BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033973
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFGSSKDR-NDPFAFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRITPMV 84
GWDEGV GM+VG V RL I P +
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPPQL 183
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRITPMV 84
GWDEGV GM+VG V RL I P +
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPPQL 183
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRITPMV 84
GWDEGV GM+VG V RL I P +
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPPQL 183
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans
Isomerase With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans
Isomerase With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 9 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGHVIK 64
Query: 62 GWDEGVMGMQVGEVARLRITPMV 84
GWDEGV GM+VG V RL I P +
Sbjct: 65 GWDEGVQGMKVGGVRRLTIPPQL 87
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRITPMV 84
GWDEGV GM+VG V RL I P +
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPPQL 183
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFEFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRITPMV 84
GWDEGV GM+VG V RL I P +
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPPQL 183
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans
Isomerase With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans
Isomerase With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 9 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 64
Query: 62 GWDEGVMGMQVGEVARLRITPMV 84
GWDEGV GM+VG V RL I P +
Sbjct: 65 GWDEGVQGMKVGGVRRLTIPPQL 87
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 29 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 84
Query: 62 GWDEGVMGMQVGEVARLRITPMV 84
GWDEGV GM+VG V RL I P +
Sbjct: 85 GWDEGVQGMKVGGVRRLTIPPQL 107
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 13 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 68
Query: 62 GWDEGVMGMQVGEVARLRITPMV 84
GWDEGV GM+VG V RL I P +
Sbjct: 69 GWDEGVQGMKVGGVRRLTIPPQL 91
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 3 IEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
+EK++LTPG+G KP AG+KVTVH G +G ++F S++ G+ PF F +G G VIK
Sbjct: 26 LEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDG---KQFDSSRSRGK-PFQFTLGAGEVIK 81
Query: 62 GWDEGVMGMQVGEVARLRI 80
GWD+GV M +GE A I
Sbjct: 82 GWDQGVATMTLGEKALFTI 100
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And
Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 1 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSV 59
MG++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK V
Sbjct: 2 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEV 57
Query: 60 IKGWDEGVMGMQVGEVARLRITP 82
I+GW+EGV M VG+ A+L I+P
Sbjct: 58 IRGWEEGVAQMSVGQRAKLTISP 80
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P AGQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
+GW+EGV M VG+ A+L I+P
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISP 78
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDK-NKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
+GW+EGV M VG+ A+L I+P
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISP 78
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex
With Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex
With Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of
The Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of
The Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And
Receptor For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And
Receptor For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And
Receptor For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin
Complexed With Fkbp12: Is The Cyclohexyl Moiety Part Of
The Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin
Complex Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
+GW+EGV M VG+ A+L I+P
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISP 78
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 5/84 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+E + ++PG+G P GQ VH TG +NG +KF S++D +PF F+IGK VI
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNG---KKFDSSRD-RNKPFKFRIGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRITPMV 84
KG++EG M +G+ A+L TP V
Sbjct: 57 KGFEEGAAQMSLGQRAKLTCTPDV 80
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFVLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
+GW+EGV M VG+ A+L I+P
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISP 78
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
+GW EGV M VG+ A+L I+P
Sbjct: 57 RGWQEGVAQMSVGQRAKLTISP 78
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
+GW EGV M VG+ A+L I+P
Sbjct: 57 RGWAEGVAQMSVGQRAKLTISP 78
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin
Fkbp- 12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of
High-Affinity Fkbp Ligands, And The X-Ray Crystal
Structures Of Their Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of
High-Affinity Fkbp Ligands, And The X-Ray Crystal
Structures Of Their Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of
High-Affinity Fkbp Ligands, And The X-Ray Crystal
