Query 033975
Match_columns 107
No_of_seqs 102 out of 1043
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1752 Glutaredoxin and relat 99.8 4.5E-21 9.7E-26 131.7 7.2 72 36-107 3-74 (104)
2 TIGR02189 GlrX-like_plant Glut 99.8 6.2E-21 1.3E-25 128.7 5.9 67 40-106 1-67 (99)
3 PHA03050 glutaredoxin; Provisi 99.8 8.7E-20 1.9E-24 125.3 7.1 71 36-106 2-75 (108)
4 PRK10824 glutaredoxin-4; Provi 99.7 4.2E-18 9.2E-23 118.7 6.6 71 33-106 1-76 (115)
5 TIGR00365 monothiol glutaredox 99.7 1.2E-17 2.6E-22 112.2 5.7 67 37-106 2-73 (97)
6 cd03028 GRX_PICOT_like Glutare 99.7 7.3E-17 1.6E-21 106.5 5.0 64 40-106 1-69 (90)
7 COG0695 GrxC Glutaredoxin and 99.6 2.8E-16 6.1E-21 102.5 5.7 58 48-106 2-59 (80)
8 PTZ00062 glutaredoxin; Provisi 99.6 6.4E-15 1.4E-19 111.2 6.9 71 33-106 99-174 (204)
9 TIGR02190 GlrX-dom Glutaredoxi 99.6 4E-15 8.6E-20 95.7 4.7 59 44-106 5-63 (79)
10 PF00462 Glutaredoxin: Glutare 99.5 3.7E-15 8E-20 90.8 3.1 54 49-105 1-54 (60)
11 TIGR02180 GRX_euk Glutaredoxin 99.5 1.1E-14 2.4E-19 92.2 5.1 58 49-106 1-60 (84)
12 cd03419 GRX_GRXh_1_2_like Glut 99.5 1.3E-14 2.9E-19 91.8 5.5 59 48-106 1-59 (82)
13 cd03029 GRX_hybridPRX5 Glutare 99.5 2.1E-14 4.5E-19 90.2 4.9 54 48-105 2-55 (72)
14 PRK10638 glutaredoxin 3; Provi 99.5 8.2E-14 1.8E-18 90.0 5.6 57 47-106 2-58 (83)
15 cd03027 GRX_DEP Glutaredoxin ( 99.5 8.3E-14 1.8E-18 87.8 4.8 56 48-106 2-57 (73)
16 cd03418 GRX_GRXb_1_3_like Glut 99.5 1.2E-13 2.7E-18 86.3 5.0 55 48-105 1-56 (75)
17 TIGR02181 GRX_bact Glutaredoxi 99.4 1.2E-13 2.7E-18 87.7 4.4 54 49-105 1-54 (79)
18 PRK12759 bifunctional gluaredo 99.4 2.5E-13 5.4E-18 111.0 6.3 60 47-106 2-66 (410)
19 cd02066 GRX_family Glutaredoxi 99.4 3.5E-13 7.6E-18 81.6 4.2 56 48-106 1-56 (72)
20 PRK10329 glutaredoxin-like pro 99.4 1.5E-12 3.3E-17 84.9 5.6 54 48-105 2-55 (81)
21 TIGR02194 GlrX_NrdH Glutaredox 99.3 1.7E-12 3.7E-17 81.8 5.0 54 49-106 1-54 (72)
22 PRK11200 grxA glutaredoxin 1; 99.3 5.6E-12 1.2E-16 81.6 5.5 57 47-106 1-64 (85)
23 TIGR02183 GRXA Glutaredoxin, G 99.3 3.7E-12 8.1E-17 83.3 4.5 54 49-105 2-62 (86)
24 cd03031 GRX_GRX_like Glutaredo 99.2 2.2E-11 4.8E-16 88.0 5.5 59 48-106 1-66 (147)
25 TIGR02196 GlrX_YruB Glutaredox 99.1 9.8E-11 2.1E-15 71.2 4.4 55 48-105 1-55 (74)
26 TIGR02200 GlrX_actino Glutared 99.1 1.2E-10 2.7E-15 72.2 4.7 55 48-105 1-56 (77)
27 cd02976 NrdH NrdH-redoxin (Nrd 99.1 3.2E-10 6.9E-15 68.9 5.2 56 48-106 1-56 (73)
28 cd02973 TRX_GRX_like Thioredox 99.0 3.8E-10 8.3E-15 69.2 2.8 52 48-106 2-58 (67)
29 cd02977 ArsC_family Arsenate R 98.8 5.9E-09 1.3E-13 69.9 4.9 48 49-96 1-49 (105)
30 cd03036 ArsC_like Arsenate Red 98.8 6.6E-09 1.4E-13 71.0 4.3 47 49-95 1-48 (111)
31 cd03041 GST_N_2GST_N GST_N fam 98.7 3.9E-08 8.5E-13 62.3 4.8 53 49-104 2-54 (77)
32 PRK01655 spxA transcriptional 98.6 3.7E-08 8E-13 69.4 4.6 47 49-95 2-49 (131)
33 COG0278 Glutaredoxin-related p 98.6 1.1E-07 2.4E-12 65.4 6.7 69 34-105 2-76 (105)
34 cd00570 GST_N_family Glutathio 98.6 8E-08 1.7E-12 56.7 5.1 53 50-105 2-54 (71)
35 TIGR01617 arsC_related transcr 98.6 4.5E-08 9.7E-13 67.2 4.1 48 49-96 1-49 (117)
36 cd03032 ArsC_Spx Arsenate Redu 98.5 2.1E-07 4.6E-12 63.7 4.7 47 49-95 2-49 (115)
37 TIGR00411 redox_disulf_1 small 98.5 4E-07 8.6E-12 57.0 5.3 53 48-105 2-58 (82)
38 PRK12559 transcriptional regul 98.5 2.9E-07 6.2E-12 65.1 5.0 46 49-94 2-48 (131)
39 cd03040 GST_N_mPGES2 GST_N fam 98.4 2.8E-07 6E-12 57.8 4.2 51 48-104 1-51 (77)
40 PRK13344 spxA transcriptional 98.4 3.2E-07 6.9E-12 64.9 4.9 47 49-95 2-49 (132)
41 cd03060 GST_N_Omega_like GST_N 98.4 5.7E-07 1.2E-11 55.8 5.4 51 50-104 2-52 (71)
42 cd03051 GST_N_GTT2_like GST_N 98.4 5.4E-07 1.2E-11 55.1 4.2 55 49-104 1-55 (74)
43 cd03059 GST_N_SspA GST_N famil 98.4 1.6E-06 3.6E-11 53.3 5.9 52 49-104 1-52 (73)
44 PHA02125 thioredoxin-like prot 98.4 5.5E-07 1.2E-11 57.1 3.8 49 49-104 2-50 (75)
45 cd03035 ArsC_Yffb Arsenate Red 98.3 8E-07 1.7E-11 60.5 4.4 46 49-94 1-47 (105)
46 cd02975 PfPDO_like_N Pyrococcu 98.3 6.1E-07 1.3E-11 61.1 3.7 60 39-105 15-80 (113)
47 TIGR01295 PedC_BrcD bacterioci 98.3 3.3E-06 7.1E-11 58.6 7.1 67 39-105 15-95 (122)
48 cd03026 AhpF_NTD_C TRX-GRX-lik 98.3 6.5E-07 1.4E-11 59.2 3.2 63 36-105 3-70 (89)
49 cd03045 GST_N_Delta_Epsilon GS 98.3 1.9E-06 4.1E-11 53.2 4.6 55 49-104 1-55 (74)
50 cd03033 ArsC_15kD Arsenate Red 98.2 2.6E-06 5.6E-11 58.8 5.2 48 48-95 1-49 (113)
51 cd03037 GST_N_GRX2 GST_N famil 98.2 2.6E-06 5.7E-11 52.6 4.5 50 50-104 2-51 (71)
52 KOG0911 Glutaredoxin-related p 98.2 4.4E-06 9.5E-11 64.4 6.3 64 39-105 131-199 (227)
53 cd03055 GST_N_Omega GST_N fami 98.2 5.4E-06 1.2E-10 54.0 5.4 53 48-104 18-70 (89)
54 TIGR03140 AhpF alkyl hydropero 98.1 3.1E-06 6.6E-11 70.5 3.4 83 21-105 92-175 (515)
55 TIGR00412 redox_disulf_2 small 98.0 1.5E-05 3.3E-10 50.7 5.3 48 48-104 2-53 (76)
56 PRK15317 alkyl hydroperoxide r 98.0 5.1E-06 1.1E-10 69.1 3.6 83 21-105 91-174 (517)
57 cd03056 GST_N_4 GST_N family, 98.0 1.3E-05 2.8E-10 49.0 4.5 55 49-104 1-55 (73)
58 PF05768 DUF836: Glutaredoxin- 97.9 1E-05 2.2E-10 52.2 3.5 35 48-82 1-39 (81)
59 cd02953 DsbDgamma DsbD gamma f 97.9 3.4E-05 7.5E-10 50.6 5.7 64 41-105 5-77 (104)
60 TIGR02187 GlrX_arch Glutaredox 97.9 2.8E-05 6E-10 58.0 5.9 66 33-105 121-191 (215)
61 cd01659 TRX_superfamily Thiore 97.8 4.2E-05 9.1E-10 42.6 3.6 53 49-105 1-58 (69)
62 PF13417 GST_N_3: Glutathione 97.7 2.3E-05 5.1E-10 49.1 2.7 49 51-103 1-49 (75)
63 cd03053 GST_N_Phi GST_N family 97.7 0.00011 2.4E-09 45.5 5.1 55 49-104 2-56 (76)
64 cd03030 GRX_SH3BGR Glutaredoxi 97.6 7E-05 1.5E-09 50.1 4.0 46 58-106 17-66 (92)
65 TIGR01616 nitro_assoc nitrogen 97.6 0.00013 2.9E-09 51.3 5.2 48 48-95 2-50 (126)
66 cd03034 ArsC_ArsC Arsenate Red 97.6 0.00011 2.5E-09 50.1 4.5 48 49-96 1-49 (112)
67 TIGR00014 arsC arsenate reduct 97.6 0.00012 2.5E-09 50.3 4.5 47 49-95 1-48 (114)
68 PRK10853 putative reductase; P 97.6 0.00015 3.2E-09 50.4 4.9 46 49-94 2-48 (118)
69 cd02947 TRX_family TRX family; 97.6 0.0002 4.3E-09 43.8 5.0 53 46-105 11-68 (93)
70 cd03052 GST_N_GDAP1 GST_N fami 97.5 0.00017 3.6E-09 45.4 4.4 54 49-103 1-54 (73)
71 PRK10026 arsenate reductase; P 97.5 0.00022 4.7E-09 51.4 5.4 49 47-95 2-51 (141)
72 COG1393 ArsC Arsenate reductas 97.5 0.00019 4.2E-09 50.0 5.0 48 48-95 2-50 (117)
73 cd02994 PDI_a_TMX PDIa family, 97.5 0.00031 6.6E-09 45.6 5.6 59 42-105 13-76 (101)
74 cd02985 TRX_CDSP32 TRX family, 97.5 0.00031 6.8E-09 46.5 5.7 53 48-104 18-75 (103)
75 cd02951 SoxW SoxW family; SoxW 97.5 0.00016 3.6E-09 48.9 4.2 66 40-105 6-89 (125)
76 TIGR03143 AhpF_homolog putativ 97.4 0.00038 8.2E-09 58.7 6.0 78 21-105 451-534 (555)
77 cd02949 TRX_NTR TRX domain, no 97.4 0.00019 4.2E-09 46.7 3.3 52 49-105 17-72 (97)
78 cd02962 TMX2 TMX2 family; comp 97.4 0.001 2.3E-08 48.1 7.4 55 49-104 51-112 (152)
79 cd03058 GST_N_Tau GST_N family 97.4 0.00037 8E-09 43.2 4.4 52 49-104 1-53 (74)
80 PHA02278 thioredoxin-like prot 97.3 0.00063 1.4E-08 46.0 5.6 53 48-104 17-76 (103)
81 cd03042 GST_N_Zeta GST_N famil 97.3 0.00041 8.8E-09 42.3 4.2 54 50-104 2-55 (73)
82 cd03049 GST_N_3 GST_N family, 97.3 0.00066 1.4E-08 41.8 5.1 51 50-104 2-54 (73)
83 cd02954 DIM1 Dim1 family; Dim1 97.3 0.00032 6.8E-09 48.8 3.9 50 48-104 17-72 (114)
84 cd03038 GST_N_etherase_LigE GS 97.3 0.00057 1.2E-08 43.4 4.7 48 55-104 14-61 (84)
85 PRK13728 conjugal transfer pro 97.3 0.00065 1.4E-08 50.8 5.6 36 47-82 71-110 (181)
86 cd03061 GST_N_CLIC GST_N famil 97.3 0.00079 1.7E-08 45.1 5.5 46 55-104 20-65 (91)
87 TIGR02187 GlrX_arch Glutaredox 97.3 0.00058 1.3E-08 50.9 5.3 60 40-104 14-81 (215)
88 cd03054 GST_N_Metaxin GST_N fa 97.3 0.00057 1.2E-08 42.1 4.4 39 55-104 14-52 (72)
89 cd02959 ERp19 Endoplasmic reti 97.3 0.0015 3.3E-08 44.7 6.9 36 49-84 23-64 (117)
90 PF00085 Thioredoxin: Thioredo 97.3 0.0008 1.7E-08 42.8 5.1 54 47-105 19-76 (103)
91 PF13098 Thioredoxin_2: Thiore 97.3 0.00014 3.1E-09 47.8 1.6 59 47-105 7-87 (112)
92 cd02998 PDI_a_ERp38 PDIa famil 97.2 0.00068 1.5E-08 43.5 4.6 54 48-105 21-80 (105)
93 PF13409 GST_N_2: Glutathione 97.2 0.00028 6.1E-09 43.9 2.7 49 56-104 1-49 (70)
94 cd03002 PDI_a_MPD1_like PDI fa 97.2 0.00097 2.1E-08 43.5 5.1 54 48-105 21-79 (109)
95 cd02955 SSP411 TRX domain, SSP 97.2 0.0015 3.3E-08 45.7 6.3 65 41-105 9-85 (124)
96 PRK10387 glutaredoxin 2; Provi 97.2 0.00074 1.6E-08 48.9 4.9 50 49-103 1-50 (210)
97 cd02952 TRP14_like Human TRX-r 97.2 0.0013 2.8E-08 45.9 5.8 57 48-104 24-94 (119)
98 cd02961 PDI_a_family Protein D 97.2 0.0019 4.1E-08 40.3 6.1 61 40-105 8-76 (101)
99 cd02993 PDI_a_APS_reductase PD 97.2 0.00097 2.1E-08 44.4 5.0 57 46-105 22-83 (109)
100 KOG3029 Glutathione S-transfer 97.2 0.00079 1.7E-08 54.3 5.1 34 48-81 90-123 (370)
101 cd02999 PDI_a_ERp44_like PDIa 97.1 0.00083 1.8E-08 44.6 4.3 54 48-105 21-77 (100)
102 cd03001 PDI_a_P5 PDIa family, 97.1 0.0034 7.4E-08 40.3 7.0 53 48-105 21-77 (103)
103 cd03044 GST_N_EF1Bgamma GST_N 97.1 0.00087 1.9E-08 41.8 4.0 53 50-104 2-54 (75)
104 PTZ00051 thioredoxin; Provisio 97.0 0.0018 4E-08 41.5 5.1 60 40-104 11-75 (98)
105 PF14595 Thioredoxin_9: Thiore 97.0 0.0008 1.7E-08 47.3 3.4 68 33-104 29-101 (129)
106 cd03048 GST_N_Ure2p_like GST_N 97.0 0.0018 3.8E-08 40.7 4.6 54 49-104 2-55 (81)
107 cd02989 Phd_like_TxnDC9 Phosdu 97.0 0.0016 3.4E-08 44.3 4.6 63 37-104 13-79 (113)
108 PF03960 ArsC: ArsC family; I 97.0 0.0012 2.6E-08 44.6 4.0 45 52-96 1-46 (110)
109 cd02996 PDI_a_ERp44 PDIa famil 97.0 0.00091 2E-08 44.1 3.3 52 48-104 21-82 (108)
110 cd03050 GST_N_Theta GST_N fami 96.9 0.0018 3.9E-08 40.2 4.4 55 49-104 1-55 (76)
