBN-RPB-11 protein [Caenorhabditis brenneri]
Length = 122
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-----GDPAREV 66
A F++ +EDHTL N ++ L +DP V F GY PHP + ++ +R+QTT D
Sbjct: 30 AIFTINKEDHTLGNMLKVQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADALTTA 89
Query: 67 LKDSCQELMLMCR 79
+ D EL L+ R
Sbjct: 90 ITDLVGELSLLER 102
>gi|308480489|ref|XP_003102451.1| CRE-RPB-11 protein [Caenorhabditis remanei]
gi|308261183|gb|EFP05136.1| CRE-RPB-11 protein [Caenorhabditis remanei]
Length = 122
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-----GDPAREV 66
A F++ +EDHTL N ++ L +DP V F GY PHP + ++ +R+QTT D
Sbjct: 30 AIFTINKEDHTLGNMLKVQLLKDPEVLFAGYKNPHPLEHKILLRIQTTSQTTPADALTTA 89
Query: 67 LKDSCQELMLMCRHVRSTFAK 87
+ D EL L+ + + K
Sbjct: 90 ITDLVGELSLLEHRIDAAIKK 110
>gi|403223457|dbj|BAM41588.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 116
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
TF + EDHT + +R L++D RVTF GY IPHP + ++ IR++T D V+ +
Sbjct: 38 GTFIVHLEDHTFGSLIRSKLSKDDRVTFVGYRIPHPLENKLEIRLRTKMDNPFTVVMSAI 97
Query: 72 QELMLMCRHVRSTFAKAVD 90
L H+R + +D
Sbjct: 98 SNLRSNISHLRKVYLVRLD 116
>gi|213410391|ref|XP_002175965.1| DNA-directed RNA polymerase II complex subunit Rpb11
[Schizosaccharomyces japonicus yFS275]
gi|212004012|gb|EEB09672.1| DNA-directed RNA polymerase II complex subunit Rpb11
[Schizosaccharomyces japonicus yFS275]
Length = 123
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
+ A ++ +EDHTLAN +R L D RV F GY +PHP + +RVQTT + ++ +
Sbjct: 28 NTANITIEKEDHTLANMLRTQLLYDERVVFAGYRVPHPLNHNFILRVQTTEECSPKQAII 87
Query: 69 DSCQELMLMCRHVRSTFAK 87
D+ + L+ + ++ F +
Sbjct: 88 DASKSLITVLEQLKVNFTR 106
>gi|383859164|ref|XP_003705066.1| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Megachile rotundata]
Length = 108
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQ 72
TF E +TL NA+ + Q+P V FC + HP++ + +R+Q A ++LK Q
Sbjct: 18 TFIFKNEGYTLGNALVTIILQNPDVEFCACFVNHPAEGNIYLRIQAKKGKAVDILKKGLQ 77
Query: 73 ELMLMCRHVRSTFAKAVDDFRTSE 96
+ +C + +F A + F+ S+
Sbjct: 78 DFEKICDYTLESFNNAYEHFKNSK 101
>gi|326472986|gb|EGD96995.1| DNA-directed RNA polymerase II [Trichophyton tonsurans CBS 112818]
gi|326477317|gb|EGE01327.1| DNA-directed RNA polymerase I [Trichophyton equinum CBS 127.97]
Length = 160
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S A F+ +EDHTL N +R L Q+ V F GY IPHP +V +RVQT G +E +
Sbjct: 61 STAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYRIPHPLVHKVLLRVQTDGQITPKEAVL 120
Query: 69 DSCQELM 75
+C +L+
Sbjct: 121 AACHDLV 127
>gi|327304679|ref|XP_003237031.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
gi|326460029|gb|EGD85482.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
Length = 160
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S A F+ +EDHTL N +R L Q+ V F GY IPHP +V +RVQT G +E +
Sbjct: 61 STAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYRIPHPLVHKVLLRVQTDGQITPKEAVL 120
Query: 69 DSCQELM 75
+C +L+
Sbjct: 121 AACHDLV 127
>gi|19114245|ref|NP_593333.1| RNA polymerase II complex subunit Rpb11 [Schizosaccharomyces pombe
972h-]
gi|3219850|sp|P87123.1|RPB11_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II 14.1 kDa polypeptide
gi|256599725|pdb|3H0G|K Chain K, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599737|pdb|3H0G|W Chain W, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2104423|emb|CAB08752.1| RNA polymerase II complex subunit Rpb11 [Schizosaccharomyces pombe]
gi|2529239|dbj|BAA22801.1| RNA polymeraseII subunit Rpb11 [Schizosaccharomyces pombe]
gi|2529251|dbj|BAA22806.1| RNA polymerase II subunit Rpb11 [Schizosaccharomyces pombe]
gi|2708530|gb|AAB92517.1| Rpb11 [Schizosaccharomyces pombe]
Length = 123
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
A +L +EDHTLAN + L D RV F GY +PHP + +RVQT D ++V+ D+
Sbjct: 30 AVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVIVDA 89
Query: 71 CQELMLMCRHVRSTFAK 87
+ L+ ++ F +
Sbjct: 90 AKSLITHLEEIKVNFMR 106
>gi|440794029|gb|ELR15200.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 122
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA----- 63
Q+ ATF++ +EDHT+ N +R L DP V F GY +PHP I+VQT + +
Sbjct: 28 QNAATFNIEKEDHTIGNLLRMQLLSDPDVVFAGYKVPHPLKHTTVIKVQTNHNSSPVAAM 87
Query: 64 REVLKDSCQELMLMCRHVRSTFAK 87
L D E L+ S K
Sbjct: 88 TNALTDLLSEFNLLSERFNSALEK 111
>gi|169775525|ref|XP_001822230.1| DNA-directed RNA polymerase II subunit RPB11 [Aspergillus oryzae
RIB40]
gi|238495811|ref|XP_002379141.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus flavus NRRL3357]
gi|83770093|dbj|BAE60228.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694021|gb|EED50365.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus flavus NRRL3357]
gi|391874196|gb|EIT83118.1| RNA polymerase, subunit L [Aspergillus oryzae 3.042]
Length = 129
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S+A F+ +EDHTL N +R L Q V F Y +PHP + +RVQT G+ +E +
Sbjct: 29 SSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPHPLVPKFELRVQTDGEITPKEAVI 88
Query: 69 DSCQELM 75
+C EL+
Sbjct: 89 AACHELV 95
>gi|392576553|gb|EIW69684.1| hypothetical protein TREMEDRAFT_44159 [Tremella mesenterica DSM
1558]
Length = 161
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT--GDPAREVLKD 69
AT + ++DHT+ N +R L DP V F GY +PHP + + I++QT +PA + LK
Sbjct: 34 ATIMMKKQDHTMGNMIRAQLLLDPSVLFAGYKVPHPLENDILIKIQTDERSNPA-DALKR 92
Query: 70 SCQELMLMCRHVRSTFAK 87
+C L+ V+ F++
Sbjct: 93 ACTLLIQQLTEVKRQFSQ 110
>gi|451848796|gb|EMD62101.1| hypothetical protein COCSADRAFT_38897 [Cochliobolus sativus ND90Pr]
Length = 130
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVL 67
+ A F+ +EDHTL N + L ++P V F Y +PHP A +RVQT G P V+
Sbjct: 29 NTAVFTFNKEDHTLGNLLSQRLLKNPAVMFAAYKVPHPLFATFELRVQTDGSITPKEAVM 88
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRT 94
K CR V + +K D F+T
Sbjct: 89 K--------TCREVIADLSKLNDSFQT 107
>gi|226504996|ref|NP_001142057.1| uncharacterized protein LOC100274213 [Zea mays]
gi|194696560|gb|ACF82364.1| unknown [Zea mays]
gi|194699868|gb|ACF84018.1| unknown [Zea mays]
gi|194706942|gb|ACF87555.1| unknown [Zea mays]
gi|195615212|gb|ACG29436.1| DNA-directed RNA polymerase II subunit J [Zea mays]
gi|195628620|gb|ACG36140.1| DNA-directed RNA polymerase II subunit J [Zea mays]
gi|195656859|gb|ACG47897.1| DNA-directed RNA polymerase II subunit J [Zea mays]
gi|413937791|gb|AFW72342.1| DNA-directed RNA polymerase II subunit J isoform 1 [Zea mays]
gi|413937792|gb|AFW72343.1| DNA-directed RNA polymerase II subunit J isoform 2 [Zea mays]
gi|413937793|gb|AFW72344.1| DNA-directed RNA polymerase II subunit J isoform 3 [Zea mays]
gi|413937794|gb|AFW72345.1| DNA-directed RNA polymerase II subunit J isoform 4 [Zea mays]
gi|413937795|gb|AFW72346.1| DNA-directed RNA polymerase II subunit J isoform 5 [Zea mays]
Length = 120
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
A+F++ EDHT+ N +R L++DP V F GY +PHP ++ +R+ TT
Sbjct: 31 ASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTS 79
>gi|320591999|gb|EFX04438.1| DNA-directed RNA polymerase 2 subunit [Grosmannia clavigera kw1407]
Length = 168
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 7 GDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PARE 65
G + + F + +EDHTL N + L P++ GY + HP+ A V +RVQT G +E
Sbjct: 66 GMANTSDFLMLKEDHTLGNLLAEHLKMHPKILMAGYKVAHPNVAEVLLRVQTDGTVTPKE 125
Query: 66 VLKDSCQELMLMCRHVRSTFAK 87
VL + C++L+ H+ F +
Sbjct: 126 VLVEVCKQLVATLGHLSREFTR 147
>gi|451998617|gb|EMD91081.1| hypothetical protein COCHEDRAFT_1103438, partial [Cochliobolus
heterostrophus C5]
Length = 125
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVL 67
+ A F+ +EDHTL N + L ++P + F Y +PHP A +RVQT G P V+
Sbjct: 24 NTAVFTFNKEDHTLGNLLSQRLLKNPAIMFAAYKVPHPLFATFELRVQTDGSITPKEAVM 83
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRT 94
K CR V + +K D F+T
Sbjct: 84 K--------TCREVIADLSKLNDSFQT 102
>gi|209877969|ref|XP_002140426.1| DNA-directed RNA polymerases I and III subunit RPAC2
[Cryptosporidium muris RN66]
gi|209556032|gb|EEA06077.1| DNA-directed RNA polymerases I and III subunit RPAC2, putative
[Cryptosporidium muris RN66]
Length = 160
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
+ +N TF + EDHTL N +R +P TF GY+IPHPS + +N+R++T +
Sbjct: 29 ESANLTFQINGEDHTLGNIMRHLAMLNPSTTFAGYAIPHPSISSMNLRIETVSN 82
>gi|449436317|ref|XP_004135939.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
gi|449488830|ref|XP_004158185.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
Length = 116
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
ATF L EDHT+ N +R L++D V F GY +PHP R+ +R+QT
Sbjct: 31 ATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQT 77
>gi|448520186|ref|XP_003868244.1| Rpb11 RNA polymerase II subunit [Candida orthopsilosis Co 90-125]
gi|380352583|emb|CCG22810.1| Rpb11 RNA polymerase II subunit [Candida orthopsilosis]
Length = 122
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A + EDHTLAN +R L +D RV F Y + HP A +R+QT + + +E LK++
Sbjct: 31 AIVKIEREDHTLANLLRAQLLKDDRVIFAAYKVEHPLFANFVLRIQTEDNYSPKEALKNA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C L+ R + + F K
Sbjct: 91 CNALIAELRDISNKFQK 107
>gi|45185683|ref|NP_983399.1| ACL005Cp [Ashbya gossypii ATCC 10895]
gi|44981438|gb|AAS51223.1| ACL005Cp [Ashbya gossypii ATCC 10895]
gi|374106605|gb|AEY95514.1| FACL005Cp [Ashbya gossypii FDAG1]
Length = 122
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTL N +R L +D RV F Y + HP AR +R+QT G +E LK++C
Sbjct: 34 TFEKEDHTLGNIIRAELLEDERVLFAAYKVEHPLFARFRMRIQTAEGYDPKEALKNACNS 93
Query: 74 LMLMCRHVRSTF 85
++ ++S F
Sbjct: 94 IINKLATLKSNF 105
>gi|67528118|ref|XP_661873.1| hypothetical protein AN4269.2 [Aspergillus nidulans FGSC A4]
gi|40739747|gb|EAA58937.1| hypothetical protein AN4269.2 [Aspergillus nidulans FGSC A4]
gi|259481116|tpe|CBF74353.1| TPA: DNA-directed RNA polymerase II subunit RPB11a, putative
(AFU_orthologue; AFUA_7G03860) [Aspergillus nidulans
FGSC A4]
Length = 129
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVL 67
S+A F+ +EDHTL N +R L Q V F Y +PHP + +RVQT GD P + V+
Sbjct: 29 SSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPHPLVPKFILRVQTDGDISPKQAVI 88
Query: 68 KDSCQELM 75
+C EL+
Sbjct: 89 T-ACNELV 95
>gi|330843149|ref|XP_003293524.1| hypothetical protein DICPUDRAFT_90278 [Dictyostelium purpureum]
gi|325076130|gb|EGC29943.1| hypothetical protein DICPUDRAFT_90278 [Dictyostelium purpureum]
Length = 120
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
+ F + +EDHT+ N VR L DP + F GY +PHP + VNIR+QT
Sbjct: 31 SMFVILKEDHTVGNLVRMQLVADPDIIFAGYRMPHPLEHNVNIRIQT 77
>gi|298713624|emb|CBJ33676.1| RNA polymerase II core subunit [Ectocarpus siliculosus]
Length = 170
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
TF + +EDHTL N +R L D +V F GY PHP + +++I+VQT GD
Sbjct: 78 GTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGD 127
>gi|428671107|gb|EKX72026.1| DNA-directed RNA polymerase II, putative [Babesia equi]
Length = 122
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
TF + EDHT +R L++D RVTF GY IPHP + ++ IR++T D V+ ++
Sbjct: 38 GTFIVHLEDHTFGALIRSRLSRDERVTFVGYRIPHPLENKLEIRLRTKVDSPFTVILNAI 97
Query: 72 QELMLMCRHVRSTFAKAVDD 91
L H++ ++ A+ +
Sbjct: 98 SGLKGNFSHLKKVYSAALRE 117
>gi|388516987|gb|AFK46555.1| unknown [Lotus japonicus]
Length = 116
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A+F++ EDHT+ N +R L++DP V F GY +PHP ++ +R+ T + + S
Sbjct: 31 ASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTASQSSPMQAYNQS 90
Query: 71 CQELMLMCRHVRSTF 85
+L H+++ F
Sbjct: 91 INDLDKELDHLKNAF 105
>gi|402588406|gb|EJW82339.1| RNA polymerase II subunit [Wuchereria bancrofti]
Length = 166
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKD 69
A F++ +EDHT+ N ++ L +DP+V F GY PHP + + +RVQTT D PA + L
Sbjct: 31 AIFTVNKEDHTIGNLLKHQLLKDPQVLFAGYKCPHPLEHKFILRVQTTSDTTPA-DALTS 89
Query: 70 SCQELM 75
+ +LM
Sbjct: 90 AITDLM 95
>gi|354544239|emb|CCE40962.1| hypothetical protein CPAR2_110000 [Candida parapsilosis]
Length = 122
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A + EDHTLAN +R L +D RV F Y + HP A +R+QT D + ++ LK++
Sbjct: 31 AIIKIEREDHTLANLLRAQLLKDDRVIFAAYKVEHPLFANFVLRIQTEDDYSPKDALKNA 90
Query: 71 CQELMLMCRHVRSTFAK 87
CQ L+ + + F +
Sbjct: 91 CQALIAELQAINDKFQR 107
>gi|449544553|gb|EMD35526.1| hypothetical protein CERSUDRAFT_116269 [Ceriporiopsis subvermispora
B]
Length = 141
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKD 69
AT + ++DHTL N +R L Q P V F GY +PHP I++QT G PA VL+
Sbjct: 31 ATIKVVKQDHTLGNMLRAQLLQMPEVLFAGYKVPHPLQPYFLIKIQTDGSVTPAA-VLEQ 89
Query: 70 SCQELMLMCRHVRSTFAK 87
+C +L+ + F +
Sbjct: 90 ACTKLIGTLSSLEQKFKR 107
>gi|146324809|ref|XP_749122.2| DNA-directed RNA polymerase II subunit RPB11a [Aspergillus
fumigatus Af293]
gi|129556648|gb|EAL87084.2| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus fumigatus Af293]
Length = 167
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S++ F+ +EDHTL N +R L Q+ V F GY +PHP + +RVQT G+ ++ L
Sbjct: 67 SSSIFTFNKEDHTLGNLLRSRLLQNSHVIFAGYKVPHPLVPKFELRVQTDGEITPKDALL 126
Query: 69 DSCQELM 75
+C +L+
Sbjct: 127 AACHDLV 133
>gi|413937790|gb|AFW72341.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
Length = 112
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
A+F++ EDHT+ N +R L++DP V F GY +PHP ++ +R+ TT
Sbjct: 31 ASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTS 79
>gi|357111228|ref|XP_003557416.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Brachypodium distachyon]
Length = 120
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
A+F++ EDHT+ N +R L++DP V F GY +PHP ++ +R+ T
Sbjct: 31 ASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHT 77
>gi|340058381|emb|CCC52737.1| putative DNA-directed RNA polymerase II [Trypanosoma vivax Y486]
Length = 132
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
+++ F + +EDHTLAN +R L+++ V GY +PHP+ RV +RVQT D
Sbjct: 38 NSSLFKIDKEDHTLANLLRMRLHENSLVRIAGYRVPHPTQHRVELRVQTASD 89
>gi|395324938|gb|EJF57369.1| DNA-directed RNA polymerase II [Dichomitus squalens LYAD-421 SS1]
Length = 142
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKD 69
AT + ++DHTLAN +R L P V F GY PHP +++QT G PA +L+
Sbjct: 31 ATIKIVKQDHTLANLLRSQLLGYPSVLFAGYKAPHPLQPHFLLKIQTDGSITPAA-ILEK 89
Query: 70 SCQELMLMCRHVRSTFAK 87
+C +L+ M + S F +
Sbjct: 90 ACTDLIGMVATLESKFKR 107
>gi|358373008|dbj|GAA89608.1| DNA-directed RNA polymerase II subunit RPB11a [Aspergillus kawachii
IFO 4308]
Length = 161
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLK 68
S+A F+ +EDHTL N +R L Q V F Y +PHP +RVQT GD + ++ +
Sbjct: 61 SSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPHPLVPNFQLRVQTDGDVSPKDAVI 120
Query: 69 DSCQELM 75
+C EL+
Sbjct: 121 AACHELV 127
>gi|156372989|ref|XP_001629317.1| predicted protein [Nematostella vectensis]
gi|156216314|gb|EDO37254.1| predicted protein [Nematostella vectensis]
Length = 117
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F + +EDHTL N +R L +DP+V F GY + HP + + +RVQTT D + +E +
Sbjct: 31 AHFVVNKEDHTLGNLLREQLLKDPQVIFAGYKVSHPLEHKFVLRVQTTSDYSPQEAFTHA 90
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+L+ + F AV D
Sbjct: 91 ITDLISEVSLLEERFKAAVRD 111
>gi|452837613|gb|EME39555.1| hypothetical protein DOTSEDRAFT_75275 [Dothistroma septosporum
NZE10]
Length = 121
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAREVLKD 69
A F+ +EDHTL N +R L + V F GY +PHP A +RVQT G P +E +
Sbjct: 31 AMFTFNKEDHTLGNLLRAKLVKSDHVLFAGYQVPHPLFATFKLRVQTDGVIQP-KEAVVT 89
Query: 70 SCQELMLMCRHVRSTFAK 87
+C+EL+ + F K
Sbjct: 90 ACKELVSELQQFDQEFTK 107
>gi|297819918|ref|XP_002877842.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]
gi|297323680|gb|EFH54101.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]
Length = 116
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-----REV 66
A+F++ EDHT+ N VR L++D V F GY +PHP ++ +R+ TT + +
Sbjct: 31 ASFTIEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQA 90
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDF 92
+ D +EL + + AK + F
Sbjct: 91 INDLDKELDYLKNQFEAEVAKFSNQF 116
>gi|312090992|ref|XP_003146821.1| RNA polymerase II [Loa loa]
Length = 124
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKD 69
A F++ +EDHT+ N ++ L +DP+V F GY PHP + + +RVQTT D PA + L
Sbjct: 31 AIFTVNKEDHTIGNLLKHQLLKDPQVLFAGYKCPHPLEHKFILRVQTTSDTTPA-DALTS 89
Query: 70 SCQELM 75
+ +LM
Sbjct: 90 AITDLM 95
>gi|119482558|ref|XP_001261307.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Neosartorya fischeri NRRL 181]
gi|119409462|gb|EAW19410.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Neosartorya fischeri NRRL 181]
Length = 167
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S++ F+ +EDHTL N +R L Q+ V F GY +PHP + +RVQT G+ ++ L
Sbjct: 67 SSSIFTFNKEDHTLGNLLRSRLLQNSHVIFAGYKVPHPLVPKFELRVQTDGEITPKDALL 126
Query: 69 DSCQELM 75
+C +L+
Sbjct: 127 AACHDLV 133
>gi|358054586|dbj|GAA99512.1| hypothetical protein E5Q_06213 [Mixia osmundae IAM 14324]
Length = 148
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE----VL 67
AT + +EDHT+ N +R L P V F GY +PHP A V +R+Q G + + L
Sbjct: 34 ATVIIKKEDHTIGNMLRGQLLHIPYVVFAGYRVPHPLQADVVLRIQVDGKDSSQTPTTAL 93
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDF 92
+ + +EL+L+ R F + F
Sbjct: 94 QTATRELILILAAARLQFEASCKSF 118
>gi|413937810|gb|AFW72361.1| hypothetical protein ZEAMMB73_595234 [Zea mays]
Length = 208
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG----DPAREVL 67
A+F++ EDHT+ N +R L++DP V F GY +PHP ++ +R T D E L
Sbjct: 135 ASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRAYTQAINDLDKELEYL 194
Query: 68 KDSCQELML 76
K + +++ L
Sbjct: 195 KQAFEQMHL 203
>gi|241948087|ref|XP_002416766.1| DNA-directed RNA polymerase II [13.6 kda] subunit, putative
[Candida dubliniensis CD36]
gi|223640104|emb|CAX44350.1| DNA-directed RNA polymerase II [13.6 kda] subunit, putative
[Candida dubliniensis CD36]
Length = 124
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A + EDHTLAN +R L +D RV F Y + HP A +RVQT D + RE L+++
Sbjct: 31 AIVKIEREDHTLANLLRAQLLKDERVLFAAYKVEHPLFANFVLRVQTEDDYSPREALQNA 90
Query: 71 CQELMLMCRHVRSTF 85
C L+ ++S F
Sbjct: 91 CSSLISELDVIKSKF 105
>gi|340504627|gb|EGR31054.1| DNA-directed polymerase II polypeptide J, putative
[Ichthyophthirius multifiliis]
Length = 125
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLK 68
+++ T + EDHT+ N +R L + V F GY +PHP + +V I+VQT D E+L
Sbjct: 37 KNSKTIIMNLEDHTIGNLIRMYLLKSKEVKFAGYRMPHPLETKVEIKVQTVKDNTCEILI 96
Query: 69 DSCQELMLMCRHVRSTFAK 87
++ L+ ++ F K
Sbjct: 97 NTLDGLIKDIDIIQYDFEK 115
