Query 033974
Match_columns 107
No_of_seqs 151 out of 1007
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 8.2E-26 1.8E-30 172.5 7.7 70 32-101 2-71 (371)
2 KOG0713 Molecular chaperone (D 99.9 2E-24 4.4E-29 162.0 8.7 76 25-100 7-82 (336)
3 PRK14288 chaperone protein Dna 99.9 2.5E-22 5.4E-27 154.1 8.0 69 33-101 2-70 (369)
4 PRK14296 chaperone protein Dna 99.9 1.4E-21 3E-26 150.1 7.7 68 33-101 3-70 (372)
5 PRK14286 chaperone protein Dna 99.8 3.1E-21 6.7E-26 148.2 8.2 69 33-101 3-71 (372)
6 PRK14279 chaperone protein Dna 99.8 3.3E-21 7.2E-26 148.9 7.9 69 33-101 8-76 (392)
7 KOG0712 Molecular chaperone (D 99.8 5.5E-21 1.2E-25 144.5 7.1 65 33-100 3-67 (337)
8 KOG0716 Molecular chaperone (D 99.8 1E-20 2.3E-25 138.6 7.4 70 33-102 30-99 (279)
9 PRK14277 chaperone protein Dna 99.8 1.5E-20 3.2E-25 145.0 8.2 69 33-101 4-72 (386)
10 PF00226 DnaJ: DnaJ domain; I 99.8 3.6E-20 7.8E-25 109.5 7.7 62 35-96 1-63 (64)
11 PRK14294 chaperone protein Dna 99.8 2.1E-20 4.6E-25 143.3 8.5 69 33-101 3-71 (366)
12 PRK14285 chaperone protein Dna 99.8 1.5E-20 3.3E-25 144.1 7.4 68 34-101 3-70 (365)
13 PRK14283 chaperone protein Dna 99.8 1.9E-20 4.1E-25 144.1 7.8 69 32-101 3-71 (378)
14 PRK14282 chaperone protein Dna 99.8 1.9E-20 4.1E-25 143.7 7.8 69 33-101 3-72 (369)
15 PRK14287 chaperone protein Dna 99.8 2.1E-20 4.5E-25 143.6 7.9 68 33-101 3-70 (371)
16 PRK14276 chaperone protein Dna 99.8 2.8E-20 6.1E-25 143.2 7.6 68 33-101 3-70 (380)
17 PRK14301 chaperone protein Dna 99.8 3E-20 6.4E-25 142.8 7.7 69 33-101 3-71 (373)
18 PRK14298 chaperone protein Dna 99.8 2.5E-20 5.4E-25 143.4 7.2 69 32-101 3-71 (377)
19 PRK14297 chaperone protein Dna 99.8 2.9E-20 6.2E-25 143.2 7.3 69 33-101 3-71 (380)
20 PRK14299 chaperone protein Dna 99.8 4.6E-20 9.9E-25 137.7 7.9 68 33-101 3-70 (291)
21 PRK14295 chaperone protein Dna 99.8 4.2E-20 9E-25 142.7 7.7 66 33-98 8-73 (389)
22 PRK10767 chaperone protein Dna 99.8 4.6E-20 1E-24 141.6 7.8 69 33-101 3-71 (371)
23 PRK14291 chaperone protein Dna 99.8 5.4E-20 1.2E-24 141.7 7.7 68 33-101 2-69 (382)
24 PTZ00037 DnaJ_C chaperone prot 99.8 4.2E-20 9.1E-25 143.9 7.2 65 33-101 27-91 (421)
25 PRK14280 chaperone protein Dna 99.8 5.6E-20 1.2E-24 141.4 7.7 68 33-101 3-70 (376)
26 PRK14284 chaperone protein Dna 99.8 6.9E-20 1.5E-24 141.5 7.9 67 34-100 1-67 (391)
27 PRK14278 chaperone protein Dna 99.8 4.4E-20 9.5E-25 142.1 6.6 67 34-101 3-69 (378)
28 PRK14281 chaperone protein Dna 99.8 6.7E-20 1.5E-24 141.9 7.6 68 34-101 3-70 (397)
29 PRK14289 chaperone protein Dna 99.8 1.8E-19 4E-24 138.9 8.2 69 33-101 4-72 (386)
30 smart00271 DnaJ DnaJ molecular 99.8 3.2E-19 7E-24 103.9 7.0 58 34-91 1-59 (60)
31 cd06257 DnaJ DnaJ domain or J- 99.8 3.6E-19 7.9E-24 101.9 7.0 55 35-89 1-55 (55)
32 KOG0717 Molecular chaperone (D 99.8 3.3E-19 7.2E-24 138.3 8.0 67 32-98 6-73 (508)
33 KOG0691 Molecular chaperone (D 99.8 5.1E-19 1.1E-23 132.2 8.2 70 33-102 4-73 (296)
34 PRK14290 chaperone protein Dna 99.8 3.1E-19 6.8E-24 136.8 7.1 68 34-101 3-71 (365)
35 TIGR02349 DnaJ_bact chaperone 99.8 4.1E-19 8.9E-24 135.5 7.1 66 35-101 1-66 (354)
36 KOG0715 Molecular chaperone (D 99.8 6.6E-19 1.4E-23 131.5 7.9 68 33-101 42-109 (288)
37 PRK14300 chaperone protein Dna 99.8 5.8E-19 1.3E-23 135.6 7.4 67 34-101 3-69 (372)
38 PRK10266 curved DNA-binding pr 99.8 9.2E-19 2E-23 131.5 8.3 67 33-100 3-69 (306)
39 PRK14293 chaperone protein Dna 99.8 8.4E-19 1.8E-23 134.8 7.7 67 34-101 3-69 (374)
40 KOG0721 Molecular chaperone (D 99.8 1E-18 2.2E-23 124.9 6.8 71 31-101 96-166 (230)
41 PRK14292 chaperone protein Dna 99.8 8.9E-19 1.9E-23 134.5 6.9 66 34-100 2-67 (371)
42 PTZ00341 Ring-infected erythro 99.7 3.8E-18 8.2E-23 141.8 8.0 69 32-101 571-639 (1136)
43 KOG0718 Molecular chaperone (D 99.7 4.6E-18 1E-22 132.3 7.3 70 32-101 7-79 (546)
44 KOG0719 Molecular chaperone (D 99.7 7.4E-18 1.6E-22 121.7 5.8 72 32-103 12-85 (264)
45 COG2214 CbpA DnaJ-class molecu 99.7 6.7E-17 1.4E-21 112.6 7.7 68 32-99 4-72 (237)
46 PHA03102 Small T antigen; Revi 99.7 5E-17 1.1E-21 111.5 5.7 64 34-101 5-70 (153)
47 TIGR03835 termin_org_DnaJ term 99.7 2.5E-16 5.4E-21 128.7 8.0 66 34-100 2-67 (871)
48 PRK05014 hscB co-chaperone Hsc 99.6 5.2E-16 1.1E-20 108.3 7.7 64 34-97 1-71 (171)
49 PRK01356 hscB co-chaperone Hsc 99.6 6.6E-16 1.4E-20 107.4 7.9 64 34-97 2-70 (166)
50 PRK00294 hscB co-chaperone Hsc 99.6 1.8E-15 3.9E-20 105.8 8.1 66 32-97 2-74 (173)
51 PRK03578 hscB co-chaperone Hsc 99.6 2.6E-15 5.6E-20 105.3 8.1 65 33-97 5-76 (176)
52 PTZ00100 DnaJ chaperone protei 99.6 3.4E-15 7.4E-20 98.1 5.5 57 28-88 59-115 (116)
53 KOG0720 Molecular chaperone (D 99.6 6.4E-15 1.4E-19 114.6 7.1 69 29-98 230-298 (490)
54 PRK09430 djlA Dna-J like membr 99.5 1.2E-14 2.6E-19 107.6 6.8 60 31-90 197-263 (267)
55 KOG0722 Molecular chaperone (D 99.5 7.8E-15 1.7E-19 107.6 4.6 65 30-95 29-93 (329)
56 KOG0624 dsRNA-activated protei 99.5 8.5E-14 1.8E-18 106.4 6.0 67 28-94 388-457 (504)
57 PRK01773 hscB co-chaperone Hsc 99.4 5.6E-13 1.2E-17 93.2 7.8 64 34-97 2-72 (173)
58 PHA02624 large T antigen; Prov 99.4 3.2E-13 7E-18 109.0 6.4 60 33-96 10-71 (647)
59 KOG0714 Molecular chaperone (D 99.4 2.6E-13 5.6E-18 98.6 4.2 69 33-101 2-71 (306)
60 COG5407 SEC63 Preprotein trans 99.4 4.3E-13 9.3E-18 104.8 5.4 71 30-100 94-169 (610)
61 KOG0550 Molecular chaperone (D 99.4 7E-13 1.5E-17 102.7 5.2 67 29-95 368-435 (486)
62 KOG1150 Predicted molecular ch 99.3 2.8E-12 6.1E-17 91.3 6.3 61 33-93 52-113 (250)
