Your job contains 1 sequence.
>033970
MKKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKS
RPISKTKSFIAVAMPPRNASKKAAGESSNAGNNELGIPLESEQQLEA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033970
(107 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2017849 - symbol:RPS17 "ribosomal protein S17"... 298 1.9e-26 1
TIGR_CMR|SO_0240 - symbol:SO_0240 "ribosomal protein S17"... 128 2.0e-08 1
TIGR_CMR|CHY_2300 - symbol:CHY_2300 "ribosomal protein S1... 127 2.6e-08 1
UNIPROTKB|P0AG63 - symbol:rpsQ species:83333 "Escherichia... 126 3.3e-08 1
UNIPROTKB|Q9KNZ3 - symbol:rpsQ "30S ribosomal protein S17... 125 4.2e-08 1
TIGR_CMR|VC_2587 - symbol:VC_2587 "ribosomal protein S17"... 125 4.2e-08 1
TIGR_CMR|CBU_0247 - symbol:CBU_0247 "ribosomal protein S1... 124 5.3e-08 1
TIGR_CMR|BA_0119 - symbol:BA_0119 "ribosomal protein S17"... 114 6.1e-07 1
TIGR_CMR|ECH_0418 - symbol:ECH_0418 "ribosomal protein S1... 110 1.6e-06 1
TAIR|locus:2010227 - symbol:emb1129 "embryo defective 112... 106 4.3e-06 1
TIGR_CMR|GSU_2848 - symbol:GSU_2848 "ribosomal protein S1... 105 5.5e-06 1
TIGR_CMR|CJE_1866 - symbol:CJE_1866 "ribosomal protein S1... 103 9.0e-06 1
TIGR_CMR|SPO_0494 - symbol:SPO_0494 "ribosomal protein S1... 102 1.1e-05 1
TIGR_CMR|CPS_0864 - symbol:CPS_0864 "ribosomal protein S1... 101 1.5e-05 1
TAIR|locus:2087896 - symbol:AT3G18880 species:3702 "Arabi... 97 3.9e-05 1
TIGR_CMR|DET_0483 - symbol:DET_0483 "ribosomal protein S1... 96 5.0e-05 1
TIGR_CMR|NSE_0275 - symbol:NSE_0275 "ribosomal protein S1... 95 6.3e-05 1
TIGR_CMR|APH_0289 - symbol:APH_0289 "ribosomal protein S1... 93 0.00010 1
UNIPROTKB|P95058 - symbol:rpsQ "30S ribosomal protein S17... 88 0.00035 1
>TAIR|locus:2017849 [details] [associations]
symbol:RPS17 "ribosomal protein S17" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0006412 "translation"
evidence=ISS;TAS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0032544 "plastid translation"
evidence=IMP] [GO:0000312 "plastid small ribosomal subunit"
evidence=ISS] InterPro:IPR000266 InterPro:IPR019979
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009570 GO:GO:0009941 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0009534 GO:GO:0019843
EMBL:AC011717 GO:GO:0032544 EMBL:J05215 EMBL:Z11151 EMBL:AF386974
EMBL:AY072539 IPI:IPI00548733 PIR:S20942 RefSeq:NP_178103.1
UniGene:At.22304 UniGene:At.69451 ProteinModelPortal:P16180
SMR:P16180 STRING:P16180 PaxDb:P16180 PRIDE:P16180
EnsemblPlants:AT1G79850.1 GeneID:844324 KEGG:ath:AT1G79850
GeneFarm:46 TAIR:At1g79850 eggNOG:COG0186 HOGENOM:HOG000231340
InParanoid:P16180 KO:K02961 OMA:PKYKRRV PhylomeDB:P16180
ProtClustDB:CLSN2681865 Genevestigator:P16180 GermOnline:AT1G79850
GO:GO:0000312 PANTHER:PTHR10744 Uniprot:P16180
Length = 149
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 64/103 (62%), Positives = 75/103 (72%)
Query: 1 MKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKS 60
MK MQGRVVCA+SDKTVAVEVVRL PHP QAHDP+NQF+VGD+V+LEKS
Sbjct: 50 MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109
Query: 61 RPISKTKSFIAVAMPPRNASKKAAGESSNAGNNELGIPLESEQ 103
RPISKTKSF+A+ + R A K AG G+ LG+PLES+Q
Sbjct: 110 RPISKTKSFVALPVIARAARKAEAG-----GDELLGLPLESQQ 147
>TIGR_CMR|SO_0240 [details] [associations]
symbol:SO_0240 "ribosomal protein S17" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000266 InterPro:IPR019979 InterPro:IPR019984
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
