Query 033969
Match_columns 107
No_of_seqs 156 out of 1069
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:18:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 4.1E-47 8.8E-52 246.2 9.0 106 1-106 1-107 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.5E-46 3.2E-51 247.6 10.6 105 2-106 6-112 (153)
3 PLN00172 ubiquitin conjugating 100.0 1.4E-43 3.1E-48 233.7 12.4 106 1-106 1-107 (147)
4 KOG0419 Ubiquitin-protein liga 100.0 5.1E-44 1.1E-48 226.8 8.4 105 2-106 5-110 (152)
5 PTZ00390 ubiquitin-conjugating 100.0 1.1E-42 2.4E-47 230.6 12.3 105 2-106 3-108 (152)
6 KOG0418 Ubiquitin-protein liga 100.0 1.4E-38 3.1E-43 212.5 8.4 105 2-106 4-113 (200)
7 PF00179 UQ_con: Ubiquitin-con 100.0 2.1E-38 4.5E-43 207.3 8.5 102 5-106 1-105 (140)
8 KOG0421 Ubiquitin-protein liga 100.0 1.6E-38 3.5E-43 204.6 6.6 105 2-106 30-135 (175)
9 cd00195 UBCc Ubiquitin-conjuga 100.0 1.6E-37 3.4E-42 203.4 11.0 103 4-106 2-106 (141)
10 KOG0425 Ubiquitin-protein liga 100.0 1.4E-37 3.1E-42 202.5 9.8 104 2-105 6-124 (171)
11 KOG0424 Ubiquitin-protein liga 100.0 1.3E-37 2.8E-42 200.1 8.6 106 2-107 5-118 (158)
12 KOG0426 Ubiquitin-protein liga 100.0 6.6E-37 1.4E-41 194.7 8.4 104 1-104 4-122 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 1.3E-35 2.7E-40 195.2 10.8 103 4-106 1-106 (145)
14 KOG0427 Ubiquitin conjugating 100.0 1.9E-34 4.2E-39 183.2 10.1 104 1-105 15-120 (161)
15 KOG0422 Ubiquitin-protein liga 100.0 2.4E-33 5.3E-38 179.6 8.2 102 1-103 2-105 (153)
16 KOG0894 Ubiquitin-protein liga 100.0 2.9E-32 6.3E-37 185.7 9.9 102 2-105 6-111 (244)
17 KOG0420 Ubiquitin-protein liga 100.0 4.9E-32 1.1E-36 178.9 6.2 103 1-106 28-135 (184)
18 KOG0416 Ubiquitin-protein liga 100.0 2E-30 4.3E-35 171.1 6.3 100 1-103 3-103 (189)
19 KOG0423 Ubiquitin-protein liga 100.0 1.1E-29 2.5E-34 168.2 4.7 101 3-103 12-112 (223)
20 KOG0428 Non-canonical ubiquiti 99.9 2.1E-25 4.6E-30 154.9 8.5 99 2-103 12-113 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 3.4E-20 7.4E-25 148.4 5.8 103 4-106 854-966 (1101)
22 KOG0895 Ubiquitin-conjugating 99.7 1.1E-17 2.4E-22 134.2 9.4 104 3-106 284-399 (1101)
23 KOG0429 Ubiquitin-conjugating 99.5 4.9E-14 1.1E-18 97.0 8.2 90 5-95 23-115 (258)
24 KOG0896 Ubiquitin-conjugating 99.5 5.6E-14 1.2E-18 90.0 6.8 102 4-105 8-117 (138)
25 KOG0897 Predicted ubiquitin-co 98.8 2.1E-09 4.6E-14 67.3 1.7 57 49-105 12-71 (122)
26 PF08694 UFC1: Ubiquitin-fold 98.7 1.5E-08 3.2E-13 65.9 2.5 95 3-103 26-135 (161)
27 PF14461 Prok-E2_B: Prokaryoti 98.6 5.1E-08 1.1E-12 63.3 4.9 58 46-103 34-97 (133)
28 PF05743 UEV: UEV domain; Int 98.4 1E-06 2.2E-11 56.5 5.7 69 30-103 32-108 (121)
29 KOG3357 Uncharacterized conser 98.1 5.6E-06 1.2E-10 53.3 4.5 95 3-103 29-138 (167)
30 PF05773 RWD: RWD domain; Int 97.5 0.00052 1.1E-08 42.3 6.0 70 3-73 3-74 (113)
31 smart00591 RWD domain in RING 97.1 0.0045 9.8E-08 37.8 7.3 64 9-72 1-65 (107)
32 KOG2391 Vacuolar sorting prote 96.9 0.0064 1.4E-07 45.1 7.3 69 30-103 52-128 (365)
33 PF14457 Prok-E2_A: Prokaryoti 95.6 0.07 1.5E-06 35.8 6.6 56 51-106 56-121 (162)
34 PF14462 Prok-E2_E: Prokaryoti 94.2 0.25 5.3E-06 31.7 5.9 52 20-72 13-66 (122)
35 KOG0309 Conserved WD40 repeat- 91.1 1.5 3.2E-05 36.4 7.5 66 5-71 424-490 (1081)
36 PF09765 WD-3: WD-repeat regio 87.8 1.6 3.6E-05 31.9 5.3 56 4-68 102-157 (291)
37 KOG4018 Uncharacterized conser 85.4 3.1 6.8E-05 29.2 5.3 61 7-70 8-71 (215)
38 smart00340 HALZ homeobox assoc 83.7 1.1 2.3E-05 23.4 1.9 14 3-16 21-34 (44)
39 cd00421 intradiol_dioxygenase 76.5 5.2 0.00011 26.1 3.8 24 47-70 65-89 (146)
40 cd03457 intradiol_dioxygenase_ 74.7 5.9 0.00013 27.2 3.8 24 47-70 86-109 (188)
41 cd03459 3,4-PCD Protocatechuat 70.5 8.7 0.00019 25.6 3.8 24 47-70 72-100 (158)
42 PF06113 BRE: Brain and reprod 65.6 21 0.00045 26.9 5.2 25 48-72 306-330 (333)
43 PF14460 Prok-E2_D: Prokaryoti 62.4 3.7 8.1E-05 27.7 0.8 13 76-88 98-110 (175)
44 TIGR02423 protocat_alph protoc 61.1 16 0.00034 25.3 3.7 24 47-70 96-124 (193)
45 PF14135 DUF4302: Domain of un 60.5 39 0.00085 23.7 5.8 48 2-60 10-57 (235)
46 cd03463 3,4-PCD_alpha Protocat 58.4 19 0.00041 24.7 3.7 24 47-70 92-120 (185)
47 PF03366 YEATS: YEATS family; 57.8 38 0.00082 20.1 4.8 40 31-72 2-41 (84)
48 PF06113 BRE: Brain and reprod 57.7 19 0.00042 27.0 3.9 42 30-77 53-95 (333)
49 TIGR03737 PRTRC_B PRTRC system 57.5 5.6 0.00012 28.2 1.1 18 72-89 132-152 (228)
50 KOG0177 20S proteasome, regula 54.8 3.1 6.8E-05 28.7 -0.5 25 81-105 135-159 (200)
51 KOG4445 Uncharacterized conser 53.1 21 0.00046 26.7 3.4 25 48-72 45-69 (368)
52 KOG3285 Spindle assembly check 50.7 32 0.00069 23.7 3.8 41 3-43 121-161 (203)
53 PF12065 DUF3545: Protein of u 50.4 12 0.00026 20.9 1.4 13 3-15 36-48 (59)
54 PF04881 Adeno_GP19K: Adenovir 49.9 19 0.00041 23.4 2.5 30 27-56 44-74 (139)
55 KOG1047 Bifunctional leukotrie 49.5 19 0.00041 29.0 2.9 29 43-72 248-279 (613)
56 TIGR02439 catechol_proteo cate 45.3 38 0.00081 24.9 3.7 24 47-70 180-221 (285)
57 KOG1814 Predicted E3 ubiquitin 45.2 94 0.002 24.3 5.9 21 50-70 76-97 (445)
58 PF00845 Gemini_BL1: Geminivir 44.8 61 0.0013 23.5 4.6 48 28-76 100-156 (276)
59 KOG0700 Protein phosphatase 2C 44.5 62 0.0013 24.9 4.9 72 6-82 250-330 (390)
60 cd03461 1,2-HQD Hydroxyquinol 43.0 43 0.00094 24.5 3.7 24 47-70 172-213 (277)
61 cd03464 3,4-PCD_beta Protocate 42.6 45 0.00098 23.5 3.7 24 47-70 122-152 (220)
62 cd05845 Ig2_L1-CAM_like Second 42.1 78 0.0017 19.1 4.5 26 45-72 16-41 (95)
63 TIGR02422 protocat_beta protoc 40.3 51 0.0011 23.2 3.7 24 47-70 117-147 (220)
64 cd03460 1,2-CTD Catechol 1,2 d 40.1 51 0.0011 24.2 3.8 24 47-70 176-217 (282)
65 TIGR02438 catachol_actin catec 39.7 53 0.0012 24.1 3.8 24 47-70 184-225 (281)
66 KOG4274 Positive cofactor 2 (P 37.6 69 0.0015 26.2 4.3 48 6-64 624-675 (742)
67 TIGR02465 chlorocat_1_2 chloro 37.2 64 0.0014 23.2 3.8 24 47-70 150-191 (246)
68 PF11745 DUF3304: Protein of u 37.0 14 0.00031 23.2 0.5 22 80-101 49-70 (118)
69 COG2819 Predicted hydrolase of 36.8 66 0.0014 23.4 3.9 29 43-71 16-46 (264)
70 TIGR01633 phi3626_gp14_N putat 35.6 1E+02 0.0023 18.7 6.2 55 4-59 65-121 (124)
71 TIGR02296 HpaC 4-hydroxyphenyl 34.8 23 0.0005 23.2 1.2 30 62-91 36-68 (154)
72 PF05709 Sipho_tail: Phage tai 34.6 1.5E+02 0.0032 20.2 5.5 58 4-63 55-115 (249)
73 COG3866 PelB Pectate lyase [Ca 33.4 93 0.002 23.4 4.2 40 31-70 197-239 (345)
74 COG0544 Tig FKBP-type peptidyl 31.5 1.5E+02 0.0032 23.2 5.2 15 48-62 209-223 (441)
75 PF13950 Epimerase_Csub: UDP-g 31.2 26 0.00055 19.5 0.8 12 92-103 37-48 (62)
76 cd03458 Catechol_intradiol_dio 31.0 91 0.002 22.6 3.8 24 47-70 156-197 (256)
77 PF00779 BTK: BTK motif; Inte 29.9 18 0.0004 17.6 0.1 16 73-88 2-18 (32)
78 COG4957 Predicted transcriptio 29.4 28 0.00061 22.9 0.9 17 50-66 104-120 (148)
79 TIGR03615 RutF pyrimidine util 29.3 33 0.00073 22.5 1.3 66 8-90 4-72 (156)
80 KOG3203 Mitochondrial/chloropl 28.5 34 0.00074 22.9 1.2 14 72-86 50-63 (165)
81 COG1853 Conserved protein/doma 28.0 46 0.00099 22.1 1.8 31 62-92 44-77 (176)
82 PRK15486 hpaC 4-hydroxyphenyla 27.8 1.9E+02 0.0042 19.3 6.9 66 6-90 6-76 (170)
83 cd03462 1,2-CCD chlorocatechol 27.4 1.1E+02 0.0025 22.0 3.8 25 46-70 150-192 (247)
84 PF00775 Dioxygenase_C: Dioxyg 27.0 48 0.0011 22.6 1.8 24 47-70 83-124 (183)
85 PF09458 H_lectin: H-type lect 25.7 1.1E+02 0.0025 16.8 3.0 21 49-70 2-22 (72)
86 PF09606 Med15: ARC105 or Med1 24.6 25 0.00054 29.5 0.0 22 50-71 716-737 (799)
87 PF12259 DUF3609: Protein of u 24.0 60 0.0013 24.6 1.9 22 2-23 33-54 (361)