63 TIGR00714 hscB Fe-S protein as 99.2 3.9E-11 8.5E-16 82.7 7.0 52 46-97 3-59 (157)
64 KOG1789 Endocytosis protein RM 98.9 3.8E-09 8.2E-14 89.7 7.8 59 29-90 1276-1338(2235)
65 COG5269 ZUO1 Ribosome-associat 98.9 1.9E-09 4.1E-14 80.2 4.9 66 31-96 40-110 (379)
66 KOG0723 Molecular chaperone (D 98.9 5.1E-09 1.1E-13 67.6 5.0 64 23-90 45-108 (112)
67 KOG0568 Molecular chaperone (D 98.8 2E-08 4.4E-13 73.4 5.9 60 30-90 43-103 (342)
68 KOG3192 Mitochondrial J-type c 98.4 8.4E-07 1.8E-11 61.0 5.7 69 30-98 4-79 (168)
69 KOG0431 Auxilin-like protein a 97.7 7E-05 1.5E-09 59.5 5.4 46 25-70 379-424 (453)
70 COG1076 DjlA DnaJ-domain-conta 97.7 3.9E-05 8.4E-10 53.6 3.0 56 32-87 111-173 (174)
71 COG1076 DjlA DnaJ-domain-conta 97.3 0.00031 6.6E-09 49.1 3.5 61 36-96 3-70 (174)
72 PF03656 Pam16: Pam16; InterP 97.0 0.0028 6.1E-08 42.4 5.8 57 31-91 55-111 (127)
73 PF13446 RPT: A repeated domai 92.6 0.41 8.9E-06 27.6 4.6 28 33-60 4-31 (62)
74 KOG0724 Zuotin and related mol 91.4 0.35 7.5E-06 36.7 4.3 58 46-103 4-65 (335)
75 PF14687 DUF4460: Domain of un 91.1 0.81 1.7E-05 29.9 5.2 46 45-90 5-54 (112)
76 PF11833 DUF3353: Protein of u 88.0 1.9 4.1E-05 30.8 5.6 41 43-91 1-41 (194)
77 KOG3442 Uncharacterized conser 84.5 3.2 7E-05 27.8 4.9 54 35-92 60-113 (132)
78 COG5552 Uncharacterized conser 81.0 9.7 0.00021 23.3 5.6 34 33-66 2-39 (88)
79 PF07709 SRR: Seven Residue Re 73.2 2 4.4E-05 17.6 0.8 13 76-88 2-14 (14)
80 COG2879 Uncharacterized small 57.0 31 0.00068 20.3 4.0 29 53-83 26-54 (65)
81 PF08447 PAS_3: PAS fold; Int 54.2 4.5 9.9E-05 23.6 0.2 30 33-66 5-35 (91)
82 PF10041 DUF2277: Uncharacteri 50.3 58 0.0012 19.9 6.8 57 33-90 2-62 (78)
83 PF15178 TOM_sub5: Mitochondri 43.9 30 0.00064 19.3 2.3 24 37-60 2-25 (51)
84 PF12434 Malate_DH: Malate deh 39.5 42 0.00091 16.4 2.2 18 47-64 9-26 (28)
85 PF02216 B: B domain; InterPr 34.7 57 0.0012 18.6 2.6 30 35-67 12-41 (54)
86 PF12725 DUF3810: Protein of u 31.9 2E+02 0.0043 22.0 6.0 59 32-90 80-149 (318)
87 PF14706 Tnp_DNA_bind: Transpo 26.3 97 0.0021 17.7 2.7 39 50-90 16-56 (58)
88 KOG3960 Myogenic helix-loop-he 26.3 58 0.0013 24.5 2.2 16 74-89 127-142 (284)
89 PF00076 RRM_1: RNA recognitio 26.3 54 0.0012 17.8 1.7 23 39-61 3-25 (70)
90 cd01780 PLC_epsilon_RA Ubiquit 24.2 82 0.0018 20.0 2.3 35 32-66 9-43 (93)
91 COG0089 RplW Ribosomal protein 24.0 66 0.0014 20.4 1.9 21 39-59 25-45 (94)
92 PF03820 Mtc: Tricarboxylate c 22.6 95 0.002 23.8 2.8 25 44-68 46-70 (308)
93 PF04949 Transcrip_act: Transc 22.0 2.7E+02 0.0058 19.3 4.6 25 71-95 62-86 (159)
94 CHL00030 rpl23 ribosomal prote 21.1 85 0.0018 19.7 1.9 20 39-58 23-42 (93)
95 KOG2320 RAS effector RIN1 (con 21.0 1.4E+02 0.0029 25.3 3.5 25 42-66 397-421 (651)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.2e-26 Score=172.46 Aligned_cols=70 Identities=40% Similarity=0.623 Sum_probs=65.9
Q ss_pred CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
...|||+||||+++|+.+|||+|||+||++||||++++.++|+++|++|++||++||||..|..|++|+.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~ 71 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGH 71 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCc
Confidence 4679999999999999999999999999999999999777799999999999999999999999998863
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-24 Score=162.03 Aligned_cols=76 Identities=32% Similarity=0.500 Sum_probs=71.0
Q ss_pred hhhhhhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974 25 DFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (107)
Q Consensus 25 ~~~~~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~ 100 (107)
.+...+...+|||+||||+.+|+..|||+|||+||+++|||||++.+.|.+.|++|+.||++||||..|..|+.+|
T Consensus 7 ~~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 7 SGAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYG 82 (336)
T ss_pred hhhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 4455666789999999999999999999999999999999999999999999999999999999999999888887
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.5e-22 Score=154.13 Aligned_cols=69 Identities=33% Similarity=0.565 Sum_probs=64.2
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.+|||+|||+||++||||++++...|.++|++|++||++|+||..|..|+.|+.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 369999999999999999999999999999999998655689999999999999999999999998764
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.4e-21 Score=150.13 Aligned_cols=68 Identities=37% Similarity=0.471 Sum_probs=63.4
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+||++||||+++++ .|.++|++|++||++|+||..|..|+.|+.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~-~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP-DAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 46999999999999999999999999999999999764 489999999999999999999999998774
No 5
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=3.1e-21 Score=148.23 Aligned_cols=69 Identities=36% Similarity=0.590 Sum_probs=64.5
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+|+++||||++++...|.++|++|++||++|+||..|..|+.|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 469999999999999999999999999999999998766689999999999999999999999998764
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.3e-21 Score=148.91 Aligned_cols=69 Identities=32% Similarity=0.419 Sum_probs=64.9
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+|+++||||++++.+.|.+.|++|++||++|+||..|..|+.|+.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 479999999999999999999999999999999998766689999999999999999999999999864