>gi|357159114|ref|XP_003578343.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Brachypodium distachyon]
gi|357159117|ref|XP_003578344.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 2 [Brachypodium distachyon]
Length = 119
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
A+F++ EDHT+ N +R L++DP V F GY +PHP ++ +R+ T
Sbjct: 31 ASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTAS 79
>gi|328859791|gb|EGG08899.1| hypothetical protein MELLADRAFT_34668 [Melampsora larici-populina
98AG31]
Length = 159
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSC 71
T ++ +EDHTL N +R L Q V F GY +PHP + R I+VQT G + ++++
Sbjct: 32 TVTINKEDHTLGNMLRAQLLQMEYVIFAGYKVPHPLEPRFIIKVQTDGTHTPIQAIQEAV 91
Query: 72 QELMLMCRHVRSTFAKAVDDFRTSEKV 98
+ L+L +R++ ++FR ++ V
Sbjct: 92 KSLILSLDKMRNSLQ---NEFRVAKAV 115
>gi|353241710|emb|CCA73506.1| related to DNA-directed RNA polymerase 13.3K chain [Piriformospora
indica DSM 11827]
Length = 138
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
ATF + ++DHTLAN +R L +D V F GY +PHP + ++VQT G +V+ +
Sbjct: 34 ATFRIYKQDHTLANMIRTQLLEDKNVIFAGYKVPHPLEPYFLLKVQTNGSLTPTDVVNTA 93
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
C ++ + F + D
Sbjct: 94 CASIIATVSQLEKRFEEQFRD 114
>gi|326495250|dbj|BAJ85721.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518464|dbj|BAJ88261.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525789|dbj|BAJ88941.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 119
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
A+F++ EDHT+ N +R L++DP V F GY +PHP ++ +R+ T
Sbjct: 31 ASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHT 77
>gi|326500404|dbj|BAK06291.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 120
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
A+F++ EDHT+ N +R L++DP V F GY +PHP ++ +R+ T
Sbjct: 31 ASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHT 77
>gi|15231127|ref|NP_190777.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
gi|3219858|sp|Q38859.1|RPB11_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II 13.6 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
II subunit J
gi|881501|gb|AAB02849.1| RNA polymerase II 13.6 kDa subunit [Arabidopsis thaliana]
gi|4678938|emb|CAB41329.1| DNA-directed RNA polymerase II 13.6K chain [Arabidopsis thaliana]
gi|29029080|gb|AAO64919.1| At3g52090 [Arabidopsis thaliana]
gi|332645368|gb|AEE78889.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
Length = 116
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-----REV 66
A+F++ EDHT+ N VR L++D V F GY +PHP ++ +R+ TT + +
Sbjct: 31 ASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQA 90
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDF 92
+ D +EL + + AK + F
Sbjct: 91 INDLDKELDYLKNQFEAEVAKFSNQF 116
>gi|145247839|ref|XP_001396168.1| DNA-directed RNA polymerase II subunit RPB11 [Aspergillus niger
CBS 513.88]
gi|134080912|emb|CAK46429.1| unnamed protein product [Aspergillus niger]
Length = 129
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S+A F+ +EDHTL N +R L Q V F Y +PHP +RVQT GD ++ +
Sbjct: 29 SSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPHPLVPNFQLRVQTDGDITPKDAVI 88
Query: 69 DSCQELM 75
+C EL+
Sbjct: 89 AACHELV 95
>gi|83286192|ref|XP_730053.1| RNA polymerases L / 13 to 16 kDa subunit [Plasmodium yoelii
yoelii 17XNL]
gi|23489608|gb|EAA21618.1| RNA polymerases L / 13 to 16 kDa subunit, putative [Plasmodium
yoelii yoelii]
Length = 117
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQE 73
F++ EDHTL N ++ +L QDP+VTF Y PHP + I ++ G ++L D+
Sbjct: 14 FTIKLEDHTLGNLIKQSLCQDPKVTFAAYRQPHPLQNEIEITIRPKGYAGVKLLSDNVHT 73
Query: 74 LMLMCRHVRSTFA 86
++ +R TF
Sbjct: 74 ILNQVSTLRETFV 86
>gi|149641980|ref|XP_001514119.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Ornithorhynchus anatinus]
Length = 117
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V Y +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLLQEYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>gi|388579813|gb|EIM20133.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wallemia sebi CBS 633.66]
Length = 136
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA--REVL 67
S +T +L +DHT+AN + +++D V F GY +PHP + + IRVQT +E L
Sbjct: 29 STSTITLNRQDHTIANLLSNEISKDKNVVFSGYRVPHPLNPKSEIRVQTLNGTVTPKECL 88
Query: 68 KDSCQELMLMC 78
KD+ L+ C
Sbjct: 89 KDAATRLLADC 99
>gi|344304502|gb|EGW34734.1| RNA polymerase II core subunit [Spathaspora passalidarum NRRL
Y-27907]
Length = 122
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A + EDHTLAN +R L +D +V F Y + HP A +R+QT D + RE LK++
Sbjct: 31 AIIKIEREDHTLANLLRNQLLKDEKVIFAAYKVEHPLFANFVLRIQTEDDYSPREALKNA 90
Query: 71 CQELMLMCRHVRSTF 85
C L+ ++S F
Sbjct: 91 CSGLISELDAIKSRF 105
>gi|225682162|gb|EEH20446.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
gi|226289350|gb|EEH44862.1| DNA-directed RNA polymerase II [Paracoccidioides brasiliensis
Pb18]
Length = 128
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S A F+ +EDHTL N +R L V F GY +PHP + +RVQT G +E +
Sbjct: 29 STAIFTFNKEDHTLGNMIRSRLLNSSHVLFSGYKVPHPLIPKFILRVQTDGQITPKEAVI 88
Query: 69 DSCQELM 75
+C EL+
Sbjct: 89 TACHELV 95
>gi|367038609|ref|XP_003649685.1| hypothetical protein THITE_2108460 [Thielavia terrestris NRRL 8126]
gi|346996946|gb|AEO63349.1| hypothetical protein THITE_2108460 [Thielavia terrestris NRRL 8126]
Length = 138
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 GDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PARE 65
G + + F L +EDHTL N + L P V GY I HP+ V IRVQT G RE
Sbjct: 26 GMSNTSDFILLKEDHTLGNLLSEHLKMAPHVMMAGYKIDHPNVPEVLIRVQTDGSITPRE 85
Query: 66 VLKDSCQELMLMCRHVRSTFAKAV 89
L C++L+ M + F K +
Sbjct: 86 ALVRVCKQLVAMYGQLGREFQKEL 109
>gi|256078288|ref|XP_002575428.1| DNA-directed rna polymerase II 13.3 kD polypeptide [Schistosoma
mansoni]
gi|226489581|emb|CAX74941.1| hypotherical protein [Schistosoma japonicum]
gi|226489583|emb|CAX74942.1| hypotherical protein [Schistosoma japonicum]
gi|226489585|emb|CAX74943.1| hypotherical protein [Schistosoma japonicum]
gi|360043356|emb|CCD78769.1| putative dna-directed rna polymerase II 13.3 kD polypeptide
[Schistosoma mansoni]
Length = 110
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREV----- 66
A F+L EDHT+ N + L +DPRV F GY PHP + ++ IRV T PA V
Sbjct: 31 AIFTLNREDHTVGNMITCQLLKDPRVLFAGYKAPHPLEHKIVIRVH-TAHPATPVDVFVS 89
Query: 67 -LKDSCQEL 74
LKD E+
Sbjct: 90 ALKDLISEI 98
>gi|242047078|ref|XP_002461285.1| hypothetical protein SORBIDRAFT_02g000210 [Sorghum bicolor]
gi|241924662|gb|EER97806.1| hypothetical protein SORBIDRAFT_02g000210 [Sorghum bicolor]
Length = 120
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
A+F++ EDHT+ N +R L++DP V F GY +PHP ++ +R+ T
Sbjct: 31 ASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHT 77
>gi|406606706|emb|CCH41930.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 121
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVL 67
++ A + +EDHTL N +R L +D RV F Y + HP A +R+QT + RE L
Sbjct: 28 ENAAIVTFEKEDHTLGNLLRAQLLKDERVVFAAYKVEHPLFANFVMRIQTEDNYTPREAL 87
Query: 68 KDSCQELMLMCRHVRSTFAKAVD 90
K++C ++ ++S F D
Sbjct: 88 KNACYNVIAQIEALKSKFKNEWD 110
>gi|367025619|ref|XP_003662094.1| hypothetical protein MYCTH_2302244 [Myceliophthora thermophila
ATCC 42464]
gi|347009362|gb|AEO56849.1| hypothetical protein MYCTH_2302244 [Myceliophthora thermophila
ATCC 42464]
Length = 116
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F L +EDHTL N + L P V GY I HP+ V IRVQT G RE L C+
Sbjct: 7 FILLKEDHTLGNLLSAYLKMAPHVMMAGYKIGHPNVPEVLIRVQTDGTITPREALVTVCK 66
Query: 73 ELMLMCRHVRSTFAK 87
+L+ M + F K
Sbjct: 67 QLVAMYGQLGREFQK 81
>gi|219122878|ref|XP_002181764.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407040|gb|EEC46978.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 125
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKD 69
TF L +EDHT+ N +R L +DP V F GY PHP + ++VQT EVL +
Sbjct: 33 GTFRLNKEDHTVLNLLRMQLLRDPGVRFAGYIHPHPLINYMELKVQTNSSHTSPTEVLSN 92
Query: 70 SCQELMLMCRHVRSTFAKAVDDFR 93
+ ++L H+ A++++R
Sbjct: 93 AIEDLGSETDHLLKEVQNAMENWR 116
>gi|85000057|ref|XP_954747.1| DNA-directed RNA polymerase II [Theileria annulata strain Ankara]
gi|65302893|emb|CAI75271.1| DNA-directed RNA polymerase II, putative [Theileria annulata]
Length = 124
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
TF + EDHT + +R L++D RVTF GY +PHP + ++ IR++T D V+ +
Sbjct: 38 GTFIVHLEDHTFGSLIRTKLSKDDRVTFVGYRMPHPLENKLEIRIRTKTDNPFTVILSAI 97
Query: 72 QELMLMCRHVRSTFAKAVDDFRT 94
+ H+R+ + ++ F T
Sbjct: 98 TNIRNNLSHLRNIYM-VINYFYT 119
>gi|392562097|gb|EIW55278.1| RBP11-like subunits of RNA polymerase [Trametes versicolor
FP-101664 SS1]
Length = 139
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
AT + ++DHTLAN +R L P+VTF GY +PHP +++QT G +VL+ +
Sbjct: 31 ATVKIVKQDHTLANLLRSQLLSMPQVTFAGYKVPHPLHPYFLLKIQTDGSVTPTQVLETA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C +L+ + + F +
Sbjct: 91 CTKLIGTIATLEAKFKR 107
>gi|326435884|gb|EGD81454.1| DNA-directed RNA polymerase II subunit J [Salpingoeca sp. ATCC
50818]
Length = 202
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
TF + EDHTL N + L +DPRV F GY PHP + + +R+QTT D +E LK
Sbjct: 31 GTFRINREDHTLGNMLASQLRRDPRVLFSGYRCPHPLEHHLLLRIQTTPDYSPKEALK 88
>gi|335345786|gb|AEH41473.1| DNA-directed RNA polymerase II subunit RPB11a [Endocarpon
pusillum]
Length = 124
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQ 72
F +EDHTL N +R L QD RVTF Y +PHP +RVQT G + +E L +C+
Sbjct: 34 FKFNKEDHTLGNLLRARLLQDRRVTFAAYKVPHPLFPTFELRVQTDGSLSPKEALLQACR 93
Query: 73 E 73
+
Sbjct: 94 D 94
>gi|147832705|emb|CAN70445.1| hypothetical protein VITISV_015574 [Vitis vinifera]
Length = 129
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
A+F++ EDHT+ N +R L++D V F GY +PHP ++ IR+ TT
Sbjct: 44 ASFTVEREDHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIIRIHTTS 92
>gi|125557390|gb|EAZ02926.1| hypothetical protein OsI_25066 [Oryza sativa Indica Group]
gi|125599273|gb|EAZ38849.1| hypothetical protein OsJ_23266 [Oryza sativa Japonica Group]
Length = 135
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
+F++ EDHT+ N +R L++DP V F GY +PHP ++ +RV T
Sbjct: 46 GSFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKILVRVHT 92
>gi|429860805|gb|ELA35525.1| amino acid permease [Colletotrichum gloeosporioides Nara gc5]
Length = 855
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E F SN + F L +EDHTL N + L Q V GY I HP+ + IRVQT
Sbjct: 749 IEEKVFSGMSNTSDFILKKEDHTLGNLLSEHLKQHKNVLMAGYKISHPNVPELFIRVQTD 808
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
G P +E L + LM H+ F + + R E
Sbjct: 809 GSIPPKEALVQVIKRLMQDFSHLSREFTREFELRRMVE 846
>gi|398017622|ref|XP_003861998.1| DNA-directed RNA polymerase II-like protein [Leishmania donovani]
gi|401424491|ref|XP_003876731.1| DNA-directed RNA polymerase II-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492974|emb|CBZ28256.1| DNA-directed RNA polymerase II-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322500226|emb|CBZ35303.1| DNA-directed RNA polymerase II-like protein [Leishmania donovani]
Length = 134
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
+++ F + +EDHTLAN +R L++ P V GY +PHP+ V +RVQT +
Sbjct: 38 NSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQTASN 89
>gi|242775658|ref|XP_002478685.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722304|gb|EED21722.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Talaromyces stipitatus ATCC 10500]
Length = 156
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S + F+L +EDH++ N +R L Q+ VTF Y IPHP +V +RVQT G+ +E L
Sbjct: 57 STSIFTLNKEDHSVGNLLRGRLLQNRHVTFAAYKIPHPLVHKVELRVQTDGEITPKEALL 116
Query: 69 DSCQE 73
+C +
Sbjct: 117 AACHD 121
>gi|146090865|ref|XP_001466380.1| DNA-directed RNA polymerase II-like protein [Leishmania infantum
JPCM5]
gi|134070742|emb|CAM69097.1| DNA-directed RNA polymerase II-like protein [Leishmania infantum
JPCM5]
Length = 134
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
+++ F + +EDHTLAN +R L++ P V GY +PHP+ V +RVQT +
Sbjct: 38 NSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQTASN 89
>gi|315045778|ref|XP_003172264.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma gypseum
CBS 118893]
gi|311342650|gb|EFR01853.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma gypseum
CBS 118893]
Length = 161
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S A F+ +EDHTL N +R L Q+ V F Y IPHP +V +RVQT G +E +
Sbjct: 62 STAIFTFNKEDHTLGNLIRSRLFQNQHVLFSAYKIPHPLVHKVLLRVQTDGQITPKEAVL 121
Query: 69 DSCQELM 75
+C +L+
Sbjct: 122 AACHDLV 128
>gi|389593419|ref|XP_003721963.1| DNA-directed RNA polymerase II-like protein [Leishmania major
strain Friedlin]
gi|321438465|emb|CBZ12222.1| DNA-directed RNA polymerase II-like protein [Leishmania major
strain Friedlin]
Length = 134
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
+++ F + +EDHTLAN +R L++ P V GY +PHP+ V +RVQT +
Sbjct: 38 NSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQTASN 89
>gi|389748032|gb|EIM89210.1| RBP11-like subunits of RNA polymerase [Stereum hirsutum FP-91666
SS1]
Length = 166
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAREVLKD 69
AT + ++DHTL N +R L Q P+V F GY +PHP I++QT G PA L+
Sbjct: 31 ATIKVLKQDHTLGNMIRAQLLQSPQVLFAGYKVPHPLHPYFLIKLQTDGTITPAY-ALEQ 89
Query: 70 SCQELMLMCRHVRSTFAK 87
+C +L+ + + F +
Sbjct: 90 ACTKLIGTLASLETQFKR 107
>gi|358332944|dbj|GAA51526.1| DNA-directed RNA polymerase II subunit RPB11 [Clonorchis
sinensis]
Length = 177
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
A F+L EDHT+ N + L +DPRV F GY PHP + ++ IRVQT
Sbjct: 44 AIFTLNREDHTVGNMLTCQLLKDPRVLFAGYKAPHPLEHKIVIRVQT 90
>gi|261200199|ref|XP_002626500.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239593572|gb|EEQ76153.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607549|gb|EEQ84536.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327352540|gb|EGE81397.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 128
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S A F+ +EDHTL N +R L V F GY +PHP + +RVQT G +E +
Sbjct: 29 STAIFTFHKEDHTLGNMIRSRLINSSHVLFSGYKVPHPLVPKFILRVQTDGQITPKEAVI 88
Query: 69 DSCQELM 75
+C EL+
Sbjct: 89 TACHELV 95
>gi|115470799|ref|NP_001058998.1| Os07g0172500 [Oryza sativa Japonica Group]
gi|34394446|dbj|BAC83620.1| putative DNA-directed RNA polymerase II 13.6K chain [Oryza sativa
Japonica Group]
gi|113610534|dbj|BAF20912.1| Os07g0172500 [Oryza sativa Japonica Group]
gi|215704597|dbj|BAG94225.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 120
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
+F++ EDHT+ N +R L++DP V F GY +PHP ++ +RV T
Sbjct: 31 GSFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKILVRVHT 77
>gi|321474423|gb|EFX85388.1| hypothetical protein DAPPUDRAFT_230556 [Daphnia pulex]
Length = 117
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG-----DPAREV 66
A F++ +EDHTL N +R L +DP V F GY PHP + + +R+Q+T D
Sbjct: 31 AIFTVNKEDHTLGNMIRCQLLKDPNVLFAGYKQPHPLEHKFILRIQSTPAYSPHDALMNA 90
Query: 67 LKDSCQELMLMCRHVR 82
+ D EL L+ R
Sbjct: 91 ITDLISELSLLEERFR 106
>gi|409077044|gb|EKM77412.1| hypothetical protein AGABI1DRAFT_115317 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 148
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
AT + ++DHTL N +R L P++ F GY +PHP I++QT G +E+L+ +
Sbjct: 31 ATIKILKQDHTLGNMLRAQLLSMPQILFAGYKVPHPLHPYFLIKIQTDGTITPQELLEQA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C +L+ + + F +
Sbjct: 91 CTKLIGTMSSLETKFKR 107
>gi|225430537|ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Vitis
vinifera]
gi|296082163|emb|CBI21168.3| unnamed protein product [Vitis vinifera]
Length = 116
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
A+F++ EDHT+ N +R L++D V F GY +PHP ++ IR+ TT
Sbjct: 31 ASFTVEREDHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIIRIHTTS 79
>gi|254579979|ref|XP_002495975.1| ZYRO0C07502p [Zygosaccharomyces rouxii]
gi|238938866|emb|CAR27042.1| ZYRO0C07502p [Zygosaccharomyces rouxii]
Length = 122
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTL N +R L DP+V F Y + HP AR +R+QT G ++ LK++C
Sbjct: 34 TFEKEDHTLGNLIRAELLNDPKVLFAAYKVEHPLFARFKMRIQTMEGYDPKDALKNACNG 93
Query: 74 LMLMCRHVRSTF 85
++ +++ F
Sbjct: 94 IINKLGVLKTNF 105
>gi|71026805|ref|XP_763046.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68349999|gb|EAN30763.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 133
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
TF + EDHT + +R L++D RVTF GY +PHP + ++ IR++T D V+ +
Sbjct: 38 GTFIVHLEDHTFGSLIRSKLSKDDRVTFVGYRMPHPLENKLEIRIRTKTDNPFTVILSAI 97
Query: 72 QELMLMCRHVRSTF 85
L H+++ +
Sbjct: 98 TNLRTNLSHLKNLY 111
>gi|157871878|ref|XP_001684488.1| DNA-directed RNA polymerase-like protein [Leishmania major strain
Friedlin]
gi|68127557|emb|CAJ05635.1| DNA-directed RNA polymerase-like protein [Leishmania major strain
Friedlin]
Length = 137
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
++S A + + EDHTL N +R L Q+ VT GY+IPHP + ++ + VQ + D A E +
Sbjct: 44 NESTAVVAFSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLLHVQAS-DYAVEAV 102
Query: 68 KDSCQELMLMCRHVRSTF 85
+ L +C S+F
Sbjct: 103 AKGLERLAEICDDTISSF 120
>gi|154339938|ref|XP_001565926.1| DNA-directed RNA polymerase II-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134063244|emb|CAM45446.1| DNA-directed RNA polymerase II-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 134
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
+++ F + +EDHTLAN +R L++ P V GY +PHP+ V +RVQT
Sbjct: 38 NSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQT 86
>gi|302831972|ref|XP_002947551.1| hypothetical protein VOLCADRAFT_103489 [Volvox carteri f.
nagariensis]
gi|300267415|gb|EFJ51599.1| hypothetical protein VOLCADRAFT_103489 [Volvox carteri f.
nagariensis]
Length = 120
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-----V 66
TFS EDHT+ N +R L+ D + F GY IPHP + + ++VQT G + E
Sbjct: 31 GTFSFRSEDHTMGNLLRMQLHSDKAMVFAGYRIPHPLEPVMVVKVQTNGTKSPEEAMVHA 90
Query: 67 LKDSCQELMLMC 78
L+D E M
Sbjct: 91 LQDLASEFGYML 102
>gi|238879406|gb|EEQ43044.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide [Candida
albicans WO-1]
Length = 124
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A + EDHTLAN +R L +D RV F Y + HP A +R+QT D + RE L+++
Sbjct: 31 AIVKIEREDHTLANLLRAQLLKDDRVLFAAYKVEHPLFANFVLRIQTEDDYSPREALQNA 90
Query: 71 CQELMLMCRHVRSTF 85
C L+ ++S F
Sbjct: 91 CSGLISELDVIKSKF 105
>gi|426195387|gb|EKV45317.1| hypothetical protein AGABI2DRAFT_194279 [Agaricus bisporus var.
