BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033970
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P16180|RR17_ARATH 30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana
GN=RPS17 PE=2 SV=1
Length = 149
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/103 (71%), Positives = 86/103 (83%), Gaps = 5/103 (4%)
Query: 1 MKKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKS 60
MK MQGRVVCA+SDKTVAVEVVRL PHPKYKRR+R KKKYQAHDP+NQF+VGD+V+LEKS
Sbjct: 50 MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109
Query: 61 RPISKTKSFIAVAMPPRNASKKAAGESSNAGNNELGIPLESEQ 103
RPISKTKSF+A+ + R A K AG G+ LG+PLES+Q
Sbjct: 110 RPISKTKSFVALPVIARAARKAEAG-----GDELLGLPLESQQ 147
>sp|P17092|RR17_PEA 30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum
sativum GN=RPS17 PE=2 SV=1
Length = 134
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 82/104 (78%), Gaps = 7/104 (6%)
Query: 1 MKKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKS 60
MK M+G+VVCAS +KTVAVEV RL PHPKY++RIR KKKYQAHDPEN F+VGD+VQL K+
Sbjct: 38 MKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKRIRLKKKYQAHDPENDFKVGDIVQLLKT 97
Query: 61 RPISKTKSFIAVAMPPRNASKKAAGESSNAGNNELGIPLESEQQ 104
RPISK K+F+AV P R + K AG S ELGIPL+S+Q+
Sbjct: 98 RPISKKKTFLAVPAPSRKSKK--AGSS-----GELGIPLQSQQE 134
>sp|Q9ZST1|RR17_ORYSJ 30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp.
japonica GN=RPS17 PE=2 SV=1
Length = 145
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 68/81 (83%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
K++ GRVV +DKTV VEVVRL PHPKYKRR R KKKYQAHDP+NQF+VGD+V+L +SR
Sbjct: 38 KQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELRRSR 97
Query: 62 PISKTKSFIAVAMPPRNASKK 82
PISKTK F+AV +PPR+ +K
Sbjct: 98 PISKTKHFLAVPLPPRDTRRK 118
>sp|Q9TJN6|RR17_MAIZE 30S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2
SV=1
Length = 132
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 69/82 (84%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
+++ GRVV +DKTV VEVVRL PHPKYKRR R KKKYQAHDP+NQF+VGD+V+L+ SR
Sbjct: 33 RQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELQPSR 92
Query: 62 PISKTKSFIAVAMPPRNASKKA 83
PISKTK F+A+ +PPR+ +K+
Sbjct: 93 PISKTKHFLAIPLPPRDTRRKS 114
>sp|A9BH96|RS17_PETMO 30S ribosomal protein S17 OS=Petrotoga mobilis (strain DSM 10674
/ SJ95) GN=rpsQ PE=3 SV=1
Length = 110
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 54/77 (70%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
K + G+VV + DKT+ VE RL HPKY + +RK ++Y AHD N+ ++GD+V++E+SR
Sbjct: 4 KIITGKVVSNAMDKTITVETDRLTKHPKYHKFVRKTRRYHAHDENNECEIGDIVEIEESR 63
Query: 62 PISKTKSFIAVAMPPRN 78
+SKTK+F+ + +N
Sbjct: 64 KLSKTKAFVLKRIVRKN 80
>sp|Q1RHN0|RS17_RICBR 30S ribosomal protein S17 OS=Rickettsia bellii (strain RML369-C)
GN=rpsQ PE=3 SV=1
Length = 77
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ + +DKTV V+V R HP YK+ I+ KKY AHDP N+FQ GD V + +SRPI
Sbjct: 6 LQGVVISSKTDKTVTVKVERRFKHPIYKKFIKVSKKYAAHDPNNKFQEGDKVNIIESRPI 65