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.5e-21 Score=144.46 Aligned_cols=65 Identities=40% Similarity=0.622 Sum_probs=62.8
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~ 100 (107)
...+|+||||+++|+.+|||+|||+|+++|||||+++ +.++|++|.+||++||||..|.+|+.|+
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g 67 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYG 67 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 5689999999999999999999999999999999998 7899999999999999999999999998
No 8
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1e-20 Score=138.61 Aligned_cols=70 Identities=37% Similarity=0.557 Sum_probs=66.4
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQV 102 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q~ 102 (107)
..++|+||||+++++.++||++||+|++++|||++++.+++.++|++||.||++|+||..|+.|++++.+
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~ 99 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL 99 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence 6689999999999999999999999999999999999777999999999999999999999999999744
No 9
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.5e-20 Score=145.03 Aligned_cols=69 Identities=45% Similarity=0.631 Sum_probs=64.6
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+|+++||||++++...++++|++|++||++|+||..|..|+.|+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 469999999999999999999999999999999998766689999999999999999999999998774
No 10
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.83 E-value=3.6e-20 Score=109.49 Aligned_cols=62 Identities=35% Similarity=0.527 Sum_probs=57.3
Q ss_pred ChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhhchHHHHHH
Q 033974 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQEKNGSLILMVK 96 (107)
Q Consensus 35 ~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (107)
|||+||||+++++.++|+++|+++++.+|||+++... .+.+.|..|++||++|+||..|..|
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~Y 63 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRY 63 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhc
Confidence 6899999999999999999999999999999987764 6889999999999999999877755
No 11
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=2.1e-20 Score=143.28 Aligned_cols=69 Identities=36% Similarity=0.591 Sum_probs=64.6
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+|+++||||++++.+.+.+.|++|++||++|+||..|..|+.|+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~ 71 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH 71 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence 579999999999999999999999999999999998766689999999999999999999999998763
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.5e-20 Score=144.09 Aligned_cols=68 Identities=35% Similarity=0.566 Sum_probs=64.0
Q ss_pred CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
.|||+||||+++|+.++||+|||+|+++||||++++.+.+.++|++|++||++|+||..|..|+.|+.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 69999999999999999999999999999999998766689999999999999999999999988764
No 13
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.9e-20 Score=144.09 Aligned_cols=69 Identities=35% Similarity=0.594 Sum_probs=64.0
Q ss_pred CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
...|||+||||+++|+.+|||+|||+|+++||||++++ +.|.++|++|++||++|+||..|..|+.|+.
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 35799999999999999999999999999999999986 4589999999999999999999999998774
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.9e-20 Score=143.67 Aligned_cols=69 Identities=39% Similarity=0.666 Sum_probs=63.5
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.+|||+|||+|+++||||+++.. ..|.++|++|++||++|+||..|..|+.|+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 46999999999999999999999999999999998753 4588999999999999999999999888763
No 15
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.1e-20 Score=143.63 Aligned_cols=68 Identities=34% Similarity=0.584 Sum_probs=63.0
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+|+++||||+++++ .++++|++|++||++|+||..|..|+.|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP-DAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 46999999999999999999999999999999998754 488999999999999999999999998763
No 16
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.8e-20 Score=143.24 Aligned_cols=68 Identities=29% Similarity=0.541 Sum_probs=63.2
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.+|||+|||+|+++||||+++++ .+.++|++|++||++|+||..|..|+.|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP-GAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-CHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 46999999999999999999999999999999999864 488999999999999999999999998763
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=3e-20 Score=142.84 Aligned_cols=69 Identities=36% Similarity=0.622 Sum_probs=64.4
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+|+++||||++++...++++|++|++||++|+||..|..|+.|+.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 469999999999999999999999999999999998766689999999999999999999999998763
No 18
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.5e-20 Score=143.44 Aligned_cols=69 Identities=38% Similarity=0.628 Sum_probs=63.4
Q ss_pred CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
...|||+||||+++|+.++||+|||+|+++||||+++++ .+.++|++|++||++|+||..|..|+.|+.