bisporus H97]
Length = 148
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
AT + ++DHTL N +R L P++ F GY +PHP I++QT G +E+L+ +
Sbjct: 31 ATIKILKQDHTLGNMLRAQLLSMPQILFAGYKVPHPLHPYFLIKIQTDGTITPQELLEQA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C +L+ + + F +
Sbjct: 91 CTKLIGTMSSLETKFKR 107
>gi|295661939|ref|XP_002791524.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226280081|gb|EEH35647.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 169
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S A F+ +EDHTL N +R L V F GY +PHP + +RVQT G +E +
Sbjct: 69 STAIFTFNKEDHTLGNMIRSRLLNSSHVLFSGYKVPHPLIPKFILRVQTDGQITPKEAVI 128
Query: 69 DSCQELM 75
+C EL+
Sbjct: 129 TACHELV 135
>gi|259149481|emb|CAY86285.1| Rpb11p [Saccharomyces cerevisiae EC1118]
Length = 120
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTL N +R L D +V F Y + HP AR +RVQTT G ++ LK++C
Sbjct: 34 TFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRVQTTEGYDPKDALKNACNS 93
Query: 74 LMLMCRHVRSTF 85
++ +++ F
Sbjct: 94 IINKLGALKTNF 105
>gi|111226740|ref|XP_642530.2| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74861274|sp|Q86JJ5.1|RPB11_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|90970744|gb|EAL68596.2| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 120
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
+ F++ +EDHT+ N +R L D + F GY +PHP + VNIR+QT +
Sbjct: 31 SMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQTNNN 80
>gi|225556050|gb|EEH04340.1| polymerase II polypeptide J [Ajellomyces capsulatus G186AR]
gi|240278457|gb|EER41963.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H143]
gi|325090627|gb|EGC43937.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H88]
Length = 168
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S A F+ +EDHTL N +R L V F GY +PHP + +RVQT G +E +
Sbjct: 69 STAIFTFNKEDHTLGNMIRSRLITSSHVLFSGYKVPHPLVPKFILRVQTDGQITPKEAVI 128
Query: 69 DSCQELM 75
+C EL+
Sbjct: 129 TACHELV 135
>gi|146092259|ref|XP_001470246.1| DNA-directed RNA polymerase-like protein [Leishmania infantum
JPCM5]
gi|398018276|ref|XP_003862319.1| DNA-directed RNA polymerase-like protein [Leishmania donovani]
gi|134085040|emb|CAM69441.1| DNA-directed RNA polymerase-like protein [Leishmania infantum
JPCM5]
gi|322500548|emb|CBZ35625.1| DNA-directed RNA polymerase-like protein [Leishmania donovani]
Length = 137
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
++S A + + EDHTL N +R L Q+ VT GY+IPHP + ++ + VQ + D A E +
Sbjct: 44 NESTAVVTFSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLLHVQAS-DYAVEAV 102
Query: 68 KDSCQELMLMCRHVRSTF 85
+ L +C S+F
Sbjct: 103 AKGLERLAEICDDTISSF 120
>gi|154275934|ref|XP_001538812.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150413885|gb|EDN09250.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 168
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S A F+ +EDHTL N +R L V F GY +PHP + +RVQT G +E +
Sbjct: 69 STAIFTFNKEDHTLGNMIRSRLITSSHVLFSGYKVPHPLVPKFILRVQTDGQITPKEAVI 128
Query: 69 DSCQELM 75
+C EL+
Sbjct: 129 TACHELV 135
>gi|449464004|ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
gi|449516703|ref|XP_004165386.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
Length = 116
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-----REV 66
A+F++ E+HT+ N +R L++D V F GY +PHP ++ +R+ TT + +
Sbjct: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDF 92
+ D +EL + + FAK D+
Sbjct: 91 INDLDKELDHLKNAFEAEFAKFSRDY 116
>gi|410074997|ref|XP_003955081.1| hypothetical protein KAFR_0A05110 [Kazachstania africana CBS 2517]
gi|372461663|emb|CCF55946.1| hypothetical protein KAFR_0A05110 [Kazachstania africana CBS 2517]
Length = 122
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTL N +R L D +V F Y + HP AR +RVQT G +E LK++C
Sbjct: 34 TFEKEDHTLGNLIRAELLNDTKVLFAAYKVEHPFFARFKLRVQTIEGYDPKEALKNACNS 93
Query: 74 LMLMCRHVRSTF 85
++ +++ F
Sbjct: 94 IINKLGILKTNF 105
>gi|258564550|ref|XP_002583020.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237908527|gb|EEP82928.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 125
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAREVL 67
S A F+ +EDHTL N +R L + V F GY +PHP + +RVQT G P VL
Sbjct: 26 STAIFTFNKEDHTLGNLIRSQLLKSQHVQFAGYKVPHPLVHKFMLRVQTDGTITPKDAVL 85
Query: 68 KDSCQELM 75
+C EL+
Sbjct: 86 -TACHELV 92
>gi|154340595|ref|XP_001566254.1| DNA-directed RNA polymerase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063573|emb|CAM39755.1| DNA-directed RNA polymerase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 137
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLK 68
+S A + + EDHTL N +R L Q+ VT GY+IPHP + ++ + VQ + D A E +
Sbjct: 45 ESTAVVTFSHEDHTLGNPLRHVLMQNVAVTSAGYAIPHPLEPKMLLHVQAS-DYAVEAVA 103
Query: 69 DSCQELMLMCRHVRSTFAK 87
+ L +C S+F K
Sbjct: 104 HGLERLAEICDDTISSFDK 122
>gi|365758451|gb|EHN00292.1| Rpb11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401842527|gb|EJT44698.1| RPB11-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 122
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTL N +R L D +V F Y + HP AR +R+QTT G ++ LK++C
Sbjct: 34 TFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNS 93
Query: 74 LMLMCRHVRSTF 85
++ +++ F
Sbjct: 94 IINKLGALKTNF 105
>gi|330929492|ref|XP_003302661.1| hypothetical protein PTT_14569 [Pyrenophora teres f. teres 0-1]
gi|311321850|gb|EFQ89261.1| hypothetical protein PTT_14569 [Pyrenophora teres f. teres 0-1]
Length = 151
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVL 67
+ A F+ +EDHTL N + L ++P + F Y +PHP A +RVQT G P V+
Sbjct: 50 NTAVFTFNKEDHTLGNLLSARLQKNPAILFAAYKVPHPLFATFELRVQTDGSITPKEAVI 109
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFRT 94
+ C V + +K D F+T
Sbjct: 110 R--------TCTEVITELSKLNDSFQT 128
>gi|6324569|ref|NP_014638.1| Rpb11p [Saccharomyces cerevisiae S288c]
gi|730605|sp|P38902.1|RPB11_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=B13.6; AltName: Full=DNA-directed RNA polymerase II
13.6 kDa polypeptide
gi|14278332|pdb|1I3Q|K Chain K, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278343|pdb|1I50|K Chain K, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278373|pdb|1I6H|K Chain K, Rna Polymerase Ii Elongation Complex
gi|20150721|pdb|1K83|K Chain K, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749626|pdb|1NIK|K Chain K, Wild Type Rna Polymerase Ii
gi|30749747|pdb|1NT9|K Chain K, Complete 12-Subunit Rna Polymerase Ii
gi|34810563|pdb|1PQV|K Chain K, Rna Polymerase Ii-Tfiis Complex
gi|46015423|pdb|1R5U|K Chain K, Rna Polymerase Ii Tfiib Complex
gi|46015788|pdb|1SFO|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965919|pdb|1R9S|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965931|pdb|1R9T|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966115|pdb|1TWA|K Chain K, Rna Polymerase Ii Complexed With Atp
gi|56966129|pdb|1TWC|K Chain K, Rna Polymerase Ii Complexed With Gtp
gi|56966139|pdb|1TWF|K Chain K, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966149|pdb|1TWG|K Chain K, Rna Polymerase Ii Complexed With Ctp
gi|56966159|pdb|1TWH|K Chain K, Rna Polymerase Ii Complexed With 2'datp
gi|58177174|pdb|1WCM|K Chain K, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679454|pdb|1Y1W|K Chain K, Complete Rna Polymerase Ii Elongation Complex
gi|61679471|pdb|1Y77|K Chain K, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679512|pdb|1Y1V|K Chain K, Refined Rna Polymerase Ii-tfiis Complex
gi|61679525|pdb|1Y1Y|K Chain K, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754253|pdb|2B63|K Chain K, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590864|pdb|2B8K|K Chain K, 12-Subunit Rna Polymerase Ii
gi|122920069|pdb|2E2H|K Chain K, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920084|pdb|2E2I|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920099|pdb|2E2J|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921038|pdb|2NVQ|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921074|pdb|2NVT|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921090|pdb|2NVX|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921105|pdb|2NVY|K Chain K, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921117|pdb|2NVZ|K Chain K, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104684|pdb|2JA5|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104699|pdb|2JA6|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104720|pdb|2JA7|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104732|pdb|2JA7|W Chain W, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104744|pdb|2JA8|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387192|pdb|2YU9|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877783|pdb|2R7Z|K Chain K, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172237|pdb|2R92|K Chain K, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172250|pdb|2R93|K Chain K, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613472|pdb|2VUM|K Chain K, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368742|pdb|3CQZ|K Chain K, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983600|pdb|3FKI|K Chain K, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781924|pdb|3GTG|K Chain K, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781937|pdb|3GTJ|K Chain K, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781950|pdb|3GTK|K Chain K, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781963|pdb|3GTL|K Chain K, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781976|pdb|3GTM|K Chain K, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781990|pdb|3GTO|K Chain K, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239782003|pdb|3GTP|K Chain K, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782016|pdb|3GTQ|K Chain K, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104521|pdb|3H3V|L Chain L, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839451|pdb|3HOU|K Chain K, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839466|pdb|3HOU|W Chain W, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839481|pdb|3HOV|K Chain K, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839496|pdb|3HOW|K Chain K, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839511|pdb|3HOX|K Chain K, Complete Rna Polymerase Ii Elongation Complex V
gi|254839526|pdb|3HOY|K Chain K, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839541|pdb|3HOZ|K Chain K, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471956|pdb|3I4M|K Chain K, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471971|pdb|3I4N|K Chain K, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618775|pdb|3K1F|K Chain K, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914560|pdb|3K7A|K Chain K, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982483|pdb|3M3Y|K Chain K, Rna Polymerase Ii Elongation Complex C
gi|295982496|pdb|3M4O|K Chain K, Rna Polymerase Ii Elongation Complex B
gi|325053973|pdb|3PO2|K Chain K, Arrested Rna Polymerase Ii Elongation Complex
gi|325053988|pdb|3PO3|K Chain K, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634548|pdb|3QT1|K Chain K, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197464|pdb|3RZD|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197476|pdb|3RZO|K Chain K, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197488|pdb|3S14|K Chain K, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197500|pdb|3S15|K Chain K, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197512|pdb|3S16|K Chain K, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197524|pdb|3S17|K Chain K, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197536|pdb|3S1M|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197548|pdb|3S1N|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197560|pdb|3S1Q|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197572|pdb|3S1R|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197584|pdb|3S2D|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781205|pdb|3S2H|K Chain K, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251643|pdb|3J0K|K Chain K, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380846|pdb|4A3C|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546300|pdb|4A3B|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546318|pdb|4A3D|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546335|pdb|4A3E|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546352|pdb|4A3F|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546369|pdb|4A3J|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546386|pdb|4A3K|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546402|pdb|4A3L|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546419|pdb|4A3M|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977889|pdb|4A3G|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977904|pdb|4A3I|K Chain K, Rna Polymerase Ii Binary Complex With Dna
gi|380764989|pdb|4A93|K Chain K, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145456|pdb|4BBR|K Chain K, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145469|pdb|4BBS|K Chain K, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|386198|gb|AAB27135.1| RNA polymerase II subunit RPB11 [Saccharomyces cerevisiae]
gi|1419769|emb|CAA99004.1| RPB11 [Saccharomyces cerevisiae]
gi|45269886|gb|AAS56324.1| YOL005C [Saccharomyces cerevisiae]
gi|151945625|gb|EDN63866.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190407337|gb|EDV10604.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
gi|256273996|gb|EEU08912.1| Rpb11p [Saccharomyces cerevisiae JAY291]
gi|285814885|tpg|DAA10778.1| TPA: Rpb11p [Saccharomyces cerevisiae S288c]
gi|323303058|gb|EGA56861.1| Rpb11p [Saccharomyces cerevisiae FostersB]
gi|323307116|gb|EGA60399.1| Rpb11p [Saccharomyces cerevisiae FostersO]
gi|323331712|gb|EGA73126.1| Rpb11p [Saccharomyces cerevisiae AWRI796]
gi|323335698|gb|EGA76981.1| Rpb11p [Saccharomyces cerevisiae Vin13]
gi|323352374|gb|EGA84909.1| Rpb11p [Saccharomyces cerevisiae VL3]
gi|349581161|dbj|GAA26319.1| K7_Rpb11p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763240|gb|EHN04770.1| Rpb11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296328|gb|EIW07430.1| Rpb11p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 120
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTL N +R L D +V F Y + HP AR +R+QTT G ++ LK++C
Sbjct: 34 TFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNS 93
Query: 74 LMLMCRHVRSTF 85
++ +++ F
Sbjct: 94 IINKLGALKTNF 105
>gi|119176958|ref|XP_001240328.1| DNA-directed RNA polymerase II [Coccidioides immitis RS]
gi|392867711|gb|EAS29036.2| DNA-directed RNA polymerase II [Coccidioides immitis RS]
Length = 128
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAREVL 67
S A F+ +EDHTL N +R L + V F GY +PHP + +RVQT G P VL
Sbjct: 29 STAIFTFNKEDHTLGNLIRAQLLKSQHVQFAGYKVPHPLVHKFILRVQTDGAITPKDAVL 88
Query: 68 KDSCQELM 75
+C EL+
Sbjct: 89 -TACHELV 95
>gi|399949657|gb|AFP65315.1| DNA-deirected RNA polymerases I and III 16kDa polypeptide
[Chroomonas mesostigmatica CCMP1168]
Length = 100
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT----TGDPAREVLKDS 70
+ EDHTL N +RF + +P V F GY++PHPS+ +N+++ T + +P LK+S
Sbjct: 18 TFYNEDHTLGNVLRFLIAGNPEVKFVGYNVPHPSEKIMNLKIVTNVSNSIEPIFLSLKNS 77
Query: 71 CQELML 76
+ +L
Sbjct: 78 SEMAVL 83
>gi|159471075|ref|XP_001693682.1| DNA-directed RNA polymerase II, 13.6 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158283185|gb|EDP08936.1| DNA-directed RNA polymerase II, 13.6 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 115
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG-----DPAREV 66
TF+ EDHT+ N +R L+ D F GY IPHP + + ++VQT G D
Sbjct: 31 GTFTFRSEDHTIGNLLRMQLHADKSTVFAGYRIPHPLEPVMVVKVQTNGTKSCEDAMMHA 90
Query: 67 LKDSCQELMLMC 78
L+D E +M
Sbjct: 91 LEDLANEYHIML 102
>gi|303316247|ref|XP_003068128.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240107804|gb|EER25983.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|320032518|gb|EFW14471.1| DNA-directed RNA polymerase II [Coccidioides posadasii str.
Silveira]
Length = 128
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAREVL 67
S A F+ +EDHTL N +R L + V F GY +PHP + +RVQT G P VL
Sbjct: 29 STAIFTFNKEDHTLGNLIRSQLLKSQHVQFAGYKVPHPLVHKFILRVQTDGAITPKDAVL 88
Query: 68 KDSCQELM 75
+C EL+
Sbjct: 89 -TACHELV 95
>gi|209879369|ref|XP_002141125.1| RNA polymerase II subunit RPB11 [Cryptosporidium muris RN66]
gi|209556731|gb|EEA06776.1| RNA polymerase II subunit RPB11, putative [Cryptosporidium muris
RN66]
Length = 121
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT--TGDPAREVLKD 69
+F + EDHTL N +R L +DP V F Y +PHP + V IR+QT T P +++
Sbjct: 36 GSFMIMLEDHTLGNLLRTQLLRDPSVIFAAYKVPHPLEPMVQIRIQTRETTTPF-VAMQN 94
Query: 70 SCQELMLMCRHVRSTFAKAVDD 91
+ Q ++ + V +TF A+ +
Sbjct: 95 AIQMILAETQTVANTFKDAMRN 116
>gi|390599050|gb|EIN08447.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 140
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
AT + ++DHTLAN +R L P+V F GY +PHP I++QT G +++ +
Sbjct: 31 ATIKIVKQDHTLANMIRAELLASPQVLFAGYKVPHPLQPYFLIKLQTDGSVTPTAIMESA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C +L+ + + F +
Sbjct: 91 CTKLIGQLVTLEAKFKR 107
>gi|392589040|gb|EIW78371.1| RBP11-like subunits of RNA polymerase, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 133
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
ATF + ++DHTL N +R + P+V F GY +PHP +++QT G + L+ +
Sbjct: 31 ATFKIVKQDHTLGNMIRAQVLSMPQVLFAGYKVPHPLQPYFLLKIQTDGSLTPQAALEQA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C +L+ + F +
Sbjct: 91 CTKLISTISTIEKKFKR 107
>gi|336364500|gb|EGN92857.1| hypothetical protein SERLA73DRAFT_190428 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388546|gb|EGO29690.1| hypothetical protein SERLADRAFT_457791 [Serpula lacrymans var.