111 cd02956 ybbN ybbN protein fami 96.9 0.0046 1E-07 39.5 6.4 53 48-105 15-71 (96)
112 COG0678 AHP1 Peroxiredoxin [Po 96.9 2.1E-05 4.5E-10 57.9 -5.3 38 1-40 125-162 (165)
113 cd03005 PDI_a_ERp46 PDIa famil 96.9 0.0022 4.7E-08 41.1 4.6 54 47-105 18-78 (102)
114 cd03076 GST_N_Pi GST_N family, 96.9 0.0041 8.8E-08 38.7 5.5 53 48-104 1-53 (73)
115 cd03080 GST_N_Metaxin_like GST 96.9 0.0046 9.9E-08 38.5 5.8 44 49-103 2-52 (75)
116 cd03004 PDI_a_ERdj5_C PDIa fam 96.9 0.0018 4E-08 42.1 4.1 53 48-105 22-78 (104)
117 cd03003 PDI_a_ERdj5_N PDIa fam 96.8 0.0047 1E-07 40.1 5.6 53 48-105 21-77 (101)
118 TIGR02182 GRXB Glutaredoxin, G 96.8 0.0021 4.5E-08 47.5 4.3 49 51-104 2-50 (209)
119 cd02997 PDI_a_PDIR PDIa family 96.8 0.0047 1E-07 39.6 5.5 54 48-105 20-80 (104)
120 cd02950 TxlA TRX-like protein 96.8 0.0036 7.8E-08 44.1 5.3 53 48-105 23-81 (142)
121 cd02948 TRX_NDPK TRX domain, T 96.8 0.0029 6.4E-08 41.7 4.6 51 48-104 20-75 (102)
122 COG4545 Glutaredoxin-related p 96.8 0.0018 3.9E-08 42.9 3.4 33 49-81 4-36 (85)
123 PRK09381 trxA thioredoxin; Pro 96.7 0.0059 1.3E-07 40.1 5.9 53 47-104 23-79 (109)
124 TIGR01068 thioredoxin thioredo 96.7 0.0077 1.7E-07 38.0 6.2 54 47-105 16-73 (101)
125 cd02984 TRX_PICOT TRX domain, 96.7 0.0044 9.6E-08 39.5 5.1 53 48-105 17-73 (97)
126 cd03039 GST_N_Sigma_like GST_N 96.7 0.0041 8.8E-08 38.2 4.5 52 50-104 2-53 (72)
127 PRK09481 sspA stringent starva 96.7 0.0047 1E-07 45.3 5.5 53 48-104 10-62 (211)
128 TIGR02740 TraF-like TraF-like 96.7 0.0071 1.5E-07 47.3 6.7 67 39-105 160-234 (271)
129 cd02963 TRX_DnaJ TRX domain, D 96.6 0.0048 1E-07 41.4 4.9 52 47-105 26-84 (111)
130 cd02957 Phd_like Phosducin (Ph 96.6 0.0035 7.5E-08 42.0 4.0 50 49-104 28-80 (113)
131 PF13728 TraF: F plasmid trans 96.6 0.0056 1.2E-07 46.4 5.3 69 37-105 112-188 (215)
132 TIGR02738 TrbB type-F conjugat 96.5 0.0096 2.1E-07 43.0 6.3 38 45-82 50-91 (153)
133 PF13899 Thioredoxin_7: Thiore 96.5 0.0024 5.2E-08 40.6 2.5 52 48-105 20-78 (82)
134 PRK15113 glutathione S-transfe 96.5 0.0075 1.6E-07 44.4 5.4 56 47-103 4-61 (214)
135 cd03047 GST_N_2 GST_N family, 96.4 0.0072 1.6E-07 37.2 4.5 54 50-104 2-55 (73)
136 cd03006 PDI_a_EFP1_N PDIa fami 96.4 0.0037 8.1E-08 42.9 3.3 28 44-71 26-55 (113)
137 cd03000 PDI_a_TMX3 PDIa family 96.4 0.0088 1.9E-07 39.2 4.9 54 47-105 17-77 (104)
138 cd03057 GST_N_Beta GST_N famil 96.4 0.0069 1.5E-07 37.5 4.1 53 50-104 2-54 (77)
139 TIGR01126 pdi_dom protein disu 96.3 0.0027 5.8E-08 40.4 2.1 53 48-105 16-74 (102)
140 PRK00293 dipZ thiol:disulfide 96.2 0.016 3.5E-07 49.6 7.0 55 49-105 478-539 (571)
141 PRK10996 thioredoxin 2; Provis 96.2 0.028 6.1E-07 39.3 6.9 60 40-104 45-110 (139)
142 PF13192 Thioredoxin_3: Thiore 96.2 0.0058 1.3E-07 38.6 3.0 49 48-105 2-54 (76)
143 PTZ00443 Thioredoxin domain-co 96.1 0.052 1.1E-06 41.6 8.5 54 47-105 54-111 (224)
144 cd02995 PDI_a_PDI_a'_C PDIa fa 96.1 0.014 3.1E-07 37.2 4.6 24 48-71 21-44 (104)
145 TIGR00862 O-ClC intracellular 96.0 0.016 3.5E-07 44.6 5.1 47 54-104 16-62 (236)
146 cd03010 TlpA_like_DsbE TlpA-li 95.9 0.016 3.5E-07 38.9 4.3 45 48-92 28-74 (127)
147 PF13905 Thioredoxin_8: Thiore 95.8 0.024 5.3E-07 36.0 4.9 48 48-95 4-57 (95)
148 PTZ00102 disulphide isomerase; 95.8 0.093 2E-06 42.5 9.2 62 39-105 41-111 (477)
149 cd03008 TryX_like_RdCVF Trypar 95.8 0.021 4.6E-07 41.1 4.9 48 48-95 28-87 (146)
150 KOG0910 Thioredoxin-like prote 95.8 0.015 3.3E-07 42.5 4.2 63 35-104 49-119 (150)
151 TIGR02739 TraF type-F conjugat 95.6 0.033 7.1E-07 43.7 5.7 70 36-105 141-218 (256)
152 COG0625 Gst Glutathione S-tran 95.6 0.02 4.4E-07 41.7 4.2 52 50-103 2-53 (211)
153 PLN02309 5'-adenylylsulfate re 95.5 0.067 1.5E-06 45.1 7.6 55 48-105 368-427 (457)
154 PLN02473 glutathione S-transfe 95.5 0.029 6.3E-07 40.8 4.9 54 49-103 3-56 (214)
155 PLN00410 U5 snRNP protein, DIM 95.5 0.02 4.3E-07 41.2 3.9 37 48-84 26-68 (142)
156 PRK13703 conjugal pilus assemb 95.4 0.046 1E-06 42.7 6.0 69 37-105 135-211 (248)
157 cd02987 Phd_like_Phd Phosducin 95.4 0.039 8.5E-07 40.4 5.1 64 35-104 69-139 (175)
158 cd02992 PDI_a_QSOX PDIa family 95.3 0.0099 2.2E-07 40.2 1.7 54 48-105 22-83 (114)
159 TIGR01262 maiA maleylacetoacet 95.3 0.023 4.9E-07 41.1 3.7 54 51-104 2-55 (210)
160 cd02966 TlpA_like_family TlpA- 95.3 0.023 5.1E-07 35.7 3.3 50 45-95 19-75 (116)
161 TIGR01130 ER_PDI_fam protein d 95.3 0.056 1.2E-06 43.1 6.2 61 40-105 11-80 (462)
162 PRK10877 protein disulfide iso 95.2 0.021 4.6E-07 43.5 3.5 32 48-79 110-144 (232)
163 PRK15412 thiol:disulfide inter 95.2 0.03 6.5E-07 40.7 4.0 44 48-91 71-115 (185)
164 COG2143 Thioredoxin-related pr 95.1 0.11 2.5E-06 38.8 6.9 71 35-105 30-120 (182)
165 KOG0907 Thioredoxin [Posttrans 95.1 0.017 3.7E-07 39.4 2.4 51 49-104 25-78 (106)
166 PLN02378 glutathione S-transfe 95.1 0.033 7.1E-07 41.1 4.0 45 55-103 18-62 (213)
167 cd03043 GST_N_1 GST_N family, 95.1 0.046 1E-06 33.9 4.2 49 54-104 7-55 (73)
168 cd03020 DsbA_DsbC_DsbG DsbA fa 95.1 0.032 6.9E-07 40.8 3.8 34 46-79 78-113 (197)
169 cd03009 TryX_like_TryX_NRX Try 95.0 0.067 1.5E-06 36.1 5.0 21 48-68 21-41 (131)
170 cd02964 TryX_like_family Trypa 95.0 0.048 1E-06 37.2 4.3 21 48-68 20-40 (132)
171 cd02986 DLP Dim1 family, Dim1- 95.0 0.035 7.5E-07 38.8 3.6 37 49-85 18-60 (114)
172 cd02960 AGR Anterior Gradient 94.9 0.094 2E-06 37.3 5.8 28 40-67 16-45 (130)
173 cd02965 HyaE HyaE family; HyaE 94.9 0.025 5.4E-07 39.2 2.7 55 45-104 27-87 (111)
174 PRK13972 GSH-dependent disulfi 94.9 0.055 1.2E-06 39.6 4.7 54 49-104 2-55 (215)
175 TIGR00385 dsbE periplasmic pro 94.8 0.044 9.4E-07 39.3 3.9 35 48-82 66-101 (173)
176 KOG2501 Thioredoxin, nucleored 94.8 0.035 7.7E-07 40.8 3.4 48 50-97 38-92 (157)
177 cd03046 GST_N_GTT1_like GST_N 94.7 0.082 1.8E-06 32.2 4.5 53 50-104 2-54 (76)
178 PTZ00062 glutaredoxin; Provisi 94.7 0.074 1.6E-06 40.3 5.0 43 39-81 8-56 (204)
179 KOG3425 Uncharacterized conser 94.7 0.1 2.2E-06 37.2 5.4 67 34-103 13-98 (128)
180 cd03011 TlpA_like_ScsD_MtbDsbE 94.6 0.043 9.4E-07 36.3 3.2 34 46-79 21-54 (123)
181 PLN02817 glutathione dehydroge 94.6 0.063 1.4E-06 41.7 4.5 47 54-104 70-116 (265)
182 cd02988 Phd_like_VIAF Phosduci 94.5 0.059 1.3E-06 40.1 4.2 62 36-105 89-157 (192)
183 TIGR00424 APS_reduc 5'-adenyly 94.5 0.076 1.6E-06 44.8 5.2 52 48-104 374-432 (463)
184 PRK10357 putative glutathione 94.3 0.12 2.6E-06 37.2 5.3 50 50-103 2-51 (202)
185 cd02967 mauD Methylamine utili 94.2 0.055 1.2E-06 35.3 3.0 23 47-69 23-45 (114)
186 PHA03075 glutaredoxin-like pro 94.2 0.073 1.6E-06 37.7 3.7 34 47-80 3-36 (123)
187 PF06110 DUF953: Eukaryotic pr 94.0 0.093 2E-06 36.7 4.0 46 35-80 7-67 (119)
188 PRK11752 putative S-transferas 94.0 0.11 2.3E-06 40.0 4.7 60 43-104 39-104 (264)
189 PTZ00102 disulphide isomerase; 93.9 0.082 1.8E-06 42.8 4.1 23 48-70 378-400 (477)
190 COG3118 Thioredoxin domain-con 93.9 0.07 1.5E-06 43.0 3.5 59 40-105 37-102 (304)
191 PRK03147 thiol-disulfide oxido 93.7 0.087 1.9E-06 36.9 3.4 22 46-67 62-83 (173)
192 KOG0406 Glutathione S-transfer 93.6 0.15 3.2E-06 39.6 4.9 38 46-83 7-44 (231)
193 KOG2824 Glutaredoxin-related p 93.6 0.099 2.1E-06 41.7 3.9 61 46-106 130-197 (281)
194 COG0526 TrxA Thiol-disulfide i 93.4 0.08 1.7E-06 32.3 2.6 30 53-82 40-73 (127)
195 cd02958 UAS UAS family; UAS is 93.4 0.42 9.1E-06 31.8 6.3 53 49-105 21-81 (114)
196 TIGR02661 MauD methylamine deh 93.4 0.12 2.6E-06 37.8 3.9 31 48-78 77-111 (189)
197 COG2999 GrxB Glutaredoxin 2 [P 93.4 0.086 1.9E-06 40.2 3.1 37 50-86 2-38 (215)
198 PRK11657 dsbG disulfide isomer 92.7 0.11 2.3E-06 40.2 2.9 31 48-78 120-154 (251)
199 PF00578 AhpC-TSA: AhpC/TSA fa 92.4 0.12 2.6E-06 33.9 2.5 27 41-67 21-48 (124)
200 PF08534 Redoxin: Redoxin; In 92.3 0.34 7.4E-06 33.0 4.7 44 48-94 31-82 (146)
201 PLN02395 glutathione S-transfe 92.1 0.33 7.2E-06 35.1 4.7 55 48-104 2-56 (215)
202 smart00594 UAS UAS domain. 92.0 0.6 1.3E-05 31.8 5.6 72 29-104 9-90 (122)
203 cd03012 TlpA_like_DipZ_like Tl 91.9 0.39 8.5E-06 32.3 4.6 33 48-80 26-63 (126)
204 cd03065 PDI_b_Calsequestrin_N 91.9 0.15 3.2E-06 35.5 2.5 50 48-104 29-91 (120)
205 cd03023 DsbA_Com1_like DsbA fa 91.8 0.16 3.5E-06 34.2 2.6 24 46-69 6-29 (154)
206 PTZ00256 glutathione peroxidas 91.7 0.34 7.4E-06 35.2 4.4 15 50-64 46-60 (183)
207 cd03007 PDI_a_ERp29_N PDIa fam 91.6 0.62 1.3E-05 32.4 5.4 64 40-105 11-85 (116)
208 cd02970 PRX_like2 Peroxiredoxi 91.6 0.25 5.5E-06 33.3 3.4 21 48-68 26-47 (149)
209 TIGR01130 ER_PDI_fam protein d 91.5 0.36 7.9E-06 38.5 4.7 22 48-69 367-388 (462)
210 cd03077 GST_N_Alpha GST_N fami 91.4 0.51 1.1E-05 29.6 4.4 33 49-81 2-34 (79)
211 cd02982 PDI_b'_family Protein 91.4 0.35 7.6E-06 30.9 3.7 25 46-70 13-37 (103)
212 cd02972 DsbA_family DsbA famil 91.4 0.18 3.9E-06 30.9 2.3 22 49-70 1-22 (98)
213 cd00340 GSH_Peroxidase Glutath 91.0 0.26 5.7E-06 34.4 3.1 20 48-68 25-44 (152)
214 cd02968 SCO SCO (an acronym fo 90.3 0.42 9.1E-06 32.2 3.5 49 47-95 24-84 (142)
215 PTZ00056 glutathione peroxidas 90.1 0.4 8.8E-06 35.6 3.6 17 48-64 42-58 (199)
216 PF04908 SH3BGR: SH3-binding, 90.1 0.35 7.6E-06 32.9 2.9 41 49-89 3-49 (99)
217 PLN02412 probable glutathione 89.6 0.74 1.6E-05 33.0 4.5 15 48-62 32-46 (167)
218 PF03190 Thioredox_DsbH: Prote 89.5 0.17 3.7E-06 37.3 1.1 55 50-104 42-106 (163)
219 cd03019 DsbA_DsbA DsbA family, 89.2 0.38 8.2E-06 33.6 2.7 24 46-69 16-39 (178)
220 TIGR02540 gpx7 putative glutat 88.3 1.2 2.5E-05 31.1 4.6 16 49-64 26-41 (153)
221 cd03015 PRX_Typ2cys Peroxiredo 88.2 0.61 1.3E-05 33.2 3.3 23 46-68 29-53 (173)
222 PF13462 Thioredoxin_4: Thiore 88.1 0.62 1.4E-05 31.9 3.1 33 48-80 15-55 (162)