88 PF04314 DUF461: Protein of un 23.9 1E+02 0.0022 18.9 2.7 27 32-58 77-103 (110)
89 PRK00907 hypothetical protein; 23.8 32 0.0007 20.9 0.4 11 53-63 11-21 (92)
90 PF09943 DUF2175: Uncharacteri 22.4 99 0.0022 19.2 2.4 20 31-52 1-20 (101)
91 PF07809 RTP801_C: RTP801 C-te 22.3 2.2E+02 0.0048 18.1 5.9 56 3-61 21-82 (116)
92 cd07305 Porin3_Tom40 Transloca 22.0 2.1E+02 0.0046 20.4 4.4 37 5-41 9-49 (279)
93 KOG0142 Isopentenyl pyrophosph 21.7 2.2E+02 0.0049 20.1 4.2 54 1-61 108-161 (225)
94 PF11819 DUF3338: Domain of un 21.5 49 0.0011 21.7 0.9 13 56-68 69-85 (138)
95 PRK11700 hypothetical protein; 21.3 2.9E+02 0.0063 19.1 6.2 72 29-106 87-186 (187)
96 PRK14052 effector protein; Pro 20.8 36 0.00077 25.7 0.2 32 74-105 347-386 (387)
97 PF06943 zf-LSD1: LSD1 zinc fi 20.8 59 0.0013 14.9 0.9 12 59-70 9-20 (25)
98 PF12627 PolyA_pol_RNAbd: Prob 20.5 1.2E+02 0.0026 16.2 2.3 17 2-18 23-39 (64)
99 KOG1976 Inositol polyphosphate 20.0 31 0.00066 26.0 -0.3 16 48-63 309-324 (391)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-47 Score=246.16 Aligned_cols=106 Identities=75% Similarity=1.373 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccC
Q 033969 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (107)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (107)
||.+||.||+++|+++++++|++.++++|+++|+++|.||.+||||||.|++.|.||++||++||+|+|.|+||||||+.
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCCCcCCccCCHhhhh-ccc
Q 033969 81 NGSICLDILKEQWSPALTISKVW-SIN 106 (107)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il-~i~ 106 (107)
.|.||+|+|+++|+|+++|++|| ||+
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~ 107 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSIC 107 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHH
Confidence 99999999999999999999998 875
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=247.63 Aligned_cols=105 Identities=61% Similarity=1.245 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCC-CCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccC
Q 033969 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (107)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (107)
|.+||+||+++|++++++++++.+.++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.++||||||+.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 789999999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCCCcCCccCCHhhhh-ccc
Q 033969 81 NGSICLDILKEQWSPALTISKVW-SIN 106 (107)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il-~i~ 106 (107)
+|.||+|+|++.|+|+++|++|| |||
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~ 112 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQ 112 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHH
Confidence 99999999999999999999998 886
No 3
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.4e-43 Score=233.72 Aligned_cols=106 Identities=75% Similarity=1.338 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccC
Q 033969 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (107)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (107)
||.+||+||+++|++++++++.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++||||+.
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCCCcCCccCCHhhhh-ccc
Q 033969 81 NGSICLDILKEQWSPALTISKVW-SIN 106 (107)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il-~i~ 106 (107)
+|.||+++|.++|+|++||++|| +|+
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~ 107 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSIS 107 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHH
Confidence 99999999999999999999998 886
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-44 Score=226.85 Aligned_cols=105 Identities=46% Similarity=1.028 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccCC
Q 033969 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (107)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (107)
|.+||+||+++|+++++.|+++.|.++|++.|.+.|.||++|||+||+|++.++|+++||.+||.|+|++..|||||+.+
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeccCCCCcCCccCCHhhhh-ccc
Q 033969 82 GSICLDILKEQWSPALTISKVW-SIN 106 (107)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il-~i~ 106 (107)
|.+|+|+|...|+|+|++.+|| |||
T Consensus 85 G~iClDiLqNrWsp~Ydva~ILtsiQ 110 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVASILTSIQ 110 (152)
T ss_pred CcchHHHHhcCCCCchhHHHHHHHHH
Confidence 9999999999999999999999 987
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-42 Score=230.57 Aligned_cols=105 Identities=48% Similarity=0.910 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccCC
Q 033969 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (107)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (107)
++|||+||++++++++++++.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+++
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeccCCCCcCCccCCHhhhh-ccc
Q 033969 82 GSICLDILKEQWSPALTISKVW-SIN 106 (107)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il-~i~ 106 (107)
|.||+++|.++|+|++||++|| +|+
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~ 108 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQ 108 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHH
Confidence 9999999999999999999998 876
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-38 Score=212.46 Aligned_cols=105 Identities=49% Similarity=0.898 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHhhcCC---CCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccc
Q 033969 2 ASKRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNI 78 (107)
Q Consensus 2 a~~RL~~E~~~l~~~~---~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 78 (107)
|.+|+++|.+++.+++ ..++.+...++|+.+..+.|.||++||||||.|.+.|.+|++|||+||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 5799999999999987 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCcEeccCCCCcCCccCCHhhhh-ccc
Q 033969 79 NS-NGSICLDILKEQWSPALTISKVW-SIN 106 (107)
Q Consensus 79 ~~-~G~icl~~l~~~W~p~~~i~~il-~i~ 106 (107)
++ +|.||+|+|.++|++++|+.++| |||
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQ 113 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQ 113 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHH
Confidence 95 89999999999999999999998 887
No 7
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.1e-38 Score=207.31 Aligned_cols=102 Identities=57% Similarity=1.158 Sum_probs=93.1
Q ss_pred HHHHHHHHhhcCCCCCeeEeecCC-CCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccCCCc
Q 033969 5 RILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (107)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 83 (107)
||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCC-cCCccCCHhhhh-ccc
Q 033969 84 ICLDILKE-QWSPALTISKVW-SIN 106 (107)
Q Consensus 84 icl~~l~~-~W~p~~~i~~il-~i~ 106 (107)
||+++|.. .|+|+++|.+|| +|+
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~ 105 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQ 105 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHH
T ss_pred chhhhhhcccCCcccccccHHHHHH
Confidence 99999975 599999999998 775
No 8
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=204.59 Aligned_cols=105 Identities=42% Similarity=0.836 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccCC
Q 033969 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (107)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (107)
.+|||++|+..|+....+|+++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||+.||.|+|+|+.||||||..
