Query 033970
Match_columns 107
No_of_seqs 113 out of 1009
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qd7_I S17 ribosomal protein; 100.0 5.8E-38 2E-42 213.1 11.6 80 2-81 3-82 (89)
2 3r8n_Q 30S ribosomal protein S 100.0 1.7E-37 5.7E-42 207.1 6.7 77 2-78 3-79 (80)
3 2vqe_Q 30S ribosomal protein S 100.0 1.7E-36 5.9E-41 211.2 10.9 79 2-80 4-82 (105)
4 3j20_R 30S ribosomal protein S 100.0 3.4E-35 1.2E-39 206.9 13.1 79 2-80 32-111 (113)
5 3bbn_Q Ribosomal protein S17; 100.0 8.8E-36 3E-40 216.7 10.2 80 1-80 60-139 (142)
6 2xzm_Q Ribosomal protein S17 c 100.0 6.4E-34 2.2E-38 209.8 13.1 78 2-79 68-146 (157)
7 3u5c_L RP41, S18, YS12, 40S ri 100.0 1E-33 3.5E-38 208.5 12.2 78 2-79 69-147 (156)
8 2zkq_q 40S ribosomal protein S 100.0 1.6E-33 5.5E-38 207.9 9.3 78 2-79 71-150 (158)
9 3iz6_P 40S ribosomal protein S 100.0 2.4E-33 8.2E-38 207.4 -6.3 79 2-80 70-149 (161)
10 2dgy_A MGC11102 protein; EIF-1 66.0 27 0.00094 23.5 6.8 51 3-67 16-72 (111)
11 1jt8_A EIF-1A, probable transl 58.5 32 0.0011 22.9 6.0 51 3-67 21-77 (102)
12 1d7q_A Translation initiation 52.3 54 0.0019 23.1 6.7 53 3-69 32-89 (143)
13 1a62_A RHO; transcription term 35.5 45 0.0015 22.7 3.9 34 48-81 90-123 (130)
14 2ot2_A Hydrogenase isoenzymes 34.5 23 0.0008 23.1 2.2 18 43-60 36-53 (90)
15 1ah9_A IF1, initiation factor 25.2 61 0.0021 19.5 2.9 51 3-67 7-63 (71)
16 4he6_A Peptidase family U32; u 23.7 1.2E+02 0.004 18.6 4.1 35 44-80 25-59 (89)
17 3i4o_A Translation initiation 23.6 1.4E+02 0.0049 18.7 4.9 51 3-67 15-71 (79)
18 1g31_A GP31; chaperone, CO-cha 23.5 1.1E+02 0.0039 20.5 4.2 16 45-60 59-74 (111)
19 2vl6_A SSO MCM N-TER, minichro 23.5 52 0.0018 24.3 2.7 26 35-60 210-236 (268)
20 4hik_A Protection of telomeres 22.8 64 0.0022 22.5 2.9 62 4-65 19-100 (143)
21 1ltl_A DNA replication initiat 22.1 48 0.0016 24.8 2.3 26 35-60 197-223 (279)
22 3lwc_A Uncharacterized protein 21.4 1.5E+02 0.0051 19.0 4.4 60 3-62 26-94 (119)
23 2oqk_A Putative translation in 21.0 1.9E+02 0.0065 19.2 5.7 60 4-78 34-98 (117)
24 3u5c_c S33, YS27, 40S ribosoma 20.5 57 0.002 20.4 2.0 22 40-61 39-60 (67)
25 3iuw_A Activating signal coint 20.0 54 0.0018 21.1 1.9 42 36-77 25-66 (83)
No 1
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=100.00 E-value=5.8e-38 Score=213.11 Aligned_cols=80 Identities=40% Similarity=0.635 Sum_probs=77.4
Q ss_pred ceEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECCCCCCCCCCEEEEeecccCCCceeEEEEEeecCCccc
Q 033970 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASK 81 (107)
Q Consensus 2 k~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe~~~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~~~~~ 81 (107)
++|+|+|+|++|+|||+|+|+++++||+|+|+++++++|+||||+|+|++||+|+|+|||||||+|+|.|.+|++++...