lacrymans S7.9]
Length = 142
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-VLKDS 70
ATF + ++DHTL N VR + P+V F GY +PHP +++QT G + VL+ +
Sbjct: 31 ATFKIMKQDHTLGNMVRAYVLAMPQVLFAGYKVPHPLHPYFLLKIQTDGTVTPQVVLEQA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C +L+ + + F +
Sbjct: 91 CTKLIGSLSTLEAKFKR 107
>gi|401425126|ref|XP_003877048.1| DNA-directed RNA polymerase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493292|emb|CBZ28577.1| DNA-directed RNA polymerase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 137
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
++S A + + EDHTL N +R L Q+ VT GY+IPHP + ++ + VQ + D A E +
Sbjct: 44 NESTAVVTFSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLLHVQAS-DYAVEAV 102
Query: 68 KDSCQELMLMCRHVRSTF 85
+ L +C S+F
Sbjct: 103 AMGLERLAEICDDTISSF 120
>gi|366992780|ref|XP_003676155.1| hypothetical protein NCAS_0D02120 [Naumovozyma castellii CBS 4309]
gi|342302021|emb|CCC69793.1| hypothetical protein NCAS_0D02120 [Naumovozyma castellii CBS 4309]
Length = 122
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDS 70
+ +EDHTL N +R L D RV F Y + HP AR +R+QT G ++ LK++
Sbjct: 31 VVITFEKEDHTLGNLIRSELLNDSRVLFAAYKVEHPFFARFKLRIQTVEGYDPKDALKNA 90
Query: 71 CQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKID 104
C ++ S +F T +Q + D
Sbjct: 91 CNSII-------SKLGVLKGNFETEWNLQTLAAD 117
>gi|296413724|ref|XP_002836559.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630386|emb|CAZ80750.1| unnamed protein product [Tuber melanosporum]
Length = 119
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F+ +EDHTL N +R TL + V F Y +PHP + +RVQT + +E L +
Sbjct: 31 AIFTFNKEDHTLGNLLRATLLHNEHVVFSAYKVPHPLFPKFELRVQTDEETTPKEALLAA 90
Query: 71 CQELM 75
CQ L+
Sbjct: 91 CQSLI 95
>gi|413937800|gb|AFW72351.1| hypothetical protein ZEAMMB73_926131 [Zea mays]
Length = 120
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
A+F+ EDHT+ N +R L++DP V F GY +PHP ++ +R+ T
Sbjct: 31 ASFTDEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHT 77
>gi|301093050|ref|XP_002997374.1| DNA-directed RNA polymerase II subunit J [Phytophthora infestans
T30-4]
gi|262110772|gb|EEY68824.1| DNA-directed RNA polymerase II subunit J [Phytophthora infestans
T30-4]
Length = 119
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 10 SNA-TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVL 67
SNA F++ EDHT+ N +R L +DP VTF GY PHP + +RVQT E L
Sbjct: 28 SNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDITVRVQTNDASSPVEAL 87
Query: 68 KDSCQEL 74
+S +L
Sbjct: 88 ANSLDDL 94
>gi|255553542|ref|XP_002517812.1| DNA-directed RNA polymerase II 13.6 kD polypeptide, putative
[Ricinus communis]
gi|223543084|gb|EEF44619.1| DNA-directed RNA polymerase II 13.6 kD polypeptide, putative
[Ricinus communis]
Length = 156
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A+F++ EDHT+ N +R L++D V F GY +PHP ++ +R+ TT + + +
Sbjct: 31 ASFTVEREDHTIGNILRMQLHRDENVLFAGYRLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
Query: 71 CQELMLMCRHVRSTFAKAV 89
+L H++S F + +
Sbjct: 91 INDLDKELDHLKSAFEECL 109
>gi|342878460|gb|EGU79797.1| hypothetical protein FOXB_09656 [Fusarium oxysporum Fo5176]
Length = 136
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E F SN + F L +EDHTL N + L P V GY I HP+ + IRVQT
Sbjct: 28 IEEKVFSGMSNTSDFVLMKEDHTLGNLLSEHLKMHPNVYMAGYKIAHPNVPELFIRVQTD 87
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAK 87
G R+V C++L+ + F +
Sbjct: 88 GTITPRDVFTSVCEKLIKQLEMLHQEFTR 116
>gi|311259036|ref|XP_003127906.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Sus
scrofa]
Length = 140
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
F++ +EDHTL N ++ L +DP+V F G +PHP + ++ + VQTT D
Sbjct: 32 FTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPD 79
>gi|224103945|ref|XP_002313254.1| predicted protein [Populus trichocarpa]
gi|118484276|gb|ABK94017.1| unknown [Populus trichocarpa]
gi|222849662|gb|EEE87209.1| predicted protein [Populus trichocarpa]
Length = 116
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
A+F++ EDHT+ N +R L++D V F GY +PHP ++ +R+ TT
Sbjct: 31 ASFTVEREDHTIGNILRMQLHRDDNVLFAGYKLPHPLKYKIIVRIHTT 78
>gi|340914788|gb|EGS18129.1| hypothetical protein CTHT_0061440 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 146
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 7 GDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PARE 65
G + + F + +EDHT+ N + L Q P V GY I HP+ V +RVQT G RE
Sbjct: 35 GMANTSDFIILKEDHTIGNLLSEHLKQAPHVMMAGYKIGHPNVPEVLVRVQTDGTITPRE 94
Query: 66 VLKDSCQELMLMCRHVRSTFAK 87
L + C++L+ + F K
Sbjct: 95 ALVNVCKQLVAAYGQLGREFQK 116
>gi|126654283|ref|XP_001388406.1| RNA polymerase II [Cryptosporidium parvum Iowa II]
gi|126117499|gb|EAZ51599.1| RNA polymerase II, putative [Cryptosporidium parvum Iowa II]
Length = 115
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
+F + EDHTL N + L +DP V F GY +PHP + V IR+QT
Sbjct: 30 GSFMIMLEDHTLGNLITTQLLRDPNVIFAGYKVPHPLEPLVQIRIQT 76
>gi|448089577|ref|XP_004196845.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
gi|448093877|ref|XP_004197876.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
gi|359378267|emb|CCE84526.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
gi|359379298|emb|CCE83495.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
Length = 122
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A + EDHTLAN +R L +D +V F Y + HP A +R+QT D + RE L+++
Sbjct: 31 AIIKIEREDHTLANLLRAQLLKDEKVLFAAYKVEHPLFANFVLRIQTEDDYSPREALRNA 90
Query: 71 CQELMLMCRHVRSTF 85
C L+ +++ F
Sbjct: 91 CSALIGELDIIKTRF 105
>gi|407921830|gb|EKG14968.1| DNA-directed RNA polymerase Rpb11 13-16kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 121
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLK 68
+ A F+ +EDHTLAN + L++ V+F GY +PHP A +RV T G A +E +
Sbjct: 29 NTAIFTFNKEDHTLANLLTARLHKYKYVSFAGYRVPHPLFASFELRVGTDGTVAPKEAIV 88
Query: 69 DSCQELM 75
++C++++
Sbjct: 89 NACRDVV 95
>gi|302911227|ref|XP_003050446.1| hypothetical protein NECHADRAFT_84788 [Nectria haematococca mpVI
77-13-4]
gi|256731383|gb|EEU44733.1| hypothetical protein NECHADRAFT_84788 [Nectria haematococca mpVI
77-13-4]
Length = 136
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E F SN + F L +EDHTL N + L P V GY I HP+ + IRVQT
Sbjct: 28 IEEKVFSGMSNTSDFVLKKEDHTLGNLLSEHLKMHPNVYMAGYKIAHPNVPELFIRVQTD 87
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAK 87
G R+V C++L+ + F +
Sbjct: 88 GTITPRDVFTSVCEKLINQLEMLHQEFTR 116
>gi|50424419|ref|XP_460797.1| DEHA2F09944p [Debaryomyces hansenii CBS767]
gi|49656466|emb|CAG89138.1| DEHA2F09944p [Debaryomyces hansenii CBS767]
Length = 122
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A + EDHTL N +R L +D RV F Y + HP A +R+QT D + RE L+++
Sbjct: 31 ALIKIEREDHTLGNLIRAQLLKDERVLFAAYKVEHPLFANFVLRIQTEDDYSPREALRNA 90
Query: 71 CQELMLMCRHVRSTF 85
C L+ +++ F
Sbjct: 91 CSGLIGELDVIKTRF 105
>gi|320168334|gb|EFW45233.1| RNA polymerase II subunit [Capsaspora owczarzaki ATCC 30864]
Length = 121
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+ S A ++ +EDHTL N +R L +DP+V F GY +PHP ++ +RV T
Sbjct: 27 NPSAAVITVNKEDHTLGNLLRVQLLRDPKVLFSGYHVPHPLQSKFVLRVLTV 78
>gi|408388350|gb|EKJ68036.1| hypothetical protein FPSE_11847 [Fusarium pseudograminearum CS3096]
Length = 136
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E F SN + F L +EDHTL N + L P V GY I HP+ + IRVQT
Sbjct: 28 IEEKVFSGMSNTSDFVLMKEDHTLGNLLSEHLKMHPNVHMAGYKIAHPNVPELFIRVQTD 87
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAK 87
G R+V C++L+ + F +
Sbjct: 88 GTITPRDVFTSVCEKLINQLEMLHQEFTR 116
>gi|255712823|ref|XP_002552694.1| KLTH0C10934p [Lachancea thermotolerans]
gi|238934073|emb|CAR22256.1| KLTH0C10934p [Lachancea thermotolerans CBS 6340]
Length = 122
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTLAN +R L +D V F Y + HP A+ +R+QT G ++ LK++C
Sbjct: 34 TFEKEDHTLANLIRGELLEDKGVLFAAYKVEHPLFAQFKLRIQTVEGYDPKDALKNACNG 93
Query: 74 LMLMCRHVRSTF 85
++ ++S F
Sbjct: 94 IISKLGQLQSNF 105
>gi|444320463|ref|XP_004180888.1| hypothetical protein TBLA_0E03150 [Tetrapisispora blattae CBS 6284]
gi|387513931|emb|CCH61369.1| hypothetical protein TBLA_0E03150 [Tetrapisispora blattae CBS 6284]
Length = 118
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLK 68
+ + +EDHTL N ++ L DP+V F Y + HP AR +R+QT G ++ L+
Sbjct: 29 NTVVITFEKEDHTLGNLIKSELLHDPKVLFAAYKVEHPLFARFKMRIQTVEGYDPKDALR 88
Query: 69 DSCQELMLMCRHVRSTF 85
+C ++ +++ F
Sbjct: 89 KACNSIIKKLGILKTNF 105
>gi|323346625|gb|EGA80911.1| Rpb11p [Saccharomyces cerevisiae Lalvin QA23]
Length = 120
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTL N +R L D +V F Y + HP AR +R QTT G ++ LK++C
Sbjct: 34 TFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRXQTTEGYDPKDALKNACNS 93
Query: 74 LMLMCRHVRSTF 85
++ +++ F
Sbjct: 94 IINKLGALKTNF 105
>gi|50286733|ref|XP_445796.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525102|emb|CAG58715.1| unnamed protein product [Candida glabrata]
Length = 120
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTL N +R L D +V F Y + HP AR +R+QT G ++ L+++C
Sbjct: 34 TFEKEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRIQTVEGYDPKDALRNACSS 93
Query: 74 LMLMCRHVRSTF 85
++ ++S F
Sbjct: 94 IINKLGALKSNF 105
>gi|395862822|ref|XP_003803624.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB11-b1-like [Otolemur garnettii]
Length = 154
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPR----VTFCGYSIPHPSDARVNIRVQTTGD 61
F++ +EDHTL N ++ DP+ + F GY IPHP + ++NI VQTT D
Sbjct: 55 FTINKEDHTLGNIIKSASLXDPKSDTXLLFAGYKIPHPLEHKINIXVQTTPD 106
>gi|328869614|gb|EGG17991.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 1128
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
F++ +EDHTL N +R L DP V F GY +PHP + + I++QT
Sbjct: 33 FTILKEDHTLGNLIRMQLVGDPDVKFAGYRMPHPLEHNITIKIQT 77
>gi|25012186|gb|AAN71209.1| GM15177p [Drosophila melanogaster]
Length = 136
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 20/100 (20%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQ-------------------DPRVTFCGYSIPHPSDARV 52
A F++ +EDHTL N +R + Q DP V F GY +PHP + +
Sbjct: 31 AIFTINKEDHTLGNMIRKYVGQQARLITHEICILACSQLLKDPNVLFAGYKVPHPLEHKF 90
Query: 53 NIRVQTTGDPA-REVLKDSCQELMLMCRHVRSTFAKAVDD 91
IR+QTT D + +E ++ +L+ F A+ +
Sbjct: 91 VIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKDAIKE 130
>gi|212532477|ref|XP_002146395.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Talaromyces marneffei ATCC 18224]
gi|210071759|gb|EEA25848.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Talaromyces marneffei ATCC 18224]
Length = 128
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVL 67
S + F++ +EDH++ N +R L Q+ VTF Y IPHP ++ +RVQT G+ P +L
Sbjct: 29 STSIFTINKEDHSVGNLLRGRLLQNRHVTFAAYKIPHPLVHKLELRVQTDGEITPKDALL 88
Query: 68 ---KDSCQELMLMCRHVRSTF 85
D+ ++L + R F
Sbjct: 89 AACHDTVRDLGTLSREFTKEF 109
>gi|403216456|emb|CCK70953.1| hypothetical protein KNAG_0F02910 [Kazachstania naganishii CBS
8797]
Length = 122
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTL N +R L D +V F Y + HP AR +R+QT G ++ LK++C
Sbjct: 34 TFNKEDHTLGNLIRAELLNDSKVLFAAYKVEHPFFARFKLRIQTVEGYDPKDALKNACNG 93
Query: 74 LMLMCRHVRSTF 85
++ +++ F
Sbjct: 94 IINKLGILKTNF 105
>gi|50305029|ref|XP_452472.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641605|emb|CAH01323.1| KLLA0C06160p [Kluyveromyces lactis]
Length = 121
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTL N +R L +D V F Y + HP A+ +R+QT G ++ LK++C
Sbjct: 34 TFEKEDHTLGNLIRAELLEDEGVLFAAYKVEHPLFAKFKMRIQTVEGYDPKDALKNACNS 93
Query: 74 LMLMCRHVRSTF 85
++ ++S F
Sbjct: 94 IINKLAQLQSNF 105
>gi|340522866|gb|EGR53099.1| predicted protein [Trichoderma reesei QM6a]
Length = 128
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E + SN + F L +EDHTL N + L P V GY I HP+ + IRVQT
Sbjct: 19 IEEKVYSGMSNTSDFLLKKEDHTLGNLLSEHLKAHPNVYMAGYKIAHPNVPELYIRVQTD 78
Query: 60 GDPA-REVLKDSCQELMLMCRHVRSTFAK 87
G + R+V C++L+ + F +
Sbjct: 79 GTISPRDVFTSVCEKLINQLEMLYQEFTR 107
>gi|116198139|ref|XP_001224881.1| hypothetical protein CHGG_07225 [Chaetomium globosum CBS 148.51]
gi|88178504|gb|EAQ85972.1| hypothetical protein CHGG_07225 [Chaetomium globosum CBS 148.51]
Length = 736
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F + +EDHTL N + L P V Y I HP+ V +RVQT G RE L C+
Sbjct: 7 FLMLKEDHTLGNLLSVYLKMAPHVMMAAYKIGHPNVPEVQLRVQTDGTITPREALMTVCK 66
Query: 73 ELMLMCRHVRSTFAK 87
+L+ M + F K
Sbjct: 67 QLVAMYGQLGREFQK 81
>gi|358392256|gb|EHK41660.1| hypothetical protein TRIATDRAFT_302116 [Trichoderma atroviride IMI
206040]
Length = 128
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E + SN + F L +EDHTL N + L P V GY I HP+ + IRVQT
Sbjct: 19 IEEKVYSGMSNTSDFVLKKEDHTLGNLLAEHLKAHPNVYMAGYKIAHPNVPELYIRVQTD 78
Query: 60 GDPA-REVLKDSCQELMLMCRHVRSTFAK 87
G + R+V C++L+ + F +
Sbjct: 79 GTISPRDVFTSVCEKLINQLEMLYQEFTR 107
>gi|344233314|gb|EGV65187.1| RBP11-like subunits of RNA polymerase [Candida tenuis ATCC 10573]
gi|344233315|gb|EGV65188.1| hypothetical protein CANTEDRAFT_113704 [Candida tenuis ATCC 10573]
Length = 121
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
A + +EDHTLAN +R L +D RV F Y + HP A +R+QT + +E L+++
Sbjct: 31 AIIKIEKEDHTLANLLRAQLLKDERVLFAAYKVEHPLFANFVLRIQTEDNYTPKEALRNA 90
Query: 71 CQELMLMCRHVRSTF 85
C L+ +++ F
Sbjct: 91 CTNLIGELDLIKNKF 105
>gi|408395904|gb|EKJ75076.1| hypothetical protein FPSE_04788 [Fusarium pseudograminearum CS3096]
Length = 127
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 34 DPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELMLMCRHVRSTF 85
DP V FC YSIPHPS+ ++NIR+QT A + LK ++ +C V F
Sbjct: 61 DPDVEFCAYSIPHPSEPKMNIRIQTYNGTAVDALKKGLVDIQEVCDVVADEF 112
>gi|46124881|ref|XP_386994.1| hypothetical protein FG06818.1 [Gibberella zeae PH-1]
Length = 239
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E F SN + F L +EDHTL N + L P V GY I HP+ + IRVQT
Sbjct: 131 IEEKVFSGMSNTSDFVLMKEDHTLGNLLSEHLKMHPNVHMAGYKIAHPNVPELFIRVQTD 190
Query: 60 GD-PAREVLKDSCQELM 75
G R+V C++L+
Sbjct: 191 GTITPRDVFTSVCEKLI 207
>gi|170099820|ref|XP_001881128.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643807|gb|EDR08058.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 150
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
AT + ++DHTL N +R L P++ F GY +PHP I++QT G + +L +
Sbjct: 31 ATIKIVKQDHTLGNMLRAQLLSMPQILFAGYKVPHPLHPYFLIKIQTDGTITPQAILHQA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C +L+ + + F +
Sbjct: 91 CTKLIGTMSSLETKFNR 107
>gi|156844441|ref|XP_001645283.1| hypothetical protein Kpol_1037p21 [Vanderwaltozyma polyspora DSM
70294]
gi|156115943|gb|EDO17425.1| hypothetical protein Kpol_1037p21 [Vanderwaltozyma polyspora DSM
70294]
Length = 120
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAREVLKDSCQ 72
+ +EDHTL N +R L D +V F Y + HP AR +R+QT DP ++ LK++C
Sbjct: 34 TFEKEDHTLGNLIRSELLNDSKVLFAAYKVEHPLFARFKLRIQTVENYDP-KDALKNACN 92
Query: 73 ELMLMCRHVRSTF 85
++ +++ F
Sbjct: 93 NIINKLGILKTNF 105
>gi|310792346|gb|EFQ27873.1| hypothetical protein GLRG_03017 [Glomerella graminicola M1.001]
Length = 125
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E F SN + F + +EDHTL N + L V GY I HP+ + IRVQT
Sbjct: 19 IEEKVFSGMSNTSDFIIKKEDHTLGNLLSEHLKMHKNVLMAGYKISHPNVPEMFIRVQTD 78
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
G A+E L ++LM H+ F + + R E
Sbjct: 79 GSITAKEALVQVIKKLMQDLSHLSREFTREFELRRMVE 116
>gi|367017037|ref|XP_003683017.1| hypothetical protein TDEL_0G04390 [Torulaspora delbrueckii]
gi|359750680|emb|CCE93806.1| hypothetical protein TDEL_0G04390 [Torulaspora delbrueckii]
Length = 122
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDS 70
+ +EDHTL N +R L D +V F Y + HP AR +R+QT G ++ LK++
Sbjct: 31 VVITFEKEDHTLGNLIRSELLNDTKVLFAAYKVEHPLFARFKMRIQTVEGYDPKDALKNA 90
Query: 71 CQELMLMCRHVRSTF 85
C ++ +++ F
Sbjct: 91 CNGIINKLAVLKTNF 105
>gi|380474439|emb|CCF45777.1| hypothetical protein CH063_03693 [Colletotrichum higginsianum]
Length = 125
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E F SN + F + +EDHTL N + L V GY I HP+ + IRVQT
Sbjct: 19 IEEKVFSGMSNTSDFVIKKEDHTLGNLLSEHLKAHKNVLMAGYKIAHPNVPEMFIRVQTD 78
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
G A+E L ++LM H+ F + + R E
Sbjct: 79 GSITAKEALVQVIKKLMQDLSHLSREFTREFELRRMVE 116
>gi|348669578|gb|EGZ09400.1| hypothetical protein PHYSODRAFT_523164 [Phytophthora sojae]
Length = 119
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 10 SNA-TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVL 67
SNA F++ EDHT+ N +R L +DP V F GY PHP + +RVQT E L
Sbjct: 28 SNAGKFTILREDHTMGNLIRMQLLRDPNVMFSGYRHPHPLIHDITVRVQTNDASSPVEAL 87
Query: 68 KDSCQEL 74
+S +L
Sbjct: 88 ANSLDDL 94
>gi|322696273|gb|EFY88068.1| DNA-directed RNA polymerase II subunit RPB11 [Metarhizium acridum
CQMa 102]
Length = 128
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E + SN + F L +EDHTL N + + P V GY + HP+ ++ IRVQT
Sbjct: 19 IEEKVYSGMSNTSDFILNKEDHTLGNLLSEHIKAHPNVYMAGYKLGHPNVPQLFIRVQTD 78
Query: 60 GDPA-REVLKDSCQELMLMCRHVRSTFAKAVD 90
G REV C++L+ + F + +
Sbjct: 79 GTKTPREVFTAVCEKLINQLESLHQEFTREWE 110
>gi|322704990|gb|EFY96579.1| DNA-directed RNA polymerase II subunit RPB11 [Metarhizium
anisopliae ARSEF 23]
Length = 128
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E + SN + F L +EDHTL N + + P V GY + HP+ ++ IRVQT
Sbjct: 19 IEEKVYSGMSNTSDFILNKEDHTLGNLLSEHIKAHPNVYMAGYKLGHPNVPQLFIRVQTD 78
Query: 60 GDPA-REVLKDSCQELMLMCRHVRSTFAKAVD 90
G REV C++L+ + F + +
Sbjct: 79 GTKTPREVFTAVCEKLINQLESLHQEFTREWE 110
>gi|356516832|ref|XP_003527097.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Glycine max]
Length = 90
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
A+F++ E+HT+ N +R L++DP V F GY +PHP ++ +R Q
Sbjct: 31 ASFTIEREEHTIDNILRMQLHRDPNVLFVGYKLPHPLQYKIIVREQV 77
>gi|400596490|gb|EJP64261.1| DNA-directed RNA polymerase 13.3K chain [Beauveria bassiana ARSEF
2860]
Length = 128
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E + SN + F L +EDHTL N + L P V GY + HP+ + IRVQT
Sbjct: 19 IEEKVYSGMSNTSDFLLKKEDHTLGNLLSEHLKLHPNVLMAGYKLGHPNVPELFIRVQTD 78
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAK 87
G +R+V C++L+ + F +
Sbjct: 79 GTVTSRDVFTSVCEKLINQLEMLHQKFTR 107
>gi|413937801|gb|AFW72352.1| hypothetical protein ZEAMMB73_926131 [Zea mays]
Length = 75
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRV 56
A+F+ EDHT+ N +R L++DP V F GY +PHP ++ +RV
Sbjct: 31 ASFTDEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRV 75
>gi|346974639|gb|EGY18091.1| DNA-directed RNA polymerase II [Verticillium dahliae VdLs.17]