T Consensus 3 ~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 3 TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP-DAEEKFKEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh-hHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence 356999999999999999999999999999999998764 488999999999999999999999998763
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.9e-20 Score=143.16 Aligned_cols=69 Identities=38% Similarity=0.640 Sum_probs=64.3
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+|+++||||++++.+.|+++|++|++||++|+||..|..|+.|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 469999999999999999999999999999999998766689999999999999999999999988763
No 20
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.6e-20 Score=137.74 Aligned_cols=68 Identities=37% Similarity=0.559 Sum_probs=62.7
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+|++++|||+++++ .+.++|++|++||++|+||..|..|+.++.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP-GAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 46999999999999999999999999999999999754 488999999999999999999998888764
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.2e-20 Score=142.71 Aligned_cols=66 Identities=42% Similarity=0.577 Sum_probs=62.0
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK 98 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (107)
..|||+||||+++|+.++||+|||+|+++||||++++...+.++|++|++||++|+||..|..|+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 469999999999999999999999999999999998766689999999999999999999988886
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.6e-20 Score=141.56 Aligned_cols=69 Identities=33% Similarity=0.620 Sum_probs=64.1
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+|+++||||++++...|.+.|++|++||++|+||..|..|+.++.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 71 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH 71 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence 469999999999999999999999999999999998666688999999999999999999999988763
No 23
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.4e-20 Score=141.73 Aligned_cols=68 Identities=46% Similarity=0.643 Sum_probs=63.0
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+|+++||||+++++ .+.++|++|++||++|+||..|..|+.|+.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP-EAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 46999999999999999999999999999999999874 488999999999999999999999988764
No 24
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.81 E-value=4.2e-20 Score=143.92 Aligned_cols=65 Identities=31% Similarity=0.547 Sum_probs=60.6
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+||++||||++++ .++|++|++||++|+||..|..|+.++.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 5799999999999999999999999999999999853 4899999999999999999999998764
No 25
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.6e-20 Score=141.43 Aligned_cols=68 Identities=34% Similarity=0.604 Sum_probs=63.1
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.++||+|||+|+++||||+++++. +.++|++|++||++|+||..|..|+.|+.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~-a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEG-ADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 469999999999999999999999999999999987654 89999999999999999999999998763
No 26
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=6.9e-20 Score=141.53 Aligned_cols=67 Identities=37% Similarity=0.583 Sum_probs=63.1
Q ss_pred CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (107)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~ 100 (107)
.|||+||||+++|+.++||+|||+|+++||||++++...+.++|++|++||++|+||..|..|+.|+
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 67 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYG 67 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 3899999999999999999999999999999999877679999999999999999999999888876
No 27
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.4e-20 Score=142.10 Aligned_cols=67 Identities=31% Similarity=0.462 Sum_probs=62.4
Q ss_pred CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
.|||+||||+++|+.++||+|||+|+++||||+++++ .|.++|++|++||++|+||..|..|+.|+.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~-~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDE-EAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcH-HHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 6999999999999999999999999999999999854 488999999999999999999999988763
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=6.7e-20 Score=141.85 Aligned_cols=68 Identities=38% Similarity=0.623 Sum_probs=63.7
Q ss_pred CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
.|||+||||+++|+.++||+|||+|+++||||++++...|.+.|++|++||++|+||..|..|+.|+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 69999999999999999999999999999999998766688999999999999999999999988763
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.8e-19 Score=138.88 Aligned_cols=69 Identities=32% Similarity=0.503 Sum_probs=64.6
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+.+|||+|||+|+++||||++++.+.+.++|++|++||++|+||..|..|+.|+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 579999999999999999999999999999999998776799999999999999999999998888764
No 30
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.79 E-value=3.2e-19 Score=103.88 Aligned_cols=58 Identities=47% Similarity=0.767 Sum_probs=53.8
Q ss_pred CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHhhchH
Q 033974 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQEKNGSL 91 (107)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~a~~~f~~i~~Ay~~L~d~~ 91 (107)
.+||+||||+++++.++||++|+++++.+|||++++ ...+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999986 4568899999999999999983
No 31
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.79 E-value=3.6e-19 Score=101.91 Aligned_cols=55 Identities=53% Similarity=0.838 Sum_probs=51.8
Q ss_pred ChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhc
Q 033974 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNG 89 (107)
Q Consensus 35 ~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d 89 (107)
|||+||||+++++.++|+++|+++++.+|||++++...+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999998755589999999999999986
No 32
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.3e-19 Score=138.34 Aligned_cols=67 Identities=40% Similarity=0.612 Sum_probs=61.3
Q ss_pred CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIK 98 (107)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (107)
....||+||||...++..+||++||+||++|||||+++. +++.+.|+.|+.||+|||||..|.-|+.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~ 73 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDS 73 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHH
Confidence 456899999999999999999999999999999997766 6799999999999999999998877654
No 33
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.1e-19 Score=132.22 Aligned_cols=70 Identities=34% Similarity=0.544 Sum_probs=66.3
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQV 102 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q~ 102 (107)
..|||.||||+..++..+|+++||..++++|||||++.+.|.+.|+.|.+||++|+|+..|..|++++.-
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 6799999999999999999999999999999999999988999999999999999999999988887643
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.1e-19 Score=136.80 Aligned_cols=68 Identities=38% Similarity=0.589 Sum_probs=62.9
Q ss_pred CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
.|||+||||+++|+.+|||+|||+|++++|||++++.. .|.+.|++|++||++|+||..|..|+.|+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 69999999999999999999999999999999987653 689999999999999999999998888763
No 35
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.78 E-value=4.1e-19 Score=135.49 Aligned_cols=66 Identities=45% Similarity=0.688 Sum_probs=61.1
Q ss_pred ChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 35 ~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
|||+||||+++|+.++||+|||+|+++||||+++. ..+.+.|++|++||++|+|+..|..|+.|+.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence 69999999999999999999999999999999974 3488999999999999999999999988764
No 36
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6.6e-19 Score=131.51 Aligned_cols=68 Identities=38% Similarity=0.555 Sum_probs=63.1
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..|||+||||+++|+..|||+||++|++++|||.+.++ ++.+.|++|.+||++|+|+..|..|+.++-
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~ 109 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGL 109 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 33999999999999999999999999999999999998 599999999999999999999988877654
No 37
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.8e-19 Score=135.64 Aligned_cols=67 Identities=31% Similarity=0.594 Sum_probs=62.1
Q ss_pred CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
.|||+||||+++|+.++||+|||+++++||||+++.. .+++.|++|++||++|+|+..|..|+.|+.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK-DAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-CHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 6999999999999999999999999999999998754 488999999999999999999999988763
No 38
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.77 E-value=9.2e-19 Score=131.48 Aligned_cols=67 Identities=33% Similarity=0.453 Sum_probs=62.2
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~ 100 (107)
..|||+||||+++++.++||+|||+|++++|||+++.. .+.+.|++|++||++|+||..|..|+.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~-~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 36999999999999999999999999999999998764 48999999999999999999999888875
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=8.4e-19 Score=134.81 Aligned_cols=67 Identities=40% Similarity=0.624 Sum_probs=62.5
Q ss_pred CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
.|||+||||+++|+.++||+|||+|++++|||++++. .+.++|+.|++||++|+||..|..|+.++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP-GAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-CHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 6999999999999999999999999999999998764 388999999999999999999999998764
No 40
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1e-18 Score=124.87 Aligned_cols=71 Identities=34% Similarity=0.475 Sum_probs=65.4
Q ss_pred cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
...-|+|+||||+++++..|||++||+|++++||||++..++.++.|..|.+||+.|+|+..|..+.+||.