Query: 64 SKTKSFIAV 72
SKTK+++ +
Sbjct: 66 SKTKTWVVI 74
>sp|A8GVC3|RS17_RICB8 30S ribosomal protein S17 OS=Rickettsia bellii (strain OSU
85-389) GN=rpsQ PE=3 SV=1
Length = 77
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ + +DKTV V+V R HP YK+ I+ KKY AHDP N+FQ GD V + +SRPI
Sbjct: 6 LQGVVISSKTDKTVTVKVERRFKHPIYKKFIKVSKKYAAHDPNNKFQEGDKVNIIESRPI 65
Query: 64 SKTKSFIAV 72
SKTK+++ +
Sbjct: 66 SKTKTWVVI 74
>sp|C3PP98|RS17_RICAE 30S ribosomal protein S17 OS=Rickettsia africae (strain ESF-5)
GN=rpsQ PE=3 SV=1
Length = 82
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ + +DKTV V+V R HP YK+ ++ KKY AHD EN++Q GD V + +SRPI
Sbjct: 11 LQGVVISSKADKTVTVKVERKFKHPIYKKFVKVSKKYAAHDSENKYQEGDKVSIIESRPI 70
Query: 64 SKTKSFIAV 72
SKTK++I V
Sbjct: 71 SKTKTWIVV 79
>sp|A8GPE1|RS17_RICAH 30S ribosomal protein S17 OS=Rickettsia akari (strain Hartford)
GN=rpsQ PE=3 SV=1
Length = 77
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ + +DKTV V+V R HP YK+ ++ KKY AHD EN++Q GD V + +SRPI
Sbjct: 6 LQGVVISSKADKTVTVKVERKFKHPIYKKFVKVSKKYAAHDSENKYQEGDKVSIIESRPI 65
Query: 64 SKTKSFIAV 72
SKTK++I V
Sbjct: 66 SKTKTWIVV 74
>sp|A8EZK7|RS17_RICCK 30S ribosomal protein S17 OS=Rickettsia canadensis (strain
McKiel) GN=rpsQ PE=3 SV=1
Length = 77
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ + +DKTV V+V R HP YK+ ++ KKY AHD EN++Q GD V + +SRPI
Sbjct: 6 LQGVVISSKADKTVTVKVERKFKHPIYKKFVKVSKKYAAHDSENRYQEGDKVSIIESRPI 65
Query: 64 SKTKSFIAV 72
SKTK++I V
Sbjct: 66 SKTKTWIVV 74
>sp|B0BUQ1|RS17_RICRO 30S ribosomal protein S17 OS=Rickettsia rickettsii (strain Iowa)
GN=rpsQ PE=3 SV=1
Length = 82
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 50/69 (72%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ + +DKTV V+V R HP YK+ ++ KKY AHD EN++Q GD V + +SRPI
Sbjct: 11 LQGVVISSKADKTVTVKVERKFKHPIYKKFVKVSKKYAAHDSENKYQEGDKVSIIESRPI 70
Query: 64 SKTKSFIAV 72
SKTK+++ V
Sbjct: 71 SKTKTWVVV 79
>sp|A8GT60|RS17_RICRS 30S ribosomal protein S17 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rpsQ PE=3 SV=1
Length = 77
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 50/69 (72%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ + +DKTV V+V R HP YK+ ++ KKY AHD EN++Q GD V + +SRPI
Sbjct: 6 LQGVVISSKADKTVTVKVERKFKHPIYKKFVKVSKKYAAHDSENKYQEGDKVSIIESRPI 65
Query: 64 SKTKSFIAV 72
SKTK+++ V
Sbjct: 66 SKTKTWVVV 74
>sp|C4K2H0|RS17_RICPU 30S ribosomal protein S17 OS=Rickettsia peacockii (strain Rustic)
GN=rpsQ PE=3 SV=1
Length = 77
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 50/69 (72%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ + +DKTV V+V R HP YK+ ++ KKY AHD EN++Q GD V + +SRPI
Sbjct: 6 LQGVVISSKADKTVTVKVERKFKHPIYKKFVKVSKKYAAHDSENKYQEGDKVSIIESRPI 65
Query: 64 SKTKSFIAV 72
SKTK+++ V
Sbjct: 66 SKTKTWVVV 74
>sp|Q92GX5|RS17_RICCN 30S ribosomal protein S17 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=rpsQ PE=3 SV=2
Length = 77