Length = 151
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E + SN + F + +EDHT+ N + L V GY IPHP+ + + IRVQT
Sbjct: 44 IEEKPYAGMSNTSDFVIKKEDHTVGNLISEHLKMHQHVLMAGYKIPHPNVSEMFIRVQTD 103
Query: 60 G-----DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQ 99
G D EV+KD LM H+ F + + R E Q
Sbjct: 104 GTITPKDAVTEVIKD----LMKDFSHLAQEFIREYELRRVVEARQ 144
>gi|402471533|gb|EJW05250.1| hypothetical protein EDEG_00715 [Edhazardia aedis USNM 41457]
Length = 107
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
+++T + +EDHTL N +R+ + ++ V GYSIPHPS+ + +++Q
Sbjct: 16 NDSTVEVIDEDHTLLNPLRYMITKNDHVELVGYSIPHPSERKAQLKIQ 63
>gi|443717012|gb|ELU08251.1| hypothetical protein CAPTEDRAFT_97316 [Capitella teleta]
Length = 64
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 37 VTFCGYSIPHPSDARVNIRVQTTGD---PAREVLKDSCQELMLMCRHVRSTF 85
V FCGYS+PHPS+ ++N+R+QT G + VL+ +L + +HV TF
Sbjct: 8 VEFCGYSVPHPSETKINLRIQTKGTNRVISMSVLEKGLNDLKKVSKHVLDTF 59
>gi|358389646|gb|EHK27238.1| hypothetical protein TRIVIDRAFT_63005 [Trichoderma virens Gv29-8]
Length = 126
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E + SN + F L +EDHTL N + + P V GY I HP+ + IRVQT
Sbjct: 19 IEEKVYSGMSNTSDFILKKEDHTLGNLLAEHIKAHPNVYMAGYKIAHPNVPELYIRVQTD 78
Query: 60 GDPA-REVLKDSCQELMLMCRHVRSTFAK 87
G + R+V C++L+ + F +
Sbjct: 79 GTISPRDVFTSVCEKLINQLEMLYQEFTR 107
>gi|160331703|ref|XP_001712558.1| rpc9 [Hemiselmis andersenii]
gi|159766007|gb|ABW98233.1| rpc9 [Hemiselmis andersenii]
Length = 100
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG----DPAREVLKDS 70
S EDHTL N +R + +P + + GY+IPHPS+ +N+++ ++ +P LK+S
Sbjct: 18 SFYNEDHTLGNILRTVIEGNPNIDYVGYNIPHPSENIMNLKISSSKFDSLEPFILGLKNS 77
Query: 71 CQELMLM 77
+ +L
Sbjct: 78 GELFVLF 84
>gi|389623207|ref|XP_003709257.1| hypothetical protein MGG_02463 [Magnaporthe oryzae 70-15]
gi|351648786|gb|EHA56645.1| hypothetical protein MGG_02463 [Magnaporthe oryzae 70-15]
Length = 130
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F+ +EDHTL N + L Q P V GY + HP+ +R+QT G + L D+C+
Sbjct: 33 FTFKKEDHTLGNMLTEHLKQHPNVLMAGYKVSHPNVPEFFLRIQTDGKVTPKACLLDACR 92
Query: 73 ELMLMCRHVRSTFAKAVD 90
++ +R+ F + +
Sbjct: 93 TILHSLGQIRTEFTREFE 110
>gi|169851088|ref|XP_001832235.1| DNA-directed RNA polymerase II [Coprinopsis cinerea okayama7#130]
gi|116506713|gb|EAU89608.1| DNA-directed RNA polymerase II [Coprinopsis cinerea okayama7#130]
Length = 144
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
AT + ++DHTL N +R L P V F GY +PHP ++VQT G + ++ +
Sbjct: 31 ATIKVVKQDHTLGNMLRSQLLAMPEVLFAGYKVPHPLHPYFIVKVQTDGSITPQAAVEAA 90
Query: 71 CQELMLMCRHVRSTFAK--AVDDFRTSEKVQA 100
C +L+ V F + + D + E QA
Sbjct: 91 CTKLIATINTVAQKFKREFSYKDSTSGEGAQA 122
>gi|440465860|gb|ELQ35160.1| hypothetical protein OOU_Y34scaffold00725g18 [Magnaporthe oryzae
Y34]
gi|440486473|gb|ELQ66334.1| hypothetical protein OOW_P131scaffold00400g21 [Magnaporthe oryzae
P131]
Length = 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F+ +EDHTL N + L Q P V GY + HP+ +R+QT G + L D+C+
Sbjct: 73 FTFKKEDHTLGNMLTEHLKQHPNVLMAGYKVSHPNVPEFFLRIQTDGKVTPKACLLDACR 132
Query: 73 ELMLMCRHVRSTFAKAVD 90
++ +R+ F + +
Sbjct: 133 TILHSLGQIRTEFTREFE 150
>gi|449018281|dbj|BAM81683.1| RNA polymerase II subunit [Cyanidioschyzon merolae strain 10D]
Length = 133
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
A+F + EDHTLANA+R L +D V F Y +PHP + V ++VQT
Sbjct: 34 ASFVIEREDHTLANALRAQLLRDRNVLFAAYRVPHPLEHHVILKVQT 80
>gi|294883186|ref|XP_002769975.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239873898|gb|EER02672.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 149
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVL 67
+ TF++ EDHT A+A+R L ++ +V F GY +PHP + ++ +RVQ T P E +
Sbjct: 46 NTGTFTIWLEDHTAAHALRSELLRNRQVKFAGYKVPHPLENKLLMRVQVTSQTTPV-EAM 104
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFR 93
K++ + L + F +++ ++
Sbjct: 105 KEALKSLRSKGDQLEKEFDRSLKAYQ 130
>gi|413937799|gb|AFW72350.1| hypothetical protein ZEAMMB73_315029 [Zea mays]
Length = 75
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRV 56
A+F++ DHT+ N +R L++DP V F GY +PHP ++ +RV
Sbjct: 31 ASFTVERVDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRV 75
>gi|294948044|ref|XP_002785588.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239899567|gb|EER17384.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 149
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVL 67
+ TF++ EDHT A+A+R L ++ +V F GY +PHP + ++ +RVQ T P E +
Sbjct: 46 NTGTFTIWLEDHTAAHALRSELLRNRQVKFAGYKVPHPLENKLLMRVQVTSQTTPV-EAM 104
Query: 68 KDSCQELMLMCRHVRSTFAKAVDDFR 93
K++ + L + F +++ ++
Sbjct: 105 KEALKSLRSKGDQLEKEFDRSLKAYQ 130
>gi|399217331|emb|CCF74218.1| unnamed protein product [Babesia microti strain RI]
Length = 116
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
TF + EDHT+ ++ LN D VTF GY IPHP ++ + +RV+T
Sbjct: 38 GTFIIHLEDHTMGALIKSQLNLDENVTFVGYRIPHPLESLLELRVKT 84
>gi|422293772|gb|EKU21072.1| DNA-directed RNA polymerase II subunit RPB11 [Nannochloropsis
gaditana CCMP526]
Length = 126
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
++ T + +EDHT+ N +R L +D +V F GY PHP ++ +RVQT
Sbjct: 31 NSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQT 79
>gi|281203019|gb|EFA77220.1| hypothetical protein PPL_12430 [Polysphondylium pallidum PN500]
Length = 1177
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
F++ +EDHT+ N +R L DP + F GY +PHP + + I++QT
Sbjct: 50 FTILKEDHTVGNLIRMQLVGDPDIKFAGYRMPHPLEHNIAIKIQT 94
>gi|209731212|gb|ACI66475.1| DNA-directed RNA polymerase II subunit RPB11 [Salmo salar]
Length = 128
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E + SN + F L +EDHTL N + L P V GY + HP+ ++ IR+QT
Sbjct: 19 IEEKVYSGMSNTSDFVLNKEDHTLGNLLAEHLKAHPNVYMAGYKLGHPNVPQLFIRLQTD 78
Query: 60 GDPA-REVLKDSCQELMLMCRHVRSTFAKAVD 90
G R+V C++L+ + F + +
Sbjct: 79 GTKTPRDVFTSVCEKLINQLESLHQEFTREWE 110
>gi|367005132|ref|XP_003687298.1| hypothetical protein TPHA_0J00410 [Tetrapisispora phaffii CBS 4417]
gi|357525602|emb|CCE64864.1| hypothetical protein TPHA_0J00410 [Tetrapisispora phaffii CBS 4417]
Length = 120
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT--TGDPAREVLKDSCQ 72
+ +EDHTL N +R L D +V F Y + HP AR +R+QT DP ++ LK +C
Sbjct: 34 TFEKEDHTLGNLIRNELLNDEKVLFAAYKVEHPLFARFKLRIQTEENYDP-KDALKMACN 92
Query: 73 ELMLMCRHVRSTF 85
++ +++ F
Sbjct: 93 NIINKLGILKTNF 105
>gi|334185913|ref|NP_001190064.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis
thaliana]
gi|332645369|gb|AEE78890.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis
thaliana]
Length = 146
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIR 55
A+F++ EDHT+ N VR L++D V F GY +PHP ++ +R
Sbjct: 31 ASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR 74
>gi|449019035|dbj|BAM82437.1| RNA polymerase I, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 117
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREV 66
D++ +L E HTL NA+R+ L ++P V GY+IPHPS+ + + V + G A +
Sbjct: 32 DRTELVLTLRGEGHTLGNALRYMLTREPGVQQVGYTIPHPSEDCLKLYVVSKPGSRALDS 91
Query: 67 LKDSCQELMLMCRHVRSTFAKA 88
+K + L +C V + +A
Sbjct: 92 VKLALFHLTQLCDIVGEKYEEA 113
>gi|323452227|gb|EGB08102.1| hypothetical protein AURANDRAFT_26699 [Aureococcus anophagefferens]
Length = 118
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG------DPARE 65
TF++ +EDHT+ N +R + + P F GY +PHP +++QTT +
Sbjct: 31 GTFTINKEDHTVGNLLRMQILRSPDTKFAGYQLPHPLMNECRVKIQTTSANLTPIGAFQR 90
Query: 66 VLKDSCQELMLMCRHVRSTFAK 87
++D E+ ++ R+ R AK
Sbjct: 91 AIEDLQSEMDILDRNFREQVAK 112
>gi|325193331|emb|CCA27671.1| DNAdirected RNA polymerase II subunit J putative [Albugo
laibachii Nc14]
Length = 120
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
F++ EDHT+ N +R +DP VTF GY PHP + + +R+QT
Sbjct: 33 FTILREDHTIGNLIRMQSLRDPNVTFSGYRHPHPLNHDIVVRIQT 77
>gi|255953613|ref|XP_002567559.1| Pc21g05130 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589270|emb|CAP95410.1| Pc21g05130 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 128
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S A F+ +EDHTL N +R L + V F Y +PHP +RVQT G+ R+ +
Sbjct: 29 SAAIFTFHKEDHTLGNMLRQRLLKTAHVIFAAYRVPHPLTPEFQLRVQTDGEITPRQAVI 88
Query: 69 DSCQELM 75
++ Q L+
Sbjct: 89 NASQALI 95
>gi|378725610|gb|EHY52069.1| DNA-directed RNA polymerase II subunit J [Exophiala dermatitidis
NIH/UT8656]
Length = 269
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVL---K 68
F +EDHTL NA+ L+++ VT+ Y +PHP AR +R+QT G+ P +L +
Sbjct: 178 FVYNKEDHTLGNALVDQLHKNSHVTYAAYRVPHPLFARFELRIQTDGEITPKEALLAASR 237
Query: 69 DSCQELMLM 77
D +EL ++
Sbjct: 238 DVIRELEVI 246
>gi|402081162|gb|EJT76307.1| hypothetical protein GGTG_06227 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 130
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREV-LKDSCQ 72
F+ +EDHTL N + L Q P V GY + HP+ +R+QT G +V L ++C+
Sbjct: 33 FTFMKEDHTLGNLLCEHLKQQPNVLMAGYKVGHPNVPEFFLRIQTDGKVTPKVCLVEACR 92
Query: 73 ELMLMCRHVRSTFAKAVD 90
++ + + S F + +
Sbjct: 93 TIVQLLSQISSQFTREFE 110
>gi|425766844|gb|EKV05438.1| hypothetical protein PDIP_82960 [Penicillium digitatum Pd1]
gi|425780180|gb|EKV18198.1| hypothetical protein PDIG_11460 [Penicillium digitatum PHI26]
Length = 127
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVL 67
S A F+ +EDHTL N +R L + V F Y +PHP +R+QT G+ P + V+
Sbjct: 29 SAAIFTFRKEDHTLGNMLRHRLLKTAHVIFAAYRVPHPLTPEFQLRIQTDGEVTPRQAVI 88
Query: 68 KDS---CQELMLMCR 79
S ++L ++ R
Sbjct: 89 NASEALIKDLGILSR 103
>gi|50551669|ref|XP_503309.1| YALI0D26301p [Yarrowia lipolytica]
gi|49649177|emb|CAG81515.1| YALI0D26301p [Yarrowia lipolytica CLIB122]
Length = 117
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A +EDHTL N +R L D RV F Y + HP A +R+QT D + +E L ++
Sbjct: 31 ANIKFEKEDHTLGNLLRSQLLHDSRVIFAAYKVEHPLFANFVLRIQTEDDYSPQEALTNA 90
Query: 71 CQELMLMCRHVRSTFAK 87
C L+ ++ F +
Sbjct: 91 CNALIRQLSDLQEKFQR 107
>gi|365984675|ref|XP_003669170.1| hypothetical protein NDAI_0C02670 [Naumovozyma dairenensis CBS 421]
gi|343767938|emb|CCD23927.1| hypothetical protein NDAI_0C02670 [Naumovozyma dairenensis CBS 421]
Length = 122
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTL N +R L D +V F Y + HP A +R+QT G + LK++C
Sbjct: 34 TFQKEDHTLGNLIRSELLNDGKVLFAAYKVEHPFFANFKLRIQTVEGYDPKLALKNACNN 93
Query: 74 LMLMCRHVRSTF 85
++ +++ F
Sbjct: 94 IINKLGILKTNF 105
>gi|324515757|gb|ADY46304.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Ascaris
suum]
Length = 119
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARV 52
D +N T L EEDHT+ N+++ L + V FCGY++PHP + ++
Sbjct: 24 DPTNLTVILHEEDHTIGNSLKHILCKMAEVEFCGYNVPHPLEDKI 68
>gi|115394874|ref|XP_001213448.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193017|gb|EAU34717.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1608
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S+A F+ +EDHTL N + L Q V F Y +PHP D + +RVQT G+ ++ +
Sbjct: 66 SSAIFTFNKEDHTLGNLLSSRLLQSSHVLFAAYKVPHPLDPKFLLRVQTDGEITPKDAVI 125
Query: 69 DSCQELM 75
+C EL+
Sbjct: 126 AACHELV 132
>gi|218185463|gb|EEC67890.1| hypothetical protein OsI_35558 [Oryza sativa Indica Group]
Length = 170
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQD 34
MEHG D S +TFS+ EE+HTLAN RF LNQ+
Sbjct: 137 MEHGTVEDSSASTFSIAEEEHTLANPARFVLNQE 170
>gi|77549279|gb|ABA92076.1| hypothetical protein LOC_Os11g11130 [Oryza sativa Japonica Group]
gi|125576615|gb|EAZ17837.1| hypothetical protein OsJ_33385 [Oryza sativa Japonica Group]
Length = 191
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQD 34
MEHG D S +TFS+ EE+HTLAN RF LNQ+
Sbjct: 158 MEHGTVEDSSASTFSIAEEEHTLANPARFVLNQE 191
>gi|320582021|gb|EFW96240.1| RNA polymerase II core subunit [Ogataea parapolymorpha DL-1]
Length = 107
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDSCQELMLM 77
EDHTL N ++ L DP+V F Y + HP A +R+QT G R LK++C L+
Sbjct: 22 EDHTLGNLLKQELANDPQVLFVAYKVEHPLFANFVMRLQTEEGYKPRIALKNACTRLI-- 79
Query: 78 CRHVRSTFAKAVDDFRTSEKVQAM 101
S D F+ +++A+
Sbjct: 80 -----SKLGILNDKFKREWELKAL 98
>gi|346325285|gb|EGX94882.1| DNA-directed RNA polymerase II subunit RPB11a, putative [Cordyceps
militaris CM01]
Length = 134
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
+E + SN + F L +EDHTL + + L P V GY + HP+ + IRVQT
Sbjct: 25 IEEKIYSGMSNTSDFLLKKEDHTLGHLLSEHLKMHPNVLMAGYKLGHPNVPELFIRVQTD 84
Query: 60 GD-PAREVLKDSCQELMLMCRHVRSTFAK 87
G +R+V C++L+ + F +
Sbjct: 85 GTVTSRDVFTAVCEKLINQLEMLHQKFTR 113
>gi|430814459|emb|CCJ28306.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1377
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPS-DARVNIRVQT-TGDPAREVLKD 69
A ++ EDHTL N +R L QD RV F GY + HP + + +RVQT G R+ + +
Sbjct: 1287 ANITVLNEDHTLGNMLRAQLLQDERVLFAGYRVSHPILEHKFVLRVQTEEGYEPRDAVSN 1346
Query: 70 SCQELMLMCRHVRSTFAK 87
+ ++L+ +R+ F +
Sbjct: 1347 ASRDLLYQLTQLRNNFER 1364
>gi|238579202|ref|XP_002388973.1| hypothetical protein MPER_11952 [Moniliophthora perniciosa FA553]
gi|215450762|gb|EEB89903.1| hypothetical protein MPER_11952 [Moniliophthora perniciosa FA553]
Length = 151
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-VLKDS 70
T + ++DHTLA +R L P+V F GY +PHP I++QT G E +L+ +
Sbjct: 31 GTIKIVKQDHTLAGMLRAQLLSMPQVLFAGYKVPHPLHPYFIIKIQTDGSITPEAILEQA 90
Query: 71 CQELMLMCRHVRSTFAK 87
+++ + + F +
Sbjct: 91 ALKVIGTLASLEAKFKR 107
>gi|315230251|ref|YP_004070687.1| DNA-directed RNA polymerase subunit L [Thermococcus barophilus
MP]
gi|315183279|gb|ADT83464.1| DNA-directed RNA polymerase subunit L [Thermococcus barophilus
MP]
Length = 95
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTGDPARE-VLKDS 70
F L EDHT AN + L+++ VTF GY+I HP + + RV T G E L+++
Sbjct: 15 FYLVGEDHTFANLLNEVLHENKHVTFAGYTIEHPILTARKPKFRVVTDGKITPEKALEEA 74
Query: 71 CQELMLMCRHVRSTFAKAV 89
Q++ + V + KAV
Sbjct: 75 AQKIFDRAKEVLEAWEKAV 93
>gi|170586962|ref|XP_001898248.1| RNA polymerase II. [Brugia malayi]
gi|158594643|gb|EDP33227.1| RNA polymerase II., putative [Brugia malayi]
Length = 133
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 12 ATFSLTEEDHTLANAVR----------------FTLNQDPRVTFCGYSIPHPSDARVNIR 55
A F++ +EDHT+ N ++ L +DP+V F GY PHP + + +R
Sbjct: 31 AIFTVNKEDHTIGNLLKQFAAKIFHKSYFGTFCSQLLKDPQVLFAGYKCPHPLEHKFILR 90
Query: 56 VQTTGDPARE-VLKDSCQELMLMCRHVRSTFAKAVDDFR 93
VQTT D E L + +LM F +A+ + R
Sbjct: 91 VQTTSDTTPEDALTSAITDLMAELSLFEERFREAIKERR 129
>gi|225708772|gb|ACO10232.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus
rogercresseyi]
Length = 57
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 39 FCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAV 89
FCGYSIPHP++ ++ +R+QT PA++ L+ ++L MC V S F A+
Sbjct: 4 FCGYSIPHPAEDQMLLRIQTVSSVPAQDALRRGLEDLKDMCSVVSSKFNSAL 55
>gi|169601826|ref|XP_001794335.1| hypothetical protein SNOG_03789 [Phaeosphaeria nodorum SN15]
gi|160706019|gb|EAT88994.2| hypothetical protein SNOG_03789 [Phaeosphaeria nodorum SN15]
Length = 203
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 6 FGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
G + F+ +EDHTL N + L + P +TF Y +PHP A +RV T G
Sbjct: 98 LGVPNTGIFTFNKEDHTLGNLISQRLLKYPYITFSAYKVPHPLFATFELRVSTDG 152
>gi|308163296|gb|EFO65646.1| RNA polymerase II subunit Rpb11 [Giardia lamblia P15]
Length = 131
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
+E G + F + +D+T+ + +R L P+VTF G PHP ++++ IR+QT
Sbjct: 21 LEVYKIGTANALEFQIPYQDYTIGHILRKELLSMPQVTFAGMKTPHPLESKIVIRLQTN- 79
Query: 61 DPAREVLKDSCQELMLMCRH------------VRSTFAKAVDDF 92
+ L D+ Q C ++ TF AVDD+
Sbjct: 80 --SSGFLSDTIQATPENCFQSALTKITESMELIKKTFMAAVDDY 121
>gi|145487466|ref|XP_001429738.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124396832|emb|CAK62340.1| unnamed protein product [Paramecium tetraurelia]
Length = 129
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAREVLKDSCQELML 76
EDHT+ N R L + VTF GY HP + I+VQT G P D+ Q
Sbjct: 46 EDHTIGNLTRMNLLKQKEVTFSGYRQIHPLQHTIEIKVQTNGSIKPY-----DAIQ---- 96
Query: 77 MCRHVRSTFAKAVDDFRTSEKVQAMKIDSKE 107
TF D+F+ E+ A K+ KE
Sbjct: 97 ------KTFQDLSDEFKNLEEEWARKVAEKE 121
>gi|323452880|gb|EGB08753.1| hypothetical protein AURANDRAFT_25751 [Aureococcus anophagefferens]
Length = 136
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAR--EVLKD 69
TF++ +E HT+ + ++ + ++ +V +CGY +PHP + ++VQTT A V+
Sbjct: 31 GTFTIAKETHTVGHLLQMQVLRNNQVRYCGYKMPHPLQNSMLVKVQTTTSKATPVAVVGA 90
Query: 70 SCQELMLMCRHVRSTFAKAVDD 91
+ EL C + +F AV +
Sbjct: 91 ALAELQSECEVLDRSFRDAVSE 112
>gi|123508377|ref|XP_001329625.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121912671|gb|EAY17490.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 124
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG---------DPA 63
TF++ +EDHTL N + L + R+ F GY I HP+ + IRV+ + DPA
Sbjct: 37 TFTVQKEDHTLGNLLTDQLLTENRILFAGYRIEHPTKDLIKIRVKASQNVNHPKELIDPA 96
Query: 64 REVLK 68
E LK
Sbjct: 97 IEALK 101
>gi|18976422|ref|NP_577779.1| DNA-directed RNA polymerase subunit L [Pyrococcus furiosus DSM
3638]
gi|397652234|ref|YP_006492815.1| DNA-directed RNA polymerase subunit L [Pyrococcus furiosus COM1]
gi|23822104|sp|Q8U4N1.1|RPOL_PYRFU RecName: Full=DNA-directed RNA polymerase subunit L
gi|18891954|gb|AAL80174.1| DNA-directed RNA polymerase subunit l [Pyrococcus furiosus DSM
3638]
gi|393189825|gb|AFN04523.1| DNA-directed RNA polymerase subunit L [Pyrococcus furiosus COM1]
Length = 95
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDA--RVNIRVQTTGD-PAREVLKDS 70
F L EDHT AN + TL ++P V F Y+I HP + RV T G+ E L+++
Sbjct: 15 FYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGEITPEEALEEA 74
Query: 71 CQELMLMCRHVRSTFAKAV 89
+++ + V + KAV
Sbjct: 75 AKKIFERAKEVLEAWEKAV 93
>gi|159116857|ref|XP_001708649.1| RNA polymerase II subunit Rpb11 [Giardia lamblia ATCC 50803]
gi|21842229|gb|AAM77741.1|AF510649_1 RNA polymerase II subunit Rpb11 [Giardia intestinalis]
gi|157436762|gb|EDO80975.1| RNA polymerase II subunit Rpb11 [Giardia lamblia ATCC 50803]
Length = 131
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
+E G + F + +D+T+ + +R L P+VTF G PHP ++++ IR+QT
Sbjct: 21 LEVYKVGTANALEFQIPYQDYTIGHILRKELLSMPQVTFAGMKTPHPLESKIVIRLQT-- 78
Query: 61 DPAREVLKDSCQELMLMCRH------------VRSTFAKAVDDF 92
+P+ L D+ Q C ++ TF AVDD+
Sbjct: 79 NPSG-FLSDTIQATPENCFQSALTKITESMELIKKTFMAAVDDY 121
>gi|409076370|gb|EKM76742.1| hypothetical protein AGABI1DRAFT_131035 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 103
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA 63
GA D S ATF + +E HT+ NA+R+ L ++ +PHPS+ +N+R+Q + +
Sbjct: 14 GASADLSAATFQIHDESHTMGNALRWMLMKN---------VPHPSENVINVRIQMYDNIS 64
Query: 64 R-EVLKDSCQELMLMCRHVRSTFAKAV 89