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 46779999999999999999999999999999999998877788999999999999999999998877763
No 41
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=8.9e-19 Score=134.45 Aligned_cols=66 Identities=39% Similarity=0.654 Sum_probs=61.7
Q ss_pred CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (107)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~ 100 (107)
.|||+||||+++|+.++||+|||+|++++|||++++. .+.++|++|++||++|+||..|..|+.++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~-~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G 67 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK-GAAEKFAQINEAYAVLSDAEKRAHYDRFG 67 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence 4899999999999999999999999999999999854 48999999999999999999999998876
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.74 E-value=3.8e-18 Score=141.81 Aligned_cols=69 Identities=30% Similarity=0.393 Sum_probs=64.7
Q ss_pred CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
...+||+||||+++|+..+||+|||+||+++|||+++++ .|..+|+.|++||++|+||..|..|+.+|.
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~ 639 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGY 639 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence 468999999999999999999999999999999999876 488999999999999999999999998874
No 43
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.6e-18 Score=132.31 Aligned_cols=70 Identities=31% Similarity=0.530 Sum_probs=65.0
Q ss_pred CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR---DCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
...++|.+|+|+++|+.+||++|||++++.|||||+.++ ..|++.|+.|..||++|+||..|..|+.+|.
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~ 79 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE 79 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 456999999999999999999999999999999999876 3589999999999999999999999999873
No 44
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.4e-18 Score=121.68 Aligned_cols=72 Identities=39% Similarity=0.578 Sum_probs=65.3
Q ss_pred CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHH
Q 033974 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQK--DRDCATSRFQEINEAYQEKNGSLILMVKIKFNQVQ 103 (107)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~--~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q~~ 103 (107)
...++|+||||..+|+..+|++||+++++.+|||+++ ...++.+.|+.|+.||.+|+|...|..|+.-|+.+
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 4559999999999999999999999999999999995 33569999999999999999999999998877654
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6.7e-17 Score=112.65 Aligned_cols=68 Identities=40% Similarity=0.540 Sum_probs=63.0
Q ss_pred CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHHHHHhhchHHHHHHHhH
Q 033974 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC-ATSRFQEINEAYQEKNGSLILMVKIKF 99 (107)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~-a~~~f~~i~~Ay~~L~d~~~r~~~~~~ 99 (107)
...++|+||||+++++..+|+++||++++++|||+++.... +.+.|..|++||++|+|+..|..|+.+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 45799999999999999999999999999999999998774 899999999999999999988877765
No 46
>PHA03102 Small T antigen; Reviewed
Probab=99.68 E-value=5e-17 Score=111.54 Aligned_cols=64 Identities=25% Similarity=0.447 Sum_probs=57.9
Q ss_pred CChhhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 34 KDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 34 ~~~y~iLgl~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..+|+||||+++| +.++||+|||++++++|||++++ .+.|++|++||++|+|+..|..++.++.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~ 70 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEE 70 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCC
Confidence 4689999999999 99999999999999999999653 5799999999999999999988877654
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.66 E-value=2.5e-16 Score=128.68 Aligned_cols=66 Identities=39% Similarity=0.578 Sum_probs=61.5
Q ss_pred CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (107)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~ 100 (107)
.|||+||||+++|+.++||++||+|++++|||++++ ..+...|++|++||++|+||..|..|+.++
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG 67 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYG 67 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence 599999999999999999999999999999999887 447889999999999999999999888765
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.65 E-value=5.2e-16 Score=108.30 Aligned_cols=64 Identities=25% Similarity=0.387 Sum_probs=55.6
Q ss_pred CChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKI 97 (107)
Q Consensus 34 ~~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (107)
.|||+||||++. ++..+|+++|+++++++|||+..+.. .+.+.|..||+||++|+||..|..|.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yl 71 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYL 71 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHH
Confidence 389999999995 78899999999999999999976542 25678999999999999998888664
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.65 E-value=6.6e-16 Score=107.36 Aligned_cols=64 Identities=22% Similarity=0.401 Sum_probs=55.1
Q ss_pred CChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQEKNGSLILMVKI 97 (107)
Q Consensus 34 ~~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (107)
.|||+||||++. ++..+|+++|+++++++|||+..+.. .+.+.+..||+||++|+||..|..|.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~Yl 70 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYM 70 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 489999999996 78999999999999999999987542 24456889999999999998888663
No 50
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.62 E-value=1.8e-15 Score=105.82 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=57.5
Q ss_pred CCCChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974 32 KPKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKI 97 (107)
Q Consensus 32 ~~~~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (107)
...|||++|||++. .+..+|+++||++++++|||+..+.. .+.+.|..||+||++|+||..|..|.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~Yl 74 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYL 74 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 46799999999996 67899999999999999999986642 25678999999999999998887654
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.61 E-value=2.6e-15 Score=105.28 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=55.5
Q ss_pred CCChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhhchHHHHHHH
Q 033974 33 PKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRDC-----ATSRFQEINEAYQEKNGSLILMVKI 97 (107)
Q Consensus 33 ~~~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (107)
..|||+||||++. ++..+|+++|+++++++|||++..... +.+.+..||+||++|+||..|..|.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yl 76 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYL 76 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence 4799999999985 689999999999999999999875432 3455689999999999998887654
No 52
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.58 E-value=3.4e-15 Score=98.12 Aligned_cols=57 Identities=30% Similarity=0.324 Sum_probs=50.1
Q ss_pred hhhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhh
Q 033974 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKN 88 (107)
Q Consensus 28 ~~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~ 88 (107)
+......++|+||||+++++.++|+++||++++++|||+.+ +.+.|++|++||++|.
T Consensus 59 ~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 59 ENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG----STYIASKVNEAKDLLL 115 (116)
T ss_pred cCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHh
Confidence 33445679999999999999999999999999999999954 3478899999999995
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.4e-15 Score=114.60 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=62.7
Q ss_pred hhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK 98 (107)
Q Consensus 29 ~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (107)
......|+|.+|||+.+++.++||+.||++|...||||+.. +.|++.|+.|+.||++|+|++.|..|+.
T Consensus 230 re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~~~kR~eYd~ 298 (490)
T KOG0720|consen 230 RELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGDSVKRKEYDL 298 (490)
T ss_pred hhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 34458899999999999999999999999999999999995 5599999999999999999988887664
No 54
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.55 E-value=1.2e-14 Score=107.62 Aligned_cols=60 Identities=32% Similarity=0.469 Sum_probs=53.3
Q ss_pred cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----hHHHHHHHHHHHHHHHhhch
Q 033974 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD---R----DCATSRFQEINEAYQEKNGS 90 (107)
Q Consensus 31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~----~~a~~~f~~i~~Ay~~L~d~ 90 (107)
....++|+||||++++|.++||++||+|++++|||+..+ + +.+.++|++|++||++|+..
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 455799999999999999999999999999999999643 1 34889999999999999874
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.8e-15 Score=107.55 Aligned_cols=65 Identities=26% Similarity=0.446 Sum_probs=59.7
Q ss_pred hcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHH
Q 033974 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV 95 (107)
Q Consensus 30 ~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (107)
.....|.|+||||++.++..+|.+|||+|++++|||++++++ +.+.|..|-.||++|.|+..|..