GO:GO:0006412 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744
HOGENOM:HOG000231339 ProtClustDB:PRK05610 HAMAP:MF_01345_B
TIGRFAMs:TIGR03635 OMA:TIRECRP RefSeq:NP_715880.1
ProteinModelPortal:Q8EK60 SMR:Q8EK60 GeneID:1168123
KEGG:son:SO_0240 PATRIC:23520173 Uniprot:Q8EK60
Length = 82
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 27/72 (37%), Positives = 37/72 (51%)
Query: 1 MKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKS 60
++ +QGRV DKT+ V + R HP AHD NQ GD+V + +
Sbjct: 5 IRTLQGRVTSNKMDKTITVAIERQVKHPIYGKYIKRTTKIHAHDEANQCNEGDVVAIREC 64
Query: 61 RPISKTKSFIAV 72
RP+SKTKS+ V
Sbjct: 65 RPLSKTKSWTLV 76
>TIGR_CMR|CHY_2300 [details] [associations]
symbol:CHY_2300 "ribosomal protein S17" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR000266 InterPro:IPR019979
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186
KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
OMA:TIRECRP RefSeq:YP_361109.1 ProteinModelPortal:Q3A9S5 SMR:Q3A9S5
STRING:Q3A9S5 GeneID:3728245 KEGG:chy:CHY_2300 PATRIC:21277671
BioCyc:CHYD246194:GJCN-2299-MONOMER Uniprot:Q3A9S5
Length = 98
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 34/92 (36%), Positives = 45/92 (48%)
Query: 2 KKMQ----GRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQL 57
KK+Q GRVV DKTV V V L HP +AHD N + GD+V++
Sbjct: 4 KKVQKIKIGRVVSDKMDKTVVVAVEELVSHPLYKKTIRRTKKFKAHDEHNACRTGDIVKI 63
Query: 58 EKSRPISKTKSFIAVAMPPRNASKKAAGESSN 89
++RP+SK K + V + R K GE N
Sbjct: 64 AETRPLSKEKRWRVVEIIERG---KVLGEEEN 92
>UNIPROTKB|P0AG63 [details] [associations]
symbol:rpsQ species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0019843 "rRNA binding" evidence=IDA] [GO:0070181 "SSU rRNA
binding" evidence=IDA] [GO:0046677 "response to antibiotic"
evidence=IEA;IMP] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR000266 InterPro:IPR019979 InterPro:IPR019984
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
EMBL:X01563 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0046677 EMBL:U18997
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
PDB:3J00 PDBsum:3J00 GO:GO:0070181 PDB:3FIH PDB:3IZV PDB:3IZW
PDBsum:3FIH PDBsum:3IZV PDBsum:3IZW GO:GO:0022627 PDB:3SFS PDB:3UOQ
PDBsum:3SFS PDBsum:3UOQ PDB:1EG0 PDBsum:1EG0 EMBL:V00357
EMBL:X02613 eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744 PDB:4GAS
PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87
PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P
PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF
PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2WWL
PDB:2YKR PDB:2Z4K PDB:2Z4M PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O
PDB:3I1Q PDB:3I1S PDB:3I1Z PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X
PDB:3J0Z PDB:3J10 PDB:3J13 PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR
PDB:3OFA PDB:3OFB PDB:3OFO PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9
PDB:3ORA PDB:4A2I PDB:4ADV PDB:4GAQ PDB:4GD2 PDBsum:1M5G
PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5 PDBsum:1VS7 PDBsum:2AVY
PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB PDBsum:2I2P PDBsum:2I2U
PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9 PDBsum:2QBB PDBsum:2QBD
PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ PDBsum:2QOU PDBsum:2QOW
PDBsum:2QOY PDBsum:2QP0 PDBsum:2WWL PDBsum:2YKR PDBsum:2Z4K
PDBsum:2Z4M PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O
PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U
PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13
PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA
PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY
PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ
PDBsum:4GD2 HOGENOM:HOG000231339 ProtClustDB:PRK05610
HAMAP:MF_01345_B TIGRFAMs:TIGR03635 OMA:TIRECRP PIR:A37519
RefSeq:NP_417770.1 RefSeq:YP_492121.1 ProteinModelPortal:P0AG63
SMR:P0AG63 DIP:DIP-47952N IntAct:P0AG63 PRIDE:P0AG63
EnsemblBacteria:EBESCT00000002794 EnsemblBacteria:EBESCT00000018159
GeneID:12934391 GeneID:947808 KEGG:ecj:Y75_p3865 KEGG:eco:b3311
PATRIC:32122054 EchoBASE:EB0909 EcoGene:EG10916
BioCyc:EcoCyc:EG10916-MONOMER BioCyc:ECOL316407:JW3273-MONOMER
EvolutionaryTrace:P0AG63 Genevestigator:P0AG63 Uniprot:P0AG63
Length = 84
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 1 MKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKS 60
++ +QGRVV +K++ V + R HP HD N+ +GD+V++ +
Sbjct: 5 IRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIREC 64
Query: 61 RPISKTKSFIAV 72
RP+SKTKS+ V
Sbjct: 65 RPLSKTKSWTLV 76
>UNIPROTKB|Q9KNZ3 [details] [associations]
symbol:rpsQ "30S ribosomal protein S17" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000266 InterPro:IPR019979
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744 ProtClustDB:PRK05610
HAMAP:MF_01345_B TIGRFAMs:TIGR03635 PIR:E82058 RefSeq:NP_232215.1
ProteinModelPortal:Q9KNZ3 SMR:Q9KNZ3 PRIDE:Q9KNZ3 DNASU:2615604
GeneID:2615604 KEGG:vch:VC2587 PATRIC:20084200 OMA:KLKTWKV
Uniprot:Q9KNZ3
Length = 84
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 6 GRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISK 65
GRVV DK++ V + R+ HP AHD N+ +GD V++ + RP+SK
Sbjct: 10 GRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTVEIRECRPLSK 69
Query: 66 TKSFIAV 72
TKS+ V
Sbjct: 70 TKSWTLV 76
>TIGR_CMR|VC_2587 [details] [associations]
symbol:VC_2587 "ribosomal protein S17" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000266 InterPro:IPR019979 InterPro:IPR019984
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635 PIR:E82058
RefSeq:NP_232215.1 ProteinModelPortal:Q9KNZ3 SMR:Q9KNZ3
PRIDE:Q9KNZ3 DNASU:2615604 GeneID:2615604 KEGG:vch:VC2587
PATRIC:20084200 OMA:KLKTWKV Uniprot:Q9KNZ3
Length = 84
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 6 GRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISK 65
GRVV DK++ V + R+ HP AHD N+ +GD V++ + RP+SK
Sbjct: 10 GRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTVEIRECRPLSK 69
Query: 66 TKSFIAV 72
TKS+ V
Sbjct: 70 TKSWTLV 76
>TIGR_CMR|CBU_0247 [details] [associations]
symbol:CBU_0247 "ribosomal protein S17" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000266 InterPro:IPR019979
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186
KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
OMA:TIRECRP RefSeq:NP_819291.2 ProteinModelPortal:Q83ER7 SMR:Q83ER7
GeneID:1208128 KEGG:cbu:CBU_0247 PATRIC:17929187
BioCyc:CBUR227377:GJ7S-253-MONOMER Uniprot:Q83ER7
Length = 89
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 1 MKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKS 60
++ + G VV + TV V V R HP AHD N+ Q+GD+V + +
Sbjct: 8 VRSLMGTVVSNKMNDTVVVRVERRVKHPKYGKFIKRSTKIHAHDKGNEGQIGDIVTIREC 67
Query: 61 RPISKTKSFIAVAMPPR 77
RPISKTKS+ V + R
Sbjct: 68 RPISKTKSWTLVKINER 84
>TIGR_CMR|BA_0119 [details] [associations]
symbol:BA_0119 "ribosomal protein S17" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000266 InterPro:IPR019979 InterPro:IPR019984
