BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033968
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XK67|RPAC2_XENLA DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus
laevis GN=polr1d PE=3 SV=1
Length = 114
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREV 66
++S TF L EEDHTL N++R+ + ++P V FCGYSI HPS+ ++N R+QT G PA E
Sbjct: 20 EESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEP 79
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFR 93
+ EL+ +C+HV +TF ++ +++
Sbjct: 80 FRRGLNELVDVCQHVLNTFETSIKEYK 106
>sp|Q9Y2S0|RPAC2_HUMAN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo
sapiens GN=POLR1D PE=1 SV=1
Length = 133
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + ELM +C+HV F ++ D++
Sbjct: 89 TLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYK 122
>sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus
musculus GN=Polr1d PE=2 SV=1
Length = 133
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N +R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + EL+ +C+HV F ++ D++
Sbjct: 89 ALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYK 122
>sp|P28000|RPAC2_YEAST DNA-directed RNA polymerases I and III subunit RPAC2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPC19 PE=1 SV=1
Length = 142
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
D ++A+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIR+QT G+ A +
Sbjct: 57 DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDA 116
Query: 67 LKDSCQELMLMCRHVRSTFAKAV 89
L+ ++LM +C V S F + +
Sbjct: 117 LQKGLKDLMDLCDVVESKFTEKI 139
>sp|Q6DRI4|RPAC2_DANRE DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio
GN=polr1d PE=3 SV=1
Length = 112
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREV 66
D+ TF L EEDHTL N++R+ + + V FCGYSI HPS++++N R+QT G PA E
Sbjct: 19 DEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEP 78
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDFRTSEK 97
L++ L +C+HV TF + +F+ E+
Sbjct: 79 LRNGLNNLTDVCKHVLQTFEARMKEFKEQEE 109
>sp|Q1RMG8|RPAC2_BOVIN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus
GN=POLR1D PE=2 SV=1
Length = 133
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1 MEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 61 D-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 93
PA E + +LM +C+HV F ++ +++
Sbjct: 89 ALPAVEPFQRGLTDLMNVCQHVLDKFEASIKEYK 122
>sp|Q54ES6|RPC19_DICDI DNA-directed RNA polymerases I and III subunit rpc19
OS=Dictyostelium discoideum GN=rpc19 PE=3 SV=1
Length = 116
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
ATF T+EDHTL NA+ + L ++P+V F GYSIPHPSD R+N+R+QT + A+E L
Sbjct: 36 ATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQESLLQG 95
Query: 71 CQELMLMCRHVRSTFAKAVD 90
++ + RH+ TF A+D
Sbjct: 96 LTDIKDISRHIFETFNNALD 115
>sp|Q09177|RPAC2_SCHPO DNA-directed RNA polymerases I and III subunit RPAC2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc19 PE=2 SV=1
Length = 125
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 4 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDP 62
G D ++ TF + +EDHTL N++R+ + ++P V FCGYSIPHPS+A++N R+QT
Sbjct: 27 GHSADLTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTT 86
Query: 63 AREVLKDSCQELMLMCRHVRSTFAK 87
A +VL+ +L+ +C V F +
Sbjct: 87 AVDVLRKGLDDLIDLCDAVTEKFTE 111
>sp|Q9VIZ0|RPAC2_DROME Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Drosophila melanogaster GN=l(2)37Cg PE=3 SV=1
Length = 105
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 7 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP 62
GD+ N TF T E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ D
Sbjct: 9 GDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDR 68
Query: 63 AREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEKVQAMKIDS 105
A ++LK ++L +C H TF K + +F AMK+++
Sbjct: 69 AIDILKRGLEDLEGLCDHTIVTFEKEMAEF------NAMKVEN 105