Structures Of Their Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of
High-Affinity Fkbp Ligands, And The X-Ray Crystal
Structures Of Their Complexes With Fkbp12
Length = 107
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 5/81 (6%)
Query: 3 IEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI+
Sbjct: 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVIR 57
Query: 62 GWDEGVMGMQVGEVARLRITP 82
GW+EGV M VG+ A+L I+P
Sbjct: 58 GWEEGVAQMSVGQRAKLTISP 78
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +K S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKMDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
+GW+EGV M VG+ A+L I+P
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISP 78
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With
Rapamycin
Length = 107
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
+G++EGV M VG+ A+L I+P
Sbjct: 57 RGFEEGVAQMSVGQRAKLTISP 78
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic
Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic
Ligand
Length = 107
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +K S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKVDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
+GW+EGV M VG+ A+L I+P
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISP 78
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 58.9 bits (141), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 32 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 87
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
K WD GV M+ GE+ L P
Sbjct: 88 KAWDIGVATMKRGEICHLLCKP 109
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With
Rapamycin
Length = 107
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
+G +EGV M VG+ A+L I+P
Sbjct: 57 RGLEEGVAQMSVGQRAKLTISP 78
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 1 MGIEKQILTPGN-GPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSV 59
MG++ L G+ P AGQ VH TG +G + F S++ G+ PF F +G+G V
Sbjct: 1 MGVQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKV---FDSSRTRGK-PFRFTVGRGEV 56
Query: 60 IKGWDEGVMGMQVGEVARLRITP 82
I+GWDEGV M VG+ A+L +P
Sbjct: 57 IRGWDEGVAQMSVGQRAKLVCSP 79
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type
Peptidylprolyl Isomerase
Length = 135
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 2 GIEKQILTPGNGP-KPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G KP G V VH G +NG KF S++D G Q F+F +G+G+VI
Sbjct: 15 GVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENG---TKFDSSRDRGDQ-FSFNLGRGNVI 70
Query: 61 KGWDEGVMGMQVGEVARLRI 80
KGWD GV M GEVA I
Sbjct: 71 KGWDLGVATMTKGEVAEFTI 90
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + G+G + P+ G +V VH G NG +KF S+ D +PF F IGKG VI
Sbjct: 32 GVLKIVKRVGHGEETPMIGDRVYVHYNGKLANG---KKFDSSHDR-NEPFVFSIGKGQVI 87
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
K WD GV M+ GE+ L P
Sbjct: 88 KAWDIGVATMKKGEICHLLCKP 109
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 8 LTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEG 66
++PG+G P G VT+H TG +NG QKF S+ D G PF IG G VIKGWD G
Sbjct: 13 ISPGDGATFPKTGDLVTIHYTGTLENG---QKFDSSVDRGS-PFQCNIGVGQVIKGWDVG 68
Query: 67 VMGMQVGEVARLRI 80
+ + VGE ARL I
Sbjct: 69 IPKLSVGEKARLTI 82
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 91
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
K WD GV M+ GE+ L P
Sbjct: 92 KAWDIGVATMKKGEICHLLCKP 113
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 20 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 75
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
K WD GV M+ GE+ L P
Sbjct: 76 KAWDIGVATMKKGEICHLLCKP 97
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 91
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
K WD GV M+ GE+ L P
Sbjct: 92 KAWDIGVATMKKGEICHLLCKP 113
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of
Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51
With 2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-
Yl]carbonyl}oxy)propyl]phenoxy}acetic Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-
Yl]carbonyl}oxy)propyl]phenoxy}acetic Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51
With 2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 20 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 75
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
K WD GV M+ GE+ L P
Sbjct: 76 KAWDIGVATMKKGEICHLLCKP 97
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 91
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
K WD GV M+ GE+ L P
Sbjct: 92 KAWDIGVATMKKGEICHLLCKP 113
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G + P+ G +V VH TG+ +G KF S+ D + F+F +GKG VI
Sbjct: 31 GVLKVIKREGTGTETPMIGDRVFVHYTGWLLDG---TKFDSSLD-RKDKFSFDLGKGEVI 86
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
K WD V M+VGE+ R+ P
Sbjct: 87 KAWDIAVATMKVGELCRITCKP 108
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G + P+ G +V VH TG+ +G KF S+ D + F+F +GKG VI
Sbjct: 32 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG---TKFDSSLD-RKDKFSFDLGKGEVI 87
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
K WD + M+VGEV + P
Sbjct: 88 KAWDIAIATMKVGEVCHITCKP 109