223 KOG0190 Protein disulfide isom 87.7 0.76 1.7E-05 39.3 4.0 65 35-104 30-103 (493)
224 KOG0867 Glutathione S-transfer 87.0 1.2 2.6E-05 33.6 4.3 56 48-104 2-57 (226)
225 PRK13190 putative peroxiredoxi 86.9 0.57 1.2E-05 34.7 2.5 58 46-103 27-94 (202)
226 PLN02399 phospholipid hydroper 86.2 1.4 3.1E-05 34.0 4.5 19 46-64 100-118 (236)
227 cd03016 PRX_1cys Peroxiredoxin 85.9 0.76 1.7E-05 34.0 2.7 32 51-82 32-70 (203)
228 COG5429 Uncharacterized secret 85.6 0.81 1.7E-05 36.1 2.8 55 49-103 45-114 (261)
229 cd03018 PRX_AhpE_like Peroxire 85.0 1.1 2.3E-05 30.5 3.0 19 49-67 32-51 (149)
230 PRK10542 glutathionine S-trans 84.9 1.4 3E-05 31.4 3.7 52 51-103 3-54 (201)
231 TIGR03137 AhpC peroxiredoxin. 84.6 1.4 2.9E-05 32.2 3.5 37 45-81 30-75 (187)
232 PF02798 GST_N: Glutathione S- 84.5 1.4 3.1E-05 27.4 3.2 53 48-103 2-55 (76)
233 cd03017 PRX_BCP Peroxiredoxin 84.5 1.2 2.5E-05 29.9 2.9 15 49-63 27-42 (140)
234 PLN02919 haloacid dehalogenase 84.1 1.2 2.6E-05 41.0 3.7 22 48-69 423-444 (1057)
235 cd02969 PRX_like1 Peroxiredoxi 84.1 1.9 4.1E-05 30.4 4.0 49 46-94 26-86 (171)
236 KOG1422 Intracellular Cl- chan 83.9 3.4 7.4E-05 32.0 5.6 43 56-102 20-62 (221)
237 KOG0191 Thioredoxin/protein di 83.9 1.8 3.9E-05 34.9 4.2 56 45-105 162-223 (383)
238 PRK13599 putative peroxiredoxi 82.8 1.3 2.7E-05 33.5 2.8 44 50-93 34-84 (215)
239 cd02971 PRX_family Peroxiredox 82.1 2.2 4.7E-05 28.5 3.5 21 46-66 22-44 (140)
240 KOG0868 Glutathione S-transfer 82.0 1.3 2.8E-05 33.9 2.6 51 52-104 11-61 (217)
241 PRK14018 trifunctional thiored 80.6 3.2 6.9E-05 35.7 4.8 22 49-70 60-81 (521)
242 PF06764 DUF1223: Protein of u 80.3 1.7 3.7E-05 32.9 2.7 53 49-101 2-69 (202)
243 TIGR03759 conj_TIGR03759 integ 79.1 6.3 0.00014 30.2 5.4 45 45-89 108-152 (200)
244 KOG0190 Protein disulfide isom 78.8 1.3 2.8E-05 38.0 1.8 27 48-74 387-413 (493)
245 PF01323 DSBA: DSBA-like thior 78.3 2.4 5.2E-05 29.9 2.8 33 48-80 1-38 (193)
246 TIGR01626 ytfJ_HI0045 conserve 77.9 2.6 5.7E-05 31.4 3.1 43 40-82 54-105 (184)
247 cd03014 PRX_Atyp2cys Peroxired 77.9 2.8 6.1E-05 28.4 3.0 22 47-68 28-50 (143)
248 PRK13189 peroxiredoxin; Provis 77.6 2.4 5.1E-05 32.1 2.8 38 45-82 34-80 (222)
249 PRK09437 bcp thioredoxin-depen 76.9 2.6 5.7E-05 29.0 2.7 48 45-95 29-85 (154)
250 TIGR03143 AhpF_homolog putativ 75.6 4 8.8E-05 34.5 3.9 38 34-71 351-392 (555)
251 PF03227 GILT: Gamma interfero 75.2 2.9 6.2E-05 28.1 2.4 38 48-85 2-43 (108)
252 PRK13191 putative peroxiredoxi 75.2 3.2 6.9E-05 31.3 2.9 43 51-93 40-89 (215)
253 KOG0191 Thioredoxin/protein di 74.2 6.3 0.00014 31.7 4.6 25 45-69 47-71 (383)
254 COG4232 Thiol:disulfide interc 74.1 11 0.00024 33.0 6.2 65 39-104 464-538 (569)
255 cd03075 GST_N_Mu GST_N family, 73.0 15 0.00033 23.0 5.3 30 54-83 6-35 (82)
256 KOG0908 Thioredoxin-like prote 72.8 6.8 0.00015 31.4 4.3 61 36-103 9-77 (288)
257 PTZ00137 2-Cys peroxiredoxin; 70.7 6.8 0.00015 30.7 3.9 41 41-81 93-142 (261)
258 KOG4277 Uncharacterized conser 70.5 2 4.4E-05 35.5 0.9 55 48-104 46-104 (468)
259 PRK10382 alkyl hydroperoxide r 68.1 7.9 0.00017 28.6 3.6 9 54-62 41-49 (187)
260 PF04134 DUF393: Protein of un 67.8 10 0.00022 24.9 3.8 29 51-79 1-31 (114)
261 PTZ00057 glutathione s-transfe 67.7 23 0.00049 25.6 5.9 55 48-103 4-61 (205)
262 KOG4244 Failed axon connection 66.0 5.2 0.00011 32.0 2.4 44 57-100 61-122 (281)
263 PTZ00253 tryparedoxin peroxida 65.5 7.7 0.00017 28.4 3.1 29 54-82 46-81 (199)
264 PF09822 ABC_transp_aux: ABC-t 63.5 12 0.00025 28.5 3.9 53 33-85 13-76 (271)
265 cd03025 DsbA_FrnE_like DsbA fa 62.2 5.7 0.00012 28.0 1.8 21 48-68 2-22 (193)
266 COG2761 FrnE Predicted dithiol 62.0 4.2 9E-05 31.6 1.1 50 48-97 7-68 (225)
267 PRK15000 peroxidase; Provision 60.6 9.3 0.0002 28.3 2.8 20 45-64 33-54 (200)
268 cd03022 DsbA_HCCA_Iso DsbA fam 59.4 9.1 0.0002 26.9 2.5 21 49-69 1-21 (192)
269 PRK10954 periplasmic protein d 58.2 6.8 0.00015 28.9 1.7 21 46-66 38-58 (207)
270 COG1651 DsbG Protein-disulfide 58.1 14 0.0003 27.4 3.4 24 46-69 85-108 (244)
271 COG3019 Predicted metal-bindin 57.7 19 0.00041 26.4 3.8 35 46-80 25-59 (149)
272 COG1331 Highly conserved prote 56.4 22 0.00047 31.8 4.7 66 38-103 35-111 (667)
273 cd02974 AhpF_NTD_N Alkyl hydro 56.3 22 0.00047 23.6 3.7 36 35-71 5-44 (94)
274 TIGR01689 EcbF-BcbF capsule bi 56.0 43 0.00093 23.4 5.4 50 32-81 25-87 (126)
275 KOG1734 Predicted RING-contain 56.0 5.4 0.00012 32.3 0.9 19 50-68 266-287 (328)
276 KOG0912 Thiol-disulfide isomer 55.9 14 0.0003 30.6 3.2 30 40-69 6-37 (375)
277 TIGR03865 PQQ_CXXCW PQQ-depend 55.9 20 0.00043 25.7 3.8 29 45-73 115-143 (162)
278 cd03021 DsbA_GSTK DsbA family, 55.7 15 0.00032 26.9 3.2 34 47-80 1-40 (209)
279 cd03078 GST_N_Metaxin1_like GS 55.6 16 0.00036 22.7 2.9 24 55-78 14-37 (73)
280 cd04336 YeaK YeaK is an unchar 55.3 23 0.00049 24.6 3.9 32 61-92 2-33 (153)
281 COG1651 DsbG Protein-disulfide 54.6 11 0.00025 27.9 2.4 24 48-71 121-144 (244)
282 PRK00522 tpx lipid hydroperoxi 54.3 17 0.00036 25.8 3.2 35 47-82 46-85 (167)
283 PF15061 DUF4538: Domain of un 52.2 29 0.00063 21.6 3.5 34 4-37 3-37 (58)
284 cd03079 GST_N_Metaxin2 GST_N f 51.8 24 0.00052 22.4 3.3 25 55-79 15-39 (74)
285 PF00731 AIRC: AIR carboxylase 50.6 18 0.0004 26.2 2.9 42 55-96 11-52 (150)
286 TIGR03190 benz_CoA_bzdN benzoy 50.2 45 0.00098 27.0 5.4 56 34-89 299-361 (377)
287 cd03024 DsbA_FrnE DsbA family, 49.9 10 0.00022 26.9 1.5 20 49-68 1-20 (201)
288 PRK10606 btuE putative glutath 48.6 14 0.00031 27.2 2.1 17 46-62 26-42 (183)
289 COG3634 AhpF Alkyl hydroperoxi 48.2 74 0.0016 27.2 6.3 81 21-106 91-175 (520)
290 cd03129 GAT1_Peptidase_E_like 48.2 62 0.0013 23.6 5.5 66 30-95 12-81 (210)
291 KOG1731 FAD-dependent sulfhydr 48.0 5.6 0.00012 34.9 -0.2 59 48-106 60-122 (606)
292 PF11287 DUF3088: Protein of u 47.3 19 0.00041 25.2 2.4 39 56-94 23-64 (112)
293 PF04790 Sarcoglycan_1: Sarcog 45.7 19 0.00042 28.3 2.5 25 2-26 5-29 (264)
294 COG2608 CopZ Copper chaperone 45.1 31 0.00066 21.4 2.9 16 56-71 12-28 (71)
295 cd04335 PrdX_deacylase This CD 44.7 41 0.00088 23.5 3.9 31 62-92 3-33 (156)
296 TIGR00011 YbaK_EbsC ybaK/ebsC 44.5 37 0.00081 23.6 3.6 32 62-93 2-36 (152)
297 COG1631 RPL42A Ribosomal prote 44.4 5.9 0.00013 26.9 -0.5 9 54-62 8-16 (94)
298 COG4837 Uncharacterized protei 41.8 13 0.00028 25.6 0.9 44 45-88 3-61 (106)
299 PF07728 AAA_5: AAA domain (dy 41.0 93 0.002 20.6 5.1 46 48-93 1-46 (139)
300 cd04911 ACT_AKiii-YclM-BS_1 AC 40.8 31 0.00067 22.3 2.5 19 57-75 15-33 (76)
301 PF00403 HMA: Heavy-metal-asso 40.3 35 0.00076 19.8 2.6 39 56-94 8-58 (62)
302 COG0320 LipA Lipoate synthase 40.2 29 0.00064 28.1 2.8 45 56-100 83-150 (306)
303 PRK11709 putative L-ascorbate 40.1 42 0.0009 27.3 3.7 59 47-105 218-283 (355)
304 PRK15317 alkyl hydroperoxide r 39.8 42 0.0009 28.1 3.8 37 34-71 4-44 (517)
305 cd03145 GAT1_cyanophycinase Ty 39.6 73 0.0016 23.7 4.7 63 33-95 15-84 (217)
306 KOG0913 Thiol-disulfide isomer 39.4 12 0.00025 29.6 0.4 41 43-83 37-84 (248)
307 PHA03005 sulfhydryl oxidase; P 39.1 1.2E+02 0.0026 20.6 5.2 58 1-72 1-59 (96)
308 PF06053 DUF929: Domain of unk 38.5 21 0.00045 28.0 1.7 30 42-71 53-88 (249)
309 cd08183 Fe-ADH2 Iron-containin 38.5 1.1E+02 0.0023 24.6 5.8 56 36-93 14-69 (374)
310 cd04333 ProX_deacylase This CD 37.3 56 0.0012 22.6 3.6 33 61-93 2-35 (148)
311 PF03487 IL13: Interleukin-13; 36.8 23 0.00051 20.6 1.3 22 23-44 16-37 (43)
312 cd01520 RHOD_YbbB Member of th 36.4 1.2E+02 0.0026 20.3 5.1 37 42-80 82-118 (128)
313 cd03013 PRX5_like Peroxiredoxi 36.3 35 0.00076 24.0 2.5 40 41-80 24-74 (155)
314 PRK06703 flavodoxin; Provision 35.4 98 0.0021 21.2 4.6 51 34-84 66-128 (151)
315 PRK05569 flavodoxin; Provision 35.4 1.4E+02 0.003 20.0 5.9 69 22-90 52-131 (141)
316 TIGR01162 purE phosphoribosyla 35.2 35 0.00077 25.0 2.4 46 49-94 3-48 (156)
317 KOG1014 17 beta-hydroxysteroid 34.8 83 0.0018 25.6 4.6 51 35-85 61-112 (312)
318 PF14437 MafB19-deam: MafB19-l 34.7 1.3E+02 0.0028 21.9 5.2 34 46-79 99-135 (146)
319 PF11009 DUF2847: Protein of u 34.7 92 0.002 21.3 4.2 49 44-92 17-73 (105)
320 PF07315 DUF1462: Protein of u 34.6 25 0.00054 23.9 1.3 15 72-86 38-52 (93)
321 TIGR02263 benz_CoA_red_C benzo 34.6 70 0.0015 26.0 4.2 46 36-81 309-361 (380)
322 PF00763 THF_DHG_CYH: Tetrahyd 33.9 21 0.00045 24.3 0.9 66 34-99 14-86 (117)
323 PRK06756 flavodoxin; Provision 33.8 78 0.0017 21.6 3.9 68 22-89 53-134 (148)
324 PF01799 Fer2_2: [2Fe-2S] bind 33.1 45 0.00097 21.4 2.3 30 56-95 25-59 (75)
325 smart00189 IL2 Interleukin-2 f 32.8 1E+02 0.0022 22.5 4.3 36 8-44 2-38 (154)
326 cd02123 PA_C_RZF_like PA_C-RZF 32.5 82 0.0018 22.4 3.9 25 45-69 66-90 (153)
327 PRK07308 flavodoxin; Validated 32.4 73 0.0016 21.8 3.5 67 23-89 53-133 (146)
328 TIGR03140 AhpF alkyl hydropero 32.3 65 0.0014 27.0 3.8 37 34-71 4-44 (515)
329 TIGR02069 cyanophycinase cyano 31.6 96 0.0021 23.9 4.4 75 22-96 3-84 (250)
330 cd00002 YbaK_deacylase This CD 30.9 55 0.0012 22.7 2.7 22 62-83 3-24 (152)
331 PRK14181 bifunctional 5,10-met 30.1 52 0.0011 26.3 2.7 67 34-100 14-84 (287)
332 KOG2965 Arginase [Amino acid t 30.0 25 0.00055 28.5 0.9 64 39-104 172-236 (318)
333 PF01522 Polysacc_deac_1: Poly 30.0 38 0.00081 21.8 1.7 37 37-74 86-122 (123)
334 PRK14186 bifunctional 5,10-met 30.0 1.5E+02 0.0033 23.8 5.3 66 34-99 16-89 (297)
335 PF05673 DUF815: Protein of un 29.8 1E+02 0.0022 24.3 4.3 58 35-93 42-102 (249)
336 PRK09271 flavodoxin; Provision 29.5 1.5E+02 0.0033 20.7 4.8 62 21-82 54-126 (160)
337 PRK14173 bifunctional 5,10-met 29.0 2E+02 0.0044 22.9 5.9 66 34-99 17-86 (287)