+ L + L +C + + +++
Sbjct: 65 SFDALISALDNLDHLCESIEDAYLESL 91
>gi|332158208|ref|YP_004423487.1| DNA-directed RNA polymerase subunit L [Pyrococcus sp. NA2]
gi|331033671|gb|AEC51483.1| DNA-directed RNA polymerase subunit L [Pyrococcus sp. NA2]
Length = 95
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDA--RVNIRVQTTGDPARE 65
+Q F L EDHT AN + TL ++P V F Y+I HP + RV T G E
Sbjct: 9 EQDLLEFYLEGEDHTFANLLTETLRENPHVKFAAYTIEHPITMARKPRFRVVTDGKITPE 68
Query: 66 -VLKDSCQELMLMCRHVRSTFAKAV 89
L+D+ +++ + V + KA+
Sbjct: 69 KALEDAARKIFERAKEVLDAWEKAI 93
>gi|300175723|emb|CBK21266.2| unnamed protein product [Blastocystis hominis]
Length = 99
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRV 56
+ + EDHTL N +R + +DP V F GY +PHP + +RV
Sbjct: 33 YIIEVEDHTLGNIMRMDMIEDPNVKFVGYRVPHPLSTCIEMRV 75
>gi|221487866|gb|EEE26098.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative
[Toxoplasma gondii GT1]
Length = 178
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
TF ED+T+ +R L DPRV F G PHP + ++ +R+QT ++ +S
Sbjct: 38 GTFVFHLEDYTIGYIIRNDLLNDPRVKFVGLRQPHPLEPKIELRIQTVSSSPFTLVLESL 97
Query: 72 QELMLMCRHVRSTFAKAV 89
++ +++ F AV
Sbjct: 98 RKRKAGLSLLKARFKAAV 115
>gi|237830945|ref|XP_002364770.1| RNA polymerase II subunit RPB11, putative [Toxoplasma gondii ME49]
gi|211962434|gb|EEA97629.1| RNA polymerase II subunit RPB11, putative [Toxoplasma gondii ME49]
gi|221507649|gb|EEE33253.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 178
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
TF ED+T+ +R L DPRV F G PHP + ++ +R+QT ++ +S
Sbjct: 38 GTFVFHLEDYTIGYIIRNDLLNDPRVKFVGLRQPHPLEPKIELRIQTVSSNPFTLVLESL 97
Query: 72 QELMLMCRHVRSTFAKAV 89
++ +++ F AV
Sbjct: 98 RKRKAGLSLLKARFKAAV 115
>gi|70606015|ref|YP_254885.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
DSM 639]
gi|449066211|ref|YP_007433293.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
N8]
gi|449068487|ref|YP_007435568.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
Ron12/I]
gi|1173166|sp|P46217.1|RPOL_SULAC RecName: Full=DNA-directed RNA polymerase subunit L
gi|912481|emb|CAA50072.1| RNA polymerase subunit L [Sulfolobus acidocaldarius]
gi|68566663|gb|AAY79592.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
DSM 639]
gi|449034719|gb|AGE70145.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
N8]
gi|449036995|gb|AGE72420.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
Ron12/I]
Length = 90
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
+Q+ + E+HT+ N ++ L + P V F YS+PHP + I++ T G ARE
Sbjct: 9 EQNYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREA 68
Query: 67 LKDSCQ 72
L + +
Sbjct: 69 LIKAIE 74
>gi|396082418|gb|AFN84027.1| DNA-directed RNA polymerase I and III subunit AC19
[Encephalitozoon romaleae SJ-2008]
Length = 100
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQD---PRVTFCGYSIPHPSDARVNIRVQTTGDPAR 64
++ T + +EDHT+ N +R+ ++++ +V GY+IPHPSD NI +Q + + ++
Sbjct: 11 NDQTIQVNKEDHTIMNPLRWCISKNFVGEKVELVGYTIPHPSDDVSNITIQFSSESSQ 68
>gi|253744474|gb|EET00682.1| RNA polymerase II subunit Rpb11 [Giardia intestinalis ATCC 50581]
Length = 131
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
+E G + F + +D+T+ + +R L P+VTF G PHP ++++ IR+QT
Sbjct: 21 LEVYKIGAANALEFQIPYQDYTIGHILRKELLAMPQVTFAGMKTPHPLESKIVIRLQTN- 79
Query: 61 DPAREVLKDSCQELMLMCRH------------VRSTFAKAVDDF 92
A L D+ Q C ++ TF AVD++
Sbjct: 80 --ASAFLSDTIQATPENCFQSALTKVTESMELLKKTFTAAVDNY 121
>gi|395842980|ref|XP_003794284.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a
[Otolemur garnettii]
gi|402863133|ref|XP_003895886.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Papio
anubis]
Length = 87
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLM 77
E L + L +DP+V F GY +PHP + ++ IRVQTT D +E ++ +L+
Sbjct: 8 ESFLLFEGEKKQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISE 67
Query: 78 CRHVRSTFAKAVDD 91
+ F A+ D
Sbjct: 68 LSLLEERFRVAIKD 81
>gi|396457950|ref|XP_003833588.1| hypothetical protein LEMA_P063490.1 [Leptosphaeria maculans JN3]
gi|312210136|emb|CBX90223.1| hypothetical protein LEMA_P063490.1 [Leptosphaeria maculans JN3]
Length = 163
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLKD 69
A F+ +EDHTL N + L + +V F Y +PHP A +RVQT G P V++
Sbjct: 64 AIFTFNKEDHTLGNLLSQRLLKYDQVMFAAYKVPHPLFAMFELRVQTDGSITPKDAVVR- 122
Query: 70 SCQELMLMCRHVRSTFAKAVDDFR 93
C CR V K D F+
Sbjct: 123 -C------CRDVVQDLQKLNDSFQ 139
>gi|57641102|ref|YP_183580.1| DNA-directed RNA polymerase subunit L [Thermococcus kodakarensis
KOD1]
gi|73917889|sp|Q5JE88.1|RPOL_PYRKO RecName: Full=DNA-directed RNA polymerase subunit L
gi|57159426|dbj|BAD85356.1| DNA-directed RNA polymerase, subunit L [Thermococcus kodakarensis
KOD1]
Length = 94
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDA--RVNIRVQTTGDPARE-VLKDS 70
F L EDHT AN + TL+++ VTF GY+I HP + +V T G E L+++
Sbjct: 15 FYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKALEEA 74
Query: 71 CQELMLMCRHVRSTFAKAVD 90
Q++ R V + A++
Sbjct: 75 AQKIFDRAREVLEAWKAAIE 94
>gi|409048476|gb|EKM57954.1| hypothetical protein PHACADRAFT_116447 [Phanerochaete carnosa
HHB-10118-sp]
Length = 102
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 49/87 (56%), Gaps = 10/87 (11%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-P 62
GA D S AT+ + +E HT+ N++R+ L ++ +PHPS+ +++R+Q +
Sbjct: 13 GAEPDLSAATYQIHDESHTIGNSLRWMLMKN---------VPHPSENHIHLRIQMYDNLS 63
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV 89
+ E L ++ + L +C V + + +++
Sbjct: 64 SLEALLEALENLGNLCDTVENAYKQSL 90
>gi|393213875|gb|EJC99370.1| RBP11-like subunits of RNA polymerase [Fomitiporia mediterranea
MF3/22]
Length = 171
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
AT + ++DHTL N +R L + V F GY +PHP +++QT G
Sbjct: 31 ATIKIRKQDHTLGNMLRHQLLANQSVLFAGYRVPHPLQPYFLLKIQTDG 79
>gi|440494570|gb|ELQ76940.1| RNA polymerase, subunit L [Trachipleistophora hominis]
Length = 103
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLM 77
E HTL N + + DPR TF Y + HP D V+++V D P ++KD+ + L
Sbjct: 28 ESHTLGNLIAEKILSDPRCTFSAYKVNHPLDEEVDLKVSAQKDTPVLTLIKDNLKSLE-- 85
Query: 78 CRHVRSTFAKAVDDFRT 94
+ S A+A ++ +T
Sbjct: 86 -DDIESLIAQAKEERKT 101
>gi|67470818|ref|XP_651372.1| RNA polymerases II subunit [Entamoeba histolytica HM-1:IMSS]
gi|56468094|gb|EAL45982.1| RNA polymerases II subunit, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407042561|gb|EKE41399.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Entamoeba nuttalli P19]
gi|449707159|gb|EMD46864.1| RNA polymerases II subunit, putative [Entamoeba histolytica KU27]
Length = 112
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT 58
F+L +EDHT N +R L ++P V F GY PHP + + + ++T
Sbjct: 30 FTLVKEDHTAGNILRVMLLRNPHVLFAGYRQPHPLNYVIEMTIRT 74
>gi|260808385|ref|XP_002598988.1| hypothetical protein BRAFLDRAFT_280794 [Branchiostoma floridae]
gi|229284263|gb|EEN55000.1| hypothetical protein BRAFLDRAFT_280794 [Branchiostoma floridae]
Length = 117
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 23 LANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
+A ++R L +DP+V F GY +PHP + + +R+QTT D
Sbjct: 43 IAKSIRQQLLKDPQVIFAGYKVPHPLEHKFVLRLQTTPD 81
>gi|167377825|ref|XP_001734557.1| DNA-directed RNA polymerase II subunit RPB11 [Entamoeba dispar
SAW760]
gi|167384275|ref|XP_001736882.1| DNA-directed RNA polymerase II subunit RPB11 [Entamoeba dispar
SAW760]
gi|165900590|gb|EDR26886.1| DNA-directed RNA polymerase II subunit RPB11, putative [Entamoeba
dispar SAW760]
gi|165903881|gb|EDR29278.1| DNA-directed RNA polymerase II subunit RPB11, putative [Entamoeba
dispar SAW760]
Length = 112
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSD--ARVNIRVQTTGDPAR---EVLK 68
F+ +EDHT N +R L ++P V F GY PHP + + IR TT P + + +
Sbjct: 30 FTFVKEDHTAGNILRVMLLRNPHVLFAGYRQPHPLNYIIEMTIRTDTTITPKQALEQAMD 89
Query: 69 DSCQELMLM 77
D E+ +M
Sbjct: 90 DVIHEIEIM 98
>gi|387593600|gb|EIJ88624.1| hypothetical protein NEQG_01314 [Nematocida parisii ERTm3]
gi|387597255|gb|EIJ94875.1| hypothetical protein NEPG_00400 [Nematocida parisii ERTm1]
Length = 97
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTGDPAREVLKDSC 71
S+ +EDHT+ NA+ L ++ V+F Y IPHP + +V + V+ + D E +K S
Sbjct: 22 ISIRDEDHTIGNALASELQKEKDVSFSAYKIPHPLQNILKVKVVVEKSEDRPIEFVKASL 81
Query: 72 QELMLMCRHVRSTFAK 87
L+ C + S K
Sbjct: 82 DHLISDCDSMLSQIYK 97
>gi|119570638|gb|EAW50253.1| hCG1818005, isoform CRA_c [Homo sapiens]
Length = 69
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 31 LNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQELMLMCRHVRSTFAKAV 89
L +DP+V F GY +PHP + ++ IRVQTT D + +E ++ +L+ + F A+
Sbjct: 2 LLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 61
Query: 90 DD 91
D
Sbjct: 62 KD 63
>gi|401412023|ref|XP_003885459.1| putative RNA polymerase II subunit RPB11 [Neospora caninum
Liverpool]
gi|325119878|emb|CBZ55431.1| putative RNA polymerase II subunit RPB11 [Neospora caninum
Liverpool]
Length = 208
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSC 71
TF ED+T+ +R L D RV F G PHP + ++ +R+QT + ++ +S
Sbjct: 38 GTFVFHLEDYTIGYVLRNDLLNDARVKFVGLRQPHPLEPKIELRIQTVSNSPFTLVLESL 97
Query: 72 QELMLMCRHVRSTFAKAV 89
++ +R+ F AV
Sbjct: 98 RKRKAALSLLRARFKAAV 115
>gi|390960482|ref|YP_006424316.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. CL1]
gi|390518790|gb|AFL94522.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. CL1]
Length = 95
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTGDPARE-VLKDS 70
F L EDHT AN + L+++ VTF GY+I HP + RV T G E L+++
Sbjct: 15 FYLEGEDHTFANLLNEVLHENEHVTFAGYTIEHPILMARKPRFRVVTDGKVTPEKALEEA 74
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
Q++ R V + AV +
Sbjct: 75 AQKIFDRARAVLDAWKNAVGE 95
>gi|299741997|ref|XP_001832180.2| hypothetical protein CC1G_02442 [Coprinopsis cinerea
okayama7#130]
gi|298404981|gb|EAU89553.2| hypothetical protein CC1G_02442 [Coprinopsis cinerea
okayama7#130]
Length = 102
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDP 62
GA D S AT+ L +E HT+ N++R+ L ++ PHPS+ +N+R+Q G
Sbjct: 13 GAAPDLSAATYQLHDESHTIGNSLRWMLMKNN---------PHPSENVINVRIQMYDGLS 63
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAV 89
+ + L + +L +C V + +++
Sbjct: 64 SLDALLKALSDLDNLCEAVEDAYLESL 90
>gi|401828018|ref|XP_003888301.1| RNA polymerase subunit AC19 [Encephalitozoon hellem ATCC 50504]
gi|392999573|gb|AFM99320.1| RNA polymerase subunit AC19 [Encephalitozoon hellem ATCC 50504]
Length = 104
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQD---PRVTFCGYSIPHPSDARVNIRVQTTGDPAR 64
++ T + EEDHT+ N +R+ ++++ V GY+IPHPSD N+ +Q + + ++
Sbjct: 11 NDQTIQVKEEDHTIMNPLRWCISKNFTGESVELVGYTIPHPSDDVSNLTIQFSSESSQ 68
>gi|212223525|ref|YP_002306761.1| DNA-directed RNA polymerase subunit L [Thermococcus onnurineus
NA1]
gi|229564250|sp|B6YTH7.1|RPOL_THEON RecName: Full=DNA-directed RNA polymerase subunit L
gi|212008482|gb|ACJ15864.1| DNA-directed RNA polymerase, subunit L [Thermococcus onnurineus
NA1]
Length = 95
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPS--DARVNIRVQTTGDPARE-VLKDS 70
F L EDHT AN + L+++ VTF GY+I HP + RV T G E VL+++
Sbjct: 15 FYLEGEDHTFANLLNEVLHENEHVTFAGYTIEHPVLMARKPKFRVVTDGKITPEQVLEEA 74
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
Q++ R V + + + +
Sbjct: 75 AQKIFDRARAVLEAWKEVLGE 95
>gi|449480053|ref|XP_002193087.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Taeniopygia guttata]
Length = 94
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 31 LNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAV 89
L +DP+V F GY +PHP + ++ IRVQTT D +E ++ +L+ + F A+
Sbjct: 27 LLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 86
Query: 90 DD 91
D
Sbjct: 87 KD 88
>gi|435852344|ref|YP_007313930.1| DNA-directed RNA polymerase, subunit L [Methanomethylovorans
hollandica DSM 15978]
gi|433662974|gb|AGB50400.1| DNA-directed RNA polymerase, subunit L [Methanomethylovorans
hollandica DSM 15978]
Length = 92
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELMLMC 78
E HTL N ++ L +D R+ Y + H S + + ++T G V+K++ + L+ C
Sbjct: 20 ETHTLLNMLKSVLLEDIRIHTASYDMKHVSISEPILYIKTDGTDPIIVIKEAAETLVAQC 79
Query: 79 RHVRSTFAKAVD 90
S F KAVD
Sbjct: 80 EEFISVFGKAVD 91
>gi|429963322|gb|ELA42866.1| hypothetical protein VICG_00181 [Vittaforma corneae ATCC 50505]
Length = 103
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDP---RVTFCGYSIPHPSDARVNIRVQ 57
+ + +EDHT+ N +R+ ++ + V FCGY+IPHPS+ ++ VQ
Sbjct: 15 SIQIYDEDHTMLNPLRWVISNNWVGDAVEFCGYTIPHPSERISHLNVQ 62
>gi|341581752|ref|YP_004762244.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. 4557]
gi|340809410|gb|AEK72567.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. 4557]
Length = 95
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPS--DARVNIRVQTTGDPARE-VLKDS 70
F L EDHT AN + L+++ VTF GY+I HP + RV T G E L+++
Sbjct: 15 FYLEGEDHTFANLLNEVLHENKHVTFAGYTIEHPVLMARKPKFRVVTDGKVTPEKALEEA 74
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
Q++ R V + A+ +
Sbjct: 75 AQKVFDRARSVLDAWKAAIGE 95
>gi|14520268|ref|NP_125743.1| DNA-directed RNA polymerase subunit L [Pyrococcus abyssi GE5]
gi|11387115|sp|Q9V2M4.1|RPOL_PYRAB RecName: Full=DNA-directed RNA polymerase subunit L
gi|5457483|emb|CAB48974.1| rpoL DNA-directed RNA polymerase, subunit L [Pyrococcus abyssi
GE5]
gi|380740789|tpe|CCE69423.1| TPA: DNA-directed RNA polymerase subunit L [Pyrococcus abyssi
GE5]
Length = 95
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTGDPARE 65
+Q F L EDHT AN + TL ++P V F Y+I HP + RV T G E
Sbjct: 9 EQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITPE 68
Query: 66 -VLKDSCQELMLMCRHVRSTFAKAV 89
L+++ +++ + V + KA+
Sbjct: 69 KALEEAAKKIFDRAKEVLDAWEKAI 93
>gi|307110082|gb|EFN58319.1| hypothetical protein CHLNCDRAFT_142343 [Chlorella variabilis]
Length = 139
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLK 68
S+ +L +E HTL NA+R + P V Y+ HPS + +R QT+G A + +
Sbjct: 19 SSIVLALGDETHTLGNALRDVMWAHPHVQLASYTQEHPSLNEIVVRCQTSGAVTAEQAVA 78
Query: 69 DSCQELMLMCRHVRSTFAKAVDDFR 93
++ + H+ T AV +++
Sbjct: 79 EALHMTQDILHHMADTMDAAVANWQ 103
>gi|395536502|ref|XP_003770254.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Sarcophilus harrisii]
Length = 122
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 31 LNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAV 89
L +DP+V F GY +PHP + ++ IRVQTT D +E ++ +L+ + F A+
Sbjct: 55 LLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 114
Query: 90 DD 91
D
Sbjct: 115 KD 116
>gi|19074859|ref|NP_586365.1| DNA-DIRECTED RNA POLYMERASE I AND III SUBUNIT 14K (14 kDa
polypeptide) [Encephalitozoon cuniculi GB-M1]
gi|19069584|emb|CAD25969.1| DNA-DIRECTED RNA POLYMERASE I AND III SUBUNIT 14K (14 kDa
polypeptide) [Encephalitozoon cuniculi GB-M1]
gi|449328733|gb|AGE95010.1| DNA-directed RNA polymerase I and III subunit 14k
[Encephalitozoon cuniculi]
Length = 104
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 13 TFSLTEEDHTLANAVRFTLNQD---PRVTFCGYSIPHPSDARVNIRVQ 57
T + +EDHT+ N +R+ + ++ +V GY+IPHPSD NI +Q
Sbjct: 14 TVQVRKEDHTIMNPLRWCIGKNFTGEKVELVGYTIPHPSDDISNITIQ 61
>gi|440302854|gb|ELP95160.1| DNA-directed RNA polymerase II subunit RPB11, putative [Entamoeba
invadens IP1]
Length = 110
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREV-LKDSCQ 72
F+ +EDHT N +R L D V F GY PHP + + ++T G +V L+++
Sbjct: 30 FTFVKEDHTAGNMIRVELLNDKHVIFAGYRQPHPLKYVIEMTIRTDGVITPKVALENALD 89
Query: 73 ELMLMCRHVRSTFAKAVDDF 92
++ + + F +A ++
Sbjct: 90 RIIRKVKLAKEDFDQATENL 109
>gi|330834285|ref|YP_004409013.1| DNA-directed RNA polymerase, subunit L [Metallosphaera cuprina
Ar-4]
gi|329566424|gb|AEB94529.1| DNA-directed RNA polymerase, subunit L [Metallosphaera cuprina
Ar-4]
Length = 90
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
D + F + EDHTL N V T+ + P V Y +PHP + I+V+T G
Sbjct: 9 DDNYVEFRIQGEDHTLGNLVAATMRRVPGVILSTYYLPHPLKDELIIKVKTDG 61
>gi|375082272|ref|ZP_09729338.1| DNA-directed RNA polymerase subunit L [Thermococcus litoralis DSM
5473]
gi|374743029|gb|EHR79401.1| DNA-directed RNA polymerase subunit L [Thermococcus litoralis DSM
5473]
Length = 95
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTGDPARE-VLKDS 70
F L EDHT AN + L+++ VTF Y+I HP + +V T G E L+++
Sbjct: 15 FYLVGEDHTFANLLNEVLHENKHVTFAAYTIEHPVLMARKPRFKVATDGKITPEKALEEA 74
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
Q++ + V + KA+ +
Sbjct: 75 AQKIFDRAKEVLEAWEKAIKE 95
>gi|119570637|gb|EAW50252.1| hCG1818005, isoform CRA_b [Homo sapiens]
Length = 79
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 31 LNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-----VLKDSCQELMLMCRHVR 82
L +DP+V F GY +PHP + ++ IRVQTT D + + + D EL L+ R
Sbjct: 2 LLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 58
>gi|154321049|ref|XP_001559840.1| hypothetical protein BC1G_01399 [Botryotinia fuckeliana B05.10]
Length = 80
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 27 VRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELM 75
+R L +DP V F GY IPHP ++ +R+QT G+ +E L C+ L+
Sbjct: 2 LRAHLLKDPHVIFSGYKIPHPLFSKFELRIQTDGEITPKEALVACCRNLV 51
>gi|170100248|ref|XP_001881342.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644021|gb|EDR08272.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 182
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFC 40
GA D S AT+ + +E HT+ NA+R+ L ++P+V FC
Sbjct: 13 GAAADLSAATYQIHDESHTVGNALRWMLMKNPKVEFC 49
>gi|73669147|ref|YP_305162.1| DNA-directed RNA polymerase subunit L [Methanosarcina barkeri
str. Fusaro]
gi|93140683|sp|Q46C10.1|RPOL_METBF RecName: Full=DNA-directed RNA polymerase subunit L
gi|72396309|gb|AAZ70582.1| DNA-directed RNA polymerase, subunit L [Methanosarcina barkeri
str. Fusaro]
Length = 92
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 16 LTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELM 75
L E HTL N ++ L +D RV Y + + S + + ++T G EVLKD+ +++
Sbjct: 17 LKGETHTLLNILKDLLIKDQRVEIAFYDMKYVSISDPILYIKTDGTNPIEVLKDAASQII 76
Query: 76 LMCRHVRSTFAKAVD 90
C F+KAV+
Sbjct: 77 SQCDEFTDVFSKAVN 91
>gi|254570701|ref|XP_002492460.1| RNA polymerase II subunit B12.5 [Komagataella pastoris GS115]
gi|238032258|emb|CAY70274.1| RNA polymerase II subunit B12.5 [Komagataella pastoris GS115]
gi|328353526|emb|CCA39924.1| DNA-directed RNA polymerase II subunit J [Komagataella pastoris
CBS 7435]
Length = 118
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDSCQELM 75
EDHTLAN +R L P VTF Y + HP A +R+QT G ++ L+ +C ++
Sbjct: 38 EDHTLANLLREELALYPDVTFVAYKVEHPLFANFVMRLQTEEGTRPKQALERACASII 95