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186 KO:K02961
PANTHER:PTHR10744 HOGENOM:HOG000231339 ProtClustDB:PRK05610
HAMAP:MF_01345_B TIGRFAMs:TIGR03635 RefSeq:NP_842687.1
RefSeq:YP_016724.1 RefSeq:YP_026405.1 ProteinModelPortal:Q81VS1
SMR:Q81VS1 DNASU:1084742 EnsemblBacteria:EBBACT00000009290
EnsemblBacteria:EBBACT00000016771 EnsemblBacteria:EBBACT00000021172
GeneID:1084742 GeneID:2818179 GeneID:2853163 KEGG:ban:BA_0119
KEGG:bar:GBAA_0119 KEGG:bat:BAS0119 OMA:TIRECRP
BioCyc:BANT260799:GJAJ-130-MONOMER
BioCyc:BANT261594:GJ7F-132-MONOMER Uniprot:Q81VS1
Length = 87
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSR 61
K GRVV DKT+ V V H +AHD +NQ ++GD+V++ ++R
Sbjct: 8 KVYTGRVVSDKMDKTITVLVETYKTHSLYGKRVKYSKKYKAHDEQNQAKLGDIVKIMETR 67
Query: 62 PISKTKSF 69
P+S TK F
Sbjct: 68 PLSATKRF 75
>TIGR_CMR|ECH_0418 [details] [associations]
symbol:ECH_0418 "ribosomal protein S17" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000266
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186
KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
RefSeq:YP_507236.1 ProteinModelPortal:Q2GH47 STRING:Q2GH47
GeneID:3928046 KEGG:ech:ECH_0418 PATRIC:20576313
BioCyc:ECHA205920:GJNR-419-MONOMER Uniprot:Q2GH47
Length = 83
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSR 61
K + G VV A DKT+ V V R+ H HD NQ++ GD+V++++
Sbjct: 13 KVLTGIVVDAKCDKTIKVMVSRMIMHKTYKKIVKKRKNYVVHDEHNQYKCGDVVKIQEHI 72
Query: 62 PISKTKSFIAV 72
PIS TK +I +
Sbjct: 73 PISATKRWIVI 83
>TAIR|locus:2010227 [details] [associations]
symbol:emb1129 "embryo defective 1129" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=ISS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR000266
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC007504 eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744
HOGENOM:HOG000231339 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
OMA:CRLVEIV HSSP:P23828 ProtClustDB:CLSN2682485 EMBL:BT005147
EMBL:AK118089 IPI:IPI00536541 PIR:D96530 RefSeq:NP_175365.1
UniGene:At.38232 ProteinModelPortal:Q9XIA6 SMR:Q9XIA6 STRING:Q9XIA6
PaxDb:Q9XIA6 PRIDE:Q9XIA6 EnsemblPlants:AT1G49400.1 GeneID:841363
KEGG:ath:AT1G49400 TAIR:At1g49400 InParanoid:Q9XIA6
PhylomeDB:Q9XIA6 ArrayExpress:Q9XIA6 Genevestigator:Q9XIA6
Uniprot:Q9XIA6
Length = 116
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 1 MKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKS 60
MK + G VV K+V V V RL + AHD ++ +GD V+L+ S
Sbjct: 1 MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60
Query: 61 RPISKTKSFIA--VAMPPRNASKKAAGESSNA 90
RP+SK K +I + R S KAA + +A
Sbjct: 61 RPLSKNKHWIVAEIIKKARIYSPKAAAAAVSA 92
>TIGR_CMR|GSU_2848 [details] [associations]
symbol:GSU_2848 "ribosomal protein S17" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000266
InterPro:IPR019979 InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
OMA:TIRECRP RefSeq:NP_953891.1 ProteinModelPortal:Q748Z7
GeneID:2688722 KEGG:gsu:GSU2848 PATRIC:22028543
BioCyc:GSUL243231:GH27-2814-MONOMER Uniprot:Q748Z7
Length = 85
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 25/66 (37%), Positives = 32/66 (48%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSR 61
K G VV DKTV V V L HP +AHD +N + GD V + ++R
Sbjct: 8 KTQVGVVVSDKMDKTVVVRVSHLVKHPVYNKYIKRSVKYKAHDTDNSCKTGDRVLIVETR 67
Query: 62 PISKTK 67
P+SK K
Sbjct: 68 PLSKDK 73
>TIGR_CMR|CJE_1866 [details] [associations]
symbol:CJE_1866 "ribosomal protein S17" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000266