>sp|Q61IX2|RPAC2_CAEBR Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Caenorhabditis briggsae GN=CBG10036 PE=3 SV=1
Length = 145
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREV 66
D SN T L EEDHT+ N+++ L++ V FCGY++PHP + ++ RVQT G A EV
Sbjct: 58 DPSNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEV 117
Query: 67 LKDSCQELMLMCRHVRSTFAKAVD 90
L + + + + +R F A +
Sbjct: 118 LVKAFESVEQVFSTIRGKFEAAYE 141
>sp|Q9VJE4|RPB11_DROME DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila
melanogaster GN=Rpb11 PE=3 SV=1
Length = 117
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDS 70
A F++ +EDHTL N +R L +DP V F GY +PHP + + IR+QTT D + +E ++
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNA 90
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
+L+ F A+ +
Sbjct: 91 ITDLLAELSLFEERFKDAIKE 111
>sp|P34476|RPAC2_CAEEL Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Caenorhabditis elegans GN=F58A4.9 PE=3 SV=1
Length = 144
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREV 66
D SN T + EEDHT+ N+++ L++ V FCGY++PHP + ++ RVQT G A EV
Sbjct: 57 DPSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEV 116
Query: 67 LKDSCQELMLMCRHVRSTFAKAVD 90
L + + + + +R F ++ +
Sbjct: 117 LAKAFESVEQIFSTIRGKFEESYE 140
>sp|O08740|RPB11_MOUSE DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus
GN=Polr2j PE=2 SV=1
Length = 117
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRGAIKD 111
>sp|P52435|RPB11_HUMAN DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens
GN=POLR2J PE=1 SV=1
Length = 117
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>sp|Q32P79|RPB11_BOVIN DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus
GN=POLR2J PE=3 SV=1
Length = 117
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQ 72
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D +E ++
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 73 ELMLMCRHVRSTFAKAVDD 91
+L+ + F A+ D
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>sp|Q9H1A7|RPB1C_HUMAN DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens
GN=POLR2J3 PE=2 SV=1
Length = 115
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D
Sbjct: 32 FTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPD 79
>sp|Q9GZM3|RPB1B_HUMAN DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens
GN=POLR2J2 PE=1 SV=1
Length = 115
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
F++ +EDHTL N ++ L +DP+V F GY +PHP + ++ IRVQTT D
Sbjct: 32 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPD 79
>sp|Q4XS21|RPB11_PLACH Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium
chabaudi GN=PC000833.03.0 PE=3 SV=1
Length = 126
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQE 73
F++ EDHT+ N ++ +L QDP+VTF Y PHP + I ++ G ++L D+
Sbjct: 38 FTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNAIEITIRPKGYAGVKLLSDNVHS 97
Query: 74 LMLMCRHVRSTFAKAVDDFR 93
++ +R TFA V ++
Sbjct: 98 ILNQVSTLRETFANRVQKYK 117
>sp|Q60SM4|RPB11_CAEBR Probable DNA-directed RNA polymerase II subunit RPB11
OS=Caenorhabditis briggsae GN=rpb-11 PE=3 SV=1
Length = 122
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-----GDPAREV 66
A F++ +EDHTL N ++ L +DP V F GY PHP + ++ +RVQTT D
Sbjct: 30 AIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNATTPADALTTA 89
Query: 67 LKDSCQELMLMCRHVRSTFAK 87
+ D EL L+ + S K
Sbjct: 90 ITDLVGELSLLEHRIDSAIKK 110
>sp|Q7PVQ9|RPB11_ANOGA DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae
GN=Rpb11 PE=2 SV=2
Length = 117
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
A F++ +EDHTL N +R L +DP V F GY +PHP + + +R+QTT +
Sbjct: 31 AIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSE 80
>sp|Q8IER7|RPB11_PLAF7 Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium
falciparum (isolate 3D7) GN=PF13_0023 PE=3 SV=1
Length = 126
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQE 73
F + EDHT+ N ++ L QDP+V F Y PHP + I ++ G ++L D+
Sbjct: 38 FVIKLEDHTIGNLIKIQLCQDPKVLFAAYRQPHPLQNAIEITIKPKGYAGVKLLSDNVNN 97