>gi|303391349|ref|XP_003073904.1| DNA-directed RNA polymerase I and III subunit AC19
[Encephalitozoon intestinalis ATCC 50506]
gi|303303053|gb|ADM12544.1| DNA-directed RNA polymerase I and III subunit AC19
[Encephalitozoon intestinalis ATCC 50506]
Length = 104
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 13 TFSLTEEDHTLANAVRFTLNQD---PRVTFCGYSIPHPSDARVNIRVQTTGDPAR 64
T + +EDHT+ N +R+ ++++ V GY+IPHPSD N+ +Q + + ++
Sbjct: 14 TIQVEKEDHTIMNPLRWCISKNFYGENVELVGYTIPHPSDDASNLTIQFSNESSQ 68
>gi|223478516|ref|YP_002583385.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. AM4]
gi|214033742|gb|EEB74568.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. AM4]
Length = 98
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTG-DPAREVLKDS 70
F L EDHT AN + TL++D V F YSI HP + ++ T G + E L+ +
Sbjct: 15 FYLEGEDHTFANLLVETLHEDEHVKFAAYSIDHPILMARKPRFKIVTDGKESPEEALEKA 74
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
Q + R V + A+ +
Sbjct: 75 AQRIFDRARAVLEAWKSAIGE 95
>gi|67624701|ref|XP_668633.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659865|gb|EAL38427.1| hypothetical protein Chro.40364 [Cryptosporidium hominis]
Length = 98
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 33/89 (37%)
Query: 34 DPRVTFCGYSIPHPSDARVNIRVQTTGD-------------------------------- 61
+P TF GY+IPHPS + +N+R++T +
Sbjct: 3 NPNTTFAGYAIPHPSISTMNLRIETISNVEVDDKNYNLDLKAALSPSLDKKSSSKKQSSK 62
Query: 62 -PAREVLKDSCQELMLMCRHVRSTFAKAV 89
A ++L +C +L L+C + F KAV
Sbjct: 63 VGATQILLKACDDLNLICNKIEDKFDKAV 91
>gi|237823487|pdb|2WAQ|L Chain L, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823501|pdb|2WB1|L Chain L, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823502|pdb|2WB1|M Chain M, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462799|pdb|2Y0S|L Chain L, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
gi|323462800|pdb|2Y0S|M Chain M, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
gi|400260751|pdb|4AYB|L Chain L, Rnap At 3.2ang
gi|400260768|pdb|4B1O|L Chain L, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260778|pdb|4B1P|M Chain M, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814447|gb|ACL36497.1| RNA polymerase subunit 11 [Sulfolobus shibatae B12]
Length = 92
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1 MEHGAFGDQSNAT-FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT 59
ME +SN + EDHTL N + TL + V+F Y PHP ++ +++ T
Sbjct: 1 MEIKILKSESNYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTD 60
Query: 60 GDPA-REVLKDSCQELMLMCRH 80
G A ++ L + + + +M H
Sbjct: 61 GSIAPKDALLKAIETVRVMASH 82
>gi|14591738|ref|NP_142060.1| DNA-directed RNA polymerase subunit L [Pyrococcus horikoshii OT3]
gi|11387091|sp|P57671.1|RPOL_PYRHO RecName: Full=DNA-directed RNA polymerase subunit L
Length = 95
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDA--RVNIRVQTTGDPARE-VLKDS 70
F L EDHT AN + L +DP V F Y+I HP + RV T G E L+++
Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPITMARKPRFRVVTDGKVTPEKALEEA 74
Query: 71 CQELMLMCRHVRSTFAKAV 89
+++ + V + K V
Sbjct: 75 ARKIFNRAKEVLDAWEKVV 93
>gi|126649022|ref|XP_001388073.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117161|gb|EAZ51261.1| hypothetical protein cgd4_3200 [Cryptosporidium parvum Iowa II]
Length = 98
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 33/89 (37%)
Query: 34 DPRVTFCGYSIPHPSDARVNIRVQTTGD-------------------------------- 61
+P TF GY+IPHPS + +N+R++T +
Sbjct: 3 NPNTTFAGYAIPHPSISTMNLRIETISNVEVDNKNYNLDLKAAPSPSLDKKSSSKKQSSK 62
Query: 62 -PAREVLKDSCQELMLMCRHVRSTFAKAV 89
A ++L +C +L L+C + F KAV
Sbjct: 63 VGATQILLKACDDLNLICNKIEDKFDKAV 91
>gi|240103060|ref|YP_002959369.1| DNA-directed RNA polymerase subunit L [Thermococcus gammatolerans
EJ3]
gi|259494368|sp|C5A5J3.1|RPOL_THEGJ RecName: Full=DNA-directed RNA polymerase subunit L
gi|239910614|gb|ACS33505.1| DNA-directed RNA polymerase subunit L (rpoL) [Thermococcus
gammatolerans EJ3]
Length = 95
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTG-DPAREVLKDS 70
F L EDHT AN + TL++D V F YSI HP + ++ T G + E L+ +
Sbjct: 15 FYLEGEDHTFANLLVETLHEDKHVKFAAYSIDHPILMARKPRFKIVTDGKESPEEALEKA 74
Query: 71 CQELMLMCRHVRSTFAKAVD 90
Q + R V + A++
Sbjct: 75 AQRVFDRARAVLEAWKSAIE 94
>gi|410671314|ref|YP_006923685.1| RNA polymerase dimerization [Methanolobus psychrophilus R15]
gi|409170442|gb|AFV24317.1| RNA polymerase dimerization [Methanolobus psychrophilus R15]
Length = 92
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELMLMC 78
E HTL N ++ L D RV Y + H S + + V+T G +V+KD+ + L+ C
Sbjct: 20 ETHTLLNMLKSVLLDDSRVQIATYDMKHVSISDPILFVKTDGTDPIDVIKDALRVLISQC 79
Query: 79 RHVRSTFAKAVD 90
F+KAV+
Sbjct: 80 DEFIGVFSKAVE 91
>gi|242211754|ref|XP_002471714.1| predicted protein [Postia placenta Mad-698-R]
gi|220729270|gb|EED83148.1| predicted protein [Postia placenta Mad-698-R]
Length = 89
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 12 ATFSLTEEDHTLANAVR-FTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKD 69
AT + ++DHTL N +R +T D C Y +PHP I++QT G VL+
Sbjct: 11 ATIKVLKQDHTLGNLIRAYTTVVDAANFVCRYKVPHPLQPHFLIKIQTDGTITPTAVLEQ 70
Query: 70 SCQELM 75
+C +L+
Sbjct: 71 ACTKLI 76
>gi|378755189|gb|EHY65216.1| hypothetical protein NERG_01662 [Nematocida sp. 1 ERTm2]
Length = 108
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTGDPAREVLKDSC 71
S+ +EDHT+ NA+ L ++ V F Y IPHP + +V + V + D + +K S
Sbjct: 33 LSIRDEDHTIGNALASELQKNEDVAFAAYKIPHPLQNILKVKVVVDKSEDRPIDFVKASL 92
Query: 72 QELMLMCRHVRSTFAK 87
L+ C + S K
Sbjct: 93 DSLINDCESMLSQIYK 108
>gi|389851562|ref|YP_006353796.1| DNA-directed RNA polymerase subunit L [Pyrococcus sp. ST04]
gi|388248868|gb|AFK21721.1| DNA-directed RNA polymerase subunit L [Pyrococcus sp. ST04]
Length = 97
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDA--RVNIRVQTTGDPARE-VLKDS 70
F L EDHT AN + TL ++P V F Y+I HP + RV T G E L+++
Sbjct: 15 FYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGKVTPEQALEEA 74
Query: 71 CQELMLMCRHVRSTFAKAV 89
+++ + + KA+
Sbjct: 75 AKKIFERAKETLEVWEKAI 93
>gi|119570636|gb|EAW50251.1| hCG1818005, isoform CRA_a [Homo sapiens]
Length = 111
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 31 LNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
L +DP+V F GY +PHP + ++ IRVQTT D
Sbjct: 2 LLKDPQVLFAGYKVPHPLEHKIIIRVQTTPD 32
>gi|242398485|ref|YP_002993909.1| DNA-directed RNA polymerase subunit L [Thermococcus sibiricus MM
739]
gi|259494369|sp|C6A1R5.1|RPOL_THESM RecName: Full=DNA-directed RNA polymerase subunit L
gi|242264878|gb|ACS89560.1| DNA-directed RNA polymerase subunit L [Thermococcus sibiricus MM
739]
Length = 95
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPS--DARVNIRVQTTGDPARE 65
D++ F L EDHT AN + TL+++ VTF Y+I HP + R+ T G E
Sbjct: 9 DKNLLEFYLVGEDHTFANLLSETLHENKHVTFAAYTIEHPVLMARKPRFRISTDGKITPE 68
Query: 66 -VLKDSCQELM 75
L+++ Q++
Sbjct: 69 KALEEAAQKIF 79
>gi|426357388|ref|XP_004046024.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Gorilla gorilla gorilla]
Length = 113
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 31 LNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPARE-----VLKDSCQELMLM--CRHVRS 83
L +DP+V F GY +PHP + ++ IRVQTT D + + + + EL L+ C VR+
Sbjct: 4 LLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITNLISELSLLEECFQVRA 63
Query: 84 TFAKA 88
A
Sbjct: 64 GPGGA 68
>gi|160331498|ref|XP_001712456.1| rpb11 [Hemiselmis andersenii]
gi|159765904|gb|ABW98131.1| rpb11 [Hemiselmis andersenii]
Length = 106
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 6 FGDQSN---ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG-- 60
+ D+ N F + +EDHTL + + L ++ V F GY PHP + + +++ T G
Sbjct: 23 YKDEKNKNCGYFKIEKEDHTLGHLIHSKLLKEKSVIFSGYKRPHPLEHFIYLKIITDGVF 82
Query: 61 ---DPAREVLKDSCQEL 74
D VLKD E
Sbjct: 83 SPKDAFDSVLKDLYIEF 99
>gi|227828072|ref|YP_002829852.1| RNA polymerase dimerisation [Sulfolobus islandicus M.14.25]
gi|227830809|ref|YP_002832589.1| RNA polymerase dimerisation [Sulfolobus islandicus L.S.2.15]
gi|229579705|ref|YP_002838104.1| RNA polymerase dimerisation [Sulfolobus islandicus Y.G.57.14]
gi|229581629|ref|YP_002840028.1| RNA polymerase dimerisation [Sulfolobus islandicus Y.N.15.51]
gi|229585341|ref|YP_002843843.1| RNA polymerase dimerisation [Sulfolobus islandicus M.16.27]
gi|238620302|ref|YP_002915128.1| RNA polymerase dimerisation [Sulfolobus islandicus M.16.4]
gi|284998323|ref|YP_003420091.1| RNA polymerase, dimerization [Sulfolobus islandicus L.D.8.5]
gi|385773780|ref|YP_005646347.1| RNA polymerase dimerization [Sulfolobus islandicus HVE10/4]
gi|385776415|ref|YP_005648983.1| RNA polymerase dimerization [Sulfolobus islandicus REY15A]
gi|259494225|sp|C3MZG6.1|RPOL_SULIA RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494226|sp|C4KIP6.1|RPOL_SULIK RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494227|sp|C3MRD1.1|RPOL_SULIL RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494228|sp|C3MXM0.1|RPOL_SULIM RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494229|sp|C3NFY8.1|RPOL_SULIN RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494367|sp|C3N7I8.1|RPOL_SULIY RecName: Full=DNA-directed RNA polymerase subunit L
gi|227457257|gb|ACP35944.1| RNA polymerase dimerisation [Sulfolobus islandicus L.S.2.15]
gi|227459868|gb|ACP38554.1| RNA polymerase dimerisation [Sulfolobus islandicus M.14.25]
gi|228010420|gb|ACP46182.1| RNA polymerase dimerisation [Sulfolobus islandicus Y.G.57.14]
gi|228012345|gb|ACP48106.1| RNA polymerase dimerisation [Sulfolobus islandicus Y.N.15.51]
gi|228020391|gb|ACP55798.1| RNA polymerase dimerisation [Sulfolobus islandicus M.16.27]
gi|238381372|gb|ACR42460.1| RNA polymerase dimerisation [Sulfolobus islandicus M.16.4]
gi|284446219|gb|ADB87721.1| RNA polymerase, dimerization [Sulfolobus islandicus L.D.8.5]
gi|323475163|gb|ADX85769.1| RNA polymerase dimerization [Sulfolobus islandicus REY15A]
gi|323477895|gb|ADX83133.1| RNA polymerase dimerization [Sulfolobus islandicus HVE10/4]
Length = 92
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQELMLM 77
EDHTL N + TL + V+F Y PHP ++ +++ T G A ++ L + + + +M
Sbjct: 20 EDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIETVRVM 79
Query: 78 CRH 80
H
Sbjct: 80 ASH 82
>gi|429964494|gb|ELA46492.1| hypothetical protein VCUG_02036 [Vavraia culicis 'floridensis']
Length = 103
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQEL 74
E HTL N + + DPR TF Y + HP + V+++V D P ++K++ + L
Sbjct: 28 ESHTLGNMIAEKILSDPRCTFSAYKVSHPLNEEVDLKVSAEKDTPVLTLIKENLKGL 84
>gi|170289751|ref|YP_001736567.1| DNA-directed RNA polymerase subunit L [Candidatus Korarchaeum
cryptofilum OPF8]
gi|229564219|sp|B1L7Q7.1|RPOL_KORCO RecName: Full=DNA-directed RNA polymerase subunit L
gi|170173831|gb|ACB06884.1| DNA-directed RNA polymerase, subunit L [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 98
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTGDPAREVLKDSCQELML 76
E HTL + + LN V F GY +PHP ++ + +RV+ +P REVLK + + LM
Sbjct: 20 ETHTLLSPLVEELNSLDEVEFAGYDVPHPLKEESVLFLRVKEGMNP-REVLKGAIRRLME 78
Query: 77 MCRHVRSTFAKAVDDFRTS 95
+ ++F + + + +
Sbjct: 79 KYEIIGNSFIEELSSLKVN 97
>gi|429965902|gb|ELA47899.1| hypothetical protein VCUG_00619 [Vavraia culicis 'floridensis']
Length = 115
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKD 69
S T + EDHTL N +++ L Q P V GY IPH S+ V + + D ++ +
Sbjct: 30 SPTTIRIAHEDHTLMNVIQYFLMQHPFVV-AGYVIPHLSEDVVELSIVGKNDMIGDIFEW 88
Query: 70 SCQEL 74
C L
Sbjct: 89 LCTAL 93
>gi|389860778|ref|YP_006363018.1| DNA-directed RNA polymerase subunit L [Thermogladius
cellulolyticus 1633]
gi|388525682|gb|AFK50880.1| DNA-directed RNA polymerase subunit L [Thermogladius
cellulolyticus 1633]
Length = 91
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQELMLM 77
EDHTL N + DPRV + Y IPHP R+ + + T G+ +VL + +L+
Sbjct: 20 EDHTLGNLLAKEALLDPRVEYSAYRIPHPLQERMELTLVTKQGEDPLKVLVEIIDKLVGD 79
Query: 78 CRHVRS 83
R RS
Sbjct: 80 IRAFRS 85
>gi|156088259|ref|XP_001611536.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798790|gb|EDO07968.1| conserved hypothetical protein [Babesia bovis]
Length = 92
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 23 LANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELMLMCRHVR 82
L V+ L++D RV F GY +PHP + ++ IR++ D V+ ++ + L H++
Sbjct: 19 LGQGVKKRLSKDERVAFVGYRMPHPLENKLEIRLRCKVDSPFTVMLNAISSVRLNIGHLK 78
Query: 83 STF 85
+
Sbjct: 79 KVY 81
>gi|440492908|gb|ELQ75439.1| DNA-directed RNA polymerase, subunit L [Trachipleistophora
hominis]
Length = 118
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 10 SNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKD 69
S+ T + EDHTL N V++ L Q P + GY IPH S+ V + + D V
Sbjct: 30 SSTTIRIAHEDHTLMNVVQYFLMQRPFI-IAGYVIPHLSEDVVELSIVGKDDMKGNVFDW 88
Query: 70 SCQEL 74
C L
Sbjct: 89 LCDAL 93
>gi|405967595|gb|EKC32736.1| DNA-directed RNA polymerase II subunit RPB11-a [Crassostrea gigas]
Length = 156
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 39/117 (33%)
Query: 12 ATFSLTEEDHTLANAV------------------------------RFTLNQ-------- 33
A F++ +EDHTL N + RF N+
Sbjct: 31 AIFTVNKEDHTLGNMITARTDTVRTASRANGPRANENQSEQRQGQTRFRANEQPIIQLRK 90
Query: 34 DPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAV 89
DP+V F GY PHP + + +RVQTT D +E + + +L+ + F +AV
Sbjct: 91 DPQVLFAGYKNPHPLEHKFVLRVQTTSDYSPQEAITHAITDLISEFSLLEERFKEAV 147
>gi|159123105|gb|EDP48225.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus fumigatus A1163]
Length = 229
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 35/105 (33%)
Query: 6 FGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYS---------------------- 43
G S++ F+ +EDHTL N +R L Q+ V F GY
Sbjct: 91 LGIPSSSIFTFNKEDHTLGNLLRSRLLQNSHVIFAGYKVCPPMEAVFSSILFEVLGAFLE 150
Query: 44 ------------IPHPSDARVNIRVQTTGD-PAREVLKDSCQELM 75
+PHP + +RVQT G+ ++ L +C +L+
Sbjct: 151 SFGMHGSDELSQVPHPLVPKFELRVQTDGEITPKDALLAACHDLV 195
>gi|387592822|gb|EIJ87846.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
gi|387595443|gb|EIJ93067.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 95
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 13 TFSLTEEDHTLANAVRFTLNQDPRV---TFCGYSIPHPSDARVNIRVQ 57
T L + +HT+ N +R+ +N+ V GY+IPHP + R +++Q
Sbjct: 10 TIELLKTNHTILNVIRWAINEFESVYDVELIGYTIPHPMEERAIMKIQ 57
>gi|402468386|gb|EJW03550.1| hypothetical protein EDEG_02134 [Edhazardia aedis USNM 41457]
Length = 161
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQEL 74
E HTL N + L QD R F Y +PHP + +V +RV + + E++ D+ L
Sbjct: 81 ETHTLGNILADRLLQDTRCVFAAYKVPHPLEEKVMVRVTSAKNCDVMELINDALMSL 137
>gi|353238406|emb|CCA70353.1| hypothetical protein PIIN_04292 [Piriformospora indica DSM 11827]
Length = 97
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 9/54 (16%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQ 57
GA + + A++++ +E HTL NA+R+ + ++ PHPS+ +++IR+Q
Sbjct: 9 GASPNLAEASYAIADETHTLGNALRWMIMKNA---------PHPSENKIHIRIQ 53
>gi|284161839|ref|YP_003400462.1| RNA polymerase dimerization [Archaeoglobus profundus DSM 5631]
gi|284011836|gb|ADB57789.1| RNA polymerase dimerization [Archaeoglobus profundus DSM 5631]
Length = 86
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVL 67
D + + EDHT N ++ L +D V Y IPHP R + V+T E +
Sbjct: 9 DGNYVKLEIRGEDHTYLNLLQHYLLEDEDVEIARYYIPHPLQDRAELVVKTKSKNPLEAI 68
Query: 68 KDSCQELMLMC 78
K++ ++++ C
Sbjct: 69 KEANEKIVKAC 79
>gi|409095587|ref|ZP_11215611.1| DNA-directed RNA polymerase subunit L [Thermococcus zilligii AN1]
Length = 95
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTG-DPAREVLKDS 70
F L EDHT AN + L++D V F YSI HP + +V T G + E L +
Sbjct: 15 FYLEGEDHTFANLLVEVLHEDEHVKFAAYSIDHPILMARKPKFKVVTDGKESPEEALGKA 74
Query: 71 CQELMLMCRHVRSTFAKAV 89
Q++ R + AV
Sbjct: 75 AQKIFERAREAFEAWRSAV 93
>gi|148643416|ref|YP_001273929.1| DNA-directed RNA polymerase, subunit L, RpoL [Methanobrevibacter
smithii ATCC 35061]
gi|222445658|ref|ZP_03608173.1| hypothetical protein METSMIALI_01299 [Methanobrevibacter smithii
DSM 2375]
gi|148552433|gb|ABQ87561.1| DNA-directed RNA polymerase, subunit L, RpoL [Methanobrevibacter
smithii ATCC 35061]
gi|222435223|gb|EEE42388.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2375]
Length = 96
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQ 72
F + E H + NA+R L QD V + Y+I HP N+ ++T G R+VLK +
Sbjct: 20 FIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNMTIKTKRGKRPRKVLKKAAS 79
Query: 73 EL 74
+L
Sbjct: 80 QL 81
>gi|261349794|ref|ZP_05975211.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
gi|288860578|gb|EFC92876.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
Length = 95
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQ 72
F + E H + NA+R L QD V + Y+I HP N+ ++T G R+VLK +
Sbjct: 19 FIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNMTIKTKRGKRPRKVLKKAAS 78
Query: 73 EL 74
+L
Sbjct: 79 QL 80
>gi|347522733|ref|YP_004780303.1| RNA polymerase dimerization [Pyrolobus fumarii 1A]
gi|343459615|gb|AEM38051.1| RNA polymerase dimerization [Pyrolobus fumarii 1A]
Length = 95
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 16 LTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTGDPAREVLKDSCQE 73
L EDHT+AN + + P VT+ Y I HP D V I T P +VL++ E
Sbjct: 18 LRGEDHTMANLIVKLAIRKPHVTYAAYRIDHPLVDDPVVVIATDGTVSPI-DVLENVLNE 76
Query: 74 LMLMCRHVRSTFAK 87
++ +C + F K
Sbjct: 77 IVKLCDEFKEKFEK 90
>gi|356577658|ref|XP_003556941.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB11-like [Glycine max]
Length = 75
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRV 56
++F++ E+HT+ N +R L++DP V Y +PH ++ +R+
Sbjct: 31 SSFTIEXEEHTINNILRMQLHRDPNVLIVRYKLPHALQYKIIVRL 75
>gi|226470082|emb|CAX70322.1| hypotherical protein [Schistosoma japonicum]
Length = 66
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 31 LNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREV------LKDSCQEL 74
L +DPRV F GY PHP + ++ IRV T PA V LKD E+
Sbjct: 6 LLKDPRVLFAGYKAPHPLEHKIVIRVH-TAHPATPVDVFVSALKDLISEI 54
>gi|226294779|gb|EEH50199.1| predicted protein [Paracoccidioides brasiliensis Pb18]
Length = 56
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 44 IPHPSDARVNIRVQTTG-DPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSE 96
+PHPS+A++N+R+QT A VL+ +LM +C V TF +A + F S+
Sbjct: 1 MPHPSEAKMNLRIQTYDTTTAIAVLEKGFDDLMELCDVVTETFTEAKNAFDGSK 54
>gi|308798741|ref|XP_003074150.1| RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa
polypeptide (ISS) [Ostreococcus tauri]
gi|116000322|emb|CAL50002.1| RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa
polypeptide (ISS) [Ostreococcus tauri]