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 50/69 (72%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ + +DKTV V+V R HP YK+ ++ KKY AHD EN++Q GD V + +SRPI
Sbjct: 6 LQGVVISSKADKTVTVKVERKFKHPIYKKFVKVSKKYAAHDSENKYQEGDKVSIIESRPI 65
Query: 64 SKTKSFIAV 72
SKTK+++ V
Sbjct: 66 SKTKTWVVV 74
>sp|Q4UMS0|RS17_RICFE 30S ribosomal protein S17 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=rpsQ PE=3 SV=1
Length = 82
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 50/69 (72%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ + +DKTV V+V R HP YK+ ++ KKY AHD EN++Q GD V + +SRPI
Sbjct: 11 LQGVVISSKADKTVTVKVERKFKHPIYKKFVKVSKKYAAHDSENKYQEGDKVSIIESRPI 70
Query: 64 SKTKSFIAV 72
SKTK+++ V
Sbjct: 71 SKTKTWLVV 79
>sp|Q6FZD1|RS17_BARQU 30S ribosomal protein S17 OS=Bartonella quintana (strain
Toulouse) GN=rpsQ PE=3 SV=1
Length = 79
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV SDKTV V+V R HP K+ +R+ KKY+AHD NQF++GD + +++S+PI
Sbjct: 6 LQGVVVSDKSDKTVVVKVERRYSHPLLKKTVRQSKKYKAHDENNQFKIGDQISIQESKPI 65
Query: 64 SKTKSFIAV 72
SK K +I V
Sbjct: 66 SKDKRWIVV 74
>sp|A9IW16|RS17_BART1 30S ribosomal protein S17 OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=rpsQ PE=3 SV=1
Length = 79
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ SDKTV V+V R HP K+ +R+ K Y+AHD NQF++GD V +++SRPI
Sbjct: 6 LQGVVISDKSDKTVVVKVERRYSHPLLKKTVRQSKNYKAHDENNQFKIGDQVSIQESRPI 65
Query: 64 SKTKSFIAV 72
SK K +I V
Sbjct: 66 SKDKCWIVV 74
>sp|C5CGQ5|RS17_KOSOT 30S ribosomal protein S17 OS=Kosmotoga olearia (strain TBF
19.5.1) GN=rpsQ PE=3 SV=1
Length = 101
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
KK+ G VV DKTV V V R HP YK+ +++ KKY AHD +N +GD+V++E+ R
Sbjct: 4 KKLVGTVVSNKMDKTVVVRVERTFAHPLYKKTVKRAKKYHAHDEDNSCGIGDIVEIEECR 63
Query: 62 PISKTKSFIAVAMPPRNASKKAAGE 86
P+SKTK F V R K GE
Sbjct: 64 PLSKTKKFKVV----RIVKKSVFGE 84
>sp|A0L5Y2|RS17_MAGSM 30S ribosomal protein S17 OS=Magnetococcus sp. (strain MC-1)
GN=rpsQ PE=3 SV=1
Length = 83
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
MQG VV DKTV V V R HP Y + +R+ KKY+AHD ENQ++ GD+V +++SRP+
Sbjct: 6 MQGVVVSDKMDKTVVVLVERKVRHPLYGKIVRQSKKYKAHDEENQYRTGDMVMIQESRPL 65
Query: 64 SKTKSFIA 71
SK K+++
Sbjct: 66 SKDKNWVV 73
>sp|P38519|RS17_THEMA 30S ribosomal protein S17 OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=rpsQ PE=3 SV=2
Length = 107
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
K++ G VV DKTV V V +L HP YK+ +++ KKY AHD N+ ++GD+V++E++R
Sbjct: 4 KRLTGIVVSDKMDKTVVVAVEKLVQHPLYKKYVKRTKKYHAHDERNECKIGDVVEIEETR 63
Query: 62 PISKTKSFIAVAMPPRNASKKAAGESSN 89
P+SKTK + V + R ++ E +
Sbjct: 64 PLSKTKRWRVVRIIQRFEPERVVKEKED 91
>sp|Q7NQG1|RS17_CHRVO 30S ribosomal protein S17 OS=Chromobacterium violaceum (strain
ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB
9131 / NCTC 9757) GN=rpsQ PE=3 SV=1
Length = 87
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%)
Query: 1 MKKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKS 60