InterPro:IPR019979 InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
RefSeq:YP_179836.1 ProteinModelPortal:Q5HS99 STRING:Q5HS99
GeneID:3232493 KEGG:cjr:CJE1866 PATRIC:20045564 OMA:WIVVKDS
BioCyc:CJEJ195099:GJC0-1905-MONOMER Uniprot:Q5HS99
Length = 83
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSR 61
+++QG VV + +KT +V V R HP HD N+ +VGD V + R
Sbjct: 5 REIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYLIHDERNEVKVGDTVVAVECR 64
Query: 62 PISKTKSF 69
P+SK KSF
Sbjct: 65 PLSKRKSF 72
>TIGR_CMR|SPO_0494 [details] [associations]
symbol:SPO_0494 "ribosomal protein S17" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000266
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186
KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
OMA:WIVVKDS RefSeq:YP_165756.1 ProteinModelPortal:Q5LW49 SMR:Q5LW49
GeneID:3194784 KEGG:sil:SPO0494 PATRIC:23374249 Uniprot:Q5LW49
Length = 76
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPI 63
+QG V ++ +TV V V R HP +AHD +N F+VGD V++ + P
Sbjct: 6 LQGTVTSDANAQTVTVLVERRFTHPVLKKTIRKSKKYRAHDEKNAFKVGDTVRIIECAPK 65
Query: 64 SKTK 67
SKTK
Sbjct: 66 SKTK 69
>TIGR_CMR|CPS_0864 [details] [associations]
symbol:CPS_0864 "ribosomal protein S17" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000266
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186
KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339 HAMAP:MF_01345_B
TIGRFAMs:TIGR03635 OMA:TIRECRP RefSeq:YP_267613.1
ProteinModelPortal:Q488A2 SMR:Q488A2 STRING:Q488A2 GeneID:3522447
KEGG:cps:CPS_0864 PATRIC:21465021
BioCyc:CPSY167879:GI48-950-MONOMER Uniprot:Q488A2
Length = 83
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 1 MKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKS 60
++ +QG VV DK++ V + R HP +AHD N GDLV + +
Sbjct: 6 IRTLQGVVVSNKMDKSIVVLIERRVKHPMYGKYMTRSTKLKAHDETNVCNEGDLVTITEV 65
Query: 61 RPISKTKSF 69
PISK+K++
Sbjct: 66 APISKSKNW 74
>TAIR|locus:2087896 [details] [associations]
symbol:AT3G18880 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA]
InterPro:IPR000266 InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AP002039 eggNOG:COG0186
KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339 HAMAP:MF_01345_B
TIGRFAMs:TIGR03635 HSSP:P23828 EMBL:BT004700 EMBL:AK118396
IPI:IPI00537458 RefSeq:NP_188518.1 UniGene:At.38481
ProteinModelPortal:Q9LHN1 SMR:Q9LHN1 STRING:Q9LHN1 PaxDb:Q9LHN1
EnsemblPlants:AT3G18880.1 GeneID:821421 KEGG:ath:AT3G18880
TAIR:At3g18880 InParanoid:Q9LHN1 OMA:ITETRPM PhylomeDB:Q9LHN1
ProtClustDB:CLSN2682485 Genevestigator:Q9LHN1 Uniprot:Q9LHN1
Length = 105
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 29/95 (30%), Positives = 44/95 (46%)
Query: 1 MKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKS 60
MK + G VV +V V V RL + AHD ++ +GD V+L+ S
Sbjct: 1 MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60
Query: 61 RPISKTKSFIA--VAMPPRNASKKAAGESSNAGNN 93
RP+SK K +I + R S +AA + N+ +
Sbjct: 61 RPLSKHKHWIVSEIIKKARIYSPQAAAAALNSSTS 95
>TIGR_CMR|DET_0483 [details] [associations]
symbol:DET_0483 "ribosomal protein S17" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000266 InterPro:IPR019979 InterPro:IPR019984
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186 KO:K02961
PANTHER:PTHR10744 HOGENOM:HOG000231339 ProtClustDB:PRK05610
HAMAP:MF_01345_B TIGRFAMs:TIGR03635 RefSeq:YP_181227.1
ProteinModelPortal:Q3Z972 STRING:Q3Z972 GeneID:3230138
KEGG:det:DET0483 PATRIC:21608035 OMA:CRLVEIV
BioCyc:DETH243164:GJNF-483-MONOMER Uniprot:Q3Z972