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~ 109 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLS 109 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeccCCCCcCCccCCHhhhh-ccc
Q 033969 82 GSICLDILKEQWSPALTISKVW-SIN 106 (107)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il-~i~ 106 (107)
|.||+|+|.++|+..|.++.|| |||
T Consensus 110 GnIcLDILkdKWSa~YdVrTILLSiQ 135 (175)
T KOG0421|consen 110 GNICLDILKDKWSAVYDVRTILLSIQ 135 (175)
T ss_pred ccchHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999998 987
No 9
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.6e-37 Score=203.44 Aligned_cols=103 Identities=60% Similarity=1.180 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccCCCc
Q 033969 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (107)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 83 (107)
|||++|++++++.++.|+++.+.++|+++|+++|.||++|||+||.|++++.||++||++||+|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCc-CCccCCHhhhh-ccc
Q 033969 84 ICLDILKEQ-WSPALTISKVW-SIN 106 (107)
Q Consensus 84 icl~~l~~~-W~p~~~i~~il-~i~ 106 (107)
||+++|... |+|++++.+|| +|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~ 106 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQ 106 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHH
Confidence 999999876 99999999998 765
No 10
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=202.46 Aligned_cols=104 Identities=44% Similarity=0.972 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCC-CCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccC
Q 033969 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (107)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (107)
|...|+++|++|++++.+|+.+...++ |+++|.|.|.||++|.|+||.|+..+.||.|||.+||+++|+|++|||||++
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 456789999999999999999987765 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCC-------------CcCCccCCHhhhh-cc
Q 033969 81 NGSICLDILK-------------EQWSPALTISKVW-SI 105 (107)
Q Consensus 81 ~G~icl~~l~-------------~~W~p~~~i~~il-~i 105 (107)
+|.+|+++|. |.|+|.+|+++|| ||
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSi 124 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSI 124 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHH
Confidence 9999999993 4699999999987 75
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=200.13 Aligned_cols=106 Identities=39% Similarity=0.868 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecC-----CCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccc
Q 033969 2 ASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHP 76 (107)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~-----~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hp 76 (107)
|..||+.|-+.+.++.+-|+++.|.. .|++.|++.|.|+++|+||||.|.+++.||++||.+||+++|.++.|||
T Consensus 5 ~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HP 84 (158)
T KOG0424|consen 5 ALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHP 84 (158)
T ss_pred HHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCC
Confidence 67899999999999999999998875 3799999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEeccCCCCc--CCccCCHhhhh-cccC
Q 033969 77 NINSNGSICLDILKEQ--WSPALTISKVW-SINN 107 (107)
Q Consensus 77 nv~~~G~icl~~l~~~--W~p~~~i~~il-~i~~ 107 (107)
||+.+|.|||++|.++ |+|+.||.+|| +|||
T Consensus 85 NVypsgtVcLsiL~e~~~W~paitikqiL~gIqd 118 (158)
T KOG0424|consen 85 NVYPSGTVCLSILNEEKDWRPAITIKQILLGIQD 118 (158)
T ss_pred CcCCCCcEehhhhccccCCCchhhHHHHHHHHHH
Confidence 9999999999999765 99999999999 9986
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-37 Score=194.73 Aligned_cols=104 Identities=43% Similarity=0.963 Sum_probs=98.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecC-CCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCcccccc
Q 033969 1 MASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (107)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~-~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (107)
+|+|||++||++|-.++++|+.+.|.+ +|+++|.++|.||++|+|+||.|..++.||.|||.+||+++|...+|||||+
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 589999999999999999999988764 6899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCC-------------CcCCccCCHhhhh-c
Q 033969 80 SNGSICLDILK-------------EQWSPALTISKVW-S 104 (107)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~i~~il-~ 104 (107)
.+|+||+++|. +.|+|.++++.|| |
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLS 122 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLS 122 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHH
Confidence 99999999983 5699999999987 5
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.3e-35 Score=195.19 Aligned_cols=103 Identities=63% Similarity=1.212 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCC-CCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccCCC
Q 033969 4 KRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (107)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 82 (107)
+||++|++++++.+++++.+.+.++ |+++|+++|.||++|||+||.|++.+.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999888775 999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccCCC-CcCCccCCHhhhh-ccc
Q 033969 83 SICLDILK-EQWSPALTISKVW-SIN 106 (107)
Q Consensus 83 ~icl~~l~-~~W~p~~~i~~il-~i~ 106 (107)
.||+++|. ++|+|++++.+|| +|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~ 106 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQ 106 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHH
Confidence 99999998 8999999999998 764
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-34 Score=183.23 Aligned_cols=104 Identities=39% Similarity=0.833 Sum_probs=98.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccC-cccccc
Q 033969 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNIN 79 (107)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~ 79 (107)
.|++||+||+.+++.+++.|+... +.+|+.+|.+-+.|.+||.|+|..|.++++||+.||++.|+|.|..++ .||+|+
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY 93 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY 93 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence 378999999999999999999887 788999999999999999999999999999999999999999999875 799999
Q ss_pred CCCcEeccCCCCcCCccCCHhhhh-cc
Q 033969 80 SNGSICLDILKEQWSPALTISKVW-SI 105 (107)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il-~i 105 (107)
++|-||+|+|.+.|+|++++.+|. ||
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClSI 120 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLSI 120 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHHH
Confidence 999999999999999999999985 65
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-33 Score=179.56 Aligned_cols=102 Identities=39% Similarity=0.855 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHhhcCCCCCee-EeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCcccccc
Q 033969 1 MASKRILKELKDLQKDPPTSCS-AGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (107)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~-~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (107)
+|.+||+||+.+|+++....+. +...++|+..|++.|. |++.||..|.|+++|.||.+|||.||+|.|.|+|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 5899999999999998776543 4567889999999999 9999999999999999999999999999999999999999
Q ss_pred CCCcEeccCC-CCcCCccCCHhhhh
Q 033969 80 SNGSICLDIL-KEQWSPALTISKVW 103 (107)
Q Consensus 80 ~~G~icl~~l-~~~W~p~~~i~~il 103 (107)
+.|++|+.++ .|+|.|++++++||
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVl 105 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVL 105 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHH
Confidence 9999999998 68999999999987
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.9e-32 Score=185.68 Aligned_cols=102 Identities=35% Similarity=0.784 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccCC
Q 033969 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (107)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (107)
|.|||+|||+.|+++|.+++.+.|.++|+.+||.+|.||++|||+||.|+.++.||++||++||.|+++|+ +..+-.+
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktn 83 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTN 83 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988 5667778
Q ss_pred CcEeccCC---CCcCCccCCHhhhh-cc
Q 033969 82 GSICLDIL---KEQWSPALTISKVW-SI 105 (107)
Q Consensus 82 G~icl~~l---~~~W~p~~~i~~il-~i 105 (107)
-++||++. .+.|+|++++++|| ||
T Consensus 84 tRLCLSiSDfHPdsWNP~WsVStILtGL 111 (244)
T KOG0894|consen 84 TRLCLSISDFHPDSWNPGWSVSTILTGL 111 (244)
T ss_pred ceEEEeccccCcCcCCCcccHHHHHHHH
Confidence 89999887 58899999999999 75
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.9e-32 Score=178.90 Aligned_cols=103 Identities=37% Similarity=0.781 Sum_probs=88.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEe----ecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccc
Q 033969 1 MASKRILKELKDLQKDPPTSCSAG----PVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHP 76 (107)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~----~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hp 76 (107)
+|+.||++|..++. -+++++.. +.+-+..+.+++|. |+++.|+||.|.|.+.+|+.||++||+|+|+|++|||
T Consensus 28 ~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HP 104 (184)
T KOG0420|consen 28 AALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHP 104 (184)
T ss_pred HHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccC
Confidence 36788888888884 44555432 22333335999998 9999999999999999999999999999999999999
Q ss_pred cccCCCcEeccCCCCcCCccCCHhhhh-ccc
Q 033969 77 NINSNGSICLDILKEQWSPALTISKVW-SIN 106 (107)
Q Consensus 77 nv~~~G~icl~~l~~~W~p~~~i~~il-~i~ 106 (107)
||+.+|.||+++|+++|+|+.+|.+|+ +|+
T Consensus 105 NId~~GnVCLnILRedW~P~lnL~sIi~GL~ 135 (184)
T KOG0420|consen 105 NIDLDGNVCLNILREDWRPVLNLNSIIYGLQ 135 (184)
T ss_pred CcCCcchHHHHHHHhcCccccchHHHHHHHH
Confidence 999999999999999999999999998 875
No 18
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-30 Score=171.06 Aligned_cols=100 Identities=35% Similarity=0.810 Sum_probs=92.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccC
Q 033969 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (107)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (107)
++.||+..|+..|... +..+...++++.+++|.+.||.+|||+||.+++++.+|++||++.|.|.|+++||||||++
T Consensus 3 ~~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred CcccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 3568999999998875 4467778889999999999999999999999999999999999999999999999999996
Q ss_pred -CCcEeccCCCCcCCccCCHhhhh
Q 033969 81 -NGSICLDILKEQWSPALTISKVW 103 (107)
Q Consensus 81 -~G~icl~~l~~~W~p~~~i~~il 103 (107)
+|.||+|++++.|+|.+.+..|+
T Consensus 80 ~SGsVCLDViNQtWSp~yDL~NIf 103 (189)
T KOG0416|consen 80 ASGSVCLDVINQTWSPLYDLVNIF 103 (189)
T ss_pred ccCccHHHHHhhhhhHHHHHHHHH
Confidence 89999999999999999998876
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-29 Score=168.16 Aligned_cols=101 Identities=43% Similarity=0.799 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccCCC
Q 033969 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (107)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 82 (107)
.|.|.||++.|...+++|+.|.+.++|+....+.|.||.+|||++|.|++.+.+..|||.+||+-+|+|+||||||-.+|
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccCCCCcCCccCCHhhhh
Q 033969 83 SICLDILKEQWSPALTISKVW 103 (107)
Q Consensus 83 ~icl~~l~~~W~p~~~i~~il 103 (107)
.||++.|..+|+|+++|..||
T Consensus 92 EICVNtLKkDW~p~LGirHvL 112 (223)
T KOG0423|consen 92 EICVNTLKKDWNPSLGIRHVL 112 (223)
T ss_pred eehhhhhhcccCcccchhhHh
Confidence 999999999999999999987
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.1e-25 Score=154.93 Aligned_cols=99 Identities=38% Similarity=0.821 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCccccccCC
Q 033969 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (107)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (107)
|.|||+||.++|+ +|-+.+.+.+.++|+++|+++|.||.+|-|+||+|+.+|.||.|||++||.+..+|+ +..+.-+
T Consensus 12 aVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVN 88 (314)
T ss_pred HHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeC
Confidence 6899999999998 777788899999999999999999999999999999999999999999999999887 5667778
Q ss_pred CcEeccCC---CCcCCccCCHhhhh
Q 033969 82 GSICLDIL---KEQWSPALTISKVW 103 (107)
Q Consensus 82 G~icl~~l---~~~W~p~~~i~~il 103 (107)
-+||+++. .+.|.|+++|...|
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTAL 113 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTAL 113 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHH
Confidence 89999998 48899999999966
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.4e-20 Score=148.40 Aligned_cols=103 Identities=33% Similarity=0.676 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc--CccccccCC
Q 033969 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK--VFHPNINSN 81 (107)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~--i~Hpnv~~~ 81 (107)
+..+.|++-|..+.+.++.|...++.+....+.|.||.+|||..|.|.|.+.||++||.+||.|...+. .++||.|++
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 345567777888889999999999999889999999999999999999999999999999999999875 689999999
Q ss_pred CcEeccCCC-------CcCCccCCHhhhh-ccc
Q 033969 82 GSICLDILK-------EQWSPALTISKVW-SIN 106 (107)
Q Consensus 82 G~icl~~l~-------~~W~p~~~i~~il-~i~ 106 (107)
|+||+++|+ +.|+|+-++.++| |||
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q 966 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQ 966 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhh
Confidence 999999994 6799999999998 987
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.1e-17 Score=134.16 Aligned_cols=104 Identities=41% Similarity=0.757 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc---Ccccccc
Q 033969 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK---VFHPNIN 79 (107)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~---i~Hpnv~ 79 (107)
.+|+++|++-+.++.++++.+.+.+..+...+++|.||.+|||++|.|.|.|.||..||..||+|.+.+. .+.||.+
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999976 6899999
Q ss_pred CCCcEeccCCC-------CcCCcc-CCHhhhh-ccc
Q 033969 80 SNGSICLDILK-------EQWSPA-LTISKVW-SIN 106 (107)
Q Consensus 80 ~~G~icl~~l~-------~~W~p~-~~i~~il-~i~ 106 (107)
.+|+||+++|. +.|+|. .++.++| +||
T Consensus 364 n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ 399 (1101)
T KOG0895|consen 364 NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQ 399 (1101)
T ss_pred cCceEEeeeeeecccccccCCCccccchhhhhhhhh
Confidence 99999999882 779998 9999998 987
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.9e-14 Score=97.05 Aligned_cols=90 Identities=27% Similarity=0.475 Sum_probs=80.3
Q ss_pred HHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCeEEEeccCccccccC-C
Q 033969 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPF--KPPKVAFRTKVFHPNINS-N 81 (107)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~--~pP~v~f~t~i~Hpnv~~-~ 81 (107)
.|+.|+..+.+.+.+|+++.|.-.|-+.|.++|.+ ..+.|+||.|+|+|.+|++||. +-|+|-|.+.++||+|.+ +
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~s 101 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKS 101 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCc
Confidence 47789999999999999999999999999999995 5568999999999999999995 899999999999999995 8
Q ss_pred CcEeccCCCCcCCc
Q 033969 82 GSICLDILKEQWSP 95 (107)
Q Consensus 82 G~icl~~l~~~W~p 95 (107)
+.+|++-....|.-
T Consensus 102 keLdl~raf~eWRk 115 (258)
T KOG0429|consen 102 KELDLNRAFPEWRK 115 (258)
T ss_pred cceeHhhhhhhhhc
Confidence 99999766555754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=5.6e-14 Score=89.98 Aligned_cols=102 Identities=31% Similarity=0.569 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhcCCCC-CeeEeecCC-C--CceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccCcccccc
Q 033969 4 KRILKELKDLQKDPPT-SCSAGPVAE-D--MFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (107)
Q Consensus 4 ~RL~~E~~~l~~~~~~-~~~~~~~~~-n--~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (107)
-||.+|+.+=++--.+ .++.-..++ | +..|..+|.||+.|+||+..|.++|..-++||..||.|+|.+++--.-|.