++ + G VV DKTV V V R HP Y + IR+ KK+ AHD N+F+ GDLV + +S
Sbjct: 7 VRTLTGVVVSDKMDKTVTVLVERKVKHPIYGKIIRRSKKFHAHDENNEFKAGDLVVISES 66
Query: 61 RPISKTKSFIAVAM 74
RP+SKTKS++ +
Sbjct: 67 RPLSKTKSWVVTGL 80
>sp|A6X0C7|RS17_OCHA4 30S ribosomal protein S17 OS=Ochrobactrum anthropi (strain ATCC
49188 / DSM 6882 / NCTC 12168) GN=rpsQ PE=3 SV=1
Length = 80
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V+V R HP ++ +R+ KKY+AHD NQF+VGDLV +++S PI
Sbjct: 6 LQGVVVSDKNDKTVVVKVERRYSHPLLQKTVRQSKKYKAHDENNQFKVGDLVSIQESAPI 65
Query: 64 SKTKSFIAVA 73
SK K ++ +
Sbjct: 66 SKDKRWVVLT 75
>sp|B9K895|RS17_THENN 30S ribosomal protein S17 OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=rpsQ PE=3 SV=1
Length = 112
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
K+M G VV DKTV V V R HP YK+ I++ KKY AHD +N+ +VGD+V++E++R
Sbjct: 4 KRMIGVVVSDKMDKTVVVAVERHVQHPLYKKYIKRTKKYHAHDEKNECRVGDVVEIEETR 63
Query: 62 PISKTKSFIAVAMPPR 77
P+SKTK + V + R
Sbjct: 64 PLSKTKRWRVVKIIKR 79
>sp|Q0ABG6|RS17_ALHEH 30S ribosomal protein S17 OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=rpsQ PE=3 SV=1
Length = 87
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 51/78 (65%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
+ +QGRVV +DKT+ V V R HP Y + IR+ K QAHD N+ QVGD+V +E+ R
Sbjct: 9 RNVQGRVVSNKADKTITVLVERRVRHPLYGKYIRRSSKMQAHDEGNECQVGDVVTIEQCR 68
Query: 62 PISKTKSFIAVAMPPRNA 79
PISK+K++ V + R A
Sbjct: 69 PISKSKAWRLVKVLERAA 86
>sp|A7IFZ0|RS17_XANP2 30S ribosomal protein S17 OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=rpsQ PE=3 SV=1
Length = 82
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V V R HP K+ +R+ KKY AHD N ++VGD V +E+ RPI
Sbjct: 6 LQGVVVSDKTDKTVVVRVERRFTHPLLKKTVRRSKKYHAHDEANAWKVGDTVWIEEHRPI 65
Query: 64 SKTKSFIAV 72
SK K++I +
Sbjct: 66 SKLKNWIVI 74
>sp|Q68W87|RS17_RICTY 30S ribosomal protein S17 OS=Rickettsia typhi (strain ATCC VR-144
/ Wilmington) GN=rpsQ PE=3 SV=1
Length = 82
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 50/69 (72%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ + +DKTV V+V R HP YK+ ++ KKY AHD EN+++ GD V + +SRPI
Sbjct: 11 LQGVVISSKTDKTVTVKVERKFKHPIYKKFVKVSKKYAAHDIENKYREGDKVSIVESRPI 70
Query: 64 SKTKSFIAV 72
SKTK+++ V
Sbjct: 71 SKTKTWVVV 79
>sp|Q92QG1|RS17_RHIME 30S ribosomal protein S17 OS=Rhizobium meliloti (strain 1021)
GN=rpsQ PE=3 SV=1
Length = 78
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V V R HP ++ +R+ KKY+AHD NQF+VGDLV +E+ PI
Sbjct: 6 LQGTVVSDKNDKTVVVRVERRFAHPILQKTVRRSKKYKAHDENNQFKVGDLVSIEECAPI 65
Query: 64 SKTKSFIAVA 73
SK K + V+
Sbjct: 66 SKDKRWTVVS 75
>sp|A6U868|RS17_SINMW 30S ribosomal protein S17 OS=Sinorhizobium medicae (strain
WSM419) GN=rpsQ PE=3 SV=1
Length = 78
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V V R HP ++ +R+ KKY+AHD NQF+VGDLV +E+ PI
Sbjct: 6 LQGTVVSDKNDKTVVVRVERRFAHPILQKTVRRSKKYKAHDESNQFKVGDLVSIEECAPI 65
Query: 64 SKTKSFIAVA 73
SK K + V+
Sbjct: 66 SKDKRWTVVS 75