T Consensus 29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e-~k~~F~~iAtayeilkd~e~rt~ 93 (329)
T KOG0722|consen 29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE-SKKLFVKIATAYEILKDNETRTQ 93 (329)
T ss_pred cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch-hhhhhhhhhcccccccchhhHHh
Confidence 356789999999999999999999999999999999999987 66999999999999999977763
No 56
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.47 E-value=8.5e-14 Score=106.40 Aligned_cols=67 Identities=34% Similarity=0.538 Sum_probs=60.4
Q ss_pred hhhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhhchHHHH
Q 033974 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQEKNGSLILM 94 (107)
Q Consensus 28 ~~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~~L~d~~~r~ 94 (107)
......+|||+||||.++|+..||.+|||+++.+||||-.++.+ .|+++|.-|-.|-++|+||..|-
T Consensus 388 kkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRr 457 (504)
T KOG0624|consen 388 KKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRR 457 (504)
T ss_pred HHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHh
Confidence 35567899999999999999999999999999999999988763 58999999999999999996554
No 57
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.43 E-value=5.6e-13 Score=93.25 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=55.6
Q ss_pred CChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKI 97 (107)
Q Consensus 34 ~~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (107)
.|||++|||++. .+..++++.|+.+++.+|||+..... .+.+....||+||.+|+||..|..|-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL 72 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 489999999995 89999999999999999999976652 35667889999999999998887553
No 58
>PHA02624 large T antigen; Provisional
Probab=99.42 E-value=3.2e-13 Score=108.99 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=54.4
Q ss_pred CCChhhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHH
Q 033974 33 PKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVK 96 (107)
Q Consensus 33 ~~~~y~iLgl~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (107)
..++|+||||+++| +.++||+|||++++++|||++++ .+.|++|+.||++|+|+..+..+
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 56899999999999 99999999999999999999653 58999999999999999876654
No 59
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.6e-13 Score=98.58 Aligned_cols=69 Identities=39% Similarity=0.661 Sum_probs=61.4
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFNQ 101 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q 101 (107)
..++|.||||.+.++.++|++||+++++++|||+++.. ..+..+|.+|.+||++|+|+..|..++.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46899999999999999999999999999999997776 2355689999999999999999998888764
No 60
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.39 E-value=4.3e-13 Score=104.79 Aligned_cols=71 Identities=25% Similarity=0.423 Sum_probs=63.4
Q ss_pred hcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQEKNGSLILMVKIKFN 100 (107)
Q Consensus 30 ~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~ 100 (107)
....-|+|+||||+.+++..+||++||+|+.++||||.+.- .+.++.+.+|++||..|+|...|..|-.+|
T Consensus 94 ~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 94 YRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred HHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 34667999999999999999999999999999999997762 457899999999999999999998877764
No 61
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7e-13 Score=102.71 Aligned_cols=67 Identities=36% Similarity=0.589 Sum_probs=61.2
Q ss_pred hhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHHHH
Q 033974 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMV 95 (107)
Q Consensus 29 ~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (107)
......+||.|||+...++..+|+++||++++.+|||++.+. .+++.+|++|-+||.+|+||..|..
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 456788999999999999999999999999999999998887 6799999999999999999975553
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.8e-12 Score=91.26 Aligned_cols=61 Identities=28% Similarity=0.523 Sum_probs=57.3
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLIL 93 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r 93 (107)
+.|+|+||.|.+..+.++||+.||+|++..|||||++. +.|..+|..|.+||..|-|+..|
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~r 113 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIR 113 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 56999999999999999999999999999999999998 67999999999999999999744
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.22 E-value=3.9e-11 Score=82.75 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974 46 ATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQEKNGSLILMVKI 97 (107)
Q Consensus 46 a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~~~ 97 (107)
.+..+|+++|+++++++|||+.... ..+...|..||+||++|+||..|..|.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~yl 59 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYM 59 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 5789999999999999999996543 236788999999999999998877554
No 64
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=3.8e-09 Score=89.71 Aligned_cols=59 Identities=31% Similarity=0.486 Sum_probs=50.7
Q ss_pred hhcCCCChhhhhcCCCC----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhch
Q 033974 29 LLAKPKDYYKILEVDYD----ATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGS 90 (107)
Q Consensus 29 ~~~~~~~~y~iLgl~~~----a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~ 90 (107)
...+..+.|+||.|+-+ .+.++||++|++|+.+|||||++. ..+.|..+|+||+.|+..
T Consensus 1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLSSE 1338 (2235)
T ss_pred CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHHHH
Confidence 34467789999999853 456999999999999999999987 679999999999999943
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.9e-09 Score=80.20 Aligned_cols=66 Identities=21% Similarity=0.247 Sum_probs=55.7
Q ss_pred cCCCChhhhhcCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCchHHHHHHHHHHHHHHHhhchHHHHHH
Q 033974 31 AKPKDYYKILEVDY---DATEEEIRSNYIRLALKWHPDKQ--KDRDCATSRFQEINEAYQEKNGSLILMVK 96 (107)
Q Consensus 31 ~~~~~~y~iLgl~~---~a~~~~Ik~ayr~l~~~~HPDk~--~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (107)
+...|+|.+|||+. .+++.+|.++.++.+.+||||+. ++.-+..+.|..|+.||++|+|+..|.-|
T Consensus 40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qy 110 (379)
T COG5269 40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQY 110 (379)
T ss_pred hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhc
Confidence 45689999999996 58899999999999999999996 22223679999999999999999877643
No 66
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.1e-09 Score=67.63 Aligned_cols=64 Identities=23% Similarity=0.221 Sum_probs=54.9
Q ss_pred hhhhhhhhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhch
Q 033974 23 NFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGS 90 (107)
Q Consensus 23 ~~~~~~~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~ 90 (107)
....++...+....-.||||+++++.++||.++|+++...|||+.+.+--+. +||+|+++|...
T Consensus 45 y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAs----KINEAKdlLe~~ 108 (112)
T KOG0723|consen 45 YKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLAS----KINEAKDLLEGT 108 (112)
T ss_pred hhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHH----HHHHHHHHHhcc
Confidence 3455666667788889999999999999999999999999999999875444 999999999764
No 67
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2e-08 Score=73.40 Aligned_cols=60 Identities=28% Similarity=0.490 Sum_probs=51.8
Q ss_pred hcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH-Hhhch
Q 033974 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ-EKNGS 90 (107)
Q Consensus 30 ~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~-~L~d~ 90 (107)
......+|.||||..+++.++++.+|..|++.+|||.+.... ..+.|..|.+||. +|+.-
T Consensus 43 ke~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a-daa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 43 KEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA-DAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc-cHHHHHHHHHHHHHHHHHH
Confidence 344568999999999999999999999999999999877643 6789999999998 66543
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=8.4e-07 Score=61.03 Aligned_cols=69 Identities=20% Similarity=0.439 Sum_probs=56.9
Q ss_pred hcCCCChhhhhcCCC--CCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974 30 LAKPKDYYKILEVDY--DATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQEKNGSLILMVKIK 98 (107)
Q Consensus 30 ~~~~~~~y~iLgl~~--~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~~~~ 98 (107)
+....+||.++|... ..++..++..|...++++|||+.+.+ ..|.+...+|++||.+|.||..|..|..