338 PF03690 UPF0160: Uncharacteri 29.0 1.8E+02 0.0039 23.6 5.6 61 45-106 210-275 (318)
339 PF13743 Thioredoxin_5: Thiore 28.6 57 0.0012 23.5 2.6 21 51-71 2-22 (176)
340 TIGR03191 benz_CoA_bzdO benzoy 28.5 1.3E+02 0.0027 25.2 4.8 48 36-83 349-403 (430)
341 PF15616 TerY-C: TerY-C metal 28.4 17 0.00037 26.0 -0.2 30 34-63 54-86 (131)
342 cd02978 KaiB_like KaiB-like fa 28.1 53 0.0012 21.0 2.0 53 50-102 5-64 (72)
343 KOG4023 Uncharacterized conser 27.3 98 0.0021 21.5 3.3 39 48-86 3-47 (108)
344 TIGR03439 methyl_EasF probable 27.0 66 0.0014 25.9 2.9 83 8-96 32-125 (319)
345 PF03470 zf-XS: XS zinc finger 27.0 17 0.00037 21.3 -0.4 6 57-62 1-6 (43)
346 PF07287 DUF1446: Protein of u 26.4 1.3E+02 0.0029 24.8 4.5 82 11-93 27-120 (362)
347 COG5494 Predicted thioredoxin/ 26.0 67 0.0015 25.3 2.6 53 46-105 10-64 (265)
348 COG3011 Predicted thiol-disulf 25.9 1.9E+02 0.0041 20.8 4.7 43 45-88 6-50 (137)
349 COG4097 Predicted ferric reduc 25.9 95 0.0021 26.4 3.6 62 46-107 343-407 (438)
350 PF02780 Transketolase_C: Tran 25.7 1.3E+02 0.0027 20.0 3.7 35 46-80 9-44 (124)
351 PRK14189 bifunctional 5,10-met 25.7 91 0.002 24.9 3.4 67 34-100 17-90 (285)
352 PRK14166 bifunctional 5,10-met 25.2 1.7E+02 0.0037 23.3 4.8 67 34-100 15-88 (282)
353 cd02127 PA_hPAP21_like PA_hPAP 24.8 1.8E+02 0.004 19.7 4.4 33 46-79 34-67 (118)
354 PRK04195 replication factor C 24.6 2.5E+02 0.0055 23.4 6.0 48 46-93 39-86 (482)
355 PF06508 QueC: Queuosine biosy 24.1 40 0.00087 25.2 1.1 22 59-80 40-62 (209)
356 TIGR03297 Ppyr-DeCO2ase phosph 24.0 46 0.001 27.1 1.5 68 27-94 53-138 (361)
357 PRK14180 bifunctional 5,10-met 23.9 98 0.0021 24.7 3.3 67 34-100 15-89 (282)
358 COG2115 XylA Xylose isomerase 23.4 77 0.0017 26.6 2.6 31 62-92 86-117 (438)
359 PF09413 DUF2007: Domain of un 23.4 82 0.0018 18.7 2.2 29 51-79 3-31 (67)
360 cd02991 UAS_ETEA UAS family, E 22.9 1.6E+02 0.0034 19.9 3.8 42 56-104 32-80 (116)
361 PRK14190 bifunctional 5,10-met 22.8 1.1E+02 0.0024 24.4 3.3 67 34-100 17-90 (284)
362 PRK10670 hypothetical protein; 22.8 1.2E+02 0.0027 21.5 3.4 21 62-82 3-23 (159)
363 PRK14174 bifunctional 5,10-met 22.7 1.1E+02 0.0023 24.6 3.2 67 33-99 14-88 (295)
364 cd01521 RHOD_PspE2 Member of t 22.7 2.1E+02 0.0045 18.4 4.2 33 41-73 59-92 (110)
365 PF11536 DUF3226: Protein of u 22.4 1.8E+02 0.0039 22.9 4.4 51 47-97 55-113 (239)
366 PRK14191 bifunctional 5,10-met 22.0 1.1E+02 0.0024 24.4 3.3 66 34-99 15-88 (285)
367 PRK02228 V-type ATP synthase s 21.9 2.5E+02 0.0053 18.5 5.8 68 31-98 27-96 (100)
368 PRK14167 bifunctional 5,10-met 21.8 1.1E+02 0.0024 24.5 3.2 45 56-100 45-89 (297)
369 PF04805 Pox_E10: E10-like pro 21.6 87 0.0019 20.2 2.1 17 56-72 17-34 (70)
370 PF11023 DUF2614: Protein of u 21.5 25 0.00055 24.7 -0.4 55 35-93 54-111 (114)
371 cd01444 GlpE_ST GlpE sulfurtra 21.3 2.1E+02 0.0045 17.4 4.9 36 37-73 47-82 (96)
372 TIGR01754 flav_RNR ribonucleot 21.1 2.1E+02 0.0045 19.4 4.1 71 22-92 54-136 (140)
373 PRK14175 bifunctional 5,10-met 21.0 1.3E+02 0.0028 24.0 3.4 67 34-100 17-90 (286)
374 PF08874 DUF1835: Domain of un 20.9 2.6E+02 0.0057 18.4 5.4 45 35-80 75-123 (124)
375 TIGR00778 ahpD_dom alkylhydrop 20.9 1.2E+02 0.0026 16.7 2.5 20 55-74 19-39 (50)
376 PRK10792 bifunctional 5,10-met 20.8 1.3E+02 0.0027 24.1 3.3 67 34-100 17-91 (285)
377 cd08551 Fe-ADH iron-containing 20.8 1.7E+02 0.0037 23.3 4.1 38 57-94 37-75 (370)
378 TIGR01753 flav_short flavodoxi 20.7 2.6E+02 0.0056 18.3 5.1 57 34-90 64-131 (140)
379 PRK14188 bifunctional 5,10-met 20.4 1.3E+02 0.0029 24.0 3.4 67 34-100 16-90 (296)
380 PRK14177 bifunctional 5,10-met 20.3 1.3E+02 0.0027 24.1 3.2 66 35-100 18-91 (284)
No 1
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.5e-21 Score=131.71 Aligned_cols=72 Identities=36% Similarity=0.457 Sum_probs=68.8
Q ss_pred HHHHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccccC
Q 033975 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWWC 107 (107)
Q Consensus 36 ~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~~ 107 (107)
..+++++++++++|+||||+|||||+++|++|.++++++.++|||.++++.++|++|.++||++++|.+|-+
T Consensus 3 ~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~ 74 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIG 74 (104)
T ss_pred HHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEEC
Confidence 456799999999999999999999999999999999999999999999999999999999999999999854
No 2
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.83 E-value=6.2e-21 Score=128.65 Aligned_cols=67 Identities=24% Similarity=0.271 Sum_probs=64.2
Q ss_pred HHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 40 v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
|+++|++++|+||++++||||.++|++|+++|++|.++|||.++++.++++++.++||+.++|++|.
T Consensus 1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence 4688999999999999999999999999999999999999999999999999999999999999984
No 3
>PHA03050 glutaredoxin; Provisional
Probab=99.80 E-value=8.7e-20 Score=125.28 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=66.9
Q ss_pred HHHHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCC---CCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 36 ~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lgv---~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
++.+++++|++++|+||+++|||||.++|++|+++++ +|+++|||..+++.++++.|.+.||++++|++|-
T Consensus 2 ~~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 2 AEEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred hHHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 4689999999999999999999999999999999999 7999999988888999999999999999999973
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=99.74 E-value=4.2e-18 Score=118.69 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=65.3
Q ss_pred chhHHHHHHhhhcCCCEEEEecC-----CChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 33 DHSVSAFVQNSIFSNKIVIFSKS-----YCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 33 ~~~~k~~v~~~i~~~~Vvvfsks-----~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
+++++++|+++|++++|+||+|+ +||||.+||++|+++|++|.++||+.+ .++++.|.+.||++++|++|-
T Consensus 1 ~~~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d---~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 1 MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN---PDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred CchHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC---HHHHHHHHHHhCCCCCCeEEE
Confidence 35688999999999999999995 999999999999999999999999865 468999999999999999984
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.71 E-value=1.2e-17 Score=112.19 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=61.4
Q ss_pred HHHHHhhhcCCCEEEEec-----CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 37 SAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 37 k~~v~~~i~~~~Vvvfsk-----s~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
+++++.++++++|+||++ ++||||.++|++|+++|++|.++||+.+ .++++.|.++||+.++|++|.
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~---~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED---PEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC---HHHHHHHHHHhCCCCCCEEEE
Confidence 478999999999999999 8899999999999999999999999744 578888999999999999984
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.67 E-value=7.3e-17 Score=106.49 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=58.4
Q ss_pred HHhhhcCCCEEEEec-----CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 40 VQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 40 v~~~i~~~~Vvvfsk-----s~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
++++|++++|+||++ ++||||.++|++|+++|++|..+||+.+ .++++.|.+.||++++|++|-
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED---EEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCEEEE
Confidence 467899999999999 5999999999999999999999999754 678999999999999999973
No 7
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.8e-16 Score=102.47 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=53.6
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
.|+||++++||||.++|++|+++|++|.+++++.++. .+.++++.+.+|++++|++|-
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEE
Confidence 6899999999999999999999999999999987765 788889999999999999873
No 8
>PTZ00062 glutaredoxin; Provisional
Probab=99.56 E-value=6.4e-15 Score=111.22 Aligned_cols=71 Identities=10% Similarity=0.106 Sum_probs=64.7
Q ss_pred chhHHHHHHhhhcCCCEEEEec-----CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 33 DHSVSAFVQNSIFSNKIVIFSK-----SYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 33 ~~~~k~~v~~~i~~~~Vvvfsk-----s~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
+++..++++.+|++++|+||+| |+||||++++++|+++|++|..+||+.+ .++++.|.++||+.++|++|-
T Consensus 99 ~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d---~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 99 SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED---PDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC---HHHHHHHHHHhCCCCCCeEEE
Confidence 4568999999999999999999 6899999999999999999999999855 567888999999999999973
No 9
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.56 E-value=4e-15 Score=95.68 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=51.2
Q ss_pred hcCCCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 44 IFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 44 i~~~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
-++++|+||++++||||.++|++|+++|++|+.+||+.++++.+ +...+|..++|+++.