T Consensus 3 k~l~G~VvS~Km~KTivV~ve~~~~hp~Y~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~RPlSKtK~~~vv~iv~~a~~~ 82 (89)
T 1qd7_I 3 KVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKAVRA 82 (89)
T ss_pred EEEEEEEEecCCCceEEEEEEEEEEcCccceEEeccEEEEEeCCccCCCCCCEEEEEEcccCCCCEEEEEEEEEeeceee
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999988644
No 2
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=100.00 E-value=1.7e-37 Score=207.14 Aligned_cols=77 Identities=35% Similarity=0.651 Sum_probs=75.5
Q ss_pred ceEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECCCCCCCCCCEEEEeecccCCCceeEEEEEeecCC
Q 033970 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRN 78 (107)
Q Consensus 2 k~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe~~~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~~ 78 (107)
++|.|+|+|++|+|||+|+|+++++||+|+|+++++++|+||||.|+|++||+|+|+|||||||+|+|.|.+|++++
T Consensus 3 r~l~G~VvS~km~KTvvV~v~~~~~hp~Y~K~~kr~kk~~aHDe~n~~~~GD~V~I~e~RPlSKtk~~~v~~i~~~~ 79 (80)
T 3r8n_Q 3 RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 79 (80)
T ss_dssp SCBCCEEEECCSTTCCEEECCEEEEETTTEEEEEECCEEECBCGGGCCCTTCEEEEEEEEEEETTEEEEEEEEECCC
T ss_pred eEEEEEEEecCCCCeEEEEEEEEEEcccccccEEecceEEEECCCCCCCCCCEEEEEEeccCCCcEeEEEEEEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=100.00 E-value=1.7e-36 Score=211.15 Aligned_cols=79 Identities=43% Similarity=0.675 Sum_probs=77.1
Q ss_pred ceEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECCCCCCCCCCEEEEeecccCCCceeEEEEEeecCCcc
Q 033970 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNAS 80 (107)
Q Consensus 2 k~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe~~~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~~~~ 80 (107)
++|.|+|+|++|+|||+|+|+++++||+|+|+++++++|+||||+|+|++||+|+|.|||||||+|+|.|.+|++++..
T Consensus 4 k~l~G~VvS~Km~KTivV~ver~~~hpkY~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~RPlSKtKr~~vv~iv~~a~~ 82 (105)
T 2vqe_Q 4 KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRM 82 (105)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEECTTCCCCTTCEEEEEEEEEEETTEEEEEEEEEECCCH
T ss_pred eEEEEEEEecCCCcEEEEEEEEEEEcCccceEEecceEEEEECCCCCCCCCCEEEEEEcccCCCCEEEEEEEEeecccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999874
No 4
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.4e-35 Score=206.89 Aligned_cols=79 Identities=37% Similarity=0.479 Sum_probs=76.5
Q ss_pred ceEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECC-CCCCCCCCEEEEeecccCCCceeEEEEEeecCCcc
Q 033970 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDP-ENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNAS 80 (107)
Q Consensus 2 k~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe-~~~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~~~~ 80 (107)
++|.|+|+|++|+|||+|+|+++++||+|+|+++++++|+|||| .|+|++||+|+|+|||||||+|+|.|.+|+++|..
T Consensus 32 r~l~G~VvS~KM~KTivV~ve~~~~hpkY~K~~kr~kk~~aHDe~~n~~~vGD~V~I~E~RPlSKtKr~~vv~i~~~a~~ 111 (113)
T 3j20_R 32 RVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLIAETRPLSKTKHFVVVAVLERAEE 111 (113)
T ss_dssp CEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTSEEEEEECSCSSSSEEEEEEEECCCCCC
T ss_pred EEEEEEEEeccCCceEEEEEEEEEEcCcccEEEECceEEEEECCCCCCCCCCCEEEEEecccCCCcEeEEEEEEEecccc
Confidence 68999999999999999999999999999999999999999999 78999999999999999999999999999998864
No 5
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=8.8e-36 Score=216.72 Aligned_cols=80 Identities=79% Similarity=1.177 Sum_probs=77.4
Q ss_pred CceEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECCCCCCCCCCEEEEeecccCCCceeEEEEEeecCCcc
Q 033970 1 MKKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNAS 80 (107)
Q Consensus 1 ~k~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe~~~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~~~~ 80 (107)
+++|.|+|+|++|+|||+|+|+++++||+|+|+++++++|+||||+|+|++||+|+|+|||||||+|+|.|++|++++..