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn 87 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN 87 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence 5788888877665433 344433333 2 68899999999999999999999999999999999999999999777777
Q ss_pred -CCCcEeccCC--CCcCCccCCHhhhh-cc
Q 033969 80 -SNGSICLDIL--KEQWSPALTISKVW-SI 105 (107)
Q Consensus 80 -~~G~icl~~l--~~~W~p~~~i~~il-~i 105 (107)
++|.|.-..+ -.+|+-+++++.+| ++
T Consensus 88 ~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~l 117 (138)
T KOG0896|consen 88 SSNGVVDPRDITVLARWQRSYSIKMVLGQL 117 (138)
T ss_pred cCCCccCccccchhhcccccchhhHHHHhh
Confidence 4777776443 48899999999998 65
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.1e-09 Score=67.28 Aligned_cols=57 Identities=28% Similarity=0.558 Sum_probs=46.7
Q ss_pred EEEEEEEcCCCCCCCCCeEEEeccC-ccccccCCCcEeccCC-CCcCCccCCHhhhh-cc
Q 033969 49 VFLVSIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDIL-KEQWSPALTISKVW-SI 105 (107)
Q Consensus 49 ~~~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~~~G~icl~~l-~~~W~p~~~i~~il-~i 105 (107)
..-+.+.|+++||+.||.+|...+. --.-|-.+|.||+.+| .+.|+.+++|+.++ ||
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qi 71 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQI 71 (122)
T ss_pred eeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHH
Confidence 4567788999999999999988654 2334557999999999 68899999999976 65
No 26
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.66 E-value=1.5e-08 Score=65.89 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeEEEecc
Q 033969 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVSIHFPPDYPFKPPKVAFRTK 72 (107)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~----------~~~~i~fp~~YP~~pP~v~f~t~ 72 (107)
..||..||+.|.+ +++.+.++-..|.-.=.-++||-|.|.+ |.+++.+|..||..||.|....-
T Consensus 26 ~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 5799999999865 3433444444554434446666666643 56777789999999999987531
Q ss_pred -CccccccCCCcEeccCCC----CcCCccCCHhhhh
Q 033969 73 -VFHPNINSNGSICLDILK----EQWSPALTISKVW 103 (107)
Q Consensus 73 -i~Hpnv~~~G~icl~~l~----~~W~p~~~i~~il 103 (107)
--..-.+.+|+||++.-. ..-.|.++|...|
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 124456789999998752 4457888888866
No 27
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.65 E-value=5.1e-08 Score=63.28 Aligned_cols=58 Identities=31% Similarity=0.831 Sum_probs=52.2
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEeccC---ccccccCCCcEec---cCCCCcCCccCCHhhhh
Q 033969 46 AGGVFLVSIHFPPDYPFKPPKVAFRTKV---FHPNINSNGSICL---DILKEQWSPALTISKVW 103 (107)
Q Consensus 46 ~g~~~~~~i~fp~~YP~~pP~v~f~t~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~il 103 (107)
.|+.+.+.+.+|++||..||.|....+. +-|||+.+|.+|+ ...-+.|.|.-++.++|
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l 97 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCL 97 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHH
Confidence 5799999999999999999999988654 6899999999999 77789999998888877
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.39 E-value=1e-06 Score=56.45 Aligned_cols=69 Identities=28% Similarity=0.606 Sum_probs=45.1
Q ss_pred CceEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCeEEEeccC-----ccccccCCCcEeccCCCCcCCc-cCCHhh
Q 033969 30 MFHWQATIMGPPDSPYAGGVFL--VSIHFPPDYPFKPPKVAFRTKV-----FHPNINSNGSICLDILKEQWSP-ALTISK 101 (107)
Q Consensus 30 ~~~w~~~i~gp~~t~y~g~~~~--~~i~fp~~YP~~pP~v~f~t~i-----~Hpnv~~~G~icl~~l~~~W~p-~~~i~~ 101 (107)
+....++|. -.|+|..|. +.|.+|.+||.+||.+...... -+.+|+.+|+|.+..| ++|++ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 344444443 358888874 6677899999999999875321 1449999999999888 77877 788877
Q ss_pred hh
Q 033969 102 VW 103 (107)
Q Consensus 102 il 103 (107)
++
T Consensus 107 lv 108 (121)
T PF05743_consen 107 LV 108 (121)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=5.6e-06 Score=53.32 Aligned_cols=95 Identities=21% Similarity=0.360 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeEEEecc
Q 033969 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVSIHFPPDYPFKPPKVAFRTK 72 (107)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~----------~~~~i~fp~~YP~~pP~v~f~t~ 72 (107)
.+||..||+.|.+ +++.+.++-..|.-.-..+++|-|-|.+ |.+++.+|-.||-.+|.+....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 5799999999876 3444455555665555568888888754 55666779999999999876321
Q ss_pred C-ccccccCCCcEeccCC-CCcC---CccCCHhhhh
Q 033969 73 V-FHPNINSNGSICLDIL-KEQW---SPALTISKVW 103 (107)
Q Consensus 73 i-~Hpnv~~~G~icl~~l-~~~W---~p~~~i~~il 103 (107)
- -.-..+.+|+||+.-- ..-| .|.++|...+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 0 1223567899999643 3335 5677776654
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=97.48 E-value=0.00052 Score=42.31 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccC
Q 033969 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKV 73 (107)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~g--p~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~i 73 (107)
..+.+.|+..|+.--++.. ......+...+.+.+.. ...+.-....+.+.+.||++||..+|.|...+..
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 3567789988887655444 22334455566666632 2333444568999999999999999999987653
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=97.12 E-value=0.0045 Score=37.76 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=36.2
Q ss_pred HHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCC-CCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 033969 9 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPD-SPYAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (107)
Q Consensus 9 E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~-t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (107)
|+..|+.--++.+.......+.....+.+..... +.-..-.+.+.+.||++||..+|.|.+.+.
T Consensus 1 EieaL~sIy~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 1 ELEALESIYPEDFEVIDEDARIPEITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ChHHHHhhccceeEEecCCCCccEEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEECC
Confidence 3455555444443332222222244444432211 122345689999999999999999998764
No 32
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.0064 Score=45.07 Aligned_cols=69 Identities=25% Similarity=0.576 Sum_probs=49.7
Q ss_pred CceEEEEEeCCCCCCCCCCEEEE--EEEcCCCCCCCCCeEEEecc-----CccccccCCCcEeccCCCCcCCc-cCCHhh
Q 033969 30 MFHWQATIMGPPDSPYAGGVFLV--SIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDILKEQWSP-ALTISK 101 (107)
Q Consensus 30 ~~~w~~~i~gp~~t~y~g~~~~~--~i~fp~~YP~~pP~v~f~t~-----i~Hpnv~~~G~icl~~l~~~W~p-~~~i~~ 101 (107)
++...++| -.+|.|.+|.+ .|-+.+.||..||.+..... -.|-+|+.+|.|.|..| .+|.| +..+..