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G + P+ G +V VH TG+ +G KF S+ D + F+F +GKG VI
Sbjct: 36 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG---TKFDSSLD-RKDKFSFDLGKGEVI 91
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
K WD + M+VGEV + P
Sbjct: 92 KAWDIAIATMKVGEVCHITCKP 113
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G + P+ G +V VH TG+ +G KF S+ D + F+F +GKG VI
Sbjct: 52 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG---TKFDSSLD-RKDKFSFDLGKGEVI 107
Query: 61 KGWDEGVMGMQVGEVARLRITP 82
K WD + M+VGEV + P
Sbjct: 108 KAWDIAIATMKVGEVCHITCKP 129
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 16 PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEV 75
P G +V VH TG +G +KF S++D F F++G+G VIKGWD+G+ M+ GE
Sbjct: 27 PEVGDEVEVHYTGTLLDG---KKFDSSRDR-DDTFKFKLGQGQVIKGWDQGIKTMKKGEN 82
Query: 76 ARLRITP 82
A I P
Sbjct: 83 ALFTIPP 89
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 3 IEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
I K++L G +P G VTV TG ++G + F Q+PF F+ + +VI+
Sbjct: 246 ILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTV---FLKKGHDEQEPFEFKTDEEAVIE 302
Query: 62 GWDEGVMGMQVGEVARLRITP 82
G D V+ M+ GEVA + I P
Sbjct: 303 GLDRAVLNMKKGEVALVTIPP 323
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 16 PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEV 75
P G +V VH TG +G +KF S++D F F++G+G VIKGWD+G+ M+ GE
Sbjct: 43 PEVGDEVEVHYTGTLLDG---KKFDSSRDR-DDTFKFKLGQGQVIKGWDQGIKTMKKGEN 98
Query: 76 ARLRITP 82
A I P
Sbjct: 99 ALFTIPP 105
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 3 IEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
I K++L G +P G VTV TG ++G + F Q+PF F+ + +VI+
Sbjct: 262 ILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTV---FLKKGHDEQEPFEFKTDEEAVIE 318
Query: 62 GWDEGVMGMQVGEVARLRITP 82
G D V+ M+ GEVA + I P
Sbjct: 319 GLDRAVLNMKKGEVALVTIPP 339
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 11 GNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMG- 69
G GP+ V GQ + H G +NG + F S+ + G+ P TF+IG G VIKGWD+G++G
Sbjct: 22 GYGPEAVKGQLIKAHYVGKLENGKV---FDSSYNRGK-PLTFRIGVGEVIKGWDQGILGS 77
Query: 70 -----MQVGEVARLRITP 82
M G LRI P
Sbjct: 78 DGIPPMLTGGKRTLRIPP 95
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 24 VHC--TGYGKNG---DLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
VHC TG ++G D + + + K +P +F++G G VI+GWDE ++ M GE ARL
Sbjct: 23 VHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARL 82
Query: 79 RITP 82
I P
Sbjct: 83 EIEP 86
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 24 VHC--TGYGKNG---DLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
VHC TG +G D + + S K +P +F++G G VI+GWDE ++ M GE ARL
Sbjct: 26 VHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARL 85
Query: 79 RITP 82
I P
Sbjct: 86 EIEP 89
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 15 KPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGE 74
K G + +H TG ++G + + P QPF F +G G VIKGWD+G++GM GE
Sbjct: 5 KSRKGDVLHMHYTGKLEDG----TEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGE 60
Query: 75 VARLRI 80
+L I
Sbjct: 61 KRKLVI 66
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In
Complex With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In
Complex With Tetrapeptide Alpf
Length = 126
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 2 GIEKQILTPGNGPK---PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS 58
G+ K IL G G + P G +VTVH G ++ S K + + PF F +G+G
Sbjct: 16 GVVKTILRKGEGGEENAPKKGNEVTVHYVGKLES---SGKVFDSSRERNVPFKFHLGQGE 72
Query: 59 VIKGWDEGVMGMQVGEVARLRI 80
VIKGWD V M E +R+
Sbjct: 73 VIKGWDICVASMTKNEKCSVRL 94
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 2 GIEKQILTPGNGPK---PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS 58
G+ K IL G+ + P G +VTVH G ++ + K + + PF F + +G
Sbjct: 17 GVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES---TGKVFDSSFDRNVPFKFHLEQGE 73
Query: 59 VIKGWDEGVMGMQVGEVARLRITPM 83
VIKGWD V M+ E +RI M
Sbjct: 74 VIKGWDICVSSMRKNEKCLVRIESM 98
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of
Fkbp35 From Plasmodium Falciparum
Length = 135
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 2 GIEKQILTPGNGPK---PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS 58
G+ K IL G+ + P G +VTVH G ++ + K + + PF F + +G
Sbjct: 17 GVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES---TGKVFDSSFDRNVPFKFHLEQGE 73
Query: 59 VIKGWDEGVMGMQVGEVARLRITPM 83
VIKGWD V M+ E +RI M
Sbjct: 74 VIKGWDICVSSMRKNEKCLVRIESM 98
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 19 GQKVTVHCTGY-GKNGDLSQKFWST-KDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVA 76
G + VH GY K+G L F ST K QP F +G +KGWD+G+ GM VGE
Sbjct: 32 GDLMLVHYEGYLEKDGSL---FHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKR 88
Query: 77 RLRITPMV 84
+L I P +
Sbjct: 89 KLIIPPAL 96
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ +++ GNG KP VTV TG +G + F ST+ G +P TFQ+ + VI
Sbjct: 107 GLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTV---FDSTEKTG-KPATFQVSQ--VIP 160
Query: 62 GWDEGVMGMQVG 73
GW E + M G
Sbjct: 161 GWTEALQLMPAG 172
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ +++ GNG KP VTV TG +G + F ST+ G +P TFQ+ + VI