T Consensus 60 ~k~l~G~VVS~KMdKTIvV~Ver~~~hpkY~K~vkr~kKy~AHDe~n~~kvGD~V~I~E~RPLSKtKrw~VveIveka~~ 139 (142)
T 3bbn_Q 60 MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAAR 139 (142)
T ss_dssp CCEEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEECTTCCCCTTEEEEEEECCCSSSSCCEEECCCSEEECS
T ss_pred eEEEEEEEEEccCCceEEEEEEEEEEcCccccEEecceEEEEECCCCCCCCCCEEEEEEccCCCCcEEEEEEEEEecccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999988763
No 6
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=100.00 E-value=6.4e-34 Score=209.81 Aligned_cols=78 Identities=28% Similarity=0.416 Sum_probs=75.0
Q ss_pred ceEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEEC-CCCCCCCCCEEEEeecccCCCceeEEEEEeecCCc
Q 033970 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHD-PENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNA 79 (107)
Q Consensus 2 k~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHD-e~~~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~~~ 79 (107)
++|+|+|+|++|+|||+|+|+++++||+|+|+++++++|+||| |.|+|++||+|+|+|||||||+|+|.|++|++++.
T Consensus 68 r~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDee~n~~kvGD~V~I~EcRPLSKtKrw~Vv~I~~ka~ 146 (157)
T 2xzm_Q 68 KIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKEGDILVAGQCRPISKTVRFNALQVVPNEI 146 (157)
T ss_dssp CEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTCEEEEEECCCCSSSCCEEEEEECCCCC
T ss_pred EEEEEEEEEecCCccEEEEEEEEEecCccceEeecceeEEEECCCCCCCCCCCEEEEEEcCCCCCcEEEEEEEEEeccc
Confidence 6899999999999999999999999999999999999999999 56799999999999999999999999999998864
No 7
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=100.00 E-value=1e-33 Score=208.52 Aligned_cols=78 Identities=32% Similarity=0.479 Sum_probs=75.4
Q ss_pred ceEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECCC-CCCCCCCEEEEeecccCCCceeEEEEEeecCCc
Q 033970 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPE-NQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNA 79 (107)
Q Consensus 2 k~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe~-~~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~~~ 79 (107)
++|.|+|+|++|+|||+|+++++++||+|+|+++++++|+||||+ |.|++||+|+|+|||||||+|+|.|.+|+++++
T Consensus 69 r~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~ka~ 147 (156)
T 3u5c_L 69 KILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKVSAAAG 147 (156)
T ss_dssp EEEEEEEEECCSTTEEEEEEEEEEEEGGGTEEEEEEEEEEEECCTTSCCCTTCEEEEEEEEEEETTEEEEEEEECCCCS
T ss_pred EEEEEEEEeecCCCeEEEEEEEEeecCccceEEECceEEEEECCCcCcCCCCCEEEEEecccCCCcEeEEEEEEEecCC
Confidence 589999999999999999999999999999999999999999984 699999999999999999999999999999985
No 8
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=100.00 E-value=1.6e-33 Score=207.86 Aligned_cols=78 Identities=24% Similarity=0.363 Sum_probs=71.4
Q ss_pred ceEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECCC-C-CCCCCCEEEEeecccCCCceeEEEEEeecCCc
Q 033970 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPE-N-QFQVGDLVQLEKSRPISKTKSFIAVAMPPRNA 79 (107)
Q Consensus 2 k~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe~-~-~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~~~ 79 (107)
++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+||||+ | +|++||+|+|+|||||||+|+|.|++|+..++
T Consensus 71 r~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~~kvGD~V~I~E~RPLSKtKrw~Vv~I~~~~~ 150 (158)
T 2zkq_q 71 RILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAG 150 (158)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCCEEEEECCSCSSSCC-CEEEEEEEC--
T ss_pred EEEEEEEEEccCCccEEEEEEEEEecCccceeeecceeEEEECCcccCcCCCCCEEEEEEccccCCcEEEEEEEEecCCC
Confidence 689999999999999999999999999999999999999999986 4 79999999999999999999999999997654
No 9
>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=2.4e-33 Score=207.43 Aligned_cols=79 Identities=25% Similarity=0.356 Sum_probs=52.0
Q ss_pred ceEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECC-CCCCCCCCEEEEeecccCCCceeEEEEEeecCCcc
Q 033970 2 KKMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDP-ENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNAS 80 (107)
Q Consensus 2 k~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe-~~~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~~~~ 80 (107)
++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+|||| .|+|++||+|+|+|||||||+|+|.|.+|++++..