>sp|B6IRR5|RS17_RHOCS 30S ribosomal protein S17 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rpsQ PE=3 SV=1
Length = 85
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 46/70 (65%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV DKTV V V R HP YK+ I++ KKY AHD N F++GD+VQ+E+ RPI
Sbjct: 6 LQGTVVSDKGDKTVIVLVERRVMHPVYKKFIKQSKKYAAHDEANAFKIGDVVQIEECRPI 65
Query: 64 SKTKSFIAVA 73
SK K + V
Sbjct: 66 SKRKRWTVVT 75
>sp|A5IM92|RS17_THEP1 30S ribosomal protein S17 OS=Thermotoga petrophila (strain RKU-1
/ ATCC BAA-488 / DSM 13995) GN=rpsQ PE=3 SV=1
Length = 107
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 52/76 (68%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
K++ G VV DKTV V V +L HP YK+ +++ KKY AHD N+ ++GD+V++E++R
Sbjct: 4 KRLTGIVVSDKMDKTVVVAVEKLVQHPIYKKYVKRTKKYHAHDERNECKIGDVVEIEETR 63
Query: 62 PISKTKSFIAVAMPPR 77
P+SKTK + V + R
Sbjct: 64 PLSKTKRWRVVRIIQR 79
>sp|Q9ZCR4|RS17_RICPR 30S ribosomal protein S17 OS=Rickettsia prowazekii (strain Madrid
E) GN=rpsQ PE=3 SV=1
Length = 77
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V+ + +DKTV V+V R HP YK+ ++ KKY AHD EN+++ GD V + +SRPI
Sbjct: 6 LQGVVISSKTDKTVTVKVERKFKHPIYKKFVKVSKKYAAHDIENKYKEGDKVSIVESRPI 65
Query: 64 SKTKSFIAVAM 74
SKTK+++ + +
Sbjct: 66 SKTKTWVVLNL 76
>sp|B9KLA0|RS17_RHOSK 30S ribosomal protein S17 OS=Rhodobacter sphaeroides (strain
KD131 / KCTC 12085) GN=rpsQ PE=3 SV=1
Length = 80
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V +++TV V V R HP K+ +R KKY+AHDPENQF+VGD+V++E+ PI
Sbjct: 6 LQGTVTSDKNEQTVTVLVERRFKHPLLKKTVRLSKKYRAHDPENQFKVGDIVRIEECAPI 65
Query: 64 SKTKSFIAVA 73
SKTK + V
Sbjct: 66 SKTKRWKVVT 75
>sp|Q3J5R3|RS17_RHOS4 30S ribosomal protein S17 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsQ PE=3 SV=1
Length = 80
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V +++TV V V R HP K+ +R KKY+AHDPENQF+VGD+V++E+ PI
Sbjct: 6 LQGTVTSDKNEQTVTVLVERRFKHPLLKKTVRLSKKYRAHDPENQFKVGDIVRIEECAPI 65
Query: 64 SKTKSFIAVA 73
SKTK + V
Sbjct: 66 SKTKRWKVVT 75
>sp|A3PGM0|RS17_RHOS1 30S ribosomal protein S17 OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rpsQ PE=3 SV=1
Length = 80
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V +++TV V V R HP K+ +R KKY+AHDPENQF+VGD+V++E+ PI
Sbjct: 6 LQGTVTSDKNEQTVTVLVERRFKHPLLKKTVRLSKKYRAHDPENQFKVGDIVRIEECAPI 65
Query: 64 SKTKSFIAVA 73
SKTK + V
Sbjct: 66 SKTKRWKVVT 75
>sp|A4WVJ9|RS17_RHOS5 30S ribosomal protein S17 OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rpsQ PE=3 SV=1
Length = 80
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG V +++TV V V R HP K+ +R KKY+AHDPENQF+VGD+V++E+ PI
Sbjct: 6 LQGTVTSDKNEQTVTVLVERRFKHPLLKKTVRLSKKYRAHDPENQFKVGDVVRIEECAPI 65
Query: 64 SKTKSFIAVA 73
SKTK + V
Sbjct: 66 SKTKRWKVVT 75
>sp|A8F4S0|RS17_THELT 30S ribosomal protein S17 OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=rpsQ PE=3 SV=1
Length = 95
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