Length = 86
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 6 GRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISK 65
G V+ +KT+ V + HP HD +N+ ++GD++++ K RPISK
Sbjct: 9 GHVISDRMEKTIVVGIDVAKRHPLYKKTYRRTMKYLVHDEKNEAKIGDMIEIVKCRPISK 68
Query: 66 TK 67
K
Sbjct: 69 GK 70
>TIGR_CMR|NSE_0275 [details] [associations]
symbol:NSE_0275 "ribosomal protein S17" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000266
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR KO:K02961 PANTHER:PTHR10744
eggNOG:NOG138354 HOGENOM:HOG000231339 OMA:VVKIREH
TIGRFAMs:TIGR03635 RefSeq:YP_506166.1 ProteinModelPortal:Q2GED0
STRING:Q2GED0 GeneID:3931641 KEGG:nse:NSE_0275 PATRIC:22680643
ProtClustDB:CLSK2528126 BioCyc:NSEN222891:GHFU-302-MONOMER
Uniprot:Q2GED0
Length = 74
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPI 63
++G V S KTV V V R HP AHD N + G +V+++ RPI
Sbjct: 6 LEGVAVRDSLSKTVKVRVTRKVSHPKYKKVLHLTKSYLAHDEANVVRAGQVVRIQAVRPI 65
Query: 64 SKTKSFIAV 72
S K+++ V
Sbjct: 66 SARKAWLVV 74
>TIGR_CMR|APH_0289 [details] [associations]
symbol:APH_0289 "ribosomal protein S17" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS] [GO:0042255
"ribosome assembly" evidence=ISS] InterPro:IPR000266
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000235 GenomeReviews:CP000235_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 KO:K02961
PANTHER:PTHR10744 RefSeq:YP_504901.1 ProteinModelPortal:Q2GL50
STRING:Q2GL50 GeneID:3930501 KEGG:aph:APH_0289 PATRIC:20949152
eggNOG:NOG138354 HOGENOM:HOG000231339 OMA:VVKIREH
ProtClustDB:PRK05610 BioCyc:APHA212042:GHPM-319-MONOMER
HAMAP:MF_01345_B TIGRFAMs:TIGR03635 Uniprot:Q2GL50
Length = 76
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 24/67 (35%), Positives = 32/67 (47%)
Query: 6 GRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISK 65
G V A DKTV V V R+ H HD +N+ GD+V++ + PIS
Sbjct: 8 GVVTDARRDKTVKVSVYRMVHHKVYKKIVKKCRVYSVHDEQNRCARGDVVKIREHVPISA 67
Query: 66 TKSFIAV 72
TK +I V
Sbjct: 68 TKRWIVV 74
>UNIPROTKB|P95058 [details] [associations]
symbol:rpsQ "30S ribosomal protein S17" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000266
InterPro:IPR019979 InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 GO:GO:0005886 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006412 GO:GO:0005840 EMBL:BX842574 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635 PIR:A70643
RefSeq:NP_215224.1 RefSeq:NP_335154.1 RefSeq:YP_006514054.1
ProteinModelPortal:P95058 SMR:P95058
EnsemblBacteria:EBMYCT00000003853 EnsemblBacteria:EBMYCT00000069493
GeneID:13318599 GeneID:888391 GeneID:926027 KEGG:mtc:MT0737
KEGG:mtu:Rv0710 KEGG:mtv:RVBD_0710 PATRIC:18123351
TubercuList:Rv0710 OMA:GPKHTPS Uniprot:P95058
Length = 135
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 6 GRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISK 65
G VV KT+ VE+ HP +AHD ++ +GD V L ++RP+S
Sbjct: 62 GYVVSDKMQKTIVVELEDRMRHPLYGKIIRTTKKVKAHDEDSVAGIGDRVSLMETRPLSA 121
Query: 66 TK 67
TK
Sbjct: 122 TK 123
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.308 0.124 0.337 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 107 95 0.00091 102 3 11 23 0.44 30
29 0.43 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 478 (51 KB)
Total size of DFA: 89 KB (2067 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.85u 0.18s 10.03t Elapsed: 00:00:01
Total cpu time: 9.86u 0.18s 10.04t Elapsed: 00:00:01
Start: Fri May 10 09:53:51 2013 End: Fri May 10 09:53:52 2013