T Consensus 70 ril~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~~~~~ 149 (161)
T 3iz6_P 70 RIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGST 149 (161)
T ss_dssp EECTTTCCEEEEEEEEEEECTTCCCCSSCEEEEEECCCSSSSCCEEEEECCCCCC-------------------------
T ss_pred EEEEEEEEeccCCCeEEEEEEEEEecCccceEEECceeEEEECCCCCcCCCCCEEEEEeccCCCCcEeEEEEEEEecCcc
Confidence 57899999999999999999999999999999999999999998 57999999999999999999999999999998654
No 10
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.03 E-value=27 Score=23.49 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=37.2
Q ss_pred eEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECCCC-----CCCCCCEEEEeecccCC-Cce
Q 033970 3 KMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPEN-----QFQVGDLVQLEKSRPIS-KTK 67 (107)
Q Consensus 3 ~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe~~-----~~~vGD~V~I~e~RPiS-K~K 67 (107)
...|+|+....+....|..+ --..++||-+.. -.+.||.|++.. .|.. +.|
T Consensus 16 e~~g~V~~~lgn~~f~V~l~-------------nG~~~la~i~GK~Rk~IwI~~GD~VlVe~-~~yd~~~k 72 (111)
T 2dgy_A 16 QQIVRVLRTPGNNLHEVETA-------------QGQRFLVSMPSKYRKNIWIKRGDFLIVDP-IEEGEKVK 72 (111)
T ss_dssp CEEEEEEECCSSSEEEEECT-------------TSCEEEEECCTTCCSCCCCCSSCEEEEEE-CSSCSSCC
T ss_pred eEEEEEEEeCCCCEEEEEeC-------------CCCEEEEEechhhcccEEEcCCCEEEEEe-cccCCcce
Confidence 46889998888887777765 236678888854 478999999885 4665 444
No 11
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=58.53 E-value=32 Score=22.85 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=36.1
Q ss_pred eEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECCCC-----CCCCCCEEEEeecccCC-Cce
Q 033970 3 KMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPEN-----QFQVGDLVQLEKSRPIS-KTK 67 (107)
Q Consensus 3 ~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe~~-----~~~vGD~V~I~e~RPiS-K~K 67 (107)
...|+|+....+....|..+ --..++||-+.. -.+.||.|++.. .|.. .+|
T Consensus 21 e~~g~V~~~lgn~~~~V~l~-------------nG~~~la~i~GKmRk~IwI~~GD~VlVe~-~~yd~~~K 77 (102)
T 1jt8_A 21 EILGIIEQMLGASRVRVRCL-------------DGKTRLGRIPGRLKNRIWVREGDVVIVKP-WEVQGDQK 77 (102)
T ss_dssp CEEEEEECSSCSSEEEEEEE-------------TTEEEEEECCHHHHHHHCCCSCEEEEECC-BCCTTSEE
T ss_pred EEEEEEEEEcCCCEEEEEEC-------------CCCEEEEEEcccceeeEEecCCCEEEEEe-ccCCCCce
Confidence 45788888777777777664 345678888754 488999998874 4665 555
No 12
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=52.33 E-value=54 Score=23.11 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=36.1
Q ss_pred eEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECCCC-----CCCCCCEEEEeecccCCCceeE
Q 033970 3 KMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPEN-----QFQVGDLVQLEKSRPISKTKSF 69 (107)
Q Consensus 3 ~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe~~-----~~~vGD~V~I~e~RPiSK~K~~ 69 (107)
...|+|+....+....|... --..++||-+.. -.+.||.|++.. .|...+|-=
T Consensus 32 e~~g~V~e~lgn~~f~V~l~-------------nG~~~La~I~GKmRk~IwI~~GD~VlVe~-~~yd~~KG~ 89 (143)
T 1d7q_A 32 QEYAQVIKMLGNGRLEAMCF-------------DGVKRLCHIRGKLRKKVWINTSDIILVGL-RDYQDNKAD 89 (143)
T ss_dssp EEEEEEEEECSSSEEEEEET-------------TTEEEEEECCSGGGGSCCCCTTCEEEEEC-SSSSSSCCE
T ss_pred EEEEEEEEEcCCCEEEEEeC-------------CCCEEEEEecccceeeEEecCCCEEEEee-ccCCCCeEE
Confidence 35677777666666666553 345677777743 478999999986 577777743
No 13
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=35.49 E-value=45 Score=22.73 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCCCCCEEEEeecccCCCceeEEEEEeecCCccc
Q 033970 48 QFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASK 81 (107)
Q Consensus 48 ~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~~~~~ 81 (107)
.++.||+|...-..|...-|.|.|.+|..-++..