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456779999998665 56788888899999999999994443 3477889999999999999999987653
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.71 E-value=7e-05 Score=59.47 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=35.0
Q ss_pred hhhhhhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 033974 25 DFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR 70 (107)
Q Consensus 25 ~~~~~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~ 70 (107)
+..+.+....+=|+=++|..-++.++||++||+..+.+||||.+..
T Consensus 379 STLh~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~ 424 (453)
T KOG0431|consen 379 STLHYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQK 424 (453)
T ss_pred HHHhHhhcCccCcccCchhhccCHHHHHHHHHhhhheeCcccccCC
Confidence 3333333334555666777788999999999999999999998776
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=3.9e-05 Score=53.58 Aligned_cols=56 Identities=32% Similarity=0.557 Sum_probs=48.3
Q ss_pred CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHHh
Q 033974 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-------DCATSRFQEINEAYQEK 87 (107)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-------~~a~~~f~~i~~Ay~~L 87 (107)
...+.|.+||+....+..+|+++|+++....|||+..+. +.+.+.+++|+.||+.+
T Consensus 111 ~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 111 DREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred cchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 337999999999999999999999999999999995433 35788899999999754
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00031 Score=49.06 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=47.4
Q ss_pred hhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhchHHHHHH
Q 033974 36 YYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVK 96 (107)
Q Consensus 36 ~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~ 96 (107)
++-++|+.+. ...+.++..|+.+.+.+|||+..... .+...+..++.||.+|.+|..|..+
T Consensus 3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~ 70 (174)
T COG1076 3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEY 70 (174)
T ss_pred cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4455566553 35677999999999999999977653 2456899999999999999877654
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.98 E-value=0.0028 Score=42.43 Aligned_cols=57 Identities=21% Similarity=0.199 Sum_probs=42.5
Q ss_pred cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchH
Q 033974 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSL 91 (107)
Q Consensus 31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~ 91 (107)
........||||++..+.++|.+.|..|-...+|++++. .-.-.+|..|.+.|..+.
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999998765 456668999999998765
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=92.59 E-value=0.41 Score=27.56 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=25.3
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHH
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLAL 60 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~ 60 (107)
....|++|||++..+.+.|-.+|+....
T Consensus 4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 4 VEEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999999887
No 74
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=0.35 Score=36.67 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHH
Q 033974 46 ATEEEIRSNYIRLALKWHPDKQKD----RDCATSRFQEINEAYQEKNGSLILMVKIKFNQVQ 103 (107)
Q Consensus 46 a~~~~Ik~ayr~l~~~~HPDk~~~----~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q~~ 103 (107)
++...|..+|+..+...||++... .....+.|.+|.+||.+|.+...|...+....+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~ 65 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFA 65 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhHHH
Confidence 567889999999999999999752 1235678999999999999854444444433333
No 75
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=91.15 E-value=0.81 Score=29.89 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHhhch
Q 033974 45 DATEEEIRSNYIRLALKWHPDKQKDRD----CATSRFQEINEAYQEKNGS 90 (107)
Q Consensus 45 ~a~~~~Ik~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~ 90 (107)
..+..+++.+.|.+-++.|||..+..+ ..++-++.++.-.+.|..+
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 456788999999999999999866553 2345566666666777664
No 76
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=87.98 E-value=1.9 Score=30.75 Aligned_cols=41 Identities=27% Similarity=0.240 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchH
Q 033974 43 DYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSL 91 (107)
Q Consensus 43 ~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~ 91 (107)
+++|+++||.+|+..+..+|--| .+.-..|..||+.+-=..
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~ILM~r 41 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAILMER 41 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999322 355668999998775554
No 77
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.50 E-value=3.2 Score=27.77 Aligned_cols=54 Identities=20% Similarity=0.115 Sum_probs=41.6
Q ss_pred ChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHH
Q 033974 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLI 92 (107)
Q Consensus 35 ~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~ 92 (107)
..-.||+|++..+.++|.+.|..|-....+.+++.- -.-.+|..|-+.|..+..
T Consensus 60 Ea~qILnV~~~ln~eei~k~yehLFevNdkskGGSF----YLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 60 EAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSF----YLQSKVFRAKERLDEELK 113 (132)
T ss_pred HHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcce----eehHHHHHHHHHHHHHHH
Confidence 445899999999999999999999999988887653 333466667777765544
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=80.95 E-value=9.7 Score=23.34 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=27.7
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHh----CCCC
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKW----HPDK 66 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~----HPDk 66 (107)
++|--+++|+++.++..||+.+-++.++++ ||..
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~ 39 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSA 39 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcch
Confidence 456668899999999999999988887776 5554
No 79
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=73.23 E-value=2 Score=17.62 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhh
Q 033974 76 RFQEINEAYQEKN 88 (107)
Q Consensus 76 ~f~~i~~Ay~~L~ 88 (107)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888774
No 80
>COG2879 Uncharacterized small protein [Function unknown]
Probab=57.04 E-value=31 Score=20.34 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 033974 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEA 83 (107)
Q Consensus 53 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~A 83 (107)
..|-.-+++.|||+.+-. -.+-|.+-++|
T Consensus 26 dnYVehmr~~hPd~p~mT--~~EFfrec~da 54 (65)
T COG2879 26 DNYVEHMRKKHPDKPPMT--YEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHHhCcCCCccc--HHHHHHHHHHh
Confidence 357777899999998764 35566655544
No 81
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=54.25 E-value=4.5 Score=23.63 Aligned_cols=30 Identities=27% Similarity=0.618 Sum_probs=21.0
Q ss_pred CCChhhhhcCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 033974 33 PKDYYKILEVDYDATEEEI-RSNYIRLALKWHPDK 66 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~I-k~ayr~l~~~~HPDk 66 (107)
..+++++||++ ++++ ......+....|||=
T Consensus 5 s~~~~~i~G~~----~~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYS----PEEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-----HHHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCC----HHHhccCCHHHHHhhcCHHH
Confidence 45788999995 4566 566777888999984
No 82
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=50.31 E-value=58 Score=19.95 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=37.8
Q ss_pred CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHH----HHHHHHHHHhhch
Q 033974 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRF----QEINEAYQEKNGS 90 (107)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f----~~i~~Ay~~L~d~ 90 (107)
++|--.+.|+.|.++.+||..|=.+.+++..=-..+... ..+.| .+|..+-..|-+.
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~a-n~eaF~~AV~eva~at~~LL~~ 62 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAA-NAEAFDRAVAEVAAATRRLLDS 62 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchh-hHHHHHHHHHHHHHHHHHHHHh
Confidence 345556778999999999999998888888544433321 23333 4566666666554
No 83
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=43.93 E-value=30 Score=19.26 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=19.5
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHH
Q 033974 37 YKILEVDYDATEEEIRSNYIRLAL 60 (107)
Q Consensus 37 y~iLgl~~~a~~~~Ik~ayr~l~~ 60 (107)
+++=|+.|..+++|.|+.-|+-..