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~----~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRS----LRAVTGATTVPQVFI 63 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHH----HHHHHCCCCcCeEEE
Confidence 36789999999999999999999999999999999987765543 456799999999873
No 10
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.54 E-value=3.7e-15 Score=90.78 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=49.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
|++|++++||+|.+++++|+++|++|+++||+.++ +.++.|.+.+|..++|+++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~---~~~~~l~~~~g~~~~P~v~ 54 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE---EAREELKELSGVRTVPQVF 54 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH---HHHHHHHHHHSSSSSSEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch---hHHHHHHHHcCCCccCEEE
Confidence 78999999999999999999999999999999885 6677777777999999987
No 11
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.54 E-value=1.1e-14 Score=92.20 Aligned_cols=58 Identities=38% Similarity=0.474 Sum_probs=54.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC--CEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQ--PFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~--~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
|++|+++|||||.+++++|++++++ |..+++|.+++..++++.+.+.+|..++|+++-
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 6899999999999999999999999 999999999888999999999999999999873
No 12
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.54 E-value=1.3e-14 Score=91.81 Aligned_cols=59 Identities=36% Similarity=0.520 Sum_probs=55.7
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
+|++|++++||+|.+++++|++++++|..++++.++++.++++.+++.+|..++|++|.
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 58999999999999999999999999999999999888889999999999999999874
No 13
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.51 E-value=2.1e-14 Score=90.17 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=47.8
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
+|+||++++||||.+|+++|+++|++|+.+|++.+++. +.+...+|..++|++|
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~----~~~~~~~g~~~vP~if 55 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITG----RSLRAVTGAMTVPQVF 55 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhH----HHHHHHhCCCCcCeEE
Confidence 68999999999999999999999999999999876643 3466778999999986
No 14
>PRK10638 glutaredoxin 3; Provisional
Probab=99.47 E-value=8.2e-14 Score=90.00 Aligned_cols=57 Identities=16% Similarity=0.298 Sum_probs=50.3
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
.+|++|++++||||++++++|+++|++|.++|||.++ +.++.+.+.+|..++|+++.
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~---~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA---AKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH---HHHHHHHHHhCCCCcCEEEE
Confidence 4799999999999999999999999999999998653 45566888999999999863
No 15
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.46 E-value=8.3e-14 Score=87.76 Aligned_cols=56 Identities=11% Similarity=0.197 Sum_probs=50.1
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
+|++|++++||+|++|+++|+++|++|+.+||+.++ +..+.+.+++|..++|++|.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~---~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFP---ERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHHhCCCCcCEEEE
Confidence 689999999999999999999999999999998664 45667888899999999874
No 16
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.45 E-value=1.2e-13 Score=86.34 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=46.5
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCC-Cccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLC-EWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~-s~P~~~ 105 (107)
+|++|++++||||.+++++|++++++|.++||+.+ .+.++.+.+.+|.. ++|++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~---~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD---PALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCccCEEE
Confidence 58999999999999999999999999999999865 34445565666666 999987
No 17
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.44 E-value=1.2e-13 Score=87.72 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=47.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
|+||++++||||.+++++|+++|++|+.+||+.++ +.++.+.+.+|..++|+++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~---~~~~~~~~~~g~~~vP~i~ 54 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP---ALRDEMMQRSGRRTVPQIF 54 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH---HHHHHHHHHhCCCCcCEEE
Confidence 68999999999999999999999999999998664 4555677789999999986
No 18
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.42 E-value=2.5e-13 Score=110.96 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=52.6
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhc-----ccCCCCCCCcccccc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRP-----THRPTNLCEWRTHWW 106 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~-----L~~~tg~~s~P~~~~ 106 (107)
.+|+||++++||||.++|++|+++|++|+++|||++++..++++. |.+.+|++++|++|.
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 479999999999999999999999999999999988776666555 445699999999975
No 19
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.40 E-value=3.5e-13 Score=81.57 Aligned_cols=56 Identities=27% Similarity=0.357 Sum_probs=49.5
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
+|++|++++||+|++++.+|++++++|..+|++.+++ ..+.|.+.+|..++|+++-
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~---~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE---LREELKELSGWPTVPQIFI 56 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH---HHHHHHHHhCCCCcCEEEE
Confidence 5899999999999999999999999999999976643 6677888899999999863
No 20
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.36 E-value=1.5e-12 Score=84.91 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=45.5
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
+|++|++++||||.++|++|+++|++|+++||+.+++..+ .+.. .|..++|++.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~---~~~~-~g~~~vPvv~ 55 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAE---TLRA-QGFRQLPVVI 55 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHH---HHHH-cCCCCcCEEE
Confidence 6999999999999999999999999999999987654333 3333 5999999975
No 21
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.34 E-value=1.7e-12 Score=81.75 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=45.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
|+||++++||+|++++++|+++|++|+.+||+.+++. .+.+.. +|..++|+++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~---~~~~~~-~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEA---IDYVKA-QGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHH---HHHHHH-cCCcccCEEEE
Confidence 5799999999999999999999999999999876543 334444 48899999864
No 22
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.29 E-value=5.6e-12 Score=81.58 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=44.7
Q ss_pred CCEEEEecCCChhHHHHHHHHHh-----cCCCCEEEEccCCCCchHhhhcccCCCCC--CCcccccc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFAD-----LNEQPFVVELDLRVYSFGSGRPTHRPTNL--CEWRTHWW 106 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~-----lgv~~~vidID~~~d~~~i~~~L~~~tg~--~s~P~~~~ 106 (107)
++|+||++++||||.+|+++|++ .+++|..+||+.+.. +. +.+.+.+|+ .++|++|.
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~--~~-~el~~~~~~~~~~vP~ifi 64 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGI--SK-ADLEKTVGKPVETVPQIFV 64 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChH--HH-HHHHHHHCCCCCcCCEEEE
Confidence 37999999999999999999999 789999999986532 22 224455555 89999873
No 23
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.29 E-value=3.7e-12 Score=83.29 Aligned_cols=54 Identities=20% Similarity=0.416 Sum_probs=41.5
Q ss_pred EEEEecCCChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHhhhcccCCCCC--CCccccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLRVYSFGSGRPTHRPTNL--CEWRTHW 105 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lg-----v~~~vidID~~~d~~~i~~~L~~~tg~--~s~P~~~ 105 (107)
|+||++++||||.+||++|++++ +.|..+|++.+ +.+. +.+...+|+ .++|++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~--~~~~-~~l~~~~g~~~~tVP~if 62 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE--GISK-ADLEKTVGKPVETVPQIF 62 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC--HHHH-HHHHHHhCCCCCCcCeEE
Confidence 78999999999999999999985 45777777643 3222 235566776 8999987
No 24
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.21 E-value=2.2e-11 Score=87.97 Aligned_cols=59 Identities=7% Similarity=0.040 Sum_probs=50.4
Q ss_pred CEEEEecC------CChhHHHHHHHHHhcCCCCEEEEccCCCC-chHhhhcccCCCCCCCcccccc
Q 033975 48 KIVIFSKS------YCPYCLRAKRIFADLNEQPFVVELDLRVY-SFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 48 ~Vvvfsks------~CPyC~~aK~lL~~lgv~~~vidID~~~d-~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
+|+||+.+ +||||.+||++|++++|+|+++||+.+++ .+++++.++..++..++|++|.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 58999999 99999999999999999999999987644 3566666666667799999985
No 25
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.12 E-value=9.8e-11 Score=71.20 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=45.0
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
+|++|+.+|||+|++++.+|++.+++|..+|++.++ +..+.+.+.+|..++|+.+
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~---~~~~~~~~~~~~~~vP~~~ 55 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDS---AAREEVLKVLGQRGVPVIV 55 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCH---HHHHHHHHHhCCCcccEEE
Confidence 488999999999999999999999999999987543 2234455567888999875
No 26
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.11 E-value=1.2e-10 Score=72.21 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=45.5
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCC-CCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPT-NLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~t-g~~s~P~~~ 105 (107)
+|++|+.+|||+|++++.+|++++++|..+|+|.+++. .+.+..++ |..++|++.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~---~~~~~~~~~~~~~vP~i~ 56 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGA---ADRVVSVNNGNMTVPTVK 56 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhH---HHHHHHHhCCCceeCEEE
Confidence 48899999999999999999999999999999866443 34455555 888999873
No 27
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.07 E-value=3.2e-10 Score=68.89 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=47.3
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
+|++|+.++||+|.+++.+|++.+++|..+|+|.+ .+..+.+.+++|..++|+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~---~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED---PEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC---HHHHHHHHHHcCCcccCEEEE
Confidence 48999999999999999999999999999999764 334455667778899999764
No 28
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.97 E-value=3.8e-10 Score=69.23 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=40.4
Q ss_pred CEEEEecCCChhHHHHHHHHHhc-----CCCCEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADL-----NEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~l-----gv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
+|++|+++|||+|.+++++|+++ ++.+..+|+|.+++ +.+..|..++||.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~-------l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD-------LADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh-------HHHHcCCcccCEEEE
Confidence 58999999999999999999976 46667777765432 344567888999763
No 29
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.83 E-value=5.9e-09 Score=69.93 Aligned_cols=48 Identities=8% Similarity=0.009 Sum_probs=40.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCC-CchHhhhcccCCC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRV-YSFGSGRPTHRPT 96 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~-d~~~i~~~L~~~t 96 (107)
|++|++++||+|++|+++|++.|++|+++||..++ +..++++.+++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLG 49 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence 57999999999999999999999999999997665 4566666665544
No 30
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.79 E-value=6.6e-09 Score=71.01 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=39.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCc-hHhhhcccCC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYS-FGSGRPTHRP 95 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~-~~i~~~L~~~ 95 (107)
|++|++++||+|++|+++|+++|++|+++|+..++.. .++.+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~ 48 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHc
Confidence 5799999999999999999999999999999877644 5666655543
No 31
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.67 E-value=3.9e-08 Score=62.34 Aligned_cols=53 Identities=6% Similarity=0.075 Sum_probs=44.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+++|+.+.||||.+++.+|..+|++|++++++.. ....+.+.+.++..++|+.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~~p~~~vP~l 54 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKG---SPKRDKFLEKGGKVQVPYL 54 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCC---hHHHHHHHHhCCCCcccEE
Confidence 6799999999999999999999999999998632 2223446678999999985
No 32
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.65 E-value=3.7e-08 Score=69.39 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=39.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCc-hHhhhcccCC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYS-FGSGRPTHRP 95 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~-~~i~~~L~~~ 95 (107)
|++|+.++||+|++|+++|++.|++|+++||..++.. .++.+.+...
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHHh
Confidence 7899999999999999999999999999999877654 5555555544
No 33
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.1e-07 Score=65.40 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=61.9
Q ss_pred hhHHHHHHhhhcCCCEEEEecCC-----ChhHHHHHHHHHhcC-CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 34 HSVSAFVQNSIFSNKIVIFSKSY-----CPYCLRAKRIFADLN-EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 34 ~~~k~~v~~~i~~~~Vvvfsks~-----CPyC~~aK~lL~~lg-v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
++..++++..|++++|++|-|-+ |+|+.++-++|+.+| +.|..+||=.+ +++++.|++.++=-+||+.|
T Consensus 2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d---~eiR~~lk~~s~WPT~PQLy 76 (105)
T COG0278 2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD---PEIRQGLKEYSNWPTFPQLY 76 (105)
T ss_pred chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC---HHHHhccHhhcCCCCCceee
Confidence 45678999999999999999866 999999999999999 78888988655 88999999999988888877
No 34
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.64 E-value=8e-08 Score=56.67 Aligned_cols=53 Identities=13% Similarity=-0.025 Sum_probs=45.5
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
.+|+.++||+|.+++.+|+.+|++|+.++++..++..+ .+.+.++..++|+..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~ 54 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLE 54 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEE
Confidence 68999999999999999999999999999987655444 466788999999864
No 35
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.61 E-value=4.5e-08 Score=67.19 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=39.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCc-hHhhhcccCCC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYS-FGSGRPTHRPT 96 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~-~~i~~~L~~~t 96 (107)
|.+|+.++||+|++|+++|++.|++|+++|+..++.. .++.+.+....
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLE 49 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcC
Confidence 5799999999999999999999999999999877544 55665555443
No 36
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.49 E-value=2.1e-07 Score=63.73 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=40.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCC-CchHhhhcccCC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRV-YSFGSGRPTHRP 95 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~-d~~~i~~~L~~~ 95 (107)
|.+|+.++||+|++|+++|++.|++|+.+|+..++ +..++.+.+...
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 68999999999999999999999999999997664 556666666654
No 37
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.47 E-value=4e-07 Score=56.98 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=36.4
Q ss_pred CEEEEecCCChhHHHHHHHHHh----cCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFAD----LNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~----lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
.|++|+.+|||+|+.++..|++ ++....++.||.+.+.+. .+..|.+++||..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~-----~~~~~v~~vPt~~ 58 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK-----AMEYGIMAVPAIV 58 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH-----HHHcCCccCCEEE
Confidence 5889999999999999999875 344455555554433322 2236777799864
No 38
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.46 E-value=2.9e-07 Score=65.06 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=40.0
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCC-CchHhhhcccC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRV-YSFGSGRPTHR 94 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~-d~~~i~~~L~~ 94 (107)
|++|+.++|++|++|+++|++.|++|+++|+..++ +.+++.+.|..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 78999999999999999999999999999998775 44666666655
No 39
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.45 E-value=2.8e-07 Score=57.78 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=41.4
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
++.+|+.+.||||++++.+|..+|++|+++++|... ..+ + +.+|..++|+.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-~~~----~-~~~~~~~vP~l 51 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-RKE----I-KWSSYKKVPIL 51 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-HHH----H-HHhCCCccCEE
Confidence 578999999999999999999999999999886432 222 2 34788889975
No 40
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.45 E-value=3.2e-07 Score=64.88 Aligned_cols=47 Identities=17% Similarity=0.081 Sum_probs=40.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCC-CchHhhhcccCC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRV-YSFGSGRPTHRP 95 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~-d~~~i~~~L~~~ 95 (107)
|+||+.++|++|++|+++|++.|++|+++|+..++ +.+++.+.+...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTKT 49 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHHh
Confidence 78999999999999999999999999999998775 556676666654
No 41
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.44 E-value=5.7e-07 Score=55.83 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=43.3
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+|+.++||||.+++-+|..+|++|+.+++|..... +.+.+.++..++|+.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~----~~~~~~np~~~vP~L 52 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKP----AEMLAASPKGTVPVL 52 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCC----HHHHHHCCCCCCCEE
Confidence 689999999999999999999999999998865332 345678999999975
No 42
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.38 E-value=5.4e-07 Score=55.08 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=44.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+.+|+.++||+|.+++-+|..+|++|+.++++..++ ....+.+.+.++..++|+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~l 55 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAG-EQRSPEFLAKNPAGTVPVL 55 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccC-ccCCHHHHhhCCCCCCCEE
Confidence 368999999999999999999999999988875432 2223456788999999985
No 43
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.35 E-value=1.6e-06 Score=53.26 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=42.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+++|+.++||+|.+++.+|...|++|+.+++|...... .+.+.++..++|+.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~vP~l 52 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPE----DLAELNPYGTVPTL 52 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCH----HHHhhCCCCCCCEE
Confidence 46899999999999999999999999999888653333 34456788889864
No 44
>PHA02125 thioredoxin-like protein
Probab=98.35 E-value=5.5e-07 Score=57.05 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=37.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
|++|+.+|||+|+.++..|++. .+..+++|.+++ .+ +.+..+..++||.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~-~~----l~~~~~v~~~PT~ 50 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEG-VE----LTAKHHIRSLPTL 50 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCC-HH----HHHHcCCceeCeE
Confidence 7899999999999999999864 566777775543 33 4444567778985
No 45
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.32 E-value=8e-07 Score=60.49 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=40.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCC-CchHhhhcccC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRV-YSFGSGRPTHR 94 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~-d~~~i~~~L~~ 94 (107)
|++|+.++|+.|++|+++|++.|++|+++|+..++ ..+++.+.+.+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999998775 66777776664
No 46
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.32 E-value=6.1e-07 Score=61.11 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=40.7
Q ss_pred HHHhhhcCCCEEEE-ecCCChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 39 FVQNSIFSNKIVIF-SKSYCPYCLRAKRIFADLN-----EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 39 ~v~~~i~~~~Vvvf-sks~CPyC~~aK~lL~~lg-----v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
+.+.+.....+++| +.+|||+|+.++.+|+++. +.+..+|+|.. . .+....|..++||..