T Consensus 90 ~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng~~ 123 (130)
T 1a62_A 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDK 123 (130)
T ss_dssp TCCTTCEEEEEEECCCTTCCSEEEEEEEEETTBC
T ss_pred CCCCCCEEEEEEeCCCCCCcccceeEEEeECCCC
Confidence 7899999999988899999999999997665543
No 14
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=34.47 E-value=23 Score=23.09 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=13.1
Q ss_pred ECCCCCCCCCCEEEEeec
Q 033970 43 HDPENQFQVGDLVQLEKS 60 (107)
Q Consensus 43 HDe~~~~~vGD~V~I~e~ 60 (107)
.|+...+.+||+|+|.-.
T Consensus 36 ~~~~~~~~vGD~VLVH~G 53 (90)
T 2ot2_A 36 CDENGQPRVGQWVLVHVG 53 (90)
T ss_dssp BCTTSCBCTTCEEEEETT
T ss_pred cCCCCCCCCCCEEEEecC
Confidence 344446889999999754
No 15
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=25.22 E-value=61 Score=19.47 Aligned_cols=51 Identities=27% Similarity=0.344 Sum_probs=28.4
Q ss_pred eEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECCCC------CCCCCCEEEEeecccCCCce
Q 033970 3 KMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPEN------QFQVGDLVQLEKSRPISKTK 67 (107)
Q Consensus 3 ~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe~~------~~~vGD~V~I~e~RPiSK~K 67 (107)
++.|+|+....+.-..|..+- -..+.+|-+.. -..+||.|.+.. .|....+
T Consensus 7 ~~~G~Vi~~lg~~~y~V~~~~-------------g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~-~~~~~~k 63 (71)
T 1ah9_A 7 EMQGTVLETLPNTMFRVELEN-------------GHVVTAHISGKMRKNYIRILTGDKVTVEL-TPYDLSK 63 (71)
T ss_dssp ECCEEEEEECSSSEEEEEETT-------------SCEEEEEECSSGGGTTCCCCTTCEECCEE-CSSCTTE
T ss_pred EEEEEEEEEeCCcEEEEEECC-------------CCEEEEEEcceEeccCccCCCCCEEEEEE-ecCCCCE
Confidence 346888877666666665421 12334444322 345999999874 3434433
No 16
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=23.71 E-value=1.2e+02 Score=18.64 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=25.0
Q ss_pred CCCCCCCCCCEEEEeecccCCCceeEEEEEeecCCcc
Q 033970 44 DPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNAS 80 (107)
Q Consensus 44 De~~~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~~~~ 80 (107)
+-.|...+||.+.|. .|--....|.|.++....+.
T Consensus 25 e~rN~f~~GD~iEi~--~P~g~~~~~~v~~m~d~~G~ 59 (89)
T 4he6_A 25 QQRNHFRPGDEVEFF--GPEIENFTQVIEKIWDEDGN 59 (89)
T ss_dssp EESSCBCTTCEEEEE--STTSCCEEEECCCEEETTSC
T ss_pred EEcCCcCCCCEEEEE--cCCCCcEEEEeHHeEcCCCC
Confidence 345778899999876 46666778888888754443
No 17
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=23.57 E-value=1.4e+02 Score=18.71 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=29.9
Q ss_pred eEEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECCC------CCCCCCCEEEEeecccCCCce
Q 033970 3 KMQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPE------NQFQVGDLVQLEKSRPISKTK 67 (107)
Q Consensus 3 ~l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe~------~~~~vGD~V~I~e~RPiSK~K 67 (107)
++.|+|+..-.+....|..+-- ..+++|-+. --..+||.|.+.. .|..-+|
T Consensus 15 e~~G~Vik~l~n~~f~V~l~nG-------------~~~~c~i~GK~Rk~~I~Il~GD~V~ve~-~~yd~~k 71 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELENG-------------HKVLAHISGKMRQHYIRILPEDRVVVEL-SPYDLSR 71 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETTS-------------CEEEEEECHHHHHTTCCCCTTCEEEEEE-ETTEEEE
T ss_pred EEEEEEEEEcCCCEEEEEeCCC-------------CEEEEEeCcceecCCccCCCCCEEEEEE-CccCCCc
Confidence 4678888766566666665421 134444441 1478999998865 3443333
No 18
>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O
Probab=23.50 E-value=1.1e+02 Score=20.53 Aligned_cols=16 Identities=44% Similarity=0.646 Sum_probs=12.3
Q ss_pred CCCCCCCCCEEEEeec
Q 033970 45 PENQFQVGDLVQLEKS 60 (107)
Q Consensus 45 e~~~~~vGD~V~I~e~ 60 (107)
+...+++||.|++...