K++ G VV DKTV VEV R HP YK+ I++ KKY AHD +N+ + GD V +E++R
Sbjct: 4 KRLTGVVVSNKMDKTVVVEVTRKLEHPVYKKYIQRSKKYYAHDEKNECKAGDTVLIEETR 63
Query: 62 PISKTKSFIAVAMPPRNASKKAAGESSNAGNNE 94
P+SK K + V + R A E+ N +E
Sbjct: 64 PLSKMKRWRVVEVLKREV---IAEETLNTKESE 93
>sp|O66439|RS17_AQUAE 30S ribosomal protein S17 OS=Aquifex aeolicus (strain VF5)
GN=rpsQ PE=3 SV=1
Length = 107
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 49/76 (64%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
K + G VV DKTV V+V R PHP Y + I K KKY AHD N+ +VGD+V + ++R
Sbjct: 15 KHLVGVVVSDKMDKTVVVKVDRKVPHPIYGKHIIKSKKYHAHDEHNECRVGDIVMIRETR 74
Query: 62 PISKTKSFIAVAMPPR 77
P+SKTK ++ V + R
Sbjct: 75 PLSKTKRWVVVKILQR 90
>sp|Q6G2X4|RS17_BARHE 30S ribosomal protein S17 OS=Bartonella henselae (strain ATCC
49882 / Houston 1) GN=rpsQ PE=3 SV=1
Length = 79
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 49/69 (71%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V+V R HP K+ +R+ KKY+AHD NQF++GD + +++S+PI
Sbjct: 6 LQGVVVSDKNDKTVVVKVERRYSHPLLKKTVRQSKKYKAHDESNQFKIGDQIFIQESKPI 65
Query: 64 SKTKSFIAV 72
SK K +I V
Sbjct: 66 SKDKRWIVV 74
>sp|Q89J93|RS17_BRAJA 30S ribosomal protein S17 OS=Bradyrhizobium japonicum (strain
USDA 110) GN=rpsQ PE=3 SV=1
Length = 82
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
+ +QG VV + KTV V V R HP YK+ IR+ K Y AHD N+F+ GD+V +E+S+
Sbjct: 4 RTLQGVVVSDKTAKTVVVRVDRRFTHPIYKKTIRRSKNYHAHDENNEFKPGDMVWIEESK 63
Query: 62 PISKTKSFIAVAMPPRNASKKAA 84
PISK K ++ + R KK+A
Sbjct: 64 PISKLKRWVVI----RGEHKKSA 82
>sp|B5ELY8|RS17_ACIF5 30S ribosomal protein S17 OS=Acidithiobacillus ferrooxidans
(strain ATCC 53993) GN=rpsQ PE=3 SV=1
Length = 91
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
+ + G VV DK++ V V R HP YK+ IR+ KK+ AHD EN +GD+V++E+ R
Sbjct: 8 RSLVGTVVSNLMDKSIVVNVERRIQHPLYKKYIRRSKKFHAHDAENICHIGDIVKIEECR 67
Query: 62 PISKTKSFIAVAM 74
P+SKTKS+ V++
Sbjct: 68 PLSKTKSWRLVSV 80
>sp|B7J476|RS17_ACIF2 30S ribosomal protein S17 OS=Acidithiobacillus ferrooxidans
(strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpsQ
PE=3 SV=1
Length = 91
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
+ + G VV DK++ V V R HP YK+ IR+ KK+ AHD EN +GD+V++E+ R
Sbjct: 8 RSLVGTVVSNLMDKSIVVNVERRIQHPLYKKYIRRSKKFHAHDAENICHIGDIVKIEECR 67
Query: 62 PISKTKSFIAVAM 74
P+SKTKS+ V++
Sbjct: 68 PLSKTKSWRLVSV 80
>sp|Q8G082|RS17_BRUSU 30S ribosomal protein S17 OS=Brucella suis biovar 1 (strain 1330)
GN=rpsQ PE=3 SV=1
Length = 80
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V+V R HP ++ +R+ KKY+AHD NQF+VGD V +++S PI
Sbjct: 6 LQGVVVSDKNDKTVVVKVERRYSHPLLQKTVRQSKKYKAHDENNQFKVGDFVSIQESAPI 65
Query: 64 SKTKSFIAVA 73
SK K ++ +
Sbjct: 66 SKDKRWVVLT 75
>sp|A5VQZ7|RS17_BRUO2 30S ribosomal protein S17 OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rpsQ PE=3 SV=1
Length = 80
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V+V R HP ++ +R+ KKY+AHD NQF+VGD V +++S PI
Sbjct: 6 LQGVVVSDKNDKTVVVKVERRYSHPLLQKTVRQSKKYKAHDENNQFKVGDFVSIQESAPI 65