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~---~----~l~~~~~v~~vPt~~ 80 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED---K----EKAEKYGVERVPTTI 80 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC---H----HHHHHcCCCcCCEEE
Confidence 44445555566665 7899999999999998665 33455666543 2 345556788899864
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.30 E-value=3.3e-06 Score=58.59 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=43.1
Q ss_pred HHHhhhcCC--CEEEEecCCChhHHHHHHHHH----hcCCCCEEEEccCCC-----CchHhhhc---ccCCCCCCCcccc
Q 033975 39 FVQNSIFSN--KIVIFSKSYCPYCLRAKRIFA----DLNEQPFVVELDLRV-----YSFGSGRP---THRPTNLCEWRTH 104 (107)
Q Consensus 39 ~v~~~i~~~--~Vvvfsks~CPyC~~aK~lL~----~lgv~~~vidID~~~-----d~~~i~~~---L~~~tg~~s~P~~ 104 (107)
..+++++.. -++.|+++|||||+.+.-.|. +.++++..+|+|.++ +..++++. +.-.++..+.||.
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~ 94 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF 94 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE
Confidence 344555433 388899999999998665554 445777888888553 12234433 3334677789986
Q ss_pred c
Q 033975 105 W 105 (107)
Q Consensus 105 ~ 105 (107)
-
T Consensus 95 v 95 (122)
T TIGR01295 95 V 95 (122)
T ss_pred E
Confidence 3
No 48
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.29 E-value=6.5e-07 Score=59.15 Aligned_cols=63 Identities=6% Similarity=0.014 Sum_probs=45.3
Q ss_pred HHHHHHhhhcCCCEEEEecCCChhHHHHHHHHHhc-----CCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADL-----NEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 36 ~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~l-----gv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
.++.++++-+.-.|.+|..++||||..+++++.++ ++.+.++|+|..++ +...-|-.++||.+
T Consensus 3 ~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e-------~a~~~~V~~vPt~v 70 (89)
T cd03026 3 LLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD-------EVEERGIMSVPAIF 70 (89)
T ss_pred HHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH-------HHHHcCCccCCEEE
Confidence 45667766666689999999999999999998765 46778888775533 22244555677754
No 49
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.25 E-value=1.9e-06 Score=53.21 Aligned_cols=55 Identities=13% Similarity=-0.063 Sum_probs=45.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+.+|+.+.||+|.+++-+|...|++|+.+++|..+. ....+.+.+.++...+|+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~-~~~~~~~~~~~p~~~vP~l 55 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKG-EHLKPEFLKLNPQHTVPTL 55 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccC-CcCCHHHHhhCcCCCCCEE
Confidence 368999999999999999999999999998876433 3344567778998899974
No 50
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.22 E-value=2.6e-06 Score=58.84 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=41.8
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCC-CCchHhhhcccCC
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-VYSFGSGRPTHRP 95 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~-~d~~~i~~~L~~~ 95 (107)
.|++|+.+.|+.|++|+++|++.|++|+++|+-.+ ++.+++.+.+...
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~ 49 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDL 49 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHc
Confidence 47899999999999999999999999999999766 4777887777744
No 51
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.21 E-value=2.6e-06 Score=52.60 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=40.0
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+|+.++||||.+++-+|..+|++|+.++++..+.... .+.++..++|+.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~-----~~~~~~~~vP~L 51 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATP-----IRMIGAKQVPIL 51 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHH-----HHhcCCCccCEE
Confidence 58999999999999999999999999998875432221 245678889976
No 52
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=4.4e-06 Score=64.41 Aligned_cols=64 Identities=8% Similarity=0.116 Sum_probs=59.6
Q ss_pred HHHhhhcCCCEEEEecCC-----ChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 39 FVQNSIFSNKIVIFSKSY-----CPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 39 ~v~~~i~~~~Vvvfsks~-----CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
.++.+++.++|++|-|.. |+|.+++..+|..+|++|..+||-.+ +++++.|+..+.--|||++|
T Consensus 131 ~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D---eelRqglK~fSdWPTfPQly 199 (227)
T KOG0911|consen 131 RLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTD---EELRQGLKEFSDWPTFPQLY 199 (227)
T ss_pred HHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCC---HHHHHHhhhhcCCCCcccee
Confidence 899999999999999977 99999999999999999999999776 56999999999999999886
No 53
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.16 E-value=5.4e-06 Score=53.95 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=44.4
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+.+|+.+.||||.+++-+|...|++|+.++++.... .+.+.+.++...+|+.
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~----~~~~~~~np~~~vPvL 70 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDK----PDWFLEKNPQGKVPAL 70 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCC----cHHHHhhCCCCCcCEE
Confidence 5899999999999999999999999999998875432 2346678888899974
No 54
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.06 E-value=3.1e-06 Score=70.49 Aligned_cols=83 Identities=5% Similarity=-0.046 Sum_probs=57.7
Q ss_pred HHHhcCCCC-cccchhHHHHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCC
Q 033975 21 LLLGNAPTA-TEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLC 99 (107)
Q Consensus 21 ~~~~~~~~~-~~~~~~~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~ 99 (107)
+.|++..++ ..-+++.++.++.+-+...|.+|..++||||..+.+.+.++.+...-|..+- -|+.+.++...++.- .
T Consensus 92 ~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~-id~~~~~~~~~~~~v-~ 169 (515)
T TIGR03140 92 LAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTM-IDGALFQDEVEALGI-Q 169 (515)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEE-EEchhCHHHHHhcCC-c
Confidence 444555333 3447788889998888889999999999999999999988775432222222 355566666655544 4
Q ss_pred Cccccc
Q 033975 100 EWRTHW 105 (107)
Q Consensus 100 s~P~~~ 105 (107)
++|+++
T Consensus 170 ~VP~~~ 175 (515)
T TIGR03140 170 GVPAVF 175 (515)
T ss_pred ccCEEE
Confidence 899876
No 55
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.01 E-value=1.5e-05 Score=50.69 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=35.2
Q ss_pred CEEEEecCCChhHHHH----HHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRA----KRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~a----K~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.|.+|+ +|||.|+.+ +++.++++..+.++++|.. .+.. .-|-.++||.
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~---~~a~-----~~~v~~vPti 53 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDM---NEIL-----EAGVTATPGV 53 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH---HHHH-----HcCCCcCCEE
Confidence 466776 999999998 6677889999999999832 2221 1377778875
No 56
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.00 E-value=5.1e-06 Score=69.13 Aligned_cols=83 Identities=10% Similarity=-0.019 Sum_probs=54.4
Q ss_pred HHHhcCCCC-cccchhHHHHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCC
Q 033975 21 LLLGNAPTA-TEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLC 99 (107)
Q Consensus 21 ~~~~~~~~~-~~~~~~~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~ 99 (107)
+.|++..++ ..-+++.++.++.+-+...|.+|..++||||..+.+.++++.+....|..+.. |+.+..+...++ +..
T Consensus 91 ~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~i-d~~~~~~~~~~~-~v~ 168 (517)
T PRK15317 91 LALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMI-DGALFQDEVEAR-NIM 168 (517)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEE-EchhCHhHHHhc-CCc
Confidence 445555222 33377888899988888899999999999999999999876643222222211 334444444444 445
Q ss_pred Cccccc
Q 033975 100 EWRTHW 105 (107)
Q Consensus 100 s~P~~~ 105 (107)
++|+++
T Consensus 169 ~VP~~~ 174 (517)
T PRK15317 169 AVPTVF 174 (517)
T ss_pred ccCEEE
Confidence 899876
No 57
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.99 E-value=1.3e-05 Score=48.96 Aligned_cols=55 Identities=13% Similarity=0.001 Sum_probs=43.7
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+++|+.+.||+|.+++-+|...|++|+.+++|..++ ....+.+.+.++...+|+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~vP~l 55 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKG-ETRTPEFLALNPNGEVPVL 55 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCc-ccCCHHHHHhCCCCCCCEE
Confidence 368999999999999999999999999999875432 2223445568888889974
No 58
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.94 E-value=1e-05 Score=52.19 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=27.6
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC----CCCEEEEccCC
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLR 82 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg----v~~~vidID~~ 82 (107)
++++|++++|+.|..++.+|.+.. +.++.|||+.+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d 39 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED 39 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC
Confidence 489999999999999999999765 34578888743
No 59
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.91 E-value=3.4e-05 Score=50.61 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=37.2
Q ss_pred HhhhcCCC--EEEEecCCChhHHHHHHHH-------HhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 41 QNSIFSNK--IVIFSKSYCPYCLRAKRIF-------ADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 41 ~~~i~~~~--Vvvfsks~CPyC~~aK~lL-------~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
++.+++++ ++.|+.+|||+|+..+..+ +.++-.+.++.+|.+.+.... ..+.+..|..++||..
T Consensus 5 ~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 5 AQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEI-TALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHH-HHHHHHcCCCCCCEEE
Confidence 34444444 6689999999999887544 122224555555544332222 2333444777899864
No 60
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.91 E-value=2.8e-05 Score=58.05 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=43.8
Q ss_pred chhHHHHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 33 DHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 33 ~~~~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lg-----v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
+++.+..++.+-....|++|+.+|||+|..++.+++++. +.+..+|+|.. .+ +....|..++||..
T Consensus 121 ~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~---~~----~~~~~~V~~vPtl~ 191 (215)
T TIGR02187 121 SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN---PD----LAEKYGVMSVPKIV 191 (215)
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC---HH----HHHHhCCccCCEEE
Confidence 455566666644455777899999999999999988654 22334444433 22 33346788899874
No 61
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.76 E-value=4.2e-05 Score=42.59 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=34.9
Q ss_pred EEEEecCCChhHHHHHHHHHh-----cCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFAD-----LNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~-----lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
+++|..++||+|.+.+..+++ .++.+..++++..++..+. ....+..++|+..
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKE----LKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhH----HHhCCCccccEEE
Confidence 468999999999999999994 4455666666554432221 2334555677654
No 62
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.74 E-value=2.3e-05 Score=49.13 Aligned_cols=49 Identities=8% Similarity=0.026 Sum_probs=40.9
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccc
Q 033975 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRT 103 (107)
Q Consensus 51 vfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~ 103 (107)
+|..++||||.+++-+|...|++|++++++..+. .+.+.+.++..++|+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~----~~~~~~~~p~~~vPv 49 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK----RPEFLKLNPKGKVPV 49 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST----SHHHHHHSTTSBSSE
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc----hhHHHhhcccccceE
Confidence 6889999999999999999999999999985543 344566678888886
No 63
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.69 E-value=0.00011 Score=45.50 Aligned_cols=55 Identities=7% Similarity=-0.007 Sum_probs=44.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+.+|..+.||+|.+++-+|...|++|+.++++..+. ....+.+.+.++...+|+.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~P~~~vP~l 56 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKG-EHKSPEHLARNPFGQIPAL 56 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCcccc-ccCCHHHHhhCCCCCCCEE
Confidence 579999999999999999999999999988875432 2334456678998999963
No 64
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.65 E-value=7e-05 Score=50.15 Aligned_cols=46 Identities=2% Similarity=-0.249 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCC----CCCCcccccc
Q 033975 58 PYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPT----NLCEWRTHWW 106 (107)
Q Consensus 58 PyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~t----g~~s~P~~~~ 106 (107)
-.|.+++++|+..+|+|+.+||+.+++..+ .+.+.+ |..++|++|-
T Consensus 17 ~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~---em~~~~~~~~g~~tvPQIFi 66 (92)
T cd03030 17 KRQQEVLGFLEAKKIEFEEVDISMNEENRQ---WMRENVPNENGKPLPPQIFN 66 (92)
T ss_pred HHHHHHHHHHHHCCCceEEEecCCCHHHHH---HHHHhcCCCCCCCCCCEEEE
Confidence 368899999999999999999987644332 233333 5699999883
No 65
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.62 E-value=0.00013 Score=51.30 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=42.0
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCC-CCchHhhhcccCC
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-VYSFGSGRPTHRP 95 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~-~d~~~i~~~L~~~ 95 (107)
.+++|..+.|.-|++|+++|++.|++|+++|+-.+ ++.+++.+.+.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGNK 50 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHHc
Confidence 47899999999999999999999999999999655 5778888877764
No 66
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.60 E-value=0.00011 Score=50.14 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=41.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCC-CchHhhhcccCCC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRV-YSFGSGRPTHRPT 96 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~-d~~~i~~~L~~~t 96 (107)
+.+|..+.|.-|++|+++|++.|++|+++|+-+++ +..++.+.+....
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 57999999999999999999999999999996664 7777777776653
No 67
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.59 E-value=0.00012 Score=50.27 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=40.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCC-CCchHhhhcccCC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-VYSFGSGRPTHRP 95 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~-~d~~~i~~~L~~~ 95 (107)
|.+|..+.|+-|++|+++|++.|++|+++|+-.. ....++.+.+...