T Consensus 59 ~~~~vKvGD~Vl~~kg 74 (111)
T 1g31_A 59 PEGFCEVGDLTSLPVG 74 (111)
T ss_dssp CTTSCCTTCEEEEEGG
T ss_pred ccccccCCCEEEECCC
Confidence 3456999999999663
No 19
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=23.47 E-value=52 Score=24.32 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=18.8
Q ss_pred EeeeeEEEECCC-CCCCCCCEEEEeec
Q 033970 35 RKKKKYQAHDPE-NQFQVGDLVQLEKS 60 (107)
Q Consensus 35 ~r~kk~~vHDe~-~~~~vGD~V~I~e~ 60 (107)
.|+-.+.++|+- +.|+.||.|.|--.
T Consensus 210 Prsi~v~l~~dLvd~~~PGDrV~vtGI 236 (268)
T 2vl6_A 210 PRQLEIILEDDLVDSARPGDRVKVTGI 236 (268)
T ss_dssp CCEEEEEEEGGGTTSSCTTCEEEEEEE
T ss_pred CcEEEEEEccCccCcccCCCEEEEEEE
Confidence 466667777764 48999999986543
No 20
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=22.81 E-value=64 Score=22.51 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=42.1
Q ss_pred EEEEEEeCCCC-CeEEEEEeEEEeccccceE-------------EEeeeeEEEECC-----CCCCCCCCEEEEeecc-cC
Q 033970 4 MQGRVVCASSD-KTVAVEVVRLDPHPKYKRR-------------IRKKKKYQAHDP-----ENQFQVGDLVQLEKSR-PI 63 (107)
Q Consensus 4 l~G~VVs~km~-KTvvV~V~r~~~hpky~K~-------------~~r~kk~~vHDe-----~~~~~vGD~V~I~e~R-Pi 63 (107)
++|.|+....+ ..+.+-|.-+-.||.+..+ -+.+-.+..-|| .+.+++||.|+|.-.| ++
T Consensus 19 l~~qVv~~~~~~~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~ 98 (143)
T 4hik_A 19 FYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKI 98 (143)
T ss_dssp EEEEEEEEEECSSCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEEcCCCeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcHHHHHHhhCCCCCEEEEEeEEEee
Confidence 56777765322 6788888877777766543 234556777676 3459999999999985 44
Q ss_pred CC
Q 033970 64 SK 65 (107)
Q Consensus 64 SK 65 (107)
++
T Consensus 99 ~~ 100 (143)
T 4hik_A 99 DH 100 (143)
T ss_dssp CT
T ss_pred cC
Confidence 44
No 21
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=22.10 E-value=48 Score=24.83 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=18.8
Q ss_pred EeeeeEEEECCC-CCCCCCCEEEEeec
Q 033970 35 RKKKKYQAHDPE-NQFQVGDLVQLEKS 60 (107)
Q Consensus 35 ~r~kk~~vHDe~-~~~~vGD~V~I~e~ 60 (107)
.|+-.+.++|+- +.|++||.|.|--.