Query: 64 SKTKSFIAVA 73
SK K ++ +
Sbjct: 66 SKDKRWVVLT 75
>sp|Q8YHN1|RS17_BRUME 30S ribosomal protein S17 OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=rpsQ PE=3
SV=1
Length = 80
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V+V R HP ++ +R+ KKY+AHD NQF+VGD V +++S PI
Sbjct: 6 LQGVVVSDKNDKTVVVKVERRYSHPLLQKTVRQSKKYKAHDENNQFKVGDFVSIQESAPI 65
Query: 64 SKTKSFIAVA 73
SK K ++ +
Sbjct: 66 SKDKRWVVLT 75
>sp|C0RJJ2|RS17_BRUMB 30S ribosomal protein S17 OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=rpsQ PE=3 SV=1
Length = 80
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V+V R HP ++ +R+ KKY+AHD NQF+VGD V +++S PI
Sbjct: 6 LQGVVVSDKNDKTVVVKVERRYSHPLLQKTVRQSKKYKAHDENNQFKVGDFVSIQESAPI 65
Query: 64 SKTKSFIAVA 73
SK K ++ +
Sbjct: 66 SKDKRWVVLT 75
>sp|A9M5P1|RS17_BRUC2 30S ribosomal protein S17 OS=Brucella canis (strain ATCC 23365 /
NCTC 10854) GN=rpsQ PE=3 SV=1
Length = 80
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V+V R HP ++ +R+ KKY+AHD NQF+VGD V +++S PI
Sbjct: 6 LQGVVVSDKNDKTVVVKVERRYSHPLLQKTVRQSKKYKAHDENNQFKVGDFVSIQESAPI 65
Query: 64 SKTKSFIAVA 73
SK K ++ +
Sbjct: 66 SKDKRWVVLT 75
>sp|Q57CR7|RS17_BRUAB 30S ribosomal protein S17 OS=Brucella abortus biovar 1 (strain
9-941) GN=rpsQ PE=3 SV=1
Length = 80
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V+V R HP ++ +R+ KKY+AHD NQF+VGD V +++S PI
Sbjct: 6 LQGVVVSDKNDKTVVVKVERRYSHPLLQKTVRQSKKYKAHDENNQFKVGDFVSIQESAPI 65
Query: 64 SKTKSFIAVA 73
SK K ++ +
Sbjct: 66 SKDKRWVVLT 75
>sp|Q2YRA4|RS17_BRUA2 30S ribosomal protein S17 OS=Brucella abortus (strain 2308)
GN=rpsQ PE=3 SV=1
Length = 80
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V+V R HP ++ +R+ KKY+AHD NQF+VGD V +++S PI
Sbjct: 6 LQGVVVSDKNDKTVVVKVERRYSHPLLQKTVRQSKKYKAHDENNQFKVGDFVSIQESAPI 65
Query: 64 SKTKSFIAVA 73
SK K ++ +
Sbjct: 66 SKDKRWVVLT 75
>sp|B2S670|RS17_BRUA1 30S ribosomal protein S17 OS=Brucella abortus (strain S19)
GN=rpsQ PE=3 SV=1
Length = 80
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPI 63
+QG VV +DKTV V+V R HP ++ +R+ KKY+AHD NQF+VGD V +++S PI
Sbjct: 6 LQGVVVSDKNDKTVVVKVERRYSHPLLQKTVRQSKKYKAHDENNQFKVGDFVSIQESAPI 65
Query: 64 SKTKSFIAVA 73
SK K ++ +
Sbjct: 66 SKDKRWVVLT 75
>sp|B5YG38|RS17_THEYD 30S ribosomal protein S17 OS=Thermodesulfovibrio yellowstonii
(strain ATCC 51303 / DSM 11347 / YP87) GN=rpsQ PE=3
SV=1
Length = 83
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSR 61
K ++G VV DKTV V V R+ HP YK+ I+ +KKY+AHD EN Q+GD+V++ +S
Sbjct: 4 KILKGTVVSDKMDKTVVVSVERVFQHPLYKKTIKTRKKYKAHDEENICQLGDMVEIIESS 63
Query: 62 PISKTKSF 69
PISKTK +
Sbjct: 64 PISKTKRW 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,553,557
Number of Sequences: 539616
Number of extensions: 1275840
Number of successful extensions: 3566
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2762
Number of HSP's gapped (non-prelim): 799
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)