Sbjct: 31 GLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTV---FDSTEKTG-KPATFQVSQ--VIP 84
Query: 62 GWDEGVMGMQVGEVARLRI 80
GW E + M G + +
Sbjct: 85 GWTEALQLMPAGSTWEIYV 103
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 3 IEKQILTPG--NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
+ K+ L PG +PV GQ VTVH +NG Q+ + F +G VI
Sbjct: 13 LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE--------EPELVFTLGDCDVI 64
Query: 61 KGWDEGVMGMQVGEVA 76
+ D V M VGE A
Sbjct: 65 QALDLSVPLMDVGETA 80
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
GI LTPG GPKP A +V V G +G + D QP F++ SVI
Sbjct: 118 GILMTELTPGTGPKPDANGRVEVRYVGRLPDGKIF-------DQSTQPQWFRL--DSVIS 168
Query: 62 GWDEGVMGMQVGEVARLRI 80
GW + M G RL I
Sbjct: 169 GWTSALQNMPTGAKWRLVI 187
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human
Fk506-Binding Protein 8
Length = 118
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 3 IEKQILTPG--NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
+ K+ L PG +PV GQ VTVH +NG Q+ + F +G VI
Sbjct: 15 LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE--------EPELVFTLGDCDVI 66
Query: 61 KGWDEGVMGMQVGEVA 76
+ D V M VGE A
Sbjct: 67 QALDLSVPLMDVGETA 82
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 3 IEKQILTPG--NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
+ K+ L PG +PV GQ VTVH +NG Q+ + F +G VI
Sbjct: 45 LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE--------EPELVFTLGDCDVI 96
Query: 61 KGWDEGVMGMQVGEVA 76
+ D V M VGE A
Sbjct: 97 QALDLSVPLMDVGETA 112
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 3 IEKQILTPG--NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
+ K+ L PG +PV GQ VTVH +NG Q+ + F +G VI
Sbjct: 19 LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE--------EPELVFTLGDCDVI 70
Query: 61 KGWDEGVMGMQVGEVA 76
+ D V M VGE A
Sbjct: 71 QALDLSVPLMDVGETA 86
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 44 DPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRI 80
D +P F +G+G +I+G++E V+ M+VG+ ++I
Sbjct: 39 DREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKI 75
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 6 QILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWD 64
Q + G+G + P K VH TG ++G + F S+++ G+ P TF+ VIKGW
Sbjct: 42 QRIARGSGKRAPAIDDKCEVHYTGRLRDGTV---FDSSRERGK-PTTFR--PNEVIKGWT 95
Query: 65 EGVMGMQVGEVARLRI 80
E + M+ G+ RL I
Sbjct: 96 EALQLMREGDRWRLFI 111
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 32.3 bits (72), Expect = 0.073, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 3 IEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGK-GSVIK 61
+ KQI+ G+G KP +H + KN KF T QQP +GK +
Sbjct: 51 VSKQIIKEGHGSKPSKYSTCFLHYRAWTKNS--QHKFEDTWHE-QQPIELVLGKEKKELA 107
Query: 62 GWDEGVMGMQVGEVARLRI 80
G GV M+ GE A + +
Sbjct: 108 GLAIGVASMKSGERALVHV 126
>pdb|3T0V|A Chain A, Unliganded Fluorogen Activating Protein M8vl
pdb|3T0W|A Chain A, Fluorogen Activating Protein M8vl In Complex With
Dimethylindole Red
pdb|3T0W|B Chain B, Fluorogen Activating Protein M8vl In Complex With
Dimethylindole Red
Length = 123
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 7 ILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEG 66
+LT GQKVT+ C+G N + + +W + PG P G +
Sbjct: 3 VLTQSPSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDR 62
Query: 67 VMGMQVGEVARLRIT 81
G + G A L I+
Sbjct: 63 FSGSKSGTSASLAIS 77
>pdb|4D9L|L Chain L, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
pdb|4D9L|M Chain M, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
pdb|4D9L|N Chain N, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
pdb|4D9L|O Chain O, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
Length = 215
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 19 GQKVTVHCTGYGKN-GDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVAR 77
GQ+VT+ CTG N G W + PG P G + G + G + G A
Sbjct: 15 GQRVTISCTGSSSNIGAHYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSAS 74
Query: 78 LRIT 81
L IT
Sbjct: 75 LAIT 78
>pdb|3T0X|A Chain A, Fluorogen Activating Protein M8vla4(S55p) In Complex
With Dimethylindole Red
pdb|3T0X|B Chain B, Fluorogen Activating Protein M8vla4(S55p) In Complex
With Dimethylindole Red
Length = 123
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQKVT+ C+G N + + +W + PG P G + G + G A L
Sbjct: 15 GQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRPSGVPDRFSGSKSGTSASL 74
Query: 79 RIT 81
I+
Sbjct: 75 AIS 77
>pdb|3C2A|L Chain L, Antibody Fab Fragment 447-52d In Complex With Ug1033
Peptide
pdb|3C2A|M Chain M, Antibody Fab Fragment 447-52d In Complex With Ug1033
Peptide
pdb|3GHB|L Chain L, Crystal Structure Of Anti-Hiv-1 Fab 447-52d In Complex
With V3 Peptide W2rw020
pdb|3GHB|M Chain M, Crystal Structure Of Anti-Hiv-1 Fab 447-52d In Complex
With V3 Peptide W2rw020
Length = 216
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%)
Query: 5 KQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWD 64
+ +LT GQKVT+ C+G N + W + PG P G G
Sbjct: 1 QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVLWYQQFPGTAPKLLIYGNNKRPSGIP 60
Query: 65 EGVMGMQVGEVARLRIT 81
+ G + G A L IT
Sbjct: 61 DRFSGSKSGTSATLGIT 77
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 3 IEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGK-GSVIK 61