T Consensus 52 ll~~~GTI----p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~ 126 (365)
T KOG2391|consen 52 LLQLDGTI----PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVG 126 (365)
T ss_pred hhhccCcc----cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHH
Confidence 44444444 35788888764 55579999999999876421 13899999999999999 66765 666655
Q ss_pred hh
Q 033969 102 VW 103 (107)
Q Consensus 102 il 103 (107)
++
T Consensus 127 Li 128 (365)
T KOG2391|consen 127 LI 128 (365)
T ss_pred HH
Confidence 54
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.65 E-value=0.07 Score=35.82 Aligned_cols=56 Identities=32% Similarity=0.513 Sum_probs=43.5
Q ss_pred EEEEEcCCCCCCCCCeEEEeccCc---cccccCC-----CcEeccCC-CCcCCccCCHhhhh-ccc
Q 033969 51 LVSIHFPPDYPFKPPKVAFRTKVF---HPNINSN-----GSICLDIL-KEQWSPALTISKVW-SIN 106 (107)
Q Consensus 51 ~~~i~fp~~YP~~pP~v~f~t~i~---Hpnv~~~-----G~icl~~l-~~~W~p~~~i~~il-~i~ 106 (107)
.+.+.|+.+||..+|.|.+..+.| +||+... ..+|+.-- ...|.++.+++.+| .|.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~ 121 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLF 121 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHH
Confidence 357899999999999888776544 5777755 78999654 46799999999987 553
No 34
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.25 E-value=0.25 Score=31.75 Aligned_cols=52 Identities=25% Similarity=0.393 Sum_probs=39.2
Q ss_pred CeeEeecCCCCceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 033969 20 SCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (107)
Q Consensus 20 ~~~~~~~~~n~~~w~~~i~g--p~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (107)
|+..+...+.-..|.+ |.| -+.+.|....-.+-|.+|+.||..+|...+..+
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P 66 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP 66 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC
Confidence 5556655555566765 555 556679999999999999999999998776644
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.06 E-value=1.5 Score=36.38 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCC-CCCeEEEec
Q 033969 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPF-KPPKVAFRT 71 (107)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~-~pP~v~f~t 71 (107)
-|.+|+..|-. .-..+.++-.+..-+...+.+.+|-...-.....++.|.||.+||. .+|.+.|..
T Consensus 424 nLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 424 NLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred hHHhHHhHhhc-cccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEec
Confidence 35566655532 2223333323334466777887755443233456889999999999 688888874
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=87.84 E-value=1.6 Score=31.94 Aligned_cols=56 Identities=21% Similarity=0.501 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEE
Q 033969 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVA 68 (107)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~ 68 (107)
++|.+|+.++..+.. +.+ ..++++...++.+... .....+++.++.+||.++|.+.
T Consensus 102 s~ll~EIe~IGW~kl--~~i-~~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~ 157 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKL--VQI-QFDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCS 157 (291)
T ss_dssp -CHHHHHHHHHCGCC--EEE-EE-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEEC
T ss_pred HHHHHHHHHhccccc--eEE-ecCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceee
Confidence 567888888865433 222 1377888888888721 2578899999999999999753
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=85.39 E-value=3.1 Score=29.17 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCCCCe-eEeecCCCCceEEEEEeCCCCCCCCC--CEEEEEEEcCCCCCCCCCeEEEe
Q 033969 7 LKELKDLQKDPPTSC-SAGPVAEDMFHWQATIMGPPDSPYAG--GVFLVSIHFPPDYPFKPPKVAFR 70 (107)
Q Consensus 7 ~~E~~~l~~~~~~~~-~~~~~~~n~~~w~~~i~gp~~t~y~g--~~~~~~i~fp~~YP~~pP~v~f~ 70 (107)
..|+..|....+..+ .+ .+.+...+.+.|. ...+-++. +.+.+.+.++.+||..+|-+.+.
T Consensus 8 e~E~EaLeSIY~de~~~i--~~~~~~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 8 EEELEALESIYPDEFKHI--NSEDPPIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHhccchhhhh--hccCCccceeeee-cccccCCCccccEEEEEEccCCCCCCCcceecc
Confidence 456667766544444 23 3344444666776 33322221 27889999999999999999443
No 38
>smart00340 HALZ homeobox associated leucin zipper.
Probab=83.70 E-value=1.1 Score=23.41 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhcC
Q 033969 3 SKRILKELKDLQKD 16 (107)
Q Consensus 3 ~~RL~~E~~~l~~~ 16 (107)
.+||++|+++|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 58999999999764
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=76.46 E-value=5.2 Score=26.12 Aligned_cols=24 Identities=29% Similarity=0.658 Sum_probs=22.2
Q ss_pred CCEEEEEEEcCCCCC-CCCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYP-FKPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP-~~pP~v~f~ 70 (107)
.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 488999999999999 999999986
No 40
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=74.67 E-value=5.9 Score=27.19 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=22.3
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYPFKPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP~~pP~v~f~ 70 (107)
.|.|.|+-.+|--||..+|.|.|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 488999999999999999999986
No 41
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=70.49 E-value=8.7 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.549 Sum_probs=22.0
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYP-----FKPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP-----~~pP~v~f~ 70 (107)
.|.|.|+-.+|--|| ..||.|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 488999999999999 899999986
No 42
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=65.58 E-value=21 Score=26.87 Aligned_cols=25 Identities=28% Similarity=0.584 Sum_probs=21.2
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEecc
Q 033969 48 GVFLVSIHFPPDYPFKPPKVAFRTK 72 (107)
Q Consensus 48 ~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (107)
-.|-+.+.+|..||...|.++|.+-
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEee
Confidence 4577888899999999999999764
No 43
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=62.36 E-value=3.7 Score=27.67 Aligned_cols=13 Identities=46% Similarity=0.710 Sum_probs=11.2
Q ss_pred ccccCCCcEeccC
Q 033969 76 PNINSNGSICLDI 88 (107)
Q Consensus 76 pnv~~~G~icl~~ 88 (107)
+||+.+|+||+..
T Consensus 98 ~NV~~~g~vC~G~ 110 (175)
T PF14460_consen 98 FNVYSNGSVCWGN 110 (175)
T ss_pred cccCCCCcEeeCC
Confidence 4999999999965
No 44
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=61.07 E-value=16 Score=25.26 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.5
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYPF-----KPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP~-----~pP~v~f~ 70 (107)
.|.|.|+-..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4789999999999998 99999885
No 45
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=60.52 E-value=39 Score=23.73 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCC
Q 033969 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDY 60 (107)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~Y 60 (107)
+..||.+.++++++. ..+...-|.+... |...-=-|| |.+.+.|.++=
T Consensus 10 ~~eR~~e~~~~~k~~---------L~~a~~GW~~~yy-p~~~~~~GG-y~f~~kF~~~~ 57 (235)
T PF14135_consen 10 PAERINEALAEYKKI---------LTSAPNGWKLEYY-PKTDQSYGG-YTFLMKFDDDG 57 (235)
T ss_pred HHHHHHHHHHHHHHH---------HhcCCCceEEEEE-CCCCccCCc-EEEEEEECCCC
Confidence 678998877776652 1222334776777 443321233 77777776443
No 46
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=58.43 E-value=19 Score=24.68 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.9
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYPF-----KPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP~-----~pP~v~f~ 70 (107)
.|.|.|.-.+|--||. .||.|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999995 89998875
No 47
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=57.76 E-value=38 Score=20.08 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=26.7
Q ss_pred ceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 033969 31 FHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (107)
Q Consensus 31 ~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (107)
.+|.+.+.|+.+.-...-.=++.+.+.++|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 57999999877765556677788888888886 55555444
No 48
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=57.73 E-value=19 Score=27.02 Aligned_cols=42 Identities=29% Similarity=0.563 Sum_probs=33.4
Q ss_pred CceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec-cCcccc
Q 033969 30 MFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRT-KVFHPN 77 (107)
Q Consensus 30 ~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~t-~i~Hpn 77 (107)
..++.+.| ||.|...+-+|.|...||..||-+.|-. .-|+|-
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 44555555 5899999999999999999999999963 347773
No 49
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=57.53 E-value=5.6 Score=28.24 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=13.4
Q ss_pred cCccc---cccCCCcEeccCC
Q 033969 72 KVFHP---NINSNGSICLDIL 89 (107)
Q Consensus 72 ~i~Hp---nv~~~G~icl~~l 89 (107)
+.||. ||+++|.||+.-.
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~ 152 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNA 152 (228)
T ss_pred eeccCCcCccCCCCeEeeCCC
Confidence 35554 8999999999543
No 50
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.82 E-value=3.1 Score=28.71 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=22.0
Q ss_pred CCcEeccCCCCcCCccCCHhhhhcc
Q 033969 81 NGSICLDILKEQWSPALTISKVWSI 105 (107)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~i 105 (107)
.+..|++++...|+|.+|++..++|
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~l 159 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDL 159 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHH
Confidence 5789999999999999999987754
No 51
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=53.12 E-value=21 Score=26.65 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.0
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEecc
Q 033969 48 GVFLVSIHFPPDYPFKPPKVAFRTK 72 (107)
Q Consensus 48 ~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (107)
-.+.+++..+..||.+.|+|....+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4688999999999999999999754
No 52
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.66 E-value=32 Score=23.74 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCC
Q 033969 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDS 43 (107)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t 43 (107)
.+|+++|++++.+.--..++.-|.-+..-.+.+.+....++
T Consensus 121 ~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~ 161 (203)
T KOG3285|consen 121 LKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT 161 (203)
T ss_pred HHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc
Confidence 68999999999988777777777766667777777654443
No 53
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=50.40 E-value=12 Score=20.93 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhc
Q 033969 3 SKRILKELKDLQK 15 (107)
Q Consensus 3 ~~RL~~E~~~l~~ 15 (107)
.+||+||++++.-
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 3689999998854
No 54
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=49.92 E-value=19 Score=23.41 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCCCceEEEEEeCCCCCCCC-CCEEEEEEEc
Q 033969 27 AEDMFHWQATIMGPPDSPYA-GGVFLVSIHF 56 (107)
Q Consensus 27 ~~n~~~w~~~i~gp~~t~y~-g~~~~~~i~f 56 (107)
.+|...|.|++.|++|++.. ...|-+.+.|
T Consensus 44 PGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCCcceEEEEECCCCcceeccccchheeeH
Confidence 46778899999999998876 3455454444
No 55
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=49.45 E-value=19 Score=29.03 Aligned_cols=29 Identities=34% Similarity=0.827 Sum_probs=23.9
Q ss_pred CCCCCCEEEEEEEcCCCCCC---CCCeEEEecc
Q 033969 43 SPYAGGVFLVSIHFPPDYPF---KPPKVAFRTK 72 (107)
Q Consensus 43 t~y~g~~~~~~i~fp~~YP~---~pP~v~f~t~ 72 (107)
+||.=|.|.+ +.+|++||+ +-|.+.|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4677788877 457999998 8999999987
No 56
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=45.34 E-value=38 Score=24.92 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.0
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (107)
.|.|.|.-.+|--|| ..||.|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 488999999999997 689999986
No 57
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.21 E-value=94 Score=24.26 Aligned_cols=21 Identities=38% Similarity=0.967 Sum_probs=14.9
Q ss_pred EEEEEEcCCCCCC-CCCeEEEe
Q 033969 50 FLVSIHFPPDYPF-KPPKVAFR 70 (107)
Q Consensus 50 ~~~~i~fp~~YP~-~pP~v~f~ 70 (107)
..+.+.+|++||. +||++...