T Consensus 197 Prsi~V~l~~dLvd~~~PGDrV~vtGI 223 (279)
T 1ltl_A 197 PRQITVVLEDDLVDTLTPGDIVRVTGT 223 (279)
T ss_dssp CCEEEEEEEGGGTTCCCTTCEEEEEEE
T ss_pred CeEEEEEEcccccCccCCCCEEEEEEE
Confidence 356666666664 48999999987654
No 22
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=21.39 E-value=1.5e+02 Score=19.03 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=31.1
Q ss_pred eEEEEEEeCCCCCeEEEEEe------EEEeccccceEE---EeeeeEEEECCCCCCCCCCEEEEeeccc
Q 033970 3 KMQGRVVCASSDKTVAVEVV------RLDPHPKYKRRI---RKKKKYQAHDPENQFQVGDLVQLEKSRP 62 (107)
Q Consensus 3 ~l~G~VVs~km~KTvvV~V~------r~~~hpky~K~~---~r~kk~~vHDe~~~~~vGD~V~I~e~RP 62 (107)
.++|.|++......+.+..- ...+|..+..++ .-.-.+.+-++.-.++.||.+.|-...|
T Consensus 26 ~~~g~v~s~~~~~~~~~~~~~~~pG~~~~~H~~~~E~~~Vl~G~~~~~~~g~~~~l~~GD~v~ip~g~~ 94 (119)
T 3lwc_A 26 ISVGNLVDERHGGPITIGYGRYAPGQSLTETMAVDDVMIVLEGRLSVSTDGETVTAGPGEIVYMPKGET 94 (119)
T ss_dssp EEEEEC------CCCEEEEEEECTTCEEEEECSSEEEEEEEEEEEEEEETTEEEEECTTCEEEECTTCE
T ss_pred EEEEEeecCCCCCCEEEEEEEECCCCCcCccCCCCEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCE
Confidence 57888887644444333332 235564333332 3334445544445899999999987655
No 23
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=20.98 E-value=1.9e+02 Score=19.16 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=33.4
Q ss_pred EEEEEEeCCCCCeEEEEEeEEEeccccceEEEeeeeEEEECCCC-----CCCCCCEEEEeecccCCCceeEEEEEeecCC
Q 033970 4 MQGRVVCASSDKTVAVEVVRLDPHPKYKRRIRKKKKYQAHDPEN-----QFQVGDLVQLEKSRPISKTKSFIAVAMPPRN 78 (107)
Q Consensus 4 l~G~VVs~km~KTvvV~V~r~~~hpky~K~~~r~kk~~vHDe~~-----~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~~ 78 (107)
+.|+|+....+....|..+ .-..+++|-+.. -..+||.|++.. .|....+- .+..+..+.
T Consensus 34 ~~G~Vi~~lgn~~y~V~~~-------------dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~-~~~~~~kG-~I~~~~~r~ 98 (117)
T 2oqk_A 34 EYGQVQRMLGNGRLDAYCF-------------DGQKRLCHIRGKMRKKVWVNPGDIVLVSL-RDFQDSKG-DIILKYTPD 98 (117)
T ss_dssp EEEEEEEEEETTEEEEEET-------------TSCEEEEECCHHHHHHSCCCTTCEEEEEE-CTTCTTEE-EEEEECCHH
T ss_pred EEEEEEEEcCCCEEEEEeC-------------CCCEEEEEEcCceecCCcCCCCCEEEEEE-EcCCCCeE-EEEEEechH
Confidence 4566666554454444332 124456666532 355999999874 45555544 455555543
No 24
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=20.49 E-value=57 Score=20.42 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=16.3
Q ss_pred EEEECCCCCCCCCCEEEEeecc
Q 033970 40 YQAHDPENQFQVGDLVQLEKSR 61 (107)
Q Consensus 40 ~~vHDe~~~~~vGD~V~I~e~R 61 (107)
++...-..-+++||++.+.||-
T Consensus 39 ~i~RnVkGPVR~GDIl~L~EtE 60 (67)
T 3u5c_c 39 TIVRNVKGPVRENDILVLMESE 60 (67)
T ss_dssp EEEEECSSCCCTTCEEEESSSS
T ss_pred EEEecccCCcccCCEEEEehhh
Confidence 3444445579999999999983
No 25
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=20.02 E-value=54 Score=21.11 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=23.2
Q ss_pred eeeeEEEECCCCCCCCCCEEEEeecccCCCceeEEEEEeecC
Q 033970 36 KKKKYQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPR 77 (107)
Q Consensus 36 r~kk~~vHDe~~~~~vGD~V~I~e~RPiSK~K~~~V~~Iv~~ 77 (107)
-.|++.+---....++||++.+.|..+=.-+-+-...+|.+-
T Consensus 25 G~Kt~EiR~nDr~~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i 66 (83)
T 3iuw_A 25 RRKTFEIRKNDRNFQVGDILILEEYMNGMYLDDECEAEVIYI 66 (83)
T ss_dssp TSCCEEEEECCSCCCTTCEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CCcEEEEEecccCCCCCCEEEEEEccCCCccCcEEEEEEEEE
Confidence 344444433233599999999999843111233344455544
Done!