+ KQI+ G+G KP +H + KN KF T QQP +GK +
Sbjct: 51 VSKQIIKEGHGSKPSKYSTCFLHYRAWTKNS--QHKFEDTWHE-QQPIELVLGKEKKELA 107
Query: 62 GWDEGVMGMQVGEVARLRI 80
G GV M+ GE A + +
Sbjct: 108 GLAIGVASMKSGERALVHV 126
>pdb|1Q1J|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 Fab 447-52d In
Complex With V3 Peptide
pdb|1Q1J|M Chain M, Crystal Structure Analysis Of Anti-Hiv-1 Fab 447-52d In
Complex With V3 Peptide
Length = 215
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%)
Query: 5 KQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWD 64
+ +LT GQKVT+ C+G N + W + PG P G G
Sbjct: 1 QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVLWYQQFPGTAPKLLIYGNNKRPSGIP 60
Query: 65 EGVMGMQVGEVARLRIT 81
+ G + G A L IT
Sbjct: 61 DRFSGSKSGTSATLGIT 77
>pdb|3H42|L Chain L, Crystal Structure Of Pcsk9 In Complex With Fab From Ldlr
Competitive Antibody
Length = 217
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 19 GQKVTVHCTGYGKN-GDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVAR 77
GQ+VT+ CTG N G W + PG P G + G + G + G A
Sbjct: 15 GQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLISGNSNRPSGVPDRFSGSKSGTSAS 74
Query: 78 LRIT 81
L IT
Sbjct: 75 LAIT 78
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 46 GQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRITP 82
++P F IG +I G ++ V+ Q+GE + I P
Sbjct: 33 SKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAP 69
>pdb|3MLW|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 1006-15d In
Complex With An Mn V3 Peptide
pdb|3MLW|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 1006-15d In
Complex With An Mn V3 Peptide
Length = 215
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQ+VT+ C+G N + + +W + PG P G + G + G A L
Sbjct: 15 GQRVTISCSGNSSNIENNYVYWYQQLPGSTPKLLIFRDDQRPSGVPDRFSGSKSGTSASL 74
Query: 79 RIT 81
I+
Sbjct: 75 AIS 77
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 19 GQKVTVHCTGY--GKNGDLSQKFWSTKD----PGQQ--PFTFQIGKGSVIKGWDEGVMGM 70
G+ V + GY GK D + + + K+ P P G+G V+ G DE ++ M
Sbjct: 5 GKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEM 64
Query: 71 QVGEVARLRITP 82
VGE + + P
Sbjct: 65 DVGEEREVVLPP 76
>pdb|2A9M|L Chain L, Structural Analysis Of A Tight-Binding Fluorescein-Scfv;
Apo Form
pdb|2A9M|M Chain M, Structural Analysis Of A Tight-Binding Fluorescein-Scfv;
Apo Form
pdb|2A9N|L Chain L, A Mutation Designed To Alter Crystal Packing Permits
Structural Analysis Of A Tight-Binding Fluorescein-Scfv
Complex
pdb|2A9N|M Chain M, A Mutation Designed To Alter Crystal Packing Permits
Structural Analysis Of A Tight-Binding Fluorescein-Scfv
Complex
Length = 110
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 6 QILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDE 65
+LT + GQKVT+ C+G N + W + PG+ P G +
Sbjct: 1 SVLTQPSSVSAAPGQKVTISCSGSTSNIGNNYVSWYQQHPGKAPKLMIYDVSKRPSGVPD 60
Query: 66 GVMGMQVGEVARLRIT 81
G + G A L I+
Sbjct: 61 RFSGSKSGNSASLDIS 76
>pdb|4G6F|L Chain L, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|D Chain D, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 215
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 8 LTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGV 67
LT G G+ VT+ C G + W K PGQ P GK + G +
Sbjct: 4 LTQETGVSVALGRTVTITCRGDSLRSHYAS--WYQKKPGQAPILLFYGKNNRPSGVPDRF 61
Query: 68 MGMQVGEVARLRIT 81
G G A L I+
Sbjct: 62 SGSASGNRASLTIS 75
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 19 GQKVTVHCTGY--GKNGDLSQKFWSTKD----PGQQ--PFTFQIGKGSVIKGWDEGVMGM 70
G+ V + GY GK D + + + K+ P P G+G V+ G DE ++ M
Sbjct: 5 GKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEM 64
Query: 71 QVGEVARLRITP 82
VGE + + P
Sbjct: 65 DVGEEREVVLPP 76
>pdb|3LMJ|L Chain L, Structure Of Human Anti Hiv 21c Fab
pdb|3LQA|L Chain L, Crystal Structure Of Clade C Gp120 In Complex With Scd4
And
Length = 217
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 29/77 (37%)
Query: 5 KQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWD 64
+ +LT GQKVT+ C+G N + W + PG P G
Sbjct: 1 QSVLTQPPSVSAAPGQKVTISCSGSSSNIGKNYVSWYQQLPGAAPKLLIFDDTQRPSGIP 60
Query: 65 EGVMGMQVGEVARLRIT 81
+ G + G A L IT
Sbjct: 61 DRFSGSKSGTSATLAIT 77
>pdb|2JB5|L Chain L, Fab Fragment In Complex With Small Molecule Hapten,
Crystal Form-1
pdb|2JB6|A Chain A, Fab Fragment In Complex With Small Molecule Hapten,
Crystal Form-2
pdb|2JB6|L Chain L, Fab Fragment In Complex With Small Molecule Hapten,
Crystal Form-2
Length = 216
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 19 GQKVTVHCTGYGKN-GDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVAR 77
GQ +T+ CTG + G + W + PG+ P G + G G + G A
Sbjct: 15 GQSITISCTGTSSDVGSNNYVSWYQQHPGKAPKLMIYGGSNRPSGVSNRFSGSKSGNTAS 74
Query: 78 LRITPMVLVD 87
L I+ + D
Sbjct: 75 LTISGLQAED 84
>pdb|3MA9|L Chain L, Crystal Structure Of Gp41 Derived Protein Complexed With
Fab 8066
pdb|3MAC|L Chain L, Crystal Structure Of Gp41-Derived Protein Complexed With
Fab 8062
Length = 213
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 17 VAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVA 76
V GQ + C+G N W + PGQ P G + G E G G A
Sbjct: 13 VPGQTARISCSG--DNIPYEYASWYQQKPGQAPVLVIYGDNNRPSGIPERFSGSNSGNTA 70
Query: 77 RLRIT 81
L I+
Sbjct: 71 TLTIS 75