Query: 74 LMLMCRHVRSTFAKAVDDFRTS 95
++ ++ FAK + ++ S
Sbjct: 98 ILSQVATLKENFAKKIQKYKES 119
>sp|Q9XVH6|RPB11_CAEEL Probable DNA-directed RNA polymerase II subunit RPB11
OS=Caenorhabditis elegans GN=rpb-11 PE=3 SV=1
Length = 122
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-----GDPAREV 66
A F++ +EDHTL N ++ L +DP V F GY PHP + ++ +R+QTT D
Sbjct: 30 AIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADALTTA 89
Query: 67 LKDSCQELMLMCRHVRSTFAK 87
+ D EL L+ + + K
Sbjct: 90 ITDLVGELSLLEHRIDAAIKK 110
>sp|Q4YZZ7|RPB11_PLABA Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium
berghei (strain Anka) GN=PB000758.01.0 PE=3 SV=1
Length = 126
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQE 73
F++ EDHT+ N ++ +L QDP+VTF Y PHP + I ++ G ++L D+
Sbjct: 38 FTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNVIEITIRPKGYAGVKLLSDNVHT 97
Query: 74 LMLMCRHVRSTFAKAVDDFR 93
++ +R TF V ++
Sbjct: 98 ILNQVSTLRETFVNKVQKYK 117
>sp|P87123|RPB11_SCHPO DNA-directed RNA polymerase II subunit RPB11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb11 PE=1 SV=1
Length = 123
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDS 70
A +L +EDHTLAN + L D RV F GY +PHP + +RVQT D ++V+ D+
Sbjct: 30 AVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVIVDA 89
Query: 71 CQELMLMCRHVRSTFAK 87
+ L+ ++ F +
Sbjct: 90 AKSLITHLEEIKVNFMR 106
>sp|Q38859|RPB11_ARATH DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis
thaliana GN=RPB13.6 PE=2 SV=1
Length = 116
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-----REV 66
A+F++ EDHT+ N VR L++D V F GY +PHP ++ +R+ TT + +
Sbjct: 31 ASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQA 90
Query: 67 LKDSCQELMLMCRHVRSTFAKAVDDF 92
+ D +EL + + AK + F
Sbjct: 91 INDLDKELDYLKNQFEAEVAKFSNQF 116
>sp|Q86JJ5|RPB11_DICDI DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium
discoideum GN=polr2j PE=3 SV=1
Length = 120
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 12 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD 61
+ F++ +EDHT+ N +R L D + F GY +PHP + VNIR+QT +
Sbjct: 31 SMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQTNNN 80
>sp|P38902|RPB11_YEAST DNA-directed RNA polymerase II subunit RPB11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB11 PE=1
SV=1
Length = 120
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 15 SLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQE 73
+ +EDHTL N +R L D +V F Y + HP AR +R+QTT G ++ LK++C
Sbjct: 34 TFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNS 93
Query: 74 LMLMCRHVRSTF 85
++ +++ F
Sbjct: 94 IINKLGALKTNF 105
>sp|Q8U4N1|RPOL_PYRFU DNA-directed RNA polymerase subunit L OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoL
PE=3 SV=1
Length = 95
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDA--RVNIRVQTTGD-PAREVLKDS 70
F L EDHT AN + TL ++P V F Y+I HP + RV T G+ E L+++
Sbjct: 15 FYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGEITPEEALEEA 74
Query: 71 CQELMLMCRHVRSTFAKAV 89
+++ + V + KAV
Sbjct: 75 AKKIFERAKEVLEAWEKAV 93
>sp|P46217|RPOL_SULAC DNA-directed RNA polymerase subunit L OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929
/ NBRC 15157 / NCIMB 11770) GN=rpoL PE=3 SV=1
Length = 90
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREV 66
+Q+ + E+HT+ N ++ L + P V F YS+PHP + I++ T G ARE
Sbjct: 9 EQNYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREA 68
Query: 67 LKDSCQ 72
L + +
Sbjct: 69 LIKAIE 74
>sp|Q5JE88|RPOL_PYRKO DNA-directed RNA polymerase subunit L OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoL PE=3
SV=1
Length = 94
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDA--RVNIRVQTTGDPARE-VLKDS 70
F L EDHT AN + TL+++ VTF GY+I HP + +V T G E L+++
Sbjct: 15 FYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKALEEA 74
Query: 71 CQELMLMCRHVRSTFAKAVD 90
Q++ R V + A++
Sbjct: 75 AQKIFDRAREVLEAWKAAIE 94