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKL 48 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHc
Confidence 5799999999999999999999999999999665 4677777777664
No 68
>PRK10853 putative reductase; Provisional
Probab=97.57 E-value=0.00015 Score=50.44 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=40.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCC-CCchHhhhcccC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-VYSFGSGRPTHR 94 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~-~d~~~i~~~L~~ 94 (107)
+++|..+.|.-|++|+++|++.|++|+++|+-.+ ++.+++.+.+.+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~ 48 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDE 48 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHH
Confidence 6899999999999999999999999999999655 477787777764
No 69
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.57 E-value=0.0002 Score=43.83 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=35.3
Q ss_pred CCCEEEEecCCChhHHHHHHHHHh-----cCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFAD-----LNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~-----lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
..-+++|+.+||++|...+..|++ .++.+..+|.+.. .++ .+..|..++||..
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~----~~~~~v~~~P~~~ 68 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN---PEL----AEEYGVRSIPTFL 68 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC---hhH----HHhcCcccccEEE
Confidence 345789999999999999999976 4455566666542 222 2223556688753
No 70
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.53 E-value=0.00017 Score=45.44 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=44.4
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRT 103 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~ 103 (107)
+++|..+.||+|.+++-+|..+|++|+.+++|..... ...+.+.+.++...+|+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~inP~g~vP~ 54 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSE-HNEPWFMRLNPTGEVPV 54 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCc-cCCHHHHHhCcCCCCCE
Confidence 4689999999999999999999999999988765432 23345778899999996
No 71
>PRK10026 arsenate reductase; Provisional
Probab=97.53 E-value=0.00022 Score=51.37 Aligned_cols=49 Identities=8% Similarity=0.073 Sum_probs=42.9
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCC-CCchHhhhcccCC
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-VYSFGSGRPTHRP 95 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~-~d~~~i~~~L~~~ 95 (107)
..+++|..+.|.-|++|+++|+++|++|+++|+-.+ +..++++..+.+.
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADM 51 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhC
Confidence 358999999999999999999999999999999655 4778888887754
No 72
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00019 Score=50.01 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=40.2
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCC-CchHhhhcccCC
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRV-YSFGSGRPTHRP 95 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~-d~~~i~~~L~~~ 95 (107)
-|++|..+.|.-|++|+++|+++|++|+++|+-.++ +.+++++.+...
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~ 50 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKL 50 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHc
Confidence 488999999999999999999999999999997664 556666655543
No 73
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.52 E-value=0.00031 Score=45.62 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=37.6
Q ss_pred hhhcCCCEEEEecCCChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 42 NSIFSNKIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 42 ~~i~~~~Vvvfsks~CPyC~~aK~lL~~lg-----v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
++++...++.|..+|||+|++....|+++. ....+..+|.+++ .+ +.+.-+..++||..
T Consensus 13 ~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~----~~~~~~i~~~Pt~~ 76 (101)
T cd02994 13 LVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-PG----LSGRFFVTALPTIY 76 (101)
T ss_pred HHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-Hh----HHHHcCCcccCEEE
Confidence 455666899999999999999888886543 2233344443322 22 23333567799864
No 74
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.51 E-value=0.00031 Score=46.54 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=32.6
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg-----v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
-|+.|..+||+.|+.....|.++. +.+..+|+|.+++..++ .+.-+-.++||.
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l----~~~~~V~~~Pt~ 75 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMEL----CRREKIIEVPHF 75 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHH----HHHcCCCcCCEE
Confidence 467899999999998877776532 33334444443222233 333366779984
No 75
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.49 E-value=0.00016 Score=48.91 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=36.2
Q ss_pred HHhhhcCC---CEEEEecCCChhHHHHHHHHH-------hcCCCCEEEEccCCCCchH--------hhhcccCCCCCCCc
Q 033975 40 VQNSIFSN---KIVIFSKSYCPYCLRAKRIFA-------DLNEQPFVVELDLRVYSFG--------SGRPTHRPTNLCEW 101 (107)
Q Consensus 40 v~~~i~~~---~Vvvfsks~CPyC~~aK~lL~-------~lgv~~~vidID~~~d~~~--------i~~~L~~~tg~~s~ 101 (107)
+++..+++ -++.|+.+|||+|++.+..+. .++-.+.++.||.+.+... -...+...-+..++
T Consensus 6 ~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~ 85 (125)
T cd02951 6 LAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT 85 (125)
T ss_pred HHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc
Confidence 33444444 467899999999998876442 1222344444443332100 01234444456779
Q ss_pred cccc
Q 033975 102 RTHW 105 (107)
Q Consensus 102 P~~~ 105 (107)
||..
T Consensus 86 Pt~~ 89 (125)
T cd02951 86 PTVI 89 (125)
T ss_pred cEEE
Confidence 9864
No 76
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.39 E-value=0.00038 Score=58.69 Aligned_cols=78 Identities=12% Similarity=0.006 Sum_probs=53.8
Q ss_pred HHHhcCCC-CcccchhHHHHHHhhhcCCCEEEEecCCChhHHHHHHHHHh----c-CCCCEEEEccCCCCchHhhhcccC
Q 033975 21 LLLGNAPT-ATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFAD----L-NEQPFVVELDLRVYSFGSGRPTHR 94 (107)
Q Consensus 21 ~~~~~~~~-~~~~~~~~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~----l-gv~~~vidID~~~d~~~i~~~L~~ 94 (107)
+.|++..+ +..-+++.++.++.+-+...|.+|..++||||.++.+++++ . +|..++||+...+ ++. .
T Consensus 451 ~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~---~~~----~ 523 (555)
T TIGR03143 451 LALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP---DLK----D 523 (555)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccH---HHH----H
Confidence 45555532 23447788889987777778999999999999988877653 3 4677788776543 322 2
Q ss_pred CCCCCCccccc
Q 033975 95 PTNLCEWRTHW 105 (107)
Q Consensus 95 ~tg~~s~P~~~ 105 (107)
.-|--++|+++
T Consensus 524 ~~~v~~vP~~~ 534 (555)
T TIGR03143 524 EYGIMSVPAIV 534 (555)
T ss_pred hCCceecCEEE
Confidence 33666688765
No 77
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.38 E-value=0.00019 Score=46.73 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=31.8
Q ss_pred EEEEecCCChhHHHHHHHHHh----cCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFAD----LNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~----lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
+++|+.+|||.|+..+..|++ ++-.+.++++|.+.+ .++ ....+..++||..
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~-~~l----~~~~~v~~vPt~~ 72 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED-QEI----AEAAGIMGTPTVQ 72 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC-HHH----HHHCCCeeccEEE
Confidence 568999999999999888865 222234444443332 222 2233456788754
No 78
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.37 E-value=0.001 Score=48.05 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=32.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHhhhcccCC--CCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLRVYSFGSGRPTHRP--TNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lg-----v~~~vidID~~~d~~~i~~~L~~~--tg~~s~P~~ 104 (107)
++.|..+|||.|+.....|+++. -+..++.||.+++ .++.+.++=. .|.+++||.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~~~PT~ 112 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSKQLPTI 112 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcCCCCEE
Confidence 88999999999998887775433 1234444443333 2333333211 134558985
No 79
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.37 E-value=0.00037 Score=43.16 Aligned_cols=52 Identities=17% Similarity=0.066 Sum_probs=39.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCC-CCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNL-CEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~-~s~P~~ 104 (107)
+.+|+.+.||+|.+++-+|...|++|+.++++..... ..+.+.++. ..+|+.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~----~~~~~~~p~~~~vP~l 53 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKS----ELLLASNPVHKKIPVL 53 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCC----HHHHHhCCCCCCCCEE
Confidence 3689999999999999999999999999887654222 224456663 678853
No 80
>PHA02278 thioredoxin-like protein
Probab=97.34 E-value=0.00063 Score=45.99 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=36.1
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC------CCCEEEEccCCCC-chHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLRVY-SFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg------v~~~vidID~~~d-~~~i~~~L~~~tg~~s~P~~ 104 (107)
-++-|..+||+.|+.....|+++. +.+..+|+|.++. ..+ +.+.-+-+++||.
T Consensus 17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~----l~~~~~I~~iPT~ 76 (103)
T PHA02278 17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREK----AVKLFDIMSTPVL 76 (103)
T ss_pred EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHH----HHHHCCCccccEE
Confidence 466899999999998888776542 3355677775532 222 5555577778885
No 81
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.33 E-value=0.00041 Score=42.29 Aligned_cols=54 Identities=9% Similarity=-0.138 Sum_probs=42.8
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
++|....||+|.+++-+|..+|++|+.+++|..+. ....+.+.+.++...+|+.
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l 55 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKG-EQLSPAYRALNPQGLVPTL 55 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccC-CcCChHHHHhCCCCCCCEE
Confidence 58888999999999999999999999988876432 2223446667888899964
No 82
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.32 E-value=0.00066 Score=41.78 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=40.3
Q ss_pred EEEecCCChhHHHHHHHHHh--cCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 50 VIFSKSYCPYCLRAKRIFAD--LNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~--lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+|..+.||+|.+++-+|.. +|++|+.+++|......+ +.+.++...+|..
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~----~~~~~p~~~vP~l 54 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDES----LLAVNPLGKIPAL 54 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChH----HHHhCCCCCCCEE
Confidence 68999999999999999999 889999999885433333 3446777788863
No 83
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.31 E-value=0.00032 Score=48.84 Aligned_cols=50 Identities=18% Similarity=0.396 Sum_probs=33.7
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCC------CCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNE------QPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv------~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
-|+-|+.+|||.|+..+..|.++-- .+..+|+|..+ + |...-|-+++||.
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~---~----la~~~~V~~iPTf 72 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP---D----FNKMYELYDPPTV 72 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH---H----HHHHcCCCCCCEE
Confidence 4556999999999998888865442 23455555443 2 4445577778885
No 84
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.29 E-value=0.00057 Score=43.44 Aligned_cols=48 Identities=4% Similarity=-0.050 Sum_probs=37.6
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 55 SYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 55 s~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
++||||.+++-+|..+|++|+.++++.. +.....+.+ +.++...+|+.
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~-~~~~~~~~~-~~~p~~~vP~L 61 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFP-DIPPILGEL-TSGGFYTVPVI 61 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCC-Ccccccccc-cCCCCceeCeE
Confidence 6799999999999999999999888744 333334445 67888888864
No 85
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.29 E-value=0.00065 Score=50.77 Aligned_cols=36 Identities=31% Similarity=0.561 Sum_probs=28.5
Q ss_pred CCEEEEecCCChhHHHH----HHHHHhcCCCCEEEEccCC
Q 033975 47 NKIVIFSKSYCPYCLRA----KRIFADLNEQPFVVELDLR 82 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~a----K~lL~~lgv~~~vidID~~ 82 (107)
.++++|..+|||+|++. +++-+++|+....|.+|..
T Consensus 71 ~~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~ 110 (181)
T PRK13728 71 WKVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ 110 (181)
T ss_pred ceEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 34999999999999976 6666777877777777754
No 86
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.28 E-value=0.00079 Score=45.09 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=37.9
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 55 SYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 55 s~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
..||||+++.=+|...|++|+++++|.....+ .+.++++...+|+-
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~----~~~~~nP~g~vPvL 65 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPE----DLKDLAPGTQPPFL 65 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCH----HHHHhCCCCCCCEE
Confidence 55999999999999999999999998664433 37778888888864
No 87
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.28 E-value=0.00058 Score=50.90 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=39.5
Q ss_pred HHhhhcCCCEEEEec---CCChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 40 VQNSIFSNKIVIFSK---SYCPYCLRAKRIFADLN-----EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 40 v~~~i~~~~Vvvfsk---s~CPyC~~aK~lL~~lg-----v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+.+-+...+++|+. +|||+|+..+.+|.++. +.+.++++|.+++. + +.+.-|..++||.
T Consensus 14 ~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~-~----l~~~~~V~~~Pt~ 81 (215)
T TIGR02187 14 LKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK-E----EAEKYGVERVPTT 81 (215)
T ss_pred HHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH-H----HHHHcCCCccCEE
Confidence 333444557888988 99999999998887653 33457777755432 2 3334466778875
No 88
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.27 E-value=0.00057 Score=42.15 Aligned_cols=39 Identities=15% Similarity=0.004 Sum_probs=31.6
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 55 SYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 55 s~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+.||||.+++.+|...|++|+.++++... .++...+|+.
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l 52 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFL 52 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcccCEE
Confidence 37999999999999999999999987532 5566677764
No 89
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.26 E-value=0.0015 Score=44.69 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=26.7
Q ss_pred EEEEecCCChhHHHHHHHHHh------cCCCCEEEEccCCCC
Q 033975 49 IVIFSKSYCPYCLRAKRIFAD------LNEQPFVVELDLRVY 84 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~------lgv~~~vidID~~~d 84 (107)
++.|+.+||++|+.....+.+ .+..+..+++|.+++
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~ 64 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE 64 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC
Confidence 556999999999998877765 334567788876543
No 90
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.26 E-value=0.0008 Score=42.84 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=35.7
Q ss_pred CCEEEEecCCChhHHHHHHHHHhc----CCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~l----gv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
.-|+.|..+|||+|+..+..|.++ +-+...+.+|.+++ .+ +.+.-+..++||..
T Consensus 19 ~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~----l~~~~~v~~~Pt~~ 76 (103)
T PF00085_consen 19 PVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-KE----LCKKYGVKSVPTII 76 (103)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-HH----HHHHTTCSSSSEEE
T ss_pred CEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-ch----hhhccCCCCCCEEE
Confidence 357789999999999988777543 32455556655433 33 33444567799864
No 91
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.25 E-value=0.00014 Score=47.82 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=33.5
Q ss_pred CCEEEEecCCChhHHHHHHHHHh---cC----CCCEEEEccCCCCch---------------HhhhcccCCCCCCCcccc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFAD---LN----EQPFVVELDLRVYSF---------------GSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~---lg----v~~~vidID~~~d~~---------------~i~~~L~~~tg~~s~P~~ 104 (107)
+.+++|+.++||||++..+.+.+ .. -.+.++-++.+++.. ...+.+.+.-|....||.
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~ 86 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTI 86 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEE
Confidence 45889999999999998766653 11 135555554433221 123446666678888886
Q ss_pred c
Q 033975 105 W 105 (107)
Q Consensus 105 ~ 105 (107)
+
T Consensus 87 ~ 87 (112)
T PF13098_consen 87 V 87 (112)
T ss_dssp E
T ss_pred E
Confidence 4
No 92
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.23 E-value=0.00068 Score=43.45 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=35.0
Q ss_pred CEEEEecCCChhHHHHHHHHHh----cC--CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFAD----LN--EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~----lg--v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-++.|..+|||+|++.+..|.+ ++ -.+.++.+|.+.+..++.+ .-+.+++|+..