>pdb|1JVK|A Chain A, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1JVK|B Chain B, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1LGV|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LGV|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LHZ|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
pdb|1LHZ|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
Length = 216
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 19 GQKVTVHCTGYGK-NGDLSQKFWSTKDPGQQP--FTFQIGKGSVIKGWDEGVMGMQVGEV 75
GQ +TV CTG G + W + PG+ P T+++ K G + G + G
Sbjct: 15 GQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRP--SGVSDRFSGSKSGNS 72
Query: 76 ARLRIT 81
A L I+
Sbjct: 73 ASLTIS 78
>pdb|3P30|L Chain L, Crystal Structure Of The Cluster Ii Fab 1281 In Complex
With Hiv-1 Gp41 Ectodomain
Length = 213
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQ+VT+ C+G N + +W + PG P G + G + G A L
Sbjct: 15 GQRVTISCSGSSSNIGNNYVYWYQQLPGTAPKLLIYKNNIRPSGVPDRFSGSKSGTSASL 74
Query: 79 RIT 81
I+
Sbjct: 75 AIS 77
>pdb|3KDM|L Chain L, Crystal Structure Of Human Anti-Steroid Fab 5f2 In
Complex With Testosterone
pdb|3KDM|A Chain A, Crystal Structure Of Human Anti-Steroid Fab 5f2 In
Complex With Testosterone
Length = 218
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 19 GQKVTVHCTGYGKN-GDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVAR 77
GQ +T+ CTG + G + W + PG+ P G + G G + G A
Sbjct: 15 GQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYGVTNRPSGVSNRFSGSKSGNTAS 74
Query: 78 LRITPMVL---VDFHNGGFNLTQS 98
L I+ + D++ + T++
Sbjct: 75 LTISGLQAGDEADYYCSSYTSTRT 98
>pdb|2XQB|L Chain L, Crystal Structure Of Anti-Il-15 Antibody In Complex With
Human Il-15
Length = 211
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQ+VT+ C+G N + +W + PG P G + G + G A L
Sbjct: 11 GQRVTISCSGSTSNLKRNYVYWYQQLPGTAPKLLIYRDRRRPSGVPDRFSGSKSGTSASL 70
Query: 79 RIT 81
I+
Sbjct: 71 AIS 73
>pdb|4EVN|B Chain B, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|D Chain D, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|F Chain F, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|H Chain H, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|J Chain J, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|L Chain L, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|N Chain N, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|P Chain P, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
Length = 217
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 29/77 (37%)
Query: 5 KQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWD 64
+ +LT GQKVT+ C+G N + W + PG P G
Sbjct: 1 QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIP 60
Query: 65 EGVMGMQVGEVARLRIT 81
+ G + G A L IT
Sbjct: 61 DRFSGSKSGTSATLGIT 77
>pdb|2XZA|L Chain L, Crystal Structure Of Recombinant A.17 Antibody Fab
Fragment
pdb|2XZC|L Chain L, Crystal Structure Of Phosphonate-Modified Recombinant
A.17 Antibody Fab Fragment
Length = 216
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 28/75 (37%)
Query: 7 ILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEG 66
+LT GQKVT+ C+G N + W + PG P G +
Sbjct: 3 VLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDR 62
Query: 67 VMGMQVGEVARLRIT 81
G + G A L IT
Sbjct: 63 FSGSKSGTSATLGIT 77
>pdb|3SE9|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc- Pg04 In Complex With Hiv-1 Gp120
pdb|4I3R|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P3221
pdb|4I3S|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P21
Length = 208
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
G+ ++ CT G ++ W K PGQ P G + G Q G+ L
Sbjct: 16 GETASLSCTA-ASYGHMT---WYQKKPGQPPKLLIFATSKRASGIPDRFSGSQFGKQYTL 71
Query: 79 RITPMVLVDF 88
IT M DF
Sbjct: 72 TITRMEPEDF 81
>pdb|1AQK|L Chain L, Three-Dimensional Structure Of A Human Fab With High
Affinity For Tetanus Toxoid
Length = 216
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 19 GQKVTVHCTGYGKNGDLSQKF---WSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEV 75
GQ+VT+ CT G N ++ F W PG P + G + G + G
Sbjct: 15 GQRVTISCT--GSNSNIGAGFTVHWYQHLPGTAPKLLIFANTNRPSGVPDRFSGSKSGTS 72
Query: 76 ARLRIT 81
A L IT
Sbjct: 73 ASLAIT 78
>pdb|3HTX|A Chain A, Crystal Structure Of Small Rna Methyltransferase Hen1
pdb|3HTX|D Chain D, Crystal Structure Of Small Rna Methyltransferase Hen1
Length = 950
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 52 FQIGKGSVIKGWDEGVMGMQVGEVARLRITP 82
F++G GS+ + V M VGE A ++TP
Sbjct: 621 FEVGTGSMNPHIESEVTQMTVGEYASFKMTP 651
>pdb|1RZF|L Chain L, Crystal Structure Of Human Anti-hiv-1 Gp120-reactive
Antibody E51
Length = 213
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 5 KQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWD 64
+ ILT GQKVT+ C+G N + W + PG P G
Sbjct: 1 QSILTQPPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIP 60
Query: 65 EGVMGMQVGEVARLRITPMVL---VDFHNGGFNLTQSWIL 101
+ G + G A L IT + D++ G ++ + S ++
Sbjct: 61 DRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAVV 100
>pdb|3GBM|L Chain L, Crystal Structure Of Fab Cr6261 In Complex With A H5n1
Influenza Virus Hemagglutinin.
pdb|3GBM|M Chain M, Crystal Structure Of Fab Cr6261 In Complex With A H5n1
Influenza Virus Hemagglutinin.