>sp|B6YTH7|RPOL_THEON DNA-directed RNA polymerase subunit L OS=Thermococcus onnurineus
(strain NA1) GN=rpoL PE=3 SV=1
Length = 95
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPS--DARVNIRVQTTGDPARE-VLKDS 70
F L EDHT AN + L+++ VTF GY+I HP + RV T G E VL+++
Sbjct: 15 FYLEGEDHTFANLLNEVLHENEHVTFAGYTIEHPVLMARKPKFRVVTDGKITPEQVLEEA 74
Query: 71 CQELMLMCRHVRSTFAKAVDD 91
Q++ R V + + + +
Sbjct: 75 AQKIFDRARAVLEAWKEVLGE 95
>sp|Q9V2M4|RPOL_PYRAB DNA-directed RNA polymerase subunit L OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rpoL PE=3 SV=1
Length = 95
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTGDPARE 65
+Q F L EDHT AN + TL ++P V F Y+I HP + RV T G E
Sbjct: 9 EQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITPE 68
Query: 66 -VLKDSCQELMLMCRHVRSTFAKAV 89
L+++ +++ + V + KA+
Sbjct: 69 KALEEAAKKIFDRAKEVLDAWEKAI 93
>sp|Q46C10|RPOL_METBF DNA-directed RNA polymerase subunit L OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rpoL PE=3 SV=1
Length = 92
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 16 LTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELM 75
L E HTL N ++ L +D RV Y + + S + + ++T G EVLKD+ +++
Sbjct: 17 LKGETHTLLNILKDLLIKDQRVEIAFYDMKYVSISDPILYIKTDGTNPIEVLKDAASQII 76
Query: 76 LMCRHVRSTFAKAVD 90
C F+KAV+
Sbjct: 77 SQCDEFTDVFSKAVN 91
>sp|P57671|RPOL_PYRHO DNA-directed RNA polymerase subunit L OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
100139 / OT-3) GN=rpoL PE=3 SV=1
Length = 95
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDA--RVNIRVQTTGDPARE-VLKDS 70
F L EDHT AN + L +DP V F Y+I HP + RV T G E L+++
Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPITMARKPRFRVVTDGKVTPEKALEEA 74
Query: 71 CQELMLMCRHVRSTFAKAV 89
+++ + V + K V
Sbjct: 75 ARKIFNRAKEVLDAWEKVV 93
>sp|C5A5J3|RPOL_THEGJ DNA-directed RNA polymerase subunit L OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=rpoL PE=3 SV=1
Length = 95
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTG-DPAREVLKDS 70
F L EDHT AN + TL++D V F YSI HP + ++ T G + E L+ +
Sbjct: 15 FYLEGEDHTFANLLVETLHEDKHVKFAAYSIDHPILMARKPRFKIVTDGKESPEEALEKA 74
Query: 71 CQELMLMCRHVRSTFAKAVD 90
Q + R V + A++
Sbjct: 75 AQRVFDRARAVLEAWKSAIE 94
>sp|C6A1R5|RPOL_THESM DNA-directed RNA polymerase subunit L OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=rpoL PE=3 SV=1
Length = 95
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 8 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPS--DARVNIRVQTTGDPARE 65
D++ F L EDHT AN + TL+++ VTF Y+I HP + R+ T G E
Sbjct: 9 DKNLLEFYLVGEDHTFANLLSETLHENKHVTFAAYTIEHPVLMARKPRFRISTDGKITPE 68
Query: 66 -VLKDSCQELM 75
L+++ Q++
Sbjct: 69 KALEEAAQKIF 79
>sp|C3N7I8|RPOL_SULIY DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQELMLM 77
EDHTL N + TL + V+F Y PHP ++ +++ T G A ++ L + + + +M
Sbjct: 20 EDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIETVRVM 79
Query: 78 CRH 80
H
Sbjct: 80 ASH 82
>sp|C3NFY8|RPOL_SULIN DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoL PE=3 SV=1
Length = 92
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQELMLM 77
EDHTL N + TL + V+F Y PHP ++ +++ T G A ++ L + + + +M
Sbjct: 20 EDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIETVRVM 79
Query: 78 CRH 80
H
Sbjct: 80 ASH 82
>sp|C3MXM0|RPOL_SULIM DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQELMLM 77
EDHTL N + TL + V+F Y PHP ++ +++ T G A ++ L + + + +M
Sbjct: 20 EDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIETVRVM 79
Query: 78 CRH 80
H
Sbjct: 80 ASH 82
>sp|C3MRD1|RPOL_SULIL DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQELMLM 77
EDHTL N + TL + V+F Y PHP ++ +++ T G A ++ L + + + +M
Sbjct: 20 EDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIETVRVM 79
Query: 78 CRH 80
H
Sbjct: 80 ASH 82
>sp|C4KIP6|RPOL_SULIK DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoL PE=3 SV=1
Length = 92
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQELMLM 77
EDHTL N + TL + V+F Y PHP ++ +++ T G A ++ L + + + +M