T Consensus 76 ivlkf~LP~~YPs~spP~f~l~ 97 (445)
T KOG1814|consen 76 IVLKFHLPNDYPSVSPPKFELK 97 (445)
T ss_pred eeeeeecCCccccCCCCceeee
Confidence 3467788999998 66665443
No 58
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=44.84 E-value=61 Score=23.50 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=31.6
Q ss_pred CCCceEEEEEeCCCCCC-CCC---CEEEEEEEcC-----CCCCCCCCeEEEeccCccc
Q 033969 28 EDMFHWQATIMGPPDSP-YAG---GVFLVSIHFP-----PDYPFKPPKVAFRTKVFHP 76 (107)
Q Consensus 28 ~n~~~w~~~i~gp~~t~-y~g---~~~~~~i~fp-----~~YP~~pP~v~f~t~i~Hp 76 (107)
.|..-|.+.-.. .+|- -+| ..|+..+.++ -|-||.||+|+.+++-|..
T Consensus 100 KDp~PWkl~YrV-~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 100 KDPIPWKLYYRV-EDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCCeEEEEEe-ecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 355667777763 3333 333 3356666654 7899999999999986644
No 59
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=44.48 E-value=62 Score=24.93 Aligned_cols=72 Identities=13% Similarity=0.249 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEE---------EEEEcCCCCCCCCCeEEEeccCccc
Q 033969 6 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFL---------VSIHFPPDYPFKPPKVAFRTKVFHP 76 (107)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~---------~~i~fp~~YP~~pP~v~f~t~i~Hp 76 (107)
+..|.++|.+..|.+-.+...+. -+..+.|. |.. .|-.+.|+ +. .|...|++.||-+.+...+.|-
T Consensus 250 ne~Ev~Rir~eHPdd~~~vv~~~--~RvkG~L~-vsR-AfGd~~lK~~~~n~e~l~~-~fr~~~~~t~PyltaeP~i~~H 324 (390)
T KOG0700|consen 250 NEDEVRRIRSEHPDDPHIVVNKH--WRVKGILQ-VSR-AFGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLTAEPSITHH 324 (390)
T ss_pred cHHHHHHHHHhCCCCcceEeecc--ceeeEEEE-eee-eccceeecchhhccchhHh-hcCCCCCCCCCceeccceEEEE
Confidence 46788888887665544433332 12233443 332 24444443 12 6888999999999998887766
Q ss_pred cccCCC
Q 033969 77 NINSNG 82 (107)
Q Consensus 77 nv~~~G 82 (107)
.+.++-
T Consensus 325 rL~p~D 330 (390)
T KOG0700|consen 325 KLTPND 330 (390)
T ss_pred EcCCCC
Confidence 666543
No 60
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=43.00 E-value=43 Score=24.49 Aligned_cols=24 Identities=25% Similarity=0.634 Sum_probs=21.2
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (107)
.|.|.|.-..|--|| ..||.|.|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 488999999999999 589999986
No 61
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=42.62 E-value=45 Score=23.52 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=20.9
Q ss_pred CCEEEEEEEcCCCCCC-------CCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYPF-------KPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP~-------~pP~v~f~ 70 (107)
.|.|.|.-..|--||. .||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999975 89999984
No 62
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=42.13 E-value=78 Score=19.12 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=20.1
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 033969 45 YAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (107)
Q Consensus 45 y~g~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (107)
-+|..+.|.-.-|+.|| +|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45677888888889999 588888754
No 63
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=40.33 E-value=51 Score=23.24 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=21.1
Q ss_pred CCEEEEEEEcCCCCCC-------CCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYPF-------KPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP~-------~pP~v~f~ 70 (107)
.|.|.|.-.+|--||. .||.|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999976 89999984
No 64
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=40.14 E-value=51 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.9
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (107)
.|.|.|+-..|--|| ..||.|.|.
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 488999999999997 678999885
No 65
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=39.69 E-value=53 Score=24.09 Aligned_cols=24 Identities=21% Similarity=0.603 Sum_probs=20.6
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (107)
.|.|.|.-.+|..|| ..||.|.|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 488999999998887 589999885
No 66
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=37.58 E-value=69 Score=26.16 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCCCCeeEeec----CCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCC
Q 033969 6 ILKELKDLQKDPPTSCSAGPV----AEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKP 64 (107)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~----~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~p 64 (107)
|++|+..|.. .+.|.++ ++|-....+.|. .+.-| -+++..|.+||...
T Consensus 624 lqgElarLD~----kF~v~ld~~~~~nN~I~liCkld-dk~lP------Pl~lsVP~~YPaq~ 675 (742)
T KOG4274|consen 624 LQGELARLDA----KFEVDLDHQRHDNNHIILICKLD-DKQLP------PLRLSVPTTYPAQN 675 (742)
T ss_pred HHHHHHhhcc----ceeecCCcccccCCeeEEEEEec-CCCCC------Ceeeeccccccccc
Confidence 6778888754 2333332 344334444444 34434 48999999999876
No 67
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=37.16 E-value=64 Score=23.18 Aligned_cols=24 Identities=25% Similarity=0.692 Sum_probs=20.6
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (107)
.|.|.|.-..|.-|| ..||.|.|.
T Consensus 150 ~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 150 DGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 588999999999997 478999885
No 68
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=36.95 E-value=14 Score=23.16 Aligned_cols=22 Identities=32% Similarity=0.677 Sum_probs=17.4
Q ss_pred CCCcEeccCCCCcCCccCCHhh
Q 033969 80 SNGSICLDILKEQWSPALTISK 101 (107)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~ 101 (107)
..|.+|.-.+..+|+|.+++.-
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~V 70 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVKV 70 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEEE
Confidence 3566788888899999988754
No 69
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=36.79 E-value=66 Score=23.41 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=25.9
Q ss_pred CCCCCCEEEEEEEcCCCCCCCC--CeEEEec
Q 033969 43 SPYAGGVFLVSIHFPPDYPFKP--PKVAFRT 71 (107)
Q Consensus 43 t~y~g~~~~~~i~fp~~YP~~p--P~v~f~t 71 (107)
+.+.|..|++.+..|++||-.. |.|.|+.
T Consensus 16 s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 16 SANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred ecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 4677899999999999999988 9999984
No 70
>TIGR01633 phi3626_gp14_N putative phage tail component, N-terminal domain. This model represents the best-conserved region of about 125 amino acids, toward the N-terminus, of a family of proteins from temperate phage of a number of Gram-positive bacteria. These phage proteins range in length from 230 to 525 amino acids.
Probab=35.56 E-value=1e+02 Score=18.70 Aligned_cols=55 Identities=13% Similarity=0.029 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCC--CCCCCEEEEEEEcCCC
Q 033969 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDS--PYAGGVFLVSIHFPPD 59 (107)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t--~y~g~~~~~~i~fp~~ 59 (107)
+++.++++.+.... +...+...++.-..|.+.+.+..+- ....|.+.+++.+|+-
T Consensus 65 ~~~~~~l~~~L~~~-~~~~L~f~dePd~yy~a~~~~~~~~~~~~~~~~~titF~c~dP 121 (124)
T TIGR01633 65 RELFRELAGWLNSQ-EPVPLIFSDEPDKTYYARVDEEIDLDEDTTFGKGTLNFICPDP 121 (124)
T ss_pred HHHHHHHHHHhCCC-CCcceEeccCCCcEEEEEEcCccCHHHhhcccEEEEEEEecCC
Confidence 45666777776543 2345555666566888888763221 1234777887777663
No 71
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=34.79 E-value=23 Score=23.23 Aligned_cols=30 Identities=27% Similarity=0.651 Sum_probs=23.8
Q ss_pred CCCCeEEEe---ccCccccccCCCcEeccCCCC
Q 033969 62 FKPPKVAFR---TKVFHPNINSNGSICLDILKE 91 (107)
Q Consensus 62 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~ 91 (107)
.+||.|-+. ..--|+.+..+|.+|+++|.+
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 589998875 234688899999999999953
No 72
>PF05709 Sipho_tail: Phage tail protein; InterPro: IPR008841 This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 4DIV_X 2X8K_C.
Probab=34.62 E-value=1.5e+02 Score=20.17 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCC---CCCCCCCCEEEEEEEcCCCCCCC
Q 033969 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP---PDSPYAGGVFLVSIHFPPDYPFK 63 (107)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp---~~t~y~g~~~~~~i~fp~~YP~~ 63 (107)
.++.+++.++.... ....+...++.-..|.+.+.+. +.. ...+.+.+++.+|+=|-++
T Consensus 55 ~~~~~~l~~~l~~~-~~~~l~f~d~p~~~y~~~~~~~~~~~~~-~~~~~~ti~f~c~dPy~y~ 115 (249)
T PF05709_consen 55 EQKRRELASWLNPK-EPVKLIFDDDPDKYYYAKVSGSPDPDEG-NNSGTFTITFTCPDPYAYS 115 (249)
T ss_dssp HHHHHHHHHHH--S-S-EEEEETTSTT-EEEEEEEEEEE--SS-SSCEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhCcC-CCEEEEEECCCCEEEEEEECCccccccc-ceeEEEEEEEEECCceeee
Confidence 45667777776433 3477887888788898888763 222 2234666666664444444
No 73
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=33.36 E-value=93 Score=23.40 Aligned_cols=40 Identities=28% Similarity=0.539 Sum_probs=28.1
Q ss_pred ceEEEEEeCCCC-CCCCCCEEEEEEEcC--CCCCCCCCeEEEe
Q 033969 31 FHWQATIMGPPD-SPYAGGVFLVSIHFP--PDYPFKPPKVAFR 70 (107)
Q Consensus 31 ~~w~~~i~gp~~-t~y~g~~~~~~i~fp--~~YP~~pP~v~f~ 70 (107)
..|+..+.|-++ .-|++|.+++++.-. ++-=.+.|+|||-
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG 239 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG 239 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEee
Confidence 458889999444 478899999988742 3333466799984
No 74
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=31.53 E-value=1.5e+02 Score=23.22 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=12.5
Q ss_pred CEEEEEEEcCCCCCC
Q 033969 48 GVFLVSIHFPPDYPF 62 (107)
Q Consensus 48 ~~~~~~i~fp~~YP~ 62 (107)
....+.++||.+|+.