Length = 230
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 31 LNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAR-EVLKDSCQELMLMCRHVRSTFAKAV 89
L+++P V F GY PHP+D RV ++V T + + L+D+ L + FA +
Sbjct: 21 LHKNPDVVFAGYKNPHPTDHRVILKVHTNANTTPVQALRDAVTNLRAEVSDIAQQFADEI 80
Query: 90 DDFRTSEK 97
+ R ++
Sbjct: 81 NAIRRHQR 88
>gi|302663304|ref|XP_003023296.1| hypothetical protein TRV_02570 [Trichophyton verrucosum HKI 0517]
gi|291187286|gb|EFE42678.1| hypothetical protein TRV_02570 [Trichophyton verrucosum HKI 0517]
Length = 135
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 5 AFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGY 42
A G S A F+ +EDHTL N +R L Q+ V F GY
Sbjct: 45 ALGVPSTAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGY 82
>gi|330040637|ref|XP_003239979.1| DNA-directed RNA polymerase II complex subunit Rpb11 [Cryptomonas
paramecium]
gi|327206905|gb|AEA39081.1| DNA-directed RNA polymerase II complex subunit Rpb11 [Cryptomonas
paramecium]
Length = 101
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 6 FGDQSN---ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD- 61
+ D+ N +F + EDHT+ + ++ L + P V F GY HP + + +++ T G
Sbjct: 15 YKDKDNVNYGSFRIKNEDHTIGSLIQKQLLKHPDVIFSGYKKFHPLEKYIFLKIITNGHK 74
Query: 62 -PAR---EVLKDSCQELMLM 77
P + VLKD + L+
Sbjct: 75 TPIQVLDSVLKDLYIQFSLL 94
>gi|413937805|gb|AFW72356.1| hypothetical protein ZEAMMB73_054239 [Zea mays]
Length = 68
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 31 LNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
L++DP V F GY +PHP ++ +R+ TT
Sbjct: 3 LHRDPNVLFAGYKLPHPLQYKIIVRIHTTS 32
>gi|162605706|ref|XP_001713368.1| dna directed RNA polymerase II 13.6 kDa chain [Guillardia theta]
gi|13794300|gb|AAK39677.1|AF083031_34 dna directed RNA polymerase II 13.6 kDa chain [Guillardia theta]
Length = 108
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 7 GDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAR 64
+++ F ED T+ + + L V FCGY HP D + ++++T DP
Sbjct: 25 NNKNTKEFLFENEDATMGEILVYKLENHKNVLFCGYKKLHPLDNNIFLKIKTNSFTDPVL 84
Query: 65 EVLKDSCQELMLMCRHVRS 83
E L+ + +E+ + ++++
Sbjct: 85 E-LEWAIKEIYVDLSYIQT 102
>gi|15897236|ref|NP_341841.1| DNA-directed RNA polymerase subunit L (rpoL) [Sulfolobus
solfataricus P2]
gi|284174481|ref|ZP_06388450.1| DNA-directed RNA polymerase, subunit L (rpoL) [Sulfolobus
solfataricus 98/2]
gi|384433747|ref|YP_005643105.1| RNA polymerase dimerization [Sulfolobus solfataricus 98/2]
gi|21263959|sp|Q980K0.1|RPOL_SULSO RecName: Full=DNA-directed RNA polymerase subunit L
gi|167013265|pdb|2PA8|L Chain L, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
SULFOLOBUS Solfataricus Rna Polymerase
gi|167744889|pdb|2PMZ|L Chain L, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744900|pdb|2PMZ|X Chain X, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782152|pdb|3HKZ|L Chain L, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
gi|239782165|pdb|3HKZ|V Chain V, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
gi|13813435|gb|AAK40631.1| DNA-directed RNA polymerase, subunit L (rpoL) [Sulfolobus
solfataricus P2]
gi|261601901|gb|ACX91504.1| RNA polymerase dimerization [Sulfolobus solfataricus 98/2]
Length = 92
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLK 68
EDHTL N + TL + V+F Y PHP ++ +++ T G P +LK
Sbjct: 20 EDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLK 71
>gi|336121020|ref|YP_004575795.1| DNA-directed RNA polymerase subunit L [Methanothermococcus
okinawensis IH1]
gi|334855541|gb|AEH06017.1| DNA-directed RNA polymerase subunit L [Methanothermococcus
okinawensis IH1]
Length = 101
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 9 QSNATFSLTEEDHTLANAVR-FTLNQDPRVTFCGYSIPHP----------SDARVNIRVQ 57
+++ L ++DH+L N ++ L + +V Y I HP S+ ++ ++
Sbjct: 13 KNSIEVELIDDDHSLCNLLKDILLEKKDKVIMASYVIEHPVLNPKTGRYISNPKLTVKT- 71
Query: 58 TTGDPAREVLKDSCQELMLMC 78
T G+ A EVLK+S +E++ +C
Sbjct: 72 TDGNDAEEVLKESLKEVIDLC 92
>gi|384158076|ref|YP_005540149.1| mannan endo-1,4-beta-mannosidase [Bacillus amyloliquefaciens
TA208]
gi|384167103|ref|YP_005548481.1| beta-mannanase [Bacillus amyloliquefaciens XH7]
gi|328552164|gb|AEB22656.1| exported mannan endo-1,4-beta-mannosidase [Bacillus
amyloliquefaciens TA208]
gi|341826382|gb|AEK87633.1| beta-mannanase [Bacillus amyloliquefaciens XH7]
Length = 364
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYS 43
GAFG +NATFS+TE AN ++ + Q P V C YS
Sbjct: 60 GAFGGYTNATFSMTE-----ANRIKNAIGQSPAVYACDYS 94
>gi|305663458|ref|YP_003859746.1| RNA polymerase dimerisation [Ignisphaera aggregans DSM 17230]
gi|304378027|gb|ADM27866.1| RNA polymerase dimerisation [Ignisphaera aggregans DSM 17230]
Length = 108
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 14 FSLTEED-HTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAREVLKDS 70
F L +ED H+L N + P VT+ Y + HP + I + T G DP E+LK+
Sbjct: 17 FILYDEDKHSLPNLITKIALSKPSVTYAAYILQHPITSYPEIVIMTDGSRDPL-EILKEV 75
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+++ M + ++ +A+ +
Sbjct: 76 IEDIKNMAKQFLASLNEALSN 96
>gi|337285374|ref|YP_004624848.1| DNA-directed RNA polymerase subunit L [Pyrococcus yayanosii CH1]
gi|334901308|gb|AEH25576.1| DNA-directed RNA polymerase subunit L [Pyrococcus yayanosii CH1]
Length = 95
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDA--RVNIRVQTTGD--PAREVLKD 69
F L EDHT AN + L ++ + F Y+I HP + RV T G P R L++
Sbjct: 15 FYLEGEDHTFANLLVEILRENKHIKFAAYTIEHPITMARKPRFRVVTDGKVTPER-ALEE 73
Query: 70 SCQELMLMCRHVRSTFAKAV 89
+ +++ + + KAV
Sbjct: 74 AAKKIFEKAKETLEAWEKAV 93
>gi|289192408|ref|YP_003458349.1| RNA polymerase dimerization [Methanocaldococcus sp. FS406-22]
gi|288938858|gb|ADC69613.1| RNA polymerase dimerization [Methanocaldococcus sp. FS406-22]
Length = 99
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP----------SDARVNIRVQTTGDPA 63
L EDH+L N ++ L V YSI HP S+ ++ I + DP
Sbjct: 15 IELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEGTDPI 74
Query: 64 REVLKDSCQELMLMC 78
EVLK+ ++++ MC
Sbjct: 75 -EVLKEGLRDIIKMC 88
>gi|15668563|ref|NP_247361.1| DNA-directed RNA polymerase subunit L [Methanocaldococcus
jannaschii DSM 2661]
gi|2500636|sp|Q57832.1|RPOL_METJA RecName: Full=DNA-directed RNA polymerase subunit L
gi|1499176|gb|AAB98373.1| DNA-directed RNA polymerase, subunit L (rpoL) [Methanocaldococcus
jannaschii DSM 2661]
Length = 99
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP----------SDARVNIRVQTTGDPA 63
L EDH+L N ++ L V YSI HP S+ ++ I + DP
Sbjct: 15 IELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEGTDPL 74
Query: 64 REVLKDSCQELMLMC 78
EVLK+ ++++ MC
Sbjct: 75 -EVLKEGLRDIIKMC 88
>gi|150400628|ref|YP_001324394.1| RNA polymerase dimerisation [Methanococcus aeolicus Nankai-3]
gi|150013331|gb|ABR55782.1| RNA polymerase dimerisation [Methanococcus aeolicus Nankai-3]
Length = 95
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 16 LTEEDHTLANAVR-FTLNQDPRVTFCGYSIPHP-----SDARVN----IRVQTTGDPARE 65
L +DH+L+N ++ L++ +V Y++ HP +D ++ I T G A E
Sbjct: 18 LIHDDHSLSNLLKDMLLDKKDKVVMASYALEHPVLDPETDLHISNPILILKTTEGVNAEE 77
Query: 66 VLKDSCQELMLMCRHVRS 83
VLK++ +E++ +C +V +
Sbjct: 78 VLKEALKEIIDLCNNVMN 95
>gi|383320161|ref|YP_005381002.1| DNA-directed RNA polymerase subunit L [Methanocella conradii
HZ254]
gi|379321531|gb|AFD00484.1| DNA-directed RNA polymerase, subunit L [Methanocella conradii
HZ254]
Length = 94
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG--DPAREVLKDSCQELML 76
EDHTL NA++ +L D V Y I P + + V+TTG DP E +K + + L
Sbjct: 20 EDHTLLNALKASLLNDKDVKVATYDIEFPGISNPVLFVRTTGSEDPI-EAIKKAAKGLAG 78
Query: 77 MCRHVRSTFAKAVDDF 92
C F++ F
Sbjct: 79 ECEAFMELFSQKAKAF 94
>gi|333910815|ref|YP_004484548.1| DNA-directed RNA polymerase subunit L [Methanotorris igneus Kol
5]
gi|333751404|gb|AEF96483.1| DNA-directed RNA polymerase subunit L [Methanotorris igneus Kol
5]
Length = 99
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 14 FSLTEEDHTLANAVR-FTLNQDPRVTFCGYSIPHP----------SDARVNIRVQTTGDP 62
L EDH+L N ++ LN+D V YSI HP S+ ++ ++ + G
Sbjct: 18 VELLNEDHSLCNVLKDILLNKDG-VLMASYSIDHPVLDPNTGRYISNPKLLVKTK-EGIN 75
Query: 63 AREVLKDSCQELMLMC 78
A EVLK++ ++L+ MC
Sbjct: 76 AEEVLKEALKDLIKMC 91
>gi|325969606|ref|YP_004245798.1| DNA-directed RNA polymerase subunit L [Vulcanisaeta moutnovskia
768-28]
gi|323708809|gb|ADY02296.1| DNA-directed RNA polymerase subunit L [Vulcanisaeta moutnovskia
768-28]
Length = 91
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELM 75
E +TL + L + P V + Y + HP V R++T G P +V+K++ E++
Sbjct: 21 ETYTLFAPLIEYLLKRPDVEYAMYDVDHPLTQNVRFRIKTKGKPPLDVIKEAVNEIL 77
>gi|15679317|ref|NP_276434.1| DNA-dependent RNA polymerase subunit L [Methanothermobacter
thermautotrophicus str. Delta H]
gi|11387068|sp|O27372.1|RPOL_METTH RecName: Full=DNA-directed RNA polymerase subunit L
gi|2622422|gb|AAB85795.1| DNA-dependent RNA polymerase, subunit L [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 85
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP------AREVLKDSCQ 72
E HTL N +R L +D +V YSI HP + ++ G P A E L+D C
Sbjct: 18 ETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIR-AGSPKKSLKAAAETLRDRCD 76
Query: 73 E 73
E
Sbjct: 77 E 77
>gi|297620223|ref|YP_003708328.1| RNA polymerase dimerization [Methanococcus voltae A3]
gi|297379200|gb|ADI37355.1| RNA polymerase dimerization [Methanococcus voltae A3]
Length = 94
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP-----SDARVN---IRVQTT-GDPAR 64
F LT EDH+L N ++ L V Y++ HP S ++ + ++T G A
Sbjct: 14 FELTNEDHSLPNILKDILLSKENVIMASYNVEHPVLDPESGKYISNPLLVLETVEGTNAV 73
Query: 65 EVLKDSCQELMLMC 78
E+LK+S +L+ +C
Sbjct: 74 EILKESLSDLIALC 87
>gi|11497823|ref|NP_069045.1| DNA-directed RNA polymerase subunit L [Archaeoglobus fulgidus DSM
4304]
gi|11387069|sp|O30032.1|RPOL_ARCFU RecName: Full=DNA-directed RNA polymerase subunit L
gi|2650437|gb|AAB91026.1| DNA-directed RNA polymerase, subunit L (rpoL) [Archaeoglobus
fulgidus DSM 4304]
Length = 86
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELMLMC 78
E HT N ++ L +D V Y+IPHP I ++T+G E +K + ++++ C
Sbjct: 20 EGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIKTSGVDPLEAVKRANEKIIAAC 79
>gi|256810651|ref|YP_003128020.1| RNA polymerase dimerization [Methanocaldococcus fervens AG86]
gi|256793851|gb|ACV24520.1| RNA polymerase dimerization [Methanocaldococcus fervens AG86]
Length = 99
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP----------SDARVNIRVQTTGDPA 63
L EDH+L N ++ L V YSI HP S+ ++ + + DP
Sbjct: 15 VELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITVITEEGTDPL 74
Query: 64 REVLKDSCQELMLMCRHVRSTFAK 87
EVLK+ ++++ MC + K
Sbjct: 75 -EVLKEGLRDIIEMCNTLLDELKK 97
>gi|307595383|ref|YP_003901700.1| DNA-directed RNA polymerase subunit L [Vulcanisaeta distributa
DSM 14429]
gi|307550584|gb|ADN50649.1| DNA-directed RNA polymerase, subunit L [Vulcanisaeta distributa
DSM 14429]
Length = 91
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELM 75
E +TL + L + P V + Y + HP V R++T G P +V+K++ E++
Sbjct: 21 ETYTLFAPLIEYLLKRPDVEYAMYDVDHPLTQNVRFRIKTKGRPPLDVIKEAVNEIL 77
>gi|374634177|ref|ZP_09706542.1| DNA-directed RNA polymerase, subunit L [Metallosphaera
yellowstonensis MK1]
gi|373523965|gb|EHP68885.1| DNA-directed RNA polymerase, subunit L [Metallosphaera
yellowstonensis MK1]
Length = 90
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
L EDHTL N + L + V++ Y PHP + + +++ T G
Sbjct: 15 LRLAGEDHTLGNLLAGALREVKGVSYASYYQPHPLNDEIVLKIMTDG 61
>gi|374636066|ref|ZP_09707650.1| RNA polymerase dimerization [Methanotorris formicicus Mc-S-70]
gi|373560324|gb|EHP86591.1| RNA polymerase dimerization [Methanotorris formicicus Mc-S-70]
Length = 98
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP----------SDARVNIRVQTTGDPA 63
L EDH+L N ++ L V YSI HP S+ ++ I + G A
Sbjct: 17 VELLNEDHSLCNVLKDILLNKEGVLMASYSIDHPVLDPDTGRCISNPKLLITTE-KGVNA 75
Query: 64 REVLKDSCQELMLMC 78
EVLK++ ++L+ MC
Sbjct: 76 EEVLKEALKDLIKMC 90
>gi|302421254|ref|XP_003008457.1| DNA-directed RNA polymerase II [Verticillium albo-atrum VaMs.102]
gi|261351603|gb|EEY14031.1| DNA-directed RNA polymerase II [Verticillium albo-atrum VaMs.102]
Length = 75
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 37 VTFCGYSIPHPSDARVNIRVQTTG-----DPAREVLKDSCQELMLMCRHVRSTFAKAVDD 91
V GY IPHP+ + + IRVQT G D EV+KD LM H+ F + +
Sbjct: 5 VLMAGYKIPHPNVSEMFIRVQTDGTITPKDAVTEVIKD----LMKDFSHLAQEFIREYEL 60
Query: 92 FRTSEKVQ 99
R E Q
Sbjct: 61 RRVVEARQ 68
>gi|88603581|ref|YP_503759.1| RNA polymerase, dimerisation [Methanospirillum hungatei JF-1]
gi|88189043|gb|ABD42040.1| DNA-directed RNA polymerase, subunit L [Methanospirillum hungatei
JF-1]
Length = 92
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP-SDARVNIRVQTTGDPAREVLKDSCQ 72
SL + HT NA++ + DP V Y I SD + + DP + VL D+C+
Sbjct: 15 ISLAGQGHTFMNALKTEILTDPTVDVANYVIEFQFSDPVLTVTTHNKADPVKPVL-DACR 73
Query: 73 ELMLMCRHVRSTFAKA 88
L C + S+ ++
Sbjct: 74 RLSGQCEELLSSLEQS 89
>gi|261403593|ref|YP_003247817.1| RNA polymerase dimerization [Methanocaldococcus vulcanius M7]
gi|261370586|gb|ACX73335.1| RNA polymerase dimerization [Methanocaldococcus vulcanius M7]
Length = 98
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP----------SDARVNIRVQTTGDPA 63
L EDH+L N ++ L V YSI HP S+ ++ I + DP
Sbjct: 15 VELINEDHSLPNLLKNILLTKKGVKMASYSIDHPLLHPETGRYISNPKMTIITEEGTDPL 74
Query: 64 REVLKDSCQELMLMC 78
EVLK+S ++++ +C
Sbjct: 75 -EVLKESLKDVINLC 88
>gi|19173564|ref|NP_597367.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|19170770|emb|CAD26544.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|449329222|gb|AGE95496.1| DNA-directed RNA polymerase II [Encephalitozoon cuniculi]
Length = 96
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
+ +E HTL N + L +D R F Y + HP+D V +R+ D R++L ++ +
Sbjct: 21 LRIEDETHTLGNLLSEELLEDKRCLFSAYRVEHPADTHVFLRLTADRDCQVRDLLLETLK 80
>gi|159042100|ref|YP_001541352.1| DNA-directed RNA polymerase subunit L [Caldivirga maquilingensis
IC-167]
gi|157920935|gb|ABW02362.1| DNA-directed RNA polymerase subunit L [Caldivirga maquilingensis
IC-167]
Length = 104
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELM 75
ED+T+ + + + QDP V F + + HP + ++++T G +VL+D+ ++
Sbjct: 23 EDYTVMSPLLTYILQDPEVEFATFDMDHPLLRNITLKLRTKGKDPLKVLEDAVNRIL 79
>gi|282164176|ref|YP_003356561.1| DNA-directed RNA polymerase subunit L [Methanocella paludicola
SANAE]
gi|282156490|dbj|BAI61578.1| DNA-directed RNA polymerase subunit L [Methanocella paludicola
SANAE]
Length = 95
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTGDPAREVLKDSCQELML 76
EDHTL NA++ L +D V Y I +P S+ + IR + DP + LK + ++L
Sbjct: 20 EDHTLMNALKSALLRDKAVKVATYDIVYPGISNPILYIRTSKSEDPI-DALKKASKDLAD 78
Query: 77 MCRHVRSTFAK 87
C F K
Sbjct: 79 ECETFIDLFNK 89
>gi|171686472|ref|XP_001908177.1| hypothetical protein [Podospora anserina S mat+]
gi|170943197|emb|CAP68850.1| unnamed protein product [Podospora anserina S mat+]
Length = 140
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLK 68
++ A+F + E HTL NA+R+ + + R+ IP PS+ G A E L+
Sbjct: 65 ETAASFEFSNEGHTLGNALRYVIMRKIRML-----IP-PSE----------GTTAIEALE 108
Query: 69 DSCQELMLMCRHVRSTFAKAVDDFRTSEKVQA 100
+++ +C V F A DDF + A
Sbjct: 109 KGLRDIQELCDVVTDKFVAAADDFEKKKAATA 140
>gi|327401581|ref|YP_004342420.1| DNA-directed RNA polymerase subunit L [Archaeoglobus veneficus
SNP6]
gi|327317089|gb|AEA47705.1| DNA-directed RNA polymerase subunit L [Archaeoglobus veneficus
SNP6]
Length = 86
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELMLMC 78
EDHT N ++ L +D V Y I HP + V+T G + +K++ +++ C
Sbjct: 20 EDHTFLNLLQHYLLEDEDVVVAKYHISHPLVGEPELFVRTNGKNPLDAIKEANEKIAKYC 79
Query: 79 RHVRSTF 85
+ S
Sbjct: 80 EELISQL 86
>gi|410722286|ref|ZP_11361592.1| DNA-directed RNA polymerase, subunit L [Methanobacterium sp.
Maddingley MBC34]
gi|410597321|gb|EKQ51948.1| DNA-directed RNA polymerase, subunit L [Methanobacterium sp.
Maddingley MBC34]
Length = 123
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQT---TGDPAREVLK 68
+T E HTL NA+R L +D V Y I HP + ++ +R + + A E LK
Sbjct: 13 IEITGETHTLCNALRRALMEDKDVEAAAYVIEHPIIGEPKLYLRAKNPKKSLKTAAETLK 72
Query: 69 DSCQE 73
C E
Sbjct: 73 SRCDE 77
>gi|330508815|ref|YP_004385243.1| DNA-directed RNA polymerase subunit L [Methanosaeta concilii GP6]
gi|328929623|gb|AEB69425.1| DNA-directed RNA polymerase subunit L [Methanosaeta concilii GP6]
Length = 91
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLK 68
++ A E HT+ N +R L +D RV Y P R+ T G LK
Sbjct: 10 ENEAVIEFVGEGHTILNLLRTELLKDKRVLMATYDTKFPVMDNPVFRLVTNGADPIIALK 69
Query: 69 DSCQELMLMCRHVRSTFAKAV 89
++ ++ C S +A+AV
Sbjct: 70 EATSRIIDQCDEFSSKYAEAV 90
>gi|396081340|gb|AFN82957.1| DNA-directed RNA polymerase II [Encephalitozoon romaleae SJ-2008]
Length = 96
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQEL 74
E HTL N + + +D R F Y + HP+D V +R+ D R++L ++ + +
Sbjct: 26 ETHTLGNLLCEEMLEDKRCLFSAYRVEHPTDNHVFLRITADKDCQVRDLLLETLKRI 82
>gi|408380975|ref|ZP_11178525.1| DNA-directed RNA polymerase subunit L [Methanobacterium
formicicum DSM 3637]
gi|407816240|gb|EKF86802.1| DNA-directed RNA polymerase subunit L [Methanobacterium
formicicum DSM 3637]
Length = 115
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP 47
+T E HTL NA+R TL +D V Y I HP
Sbjct: 13 IEITGETHTLCNALRKTLMEDKGVEAAAYVIEHP 46
>gi|150400016|ref|YP_001323783.1| RNA polymerase dimerisation [Methanococcus vannielii SB]
gi|166229330|sp|A6URP9.1|RPOL_METVS RecName: Full=DNA-directed RNA polymerase subunit L
gi|150012719|gb|ABR55171.1| RNA polymerase dimerisation [Methanococcus vannielii SB]
Length = 95
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--------SDARVNIRVQTTG 60
+++ L +DH+L+NA++ +L V Y + HP + + ++T G
Sbjct: 11 ENSIELELVNDDHSLSNALKESLLSKKGVVIASYGVEHPVLHPETGRYISNPTLVLKTEG 70
Query: 61 DPAREVLKDSCQELMLMC 78
A +VLK++ ++++ +C
Sbjct: 71 VLAEKVLKEALRDIIDLC 88
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,503,223,900
Number of Sequences: 23463169
Number of extensions: 50060691
Number of successful extensions: 104256
Number of sequences better than 100.0: 795
Number of HSP's better than 100.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 103386
Number of HSP's gapped (non-prelim): 804
length of query: 107
length of database: 8,064,228,071
effective HSP length: 75
effective length of query: 32
effective length of database: 6,304,490,396
effective search space: 201743692672
effective search space used: 201743692672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)