Sbjct: 20 EDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIETVRVM 79
Query: 78 CRH 80
H
Sbjct: 80 ASH 82
>sp|C3MZG6|RPOL_SULIA DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoL PE=3 SV=1
Length = 92
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQELMLM 77
EDHTL N + TL + V+F Y PHP ++ +++ T G A ++ L + + + +M
Sbjct: 20 EDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIETVRVM 79
Query: 78 CRH 80
H
Sbjct: 80 ASH 82
>sp|B1L7Q7|RPOL_KORCO DNA-directed RNA polymerase subunit L OS=Korarchaeum cryptofilum
(strain OPF8) GN=rpoL PE=3 SV=1
Length = 98
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHP--SDARVNIRVQTTGDPAREVLKDSCQELML 76
E HTL + + LN V F GY +PHP ++ + +RV+ +P REVLK + + LM
Sbjct: 20 ETHTLLSPLVEELNSLDEVEFAGYDVPHPLKEESVLFLRVKEGMNP-REVLKGAIRRLME 78
Query: 77 MCRHVRSTFAKAVDDFRTS 95
+ ++F + + + +
Sbjct: 79 KYEIIGNSFIEELSSLKVN 97
>sp|Q980K0|RPOL_SULSO DNA-directed RNA polymerase subunit L OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoL
PE=1 SV=1
Length = 92
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD--PAREVLK 68
EDHTL N + TL + V+F Y PHP ++ +++ T G P +LK
Sbjct: 20 EDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLK 71
>sp|Q57832|RPOL_METJA DNA-directed RNA polymerase subunit L OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoL PE=1 SV=1
Length = 99
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 14 FSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP----------SDARVNIRVQTTGDPA 63
L EDH+L N ++ L V YSI HP S+ ++ I + DP
Sbjct: 15 IELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEGTDPL 74
Query: 64 REVLKDSCQELMLMC 78
EVLK+ ++++ MC
Sbjct: 75 -EVLKEGLRDIIKMC 88
>sp|O27372|RPOL_METTH DNA-directed RNA polymerase subunit L OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoL PE=3 SV=1
Length = 85
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDP------AREVLKDSCQ 72
E HTL N +R L +D +V YSI HP + ++ G P A E L+D C
Sbjct: 18 ETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIR-AGSPKKSLKAAAETLRDRCD 76
Query: 73 E 73
E
Sbjct: 77 E 77
>sp|Q96YA7|RPOL_SULTO DNA-directed RNA polymerase subunit L OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=rpoL PE=3 SV=1
Length = 93
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTG 60
E+HT+ N ++ L + P V F YS PHP + +++ T G
Sbjct: 20 EEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDG 61
>sp|O30032|RPOL_ARCFU DNA-directed RNA polymerase subunit L OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoL PE=3 SV=1
Length = 86
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELMLMC 78
E HT N ++ L +D V Y+IPHP I ++T+G E +K + ++++ C
Sbjct: 20 EGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIKTSGVDPLEAVKRANEKIIAAC 79
>sp|A4YHV0|RPOL_METS5 DNA-directed RNA polymerase subunit L OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=rpoL PE=3 SV=1
Length = 90
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 19 EDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPA-REVLKDSCQELMLM 77
EDHTL N + L V Y +PHP + I+++T G + RE L + +++ ++
Sbjct: 20 EDHTLGNLIAGRLRSVKGVILATYYLPHPLKDELVIKIKTDGTISPREALNRAIEDVKVL 79
>sp|A6URP9|RPOL_METVS DNA-directed RNA polymerase subunit L OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoL PE=3 SV=1
Length = 95
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 9 QSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHP--------SDARVNIRVQTTG 60
+++ L +DH+L+NA++ +L V Y + HP + + ++T G
Sbjct: 11 ENSIELELVNDDHSLSNALKESLLSKKGVVIASYGVEHPVLHPETGRYISNPTLVLKTEG 70
Query: 61 DPAREVLKDSCQELMLMC 78
A +VLK++ ++++ +C
Sbjct: 71 VLAEKVLKEALRDIIDLC 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,126,332
Number of Sequences: 539616
Number of extensions: 1201443
Number of successful extensions: 2476
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2416
Number of HSP's gapped (non-prelim): 80
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)