pdb|3GBN|L Chain L, Crystal Structure Of Fab Cr6261 In Complex With The 1918
H1n1 Influenza Virus Hemagglutinin
Length = 221
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 27/72 (37%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQKVT+ C+G N W + PG P G + G + G A L
Sbjct: 15 GQKVTISCSGSSSNIGNDYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATL 74
Query: 79 RITPMVLVDFHN 90
IT + D N
Sbjct: 75 GITGLQTGDEAN 86
>pdb|3D69|L Chain L, Crystal Structure Of The Fab Fragment Of An Anti-Factor
Ix Antibody 10c12
pdb|3D69|A Chain A, Crystal Structure Of The Fab Fragment Of An Anti-Factor
Ix Antibody 10c12
Length = 216
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%)
Query: 5 KQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWD 64
+ +LT GQKVT+ C+G N + W + PG+ P G
Sbjct: 1 QSVLTQPPSVSAAPGQKVTISCSGSTSNIGNNYVSWYQQHPGKAPKLMIYDVSKRPSGVP 60
Query: 65 EGVMGMQVGEVARLRIT 81
+ G + G A L I+
Sbjct: 61 DRFSGSKSGNSASLDIS 77
>pdb|1NL0|L Chain L, Crystal Structure Of Human Factor Ix Gla Domain In
Complex Of An Inhibitory Antibody, 10c12
Length = 213
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%)
Query: 5 KQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWD 64
+ +LT GQKVT+ C+G N + W + PG+ P G
Sbjct: 1 QSVLTQPPSVSAAPGQKVTISCSGSTSNIGNNYVSWYQQHPGKAPKLMIYDVSKRPSGVP 60
Query: 65 EGVMGMQVGEVARLRIT 81
+ G + G A L I+
Sbjct: 61 DRFSGSKSGNSASLDIS 77
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRITPMVLVDFHNGGFNLTQSWILRYKSCR 107
++ + +IK + E + E + R P V+VD NG +LT ++LR C+
Sbjct: 147 EVRREDIIKPYIEAIKSKVDVEAIKKR-KPFVVVDTSNGAGSLTLPYLLRELGCK 200
>pdb|4FQK|F Chain F, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059
COMPLEX
pdb|4FQK|L Chain L, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059
COMPLEX
Length = 216
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ C+G N + +W + PG P
Sbjct: 15 GQRVTISCSGSSSNIGTNYVYWYQQFPGTAP 45
>pdb|4FQJ|L Chain L, Influenza BFLORIDA42006 HEMAGGLUTININ FAB CR8071 COMPLEX
Length = 216
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ C+G N + +W + PG P
Sbjct: 15 GQRVTISCSGSSSNIGTNYVYWYQQFPGTAP 45
>pdb|3MLY|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With A Ur29 V3 Peptide
pdb|3MLY|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With A Ur29 V3 Peptide
pdb|3MLZ|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With A Vi191 V3 Peptide
Length = 214
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 28/76 (36%)
Query: 5 KQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWD 64
+ +LT GQKVT+ C+G N + W + PG P G
Sbjct: 1 QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNMVSWYQQHPGTAPKLLIYENSKRPSGIP 60
Query: 65 EGVMGMQVGEVARLRI 80
+ G + G A L I
Sbjct: 61 DRFSGSRSGTSATLGI 76
>pdb|3MLX|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With An Mn V3 Peptide
pdb|3MLX|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With An Mn V3 Peptide
Length = 211
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 24/62 (38%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQKVT+ C+G N + W + PG P G + G + G A L
Sbjct: 14 GQKVTISCSGSSSNIGNNMVSWYQQHPGTAPKLLIYENSKRPSGIPDRFSGSRSGTSATL 73
Query: 79 RI 80
I
Sbjct: 74 GI 75
>pdb|2RHE|A Chain A, Structure Of A Novel Bence-Jones Protein (Rhe) Fragment
At 1.6 Angstroms Resolution
Length = 114
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 5 KQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWD 64
+ +LT GQ+VT+ CTG + + W + PG+ P + G
Sbjct: 1 ESVLTQPPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVS 60
Query: 65 EGVMGMQVGEVARLRIT 81
+ + G A L I+
Sbjct: 61 DRFSASKSGTSASLAIS 77
>pdb|1W26|A Chain A, Trigger Factor In Complex With The Ribosome Forms A
Molecular Cradle For Nascent Proteins
pdb|1W26|B Chain B, Trigger Factor In Complex With The Ribosome Forms A
Molecular Cradle For Nascent Proteins
pdb|2VRH|A Chain A, Structure Of The E. Coli Trigger Factor Bound To A
Translating Ribosome
Length = 432
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 50 FTFQIGKGSVIKGWDEGVMGMQVGEVARLRIT 81
F G+G I G+++G+ G + GE + +T
Sbjct: 185 FVLAXGQGRXIPGFEDGIKGHKAGEEFTIDVT 216
>pdb|1L1P|A Chain A, Solution Structure Of The Ppiase Domain From E. Coli
Trigger Factor
Length = 106
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 50 FTFQIGKGSVIKGWDEGVMGMQVGEVARLRIT 81
F +G+G +I G+++G+ G + GE + +T
Sbjct: 42 FVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVT 73
>pdb|3MLV|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With An Nof V3 Peptide
pdb|3MLV|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With An Nof V3 Peptide
Length = 219
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 19 GQKVTVHCTGYGKNGDLSQKF--WSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVA 76
GQ ++ C+G L K+ W + PGQ P G E + G + G+ A
Sbjct: 15 GQTASISCSG----DKLDDKYVSWYYQRPGQSPVLLMYQDFKRPSGIPERLSGSKSGKTA 70
Query: 77 RLRIT 81
L I+
Sbjct: 71 TLTIS 75
>pdb|2FB4|L Chain L, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
pdb|2IG2|L Chain L, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 216
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ C+G N S W + PG P
Sbjct: 15 GQRVTISCSGTSSNIGSSTVNWYQQLPGMAP 45