T Consensus 209 e~k~i~vtFP~dy~a 223 (441)
T COG0544 209 EEKDIKVTFPEDYHA 223 (441)
T ss_pred CeeEEEEEcccccch
Confidence 346788999999997
No 75
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=31.20 E-value=26 Score=19.49 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=7.4
Q ss_pred cCCccCCHhhhh
Q 033969 92 QWSPALTISKVW 103 (107)
Q Consensus 92 ~W~p~~~i~~il 103 (107)
+|.|.++|++++
T Consensus 37 gW~p~~~L~~~i 48 (62)
T PF13950_consen 37 GWKPKYSLEDMI 48 (62)
T ss_dssp ----SSSHHHHH
T ss_pred CCCcCCCHHHHH
Confidence 699999999987
No 76
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=30.97 E-value=91 Score=22.57 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=20.3
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (107)
.|.|.|.-..|--|| ..||.|.|.
T Consensus 156 ~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 197 (256)
T cd03458 156 DGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFM 197 (256)
T ss_pred CCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 388999999998886 579999885
No 77
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=29.91 E-value=18 Score=17.57 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=8.9
Q ss_pred CccccccCCCc-EeccC
Q 033969 73 VFHPNINSNGS-ICLDI 88 (107)
Q Consensus 73 i~Hpnv~~~G~-icl~~ 88 (107)
-|||.+..+|+ .|-..
T Consensus 2 ~yHPg~~~~g~W~CC~q 18 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQ 18 (32)
T ss_dssp EE-SS-EETTCESSSS-
T ss_pred CcCCCcccCCcCcCCCC
Confidence 37999997765 55543
No 78
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=29.36 E-value=28 Score=22.87 Aligned_cols=17 Identities=35% Similarity=0.897 Sum_probs=13.2
Q ss_pred EEEEEEcCCCCCCCCCe
Q 033969 50 FLVSIHFPPDYPFKPPK 66 (107)
Q Consensus 50 ~~~~i~fp~~YP~~pP~ 66 (107)
|+-.-.+|.|||+.+|.
T Consensus 104 YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 104 YRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHhcCCCCCCCccchH
Confidence 44556789999998885
No 79
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=29.28 E-value=33 Score=22.50 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=40.6
Q ss_pred HHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEe---ccCccccccCCCcE
Q 033969 8 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFR---TKVFHPNINSNGSI 84 (107)
Q Consensus 8 ~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP~~pP~v~f~---t~i~Hpnv~~~G~i 84 (107)
+++++.+..-+.|+.+....+ .+.+ .| +.+.-=..--.+||.+.+. +..-|+.+..+|.+
T Consensus 4 ~~fr~am~~~~~gV~vVT~~~------------~~~~-~g----~tvss~~svS~~PP~v~v~l~~~s~t~~~i~~s~~F 66 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTDG------------PAGR-AG----FTASAVCSVTDTPPTLLVCLNRSASAYPAFKQNGTL 66 (156)
T ss_pred HHHHHHHhccCCCeEEEEeec------------CCCc-ee----EEEEeEeeccCCCCEEEEEeCCCcchhHHHHhCCeE
Confidence 577888887777877643221 1111 11 1111112245689999875 33458888999999
Q ss_pred eccCCC
Q 033969 85 CLDILK 90 (107)
Q Consensus 85 cl~~l~ 90 (107)
++++|.
T Consensus 67 ~VnvL~ 72 (156)
T TIGR03615 67 CVNTLA 72 (156)
T ss_pred EEEECc
Confidence 999985
No 80
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=28.47 E-value=34 Score=22.95 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=10.7
Q ss_pred cCccccccCCCcEec
Q 033969 72 KVFHPNINSNGSICL 86 (107)
Q Consensus 72 ~i~Hpnv~~~G~icl 86 (107)
++|||+.| .|.+|+
T Consensus 50 PiYhP~~D-cGD~VV 63 (165)
T KOG3203|consen 50 PIYHPSTD-CGDHVV 63 (165)
T ss_pred CccCCccC-CCCEEE
Confidence 68999998 566555
No 81
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=27.97 E-value=46 Score=22.15 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=23.8
Q ss_pred CCCCeEEEec---cCccccccCCCcEeccCCCCc
Q 033969 62 FKPPKVAFRT---KVFHPNINSNGSICLDILKEQ 92 (107)
Q Consensus 62 ~~pP~v~f~t---~i~Hpnv~~~G~icl~~l~~~ 92 (107)
++||.|.+.- +--++++.++|..|++++.++
T Consensus 44 ~~PP~v~v~v~~~~~t~~~i~~~~~F~vNvl~~~ 77 (176)
T COG1853 44 LEPPLVLVCVNKSSDTWPNIEETGEFVVNVLSED 77 (176)
T ss_pred CCCCEEEEEecCCcchhhhhhhcCEEEEEeCCHH
Confidence 3788888752 345889999999999999643
No 82
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=27.78 E-value=1.9e+02 Score=19.34 Aligned_cols=66 Identities=20% Similarity=0.360 Sum_probs=42.2
Q ss_pred HHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEE--EEEEEcCCCCCCCCCeEEEe---ccCccccccC
Q 033969 6 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVF--LVSIHFPPDYPFKPPKVAFR---TKVFHPNINS 80 (107)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~--~~~i~fp~~YP~~pP~v~f~---t~i~Hpnv~~ 80 (107)
+..++++.+..-..|+.+....++ +.+ .|-+- ...+. .+||.|-+. +.--|+-+..
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS------ldPPlvlv~l~~~s~~~~~i~~ 66 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT------DTPPSVMVCINANSAMNPVFQG 66 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE------cCCCEEEEEECCCCchhHHHHh
Confidence 456788888888888877532211 111 12111 12233 479998875 2356888889
Q ss_pred CCcEeccCCC
Q 033969 81 NGSICLDILK 90 (107)
Q Consensus 81 ~G~icl~~l~ 90 (107)
.|.+|+++|.
T Consensus 67 sg~F~VnvL~ 76 (170)
T PRK15486 67 NGKLCINVLN 76 (170)
T ss_pred CCeEEEEECh
Confidence 9999999995
No 83
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=27.42 E-value=1.1e+02 Score=21.96 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=20.5
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEEe
Q 033969 46 AGGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (107)
Q Consensus 46 ~g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (107)
+.|.|.|.-..|--|| ..||.|.|.
T Consensus 150 ~~G~y~F~Ti~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 192 (247)
T cd03462 150 EDGRYEVRTTVPVPYQIPNDGPTGALLEAMGGHSWRPAHVHFK 192 (247)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 3588999999998885 578999886
No 84
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=27.03 E-value=48 Score=22.55 Aligned_cols=24 Identities=25% Similarity=0.681 Sum_probs=15.9
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEe
Q 033969 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (107)
Q Consensus 47 g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (107)
.|.|.|+-..|--|| ..||.|.|.
T Consensus 83 ~G~y~f~Ti~Pg~Y~~~~dG~~g~ll~~~g~~~~Rp~HIH~~ 124 (183)
T PF00775_consen 83 DGRYSFRTIKPGPYPIPDDGPVGFLLRALGRHPWRPAHIHFK 124 (183)
T ss_dssp TSEEEEEEE----EEESTTSHHHHHHHHTTTTEEE-SEEEEE
T ss_pred CCEEEEEeeCCCCCCCCCccHHHHHHhhhccCCCcCCeEEEE
Confidence 488999999999998 578999885
No 85
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=25.73 E-value=1.1e+02 Score=16.79 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=11.9
Q ss_pred EEEEEEEcCCCCCCCCCeEEEe
Q 033969 49 VFLVSIHFPPDYPFKPPKVAFR 70 (107)
Q Consensus 49 ~~~~~i~fp~~YP~~pP~v~f~ 70 (107)
.+...|.|++.|.. ||+|.+.