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 467799999999999998887543
No 84
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=39.50 E-value=42 Score=16.45 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 033974 47 TEEEIRSNYIRLALKWHP 64 (107)
Q Consensus 47 ~~~~Ik~ayr~l~~~~HP 64 (107)
..++.+.+.|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347788999999999983
No 85
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=34.72 E-value=57 Score=18.56 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=18.1
Q ss_pred ChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 033974 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ 67 (107)
Q Consensus 35 ~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~ 67 (107)
-||+||+++.-. . +=|-.|- -.++-||+..
T Consensus 12 AFY~vl~~~nLt-e-eQrn~yI-~~lKddPs~s 41 (54)
T PF02216_consen 12 AFYEVLHMPNLT-E-EQRNGYI-QSLKDDPSRS 41 (54)
T ss_dssp HHHHHHCSTTS--H-HHHHHHH-HHHHH-GCCH
T ss_pred HHHHHHcCCCcC-H-HHHHhHH-HHHhhChHHH
Confidence 589999987643 2 2244454 3567789873
No 86
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=31.93 E-value=2e+02 Score=21.96 Aligned_cols=59 Identities=17% Similarity=0.109 Sum_probs=39.4
Q ss_pred CCCChhhhhcCCC-CCCHHHHHHHHHHHHHH-------hCCCCCCCc---hHHHHHHHHHHHHHHHhhch
Q 033974 32 KPKDYYKILEVDY-DATEEEIRSNYIRLALK-------WHPDKQKDR---DCATSRFQEINEAYQEKNGS 90 (107)
Q Consensus 32 ~~~~~y~iLgl~~-~a~~~~Ik~ayr~l~~~-------~HPDk~~~~---~~a~~~f~~i~~Ay~~L~d~ 90 (107)
-..+.++-||++. ..+.+|+.+--..++.+ .++|..+.- ..-.+.+.++.+||+.|.+.
T Consensus 80 ~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 80 YRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred CCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 3456778899998 78888877766655433 344332111 12468899999999999764
No 87
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=26.33 E-value=97 Score=17.72 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHhhch
Q 033974 50 EIRSNYIRLALK--WHPDKQKDRDCATSRFQEINEAYQEKNGS 90 (107)
Q Consensus 50 ~Ik~ayr~l~~~--~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~ 90 (107)
-+.+.+.+++.. -||... -+.+.+....+.-||..|+||
T Consensus 16 Rl~~Rl~~l~~~la~~p~~S--ip~a~~~wa~tkaAYRF~~N~ 56 (58)
T PF14706_consen 16 RLTRRLVKLAESLAEKPGAS--IPQACQDWAETKAAYRFFRNP 56 (58)
T ss_dssp HHHHHHHHHHHHHHHTTTS---HHHHTT-HHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHCCCCc--cchhccCHHHHHHHHHhhcCC
Confidence 356677777554 467653 234666777889999999887
No 88
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=26.28 E-value=58 Score=24.53 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhc
Q 033974 74 TSRFQEINEAYQEKNG 89 (107)
Q Consensus 74 ~~~f~~i~~Ay~~L~d 89 (107)
..++++||+|+++|+-
T Consensus 127 RRRLkKVNEAFE~LKR 142 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLKR 142 (284)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3568899999999863
No 89
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=26.27 E-value=54 Score=17.75 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=18.8
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHH
Q 033974 39 ILEVDYDATEEEIRSNYIRLALK 61 (107)
Q Consensus 39 iLgl~~~a~~~~Ik~ayr~l~~~ 61 (107)
|=||+++++.++|++.|......
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTE
T ss_pred EcCCCCcCCHHHHHHHHHHhhhc
Confidence 34789999999999999886554
No 90
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=24.22 E-value=82 Score=19.97 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=24.5
Q ss_pred CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCC
Q 033974 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDK 66 (107)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk 66 (107)
....+|-||.++...|..+|-+.=-..|++-+||-
T Consensus 9 s~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~ 43 (93)
T cd01780 9 SPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNP 43 (93)
T ss_pred CCCCCeeEEEccccccHHHHHHHHHHHhccCCCCc
Confidence 45689999999998887775544444455557775
No 91
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=24.04 E-value=66 Score=20.37 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.2
Q ss_pred hhcCCCCCCHHHHHHHHHHHH
Q 033974 39 ILEVDYDATEEEIRSNYIRLA 59 (107)
Q Consensus 39 iLgl~~~a~~~~Ik~ayr~l~ 59 (107)
+|-|++.|+..+||.|...+-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 677899999999999998773
No 92
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=22.60 E-value=95 Score=23.78 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC
Q 033974 44 YDATEEEIRSNYIRLALKWHPDKQK 68 (107)
Q Consensus 44 ~~a~~~~Ik~ayr~l~~~~HPDk~~ 68 (107)
++.+.++|-+|-+-.-..+|||.+.
T Consensus 46 ~~~~~~~lw~Ak~l~~Sa~HPDTge 70 (308)
T PF03820_consen 46 PGLTDDELWKAKKLYDSAFHPDTGE 70 (308)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCCC
Confidence 3469999999999999999999743
No 93
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=21.97 E-value=2.7e+02 Score=19.30 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHhhchHHHHH
Q 033974 71 DCATSRFQEINEAYQEKNGSLILMV 95 (107)
Q Consensus 71 ~~a~~~f~~i~~Ay~~L~d~~~r~~ 95 (107)
++....+..|.++.++|.||.+...
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkEv 86 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKEV 86 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHH
Confidence 3477889999999999999986554
No 94
>CHL00030 rpl23 ribosomal protein L23
Probab=21.07 E-value=85 Score=19.72 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=17.7
Q ss_pred hhcCCCCCCHHHHHHHHHHH
Q 033974 39 ILEVDYDATEEEIRSNYIRL 58 (107)
Q Consensus 39 iLgl~~~a~~~~Ik~ayr~l 58 (107)
++-|++.|+..+||+|...+
T Consensus 23 ~F~V~~~anK~eIK~avE~l 42 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELF 42 (93)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56789999999999999876
No 95
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.96 E-value=1.4e+02 Score=25.32 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=20.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCC
Q 033974 42 VDYDATEEEIRSNYIRLALKWHPDK 66 (107)
Q Consensus 42 l~~~a~~~~Ik~ayr~l~~~~HPDk 66 (107)
++..+..++||.+++++.+.|||.|
T Consensus 397 ~Ps~~~mEqvk~k~~~m~r~YSP~k 421 (651)
T KOG2320|consen 397 TPSDVLMEQVKQKFTAMQRRYSPSK 421 (651)
T ss_pred CCcHHHHHHHHHHHHHHHHhhChHH
Confidence 3445678889999999999999975
Done!