>pdb|3MLU|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With A Zam18 V3 Peptide
Length = 218
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 19 GQKVTVHCTGYGKNGDLSQKF--WSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVA 76
GQ ++ C+G L K+ W + PGQ P G E + G + G+ A
Sbjct: 14 GQTASISCSG----DKLDDKYVSWYYQRPGQSPVLLMYQDFKRPSGIPERLSGSKSGKTA 69
Query: 77 RLRIT 81
L I+
Sbjct: 70 TLTIS 74
>pdb|1ZVO|A Chain A, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
pdb|1ZVO|B Chain B, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
Length = 214
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 24/63 (38%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQ+VT+ C G N +W + PG P G + G + G A L
Sbjct: 15 GQRVTISCFGSSSNIGRYYVYWYQQLPGTTPKLLIYKDNQRPSGVPDRFSGSKSGTSASL 74
Query: 79 RIT 81
I+
Sbjct: 75 AIS 77
>pdb|3MLR|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With A Ny5 V3 Peptide
pdb|3MLS|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Mab 2557 Fab In
Complex With A Hiv- 1 Gp120 V3 Mimotope
pdb|3MLS|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Mab 2557 Fab In
Complex With A Hiv- 1 Gp120 V3 Mimotope
pdb|3MLS|N Chain N, Crystal Structure Of Anti-Hiv-1 V3 Mab 2557 Fab In
Complex With A Hiv- 1 Gp120 V3 Mimotope
pdb|3MLS|O Chain O, Crystal Structure Of Anti-Hiv-1 V3 Mab 2557 Fab In
Complex With A Hiv- 1 Gp120 V3 Mimotope
pdb|3MLT|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With A Ug1033 V3 Peptide
pdb|3MLT|A Chain A, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With A Ug1033 V3 Peptide
pdb|3MLT|D Chain D, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With A Ug1033 V3 Peptide
pdb|3MLT|G Chain G, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With A Ug1033 V3 Peptide
Length = 219
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 19 GQKVTVHCTGYGKNGDLSQKF--WSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVA 76
GQ ++ C+G L K+ W + PGQ P G E + G + G+ A
Sbjct: 15 GQTASISCSG----DKLDDKYVSWYYQRPGQSPVLLMYQDFKRPSGIPERLSGSKSGKTA 70
Query: 77 RLRIT 81
L I+
Sbjct: 71 TLTIS 75
>pdb|2B0S|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Mn Peptide
pdb|2B1A|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug1033 Peptide
pdb|2B1H|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug29 Peptide
Length = 215
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQ++++ C+G N + + +W PG P G + + G A L
Sbjct: 15 GQRISISCSGTSSNVENNYVYWYQHLPGTAPKLLIYRNDHRSSGIPDRFSASKSGTSASL 74
Query: 79 RIT 81
I+
Sbjct: 75 AIS 77
>pdb|1CD0|A Chain A, Structure Of Human Lamda-6 Light Chain Dimer Jto
pdb|1CD0|B Chain B, Structure Of Human Lamda-6 Light Chain Dimer Jto
Length = 111
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 12 NGPKPVA---GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFT 51
N P V+ G+ VT+ CT N D + W + PG P T
Sbjct: 5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPIT 47
>pdb|1PW3|A Chain A, Crystal Structure Of Jtor68s
pdb|1PW3|B Chain B, Crystal Structure Of Jtor68s
Length = 111
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 12 NGPKPVA---GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFT 51
N P V+ G+ VT+ CT N D + W + PG P T
Sbjct: 5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPIT 47
>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
Length = 165
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 2 GIEKQILTPGNGPKP--VAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSV 59
GI+K+++ G G P G K T H + D ++ G+ P IGK
Sbjct: 11 GIQKRVIQEGRGELPDFQDGTKATFHYRTLHSD-DEGTVLDDSRARGK-PMELIIGKKFK 68
Query: 60 IKGWDEGVMGMQVGEVARL 78
+ W+ V M+ GE+A+
Sbjct: 69 LPVWETIVCTMREGEIAQF 87
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
pdb|3NZP|B Chain B, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
Length = 619
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 14 PKPVAGQKVTVHCTGYG---KNGDLSQKF 39
PKP G +V +H G G K+G ++ KF
Sbjct: 176 PKPNIGLRVRLHSAGVGIWAKSGGINSKF 204
>pdb|3G04|A Chain A, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
Length = 216
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 14 PKPVAG---QKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGM 70
P V+G Q+VT+ C+G N + W + PG+ P + G + G
Sbjct: 7 PPSVSGAPRQRVTISCSGNSSNIGNNAVNWYQQLPGKAPKLLIYYDDQLPSGVSDRFSGS 66
Query: 71 QVGEVARLRI 80
+ G A L I
Sbjct: 67 RSGTSASLAI 76
>pdb|3TNN|L Chain L, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|B Chain B, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|D Chain D, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|F Chain F, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody
Length = 217
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 19 GQKVTVHCTGYGKN-GDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVAR 77
GQ +T+ CTG + G + W + PG+ P G G + G A
Sbjct: 15 GQSITISCTGTSSDVGSYNFVSWYQQHPGKAPKLMIYEVSERPSGISNRFSGSKSGNTAS 74
Query: 78 LRITPMVLVD 87
L I+ + D
Sbjct: 75 LTISGLQAED 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,838,305
Number of Sequences: 62578
Number of extensions: 156062
Number of successful extensions: 399
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 131
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)