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~ 22 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVS 22 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEE
Confidence 35678999999985 8888764
No 86
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=24.57 E-value=25 Score=29.55 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCCCCCCeEEEec
Q 033969 50 FLVSIHFPPDYPFKPPKVAFRT 71 (107)
Q Consensus 50 ~~~~i~fp~~YP~~pP~v~f~t 71 (107)
=-+.|.+|.|||..+|.+.+.+
T Consensus 716 PPl~l~vP~~YP~~sp~~~~~~ 737 (799)
T PF09606_consen 716 PPLRLTVPADYPRQSPQCSVDR 737 (799)
T ss_dssp ----------------------
T ss_pred CCeeEeCCCCCCccCCcCcccH
Confidence 4578899999999999987754
No 87
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=23.96 E-value=60 Score=24.64 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeeE
Q 033969 2 ASKRILKELKDLQKDPPTSCSA 23 (107)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~ 23 (107)
.-+||++|++.+....+.+..+
T Consensus 33 sP~~L~~em~~V~~~L~~~~~l 54 (361)
T PF12259_consen 33 SPKQLLDEMKNVSSHLPRDWSL 54 (361)
T ss_pred CHHHHHHHHHHHHhcCCccccc
Confidence 4689999999997776655544
No 88
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=23.87 E-value=1e+02 Score=18.86 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCCCCCCEEEEEEEcCC
Q 033969 32 HWQATIMGPPDSPYAGGVFLVSIHFPP 58 (107)
Q Consensus 32 ~w~~~i~gp~~t~y~g~~~~~~i~fp~ 58 (107)
-.|+.+.|++...=.|..+.+++.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 478889998888888999999999854
No 89
>PRK00907 hypothetical protein; Provisional
Probab=23.75 E-value=32 Score=20.87 Aligned_cols=11 Identities=18% Similarity=0.676 Sum_probs=8.8
Q ss_pred EEEcCCCCCCC
Q 033969 53 SIHFPPDYPFK 63 (107)
Q Consensus 53 ~i~fp~~YP~~ 63 (107)
.|+||-+||++
T Consensus 11 liEFPc~fpiK 21 (92)
T PRK00907 11 GFQFPGTFELS 21 (92)
T ss_pred cEecCCCCeEE
Confidence 47899999974
No 90
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=22.42 E-value=99 Score=19.19 Aligned_cols=20 Identities=35% Similarity=0.778 Sum_probs=15.7
Q ss_pred ceEEEEEeCCCCCCCCCCEEEE
Q 033969 31 FHWQATIMGPPDSPYAGGVFLV 52 (107)
Q Consensus 31 ~~w~~~i~gp~~t~y~g~~~~~ 52 (107)
.+|.+.+.|-+ .|+|..|+|
T Consensus 1 ~kWkC~iCg~~--I~~gqlFTF 20 (101)
T PF09943_consen 1 KKWKCYICGKP--IYEGQLFTF 20 (101)
T ss_pred CceEEEecCCe--eeecceEEE
Confidence 36999998744 788988876
No 91
>PF07809 RTP801_C: RTP801 C-terminal region; InterPro: IPR012918 The members of this family are sequences similar to the C-terminal region of RTP801, the protein product of a hypoxia-inducible factor 1 (HIF-1)- responsive gene []. Two members of this family expressed by Drosophila melanogaster, Scylla (Q9NHN4 from SWISSPROT) and Charybde (Q9NHN5 from SWISSPROT), are designated as Hox targets []. RTP801 is thought to be involved in various cellular processes []. Over expression of the gene caused the apoptosis-resistant phenotype in cycling cells, and apoptosis sensitivity in growth arrested cells []. Moreover, the protein product of the mouse homologue of RTP801 (dig2 (Q9D3F7 from SWISSPROT)) is thought to be induced by diverse apoptotic signals, and also by dexamethasone treatment []. ; GO: 0009968 negative regulation of signal transduction, 0005737 cytoplasm; PDB: 3LQ9_A.
Probab=22.27 E-value=2.2e+02 Score=18.11 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcCCCCCe-----eEeecCC-CCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCC
Q 033969 3 SKRILKELKDLQKDPPTSC-----SAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61 (107)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~-----~~~~~~~-n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP 61 (107)
+.|+.+|+-.+-...|+|+ ++....+ +...=...|.-. |.---+|.+.+.|-.|-.
T Consensus 21 ~~~Ia~dvL~ls~~EPCGlRGc~i~v~~E~~~~~~~~l~~i~~D---p~~vpTFEL~Lvlr~d~~ 82 (116)
T PF07809_consen 21 TRRIARDVLRLSESEPCGLRGCLIDVCFEDEPDNCRRLGQIKVD---PSTVPTFELTLVLRQDSS 82 (116)
T ss_dssp HHHHHHHHHHHHTTSTTGGGGEEEEEEEEET-TEEEEEEEEES----TTS---EEEEEEEE--TT
T ss_pred HHHHHHHHHHhhcCCCCcceeeEEEEEEccccchheeeccEecC---CCCCCcEEEEEEEeeCCC
Confidence 5799999999998888763 3444443 333333555533 333468899988876655
No 92
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=21.99 E-value=2.1e+02 Score=20.43 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=22.2
Q ss_pred HHHHHHHHhhcCCC-CCeeEeecCC---CCceEEEEEeCCC
Q 033969 5 RILKELKDLQKDPP-TSCSAGPVAE---DMFHWQATIMGPP 41 (107)
Q Consensus 5 RL~~E~~~l~~~~~-~~~~~~~~~~---n~~~w~~~i~gp~ 41 (107)
-|.||.+++....- .|+.+..... .+..=|....|..
T Consensus 9 ~l~~e~k~~~~~~~~~G~r~~~~k~ls~~f~~shs~~lg~~ 49 (279)
T cd07305 9 ELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSS 49 (279)
T ss_pred HHHHHHHHhcCccccccEEEEEccccCcCeeEEEEEEECCC
Confidence 46788888876544 4888876653 2333344455544
No 93
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.66 E-value=2.2e+02 Score=20.11 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecCCCCceEEEEEeCCCCCCCCCCEEEEEEEcCCCCC
Q 033969 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYP 61 (107)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~~~i~fp~~YP 61 (107)
+|+|||..|+- .++..+.|.+-+...-. .-..|.+++|.......-+.+-.+-+
T Consensus 108 AAqRkL~~ELG------Ip~e~v~pee~~~ltri-hYkA~sdg~wGEhEiDYiL~~~~~~~ 161 (225)
T KOG0142|consen 108 AAQRKLKAELG------IPLEEVPPEEFNFLTRI-HYKAPSDGIWGEHEIDYILFLVKDVT 161 (225)
T ss_pred HHHHHHHHhhC------CCccccCHHHcccceee-eeecCCCCCcccceeeEEEEEeccCC
Confidence 36777777751 11222222232322222 22347888887655544444444443
No 94
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=21.45 E-value=49 Score=21.70 Aligned_cols=13 Identities=62% Similarity=1.571 Sum_probs=8.1
Q ss_pred cCCCCCC----CCCeEE
Q 033969 56 FPPDYPF----KPPKVA 68 (107)
Q Consensus 56 fp~~YP~----~pP~v~ 68 (107)
+|.+||. +||.|+
T Consensus 69 LP~E~PL~pGEk~P~iR 85 (138)
T PF11819_consen 69 LPPEYPLEPGEKPPKIR 85 (138)
T ss_pred CCCccCCCCCCCCCccc
Confidence 4666665 567665
No 95
>PRK11700 hypothetical protein; Provisional
Probab=21.30 E-value=2.9e+02 Score=19.11 Aligned_cols=72 Identities=21% Similarity=0.452 Sum_probs=45.1
Q ss_pred CCceEEEEE---eCCCCCCC-CCCEEEEEEEcC--------------CCCCCCCCeEEEec--------cCcccccc-CC
Q 033969 29 DMFHWQATI---MGPPDSPY-AGGVFLVSIHFP--------------PDYPFKPPKVAFRT--------KVFHPNIN-SN 81 (107)
Q Consensus 29 n~~~w~~~i---~gp~~t~y-~g~~~~~~i~fp--------------~~YP~~pP~v~f~t--------~i~Hpnv~-~~ 81 (107)
.+..|.+-. .=|.+.-| ..|.=++++.+| ++.+..++-|++.. +.-+|-|- .+
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 455565444 33544434 367888999988 34555666555543 24566665 58
Q ss_pred CcEeccCCCCcCCccCCHhhhh-ccc
Q 033969 82 GSICLDILKEQWSPALTISKVW-SIN 106 (107)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il-~i~ 106 (107)
|.+|+.+- -++|++|+ |-+
T Consensus 167 ~~vcIK~H------P~slk~IV~SE~ 186 (187)
T PRK11700 167 GGICIKFH------PHSIKEIVASEQ 186 (187)
T ss_pred CCEEEEEc------CccHHHHHHhhc
Confidence 99999865 36788877 644
No 96
>PRK14052 effector protein; Provisional
Probab=20.81 E-value=36 Score=25.72 Aligned_cols=32 Identities=19% Similarity=0.466 Sum_probs=22.2
Q ss_pred ccccccCCCcEec------cCCCCcCCc-cCCHhhhh-cc
Q 033969 74 FHPNINSNGSICL------DILKEQWSP-ALTISKVW-SI 105 (107)
Q Consensus 74 ~Hpnv~~~G~icl------~~l~~~W~p-~~~i~~il-~i 105 (107)
.||.+|.||++-- ++-++.|+| +.+-+..| +|
T Consensus 347 IHPFlDGNGRtGRLLInLi~lrn~~~~pl~~~~e~~l~gi 386 (387)
T PRK14052 347 YHGFTDGNGRMGRMLYAIAELRNDSFNPLAMNAENSLHGI 386 (387)
T ss_pred ecCCCCCCcHHHHHHHHHHHHhcCCcCccccchhhhhccC
Confidence 6999999987542 223688999 55656666 55
No 97
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=20.78 E-value=59 Score=14.89 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=9.4
Q ss_pred CCCCCCCeEEEe
Q 033969 59 DYPFKPPKVAFR 70 (107)
Q Consensus 59 ~YP~~pP~v~f~ 70 (107)
.||.-++.|++.
T Consensus 9 ~yp~GA~sVrCa 20 (25)
T PF06943_consen 9 MYPRGAPSVRCA 20 (25)
T ss_pred EcCCCCCCeECC
Confidence 488888888864
No 98
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=20.53 E-value=1.2e+02 Score=16.22 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHhhcCCC
Q 033969 2 ASKRILKELKDLQKDPP 18 (107)
Q Consensus 2 a~~RL~~E~~~l~~~~~ 18 (107)
+..|+..|+..+...+.
T Consensus 23 s~ERi~~El~kil~~~~ 39 (64)
T PF12627_consen 23 SKERIREELEKILSSPN 39 (64)
T ss_dssp -HHHHHHHHHHHHTSTT
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 56799999999877653
No 99
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=20.03 E-value=31 Score=25.97 Aligned_cols=16 Identities=38% Similarity=0.862 Sum_probs=13.9
Q ss_pred CEEEEEEEcCCCCCCC
Q 033969 48 GVFLVSIHFPPDYPFK 63 (107)
Q Consensus 48 ~~~~~~i~fp~~YP~~ 63 (107)
..|...+.||+.||++
T Consensus 309 kl~E~~i~FpPsypys 324 (391)
T KOG1976|consen 309 KLKEETIFFPPSYPYS 324 (391)
T ss_pred HHhheeecCCCCCCCC
Confidence 4688999999999985
Done!