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~----~~~i~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAK----KYGVSGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHH----hCCCCCcCEEE
Confidence 4779999999999988777654 33 2356777776552223222 23556799864
No 93
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.22 E-value=0.00028 Score=43.89 Aligned_cols=49 Identities=6% Similarity=-0.073 Sum_probs=37.3
Q ss_pred CChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 56 YCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 56 ~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.||||.++.=+|..+|+++.+..++..+++..--+.+.++++..++|+=
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L 49 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVL 49 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEE
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEE
Confidence 5999999999999999999887775544544444567888999999974
No 94
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.19 E-value=0.00097 Score=43.50 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=33.1
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC----CCCEEEEccCCCC-chHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRVY-SFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg----v~~~vidID~~~d-~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-++.|..+||++|++....|.++. -...++.+|-+.+ ..++.+ .-+..++||..
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~----~~~i~~~Pt~~ 79 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCG----KYGVQGFPTLK 79 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHH----HcCCCcCCEEE
Confidence 578999999999998877776542 2234444443332 223322 33567799875
No 95
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.18 E-value=0.0015 Score=45.68 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=37.8
Q ss_pred HhhhcCC-CEE-EEecCCChhHHHHHH-HHHh------cCCCCEEEEccCCCCc--hH-hhhcccCCCCCCCccccc
Q 033975 41 QNSIFSN-KIV-IFSKSYCPYCLRAKR-IFAD------LNEQPFVVELDLRVYS--FG-SGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 41 ~~~i~~~-~Vv-vfsks~CPyC~~aK~-lL~~------lgv~~~vidID~~~d~--~~-i~~~L~~~tg~~s~P~~~ 105 (107)
+...+++ +|+ .|+.+||++|+..++ .|.+ ++-.|..|.+|.++.. ++ ..+.+..+.|...+||..
T Consensus 9 ~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~v 85 (124)
T cd02955 9 EKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNV 85 (124)
T ss_pred HHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEE
Confidence 3444444 344 589999999998754 3332 3345666666654322 11 233333456778899864
No 96
>PRK10387 glutaredoxin 2; Provisional
Probab=97.18 E-value=0.00074 Score=48.90 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=39.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRT 103 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~ 103 (107)
+.+|+.+.||||.+++-+|..+|++|+.++++..+.... .+.++...+|+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~-----~~~~p~~~VPv 50 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATP-----IRMIGQKQVPI 50 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhH-----HHhcCCcccce
Confidence 468999999999999999999999999998864432221 24667777886
No 97
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.17 E-value=0.0013 Score=45.88 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=30.5
Q ss_pred CEEEEec-------CCChhHHHHHHHH----HhcC--CCCEEEEccCCCCchHhhhcccCCCCCC-Ccccc
Q 033975 48 KIVIFSK-------SYCPYCLRAKRIF----ADLN--EQPFVVELDLRVYSFGSGRPTHRPTNLC-EWRTH 104 (107)
Q Consensus 48 ~Vvvfsk-------s~CPyC~~aK~lL----~~lg--v~~~vidID~~~d~~~i~~~L~~~tg~~-s~P~~ 104 (107)
-++.|+. +|||.|+.++-.| ++++ +.+..||+|..+.-.+....+...-+-. ++||.
T Consensus 24 vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~ 94 (119)
T cd02952 24 IFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTL 94 (119)
T ss_pred EEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEE
Confidence 3667888 8999999766555 4444 3344555554321111112233333333 68885
No 98
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.17 E-value=0.0019 Score=40.30 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=38.9
Q ss_pred HHhhhcC--CCEEEEecCCChhHHHHHHHHHh----c--CCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 40 VQNSIFS--NKIVIFSKSYCPYCLRAKRIFAD----L--NEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 40 v~~~i~~--~~Vvvfsks~CPyC~~aK~lL~~----l--gv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
.+..+.+ .-+++|..+||++|+.....|.+ + +-.+..+.+|.+.+ ..+.+.-|.+++||..
T Consensus 8 ~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 8 FDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-----NDLCSEYGVRGYPTIK 76 (101)
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-----HHHHHhCCCCCCCEEE
Confidence 3344433 36789999999999998887754 3 23455666654432 2334445667899864
No 99
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.17 E-value=0.00097 Score=44.41 Aligned_cols=57 Identities=14% Similarity=0.308 Sum_probs=34.2
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFADLN-----EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~lg-----v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
..-++.|..+|||+|++.+..|.++. -.+.+..||.+.+...+. .+..+...+||..
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~---~~~~~v~~~Pti~ 83 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFA---KEELQLKSFPTIL 83 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhH---HhhcCCCcCCEEE
Confidence 34577999999999999888886543 123444444433222221 1223566688863
No 100
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.16 E-value=0.00079 Score=54.31 Aligned_cols=34 Identities=21% Similarity=0.517 Sum_probs=32.5
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccC
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~ 81 (107)
++++|--.+||||-+++.+|+=+|++|.++|++-
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnp 123 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNP 123 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecc
Confidence 8999999999999999999999999999999974
No 101
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.13 E-value=0.00083 Score=44.56 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=34.3
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCC---CCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv---~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-++.|..+|||+|+.....|+++.- ...++.||.+++..+ +.+.-|-.++||..
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~----l~~~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPS----LLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHH----HHHhcCCeecCEEE
Confidence 4778999999999988877765432 233455554422233 33445667799863
No 102
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.11 E-value=0.0034 Score=40.27 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=33.8
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC----CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg----v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-++.|..+||++|++.+..|.++. -.+.+..+|.+++ .++.+ .-|..++||+.
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~----~~~i~~~P~~~ 77 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH-QSLAQ----QYGVRGFPTIK 77 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch-HHHHH----HCCCCccCEEE
Confidence 377899999999999887776532 2345555554433 33332 22556799874
No 103
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.10 E-value=0.00087 Score=41.80 Aligned_cols=53 Identities=8% Similarity=-0.048 Sum_probs=42.9
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+|+.+.||+|.+++-+|...|++|+.+++|..++ ...+.+.+.++...+|+.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~--~~~~~~~~~nP~~~vP~L 54 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE--NKTPEFLKKFPLGKVPAF 54 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc--cCCHHHHHhCCCCCCCEE
Confidence 57899999999999999999999999998886532 233446677888888874
No 104
>PTZ00051 thioredoxin; Provisional
Probab=97.03 E-value=0.0018 Score=41.49 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=35.6
Q ss_pred HHhhhcCCC--EEEEecCCChhHHHHHHHHHhcC---CCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 40 VQNSIFSNK--IVIFSKSYCPYCLRAKRIFADLN---EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 40 v~~~i~~~~--Vvvfsks~CPyC~~aK~lL~~lg---v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+.+++.++ ++.|..+||+.|++....|.++. .+...+.+|.+++ .+ +.+.-+.+++||.
T Consensus 11 ~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-~~----~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 11 FESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL-SE----VAEKENITSMPTF 75 (98)
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch-HH----HHHHCCCceeeEE
Confidence 444555544 56899999999999988887642 1233444443322 22 2233355678874
No 105
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.99 E-value=0.0008 Score=47.33 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=36.3
Q ss_pred chhHHHHHHhhhcCCCEEEEecCCChhHHHHH----HHHHhc-CCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 33 DHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAK----RIFADL-NEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 33 ~~~~k~~v~~~i~~~~Vvvfsks~CPyC~~aK----~lL~~l-gv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+++..+.++.+.+...+++++-+|||.|...- ++.+.. +++..++.-|. +.+.+.+.|. .|.+++|+.
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~--~~el~~~~lt--~g~~~IP~~ 101 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDE--NKELMDQYLT--NGGRSIPTF 101 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHH--HHHHTTTTTT---SS--SSEE
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecC--ChhHHHHHHh--CCCeecCEE
Confidence 45666778888788899999999999999654 444444 34455554332 2233444444 889999986
No 106
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.97 E-value=0.0018 Score=40.72 Aligned_cols=54 Identities=7% Similarity=0.028 Sum_probs=41.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+.+|+.+. |+|.+++-+|..+|++|+.+.++..++ ....+.+.+.++...+|+.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l 55 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKG-EQKKPEFLKINPNGRIPAI 55 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCC-cccCHHHHHhCcCCCCCEE
Confidence 57899887 999999999999999999888875432 2233345568888888864
No 107
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.97 E-value=0.0016 Score=44.28 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=36.8
Q ss_pred HHHHHhhhcCC-CEEEEecCCChhHHHHHHHHHhcCC---CCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 37 SAFVQNSIFSN-KIVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 37 k~~v~~~i~~~-~Vvvfsks~CPyC~~aK~lL~~lgv---~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.++.+.+-+.. -++.|..+|||.|+..+..|.++.- ....+.||.+... + +.+.-+..++||+
T Consensus 13 ~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~-~----l~~~~~v~~vPt~ 79 (113)
T cd02989 13 KEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP-F----LVEKLNIKVLPTV 79 (113)
T ss_pred HHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH-H----HHHHCCCccCCEE
Confidence 33433333333 4568899999999988888765331 2344555544322 2 3344466678875
No 108
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.97 E-value=0.0012 Score=44.60 Aligned_cols=45 Identities=7% Similarity=0.087 Sum_probs=32.4
Q ss_pred EecCCChhHHHHHHHHHhcCCCCEEEEccCCC-CchHhhhcccCCC
Q 033975 52 FSKSYCPYCLRAKRIFADLNEQPFVVELDLRV-YSFGSGRPTHRPT 96 (107)
Q Consensus 52 fsks~CPyC~~aK~lL~~lgv~~~vidID~~~-d~~~i~~~L~~~t 96 (107)
|..+.|.-|++|+++|++.|+.|+++|+-.++ +..++.+.+....
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 78899999999999999999999999997664 6666666655443
No 109
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=96.96 E-value=0.00091 Score=44.12 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=32.1
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC------C----CCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN------E----QPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg------v----~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
-++.|..+||++|++....|+++. . ...+..+|-+.+ .+ +.+.-|.+++||.
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~----l~~~~~v~~~Ptl 82 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SD----IADRYRINKYPTL 82 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HH----HHHhCCCCcCCEE
Confidence 367899999999999887775321 0 233334443333 22 3344477789985
No 110
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=96.95 E-value=0.0018 Score=40.18 Aligned_cols=55 Identities=5% Similarity=-0.157 Sum_probs=42.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+.+|+.+.+|+|+++.-+|...|++|+.+.+|..+. +...+.+.+.++...+|+.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~L 55 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKG-EQLTPEFKKINPFGKVPAI 55 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCC-CcCCHHHHHhCcCCCCCEE
Confidence 368999999999999999999999999888875432 2222346667888888863
No 111
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.93 E-value=0.0046 Score=39.52 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=34.6
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC----CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg----v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-++.|..+||+.|++.+..|.++. -.+.++.+|.+.+. + |.+.-+..++||..
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~----l~~~~~i~~~Pt~~ 71 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-Q----IAQQFGVQALPTVY 71 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-H----HHHHcCCCCCCEEE
Confidence 477899999999999887776433 23445566555432 3 33334667799853
No 112
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=2.1e-05 Score=57.87 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=28.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHH
Q 033975 1 MKKRGWQSRFLVEAVGLLFFLLLGNAPTATEADHSVSAFV 40 (107)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~v 40 (107)
||+|||||+|+|+++++++ |++++.+.|.. .|++...+
T Consensus 125 ~G~RS~RYsmvV~nGvV~~-~~iE~p~~~~~-vS~a~~mL 162 (165)
T COG0678 125 FGVRSWRYSMVVENGVVEK-LFIEPPGDPFT-VSSADTML 162 (165)
T ss_pred cceeeeeEEEEEeCCeEEE-EEecCCCCcee-ecCHHHHH
Confidence 6899999999999999988 99999544433 33344333
No 113
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.89 E-value=0.0022 Score=41.14 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=33.1
Q ss_pred CCEEEEecCCChhHHHHHHHHHhc----CC---CCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFADL----NE---QPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~l----gv---~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
.-++.|..+||+.|+.....|+++ +- ...++.+|-+++. + +.+.-+..++||..
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~----~~~~~~v~~~Pt~~ 78 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-E----LCSEFQVRGYPTLL 78 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-h----hHhhcCCCcCCEEE
Confidence 356789999999999877666433 21 3445555544332 2 22233566789864
No 114
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.86 E-value=0.0041 Score=38.67 Aligned_cols=53 Identities=4% Similarity=-0.199 Sum_probs=43.1
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
++.+|..+.|+.|.++.-+|...|++|+.+.++. .+..+.+...++...+|+.
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~----~~~~~~~~~~~p~~~vP~l 53 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTY----EEWQESLKPKMLFGQLPCF 53 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH----HHhhhhhhccCCCCCCCEE
Confidence 3578888899999999999999999999988875 2233456678888888874
No 115
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=96.86 E-value=0.0046 Score=38.54 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=34.2
Q ss_pred EEEEecC-------CChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccc
Q 033975 49 IVIFSKS-------YCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRT 103 (107)
Q Consensus 49 Vvvfsks-------~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~ 103 (107)
+++|..+ .||||.+++-+|...|++|+.++++.. ..++...+|+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~g~vPv 52 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPKGKLPF 52 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCCCCCCE
Confidence 4667777 579999999999999999998887631 4556666665
No 116
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=96.86 E-value=0.0018 Score=42.10 Aligned_cols=53 Identities=17% Similarity=0.180 Sum_probs=32.7
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC----CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg----v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-++.|..+|||.|++....+.++. -...+..+|-+.+ .+ +.+.-|.+++||..
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-~~----~~~~~~i~~~Pt~~ 78 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-ES----LCQQANIRAYPTIR 78 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HH----HHHHcCCCcccEEE
Confidence 467899999999998877775433 2234444443332 22 22334777899864
No 117
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=96.79 E-value=0.0047 Score=40.09 Aligned_cols=53 Identities=9% Similarity=0.103 Sum_probs=32.3
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC----CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg----v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-++.|..+|||+|+..+..|+++. -...+..||-+++ .+ +.+.-+-+++||..
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-~~----~~~~~~v~~~Pt~~ 77 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-RM----LCRSQGVNSYPSLY 77 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-HH----HHHHcCCCccCEEE
Confidence 466899999999998887776443 2233444443332 22 22333566788863
No 118
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.79 E-value=0.0021 Score=47.51 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=38.2
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 51 vfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+|....||||.+++-+|..+|++|+.++++..+... ..+.++...+|+.
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~-----~~~~np~g~vP~l 50 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEET-----PIRMIGAKQVPIL 50 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchh-----HHHhcCCCCcceE
Confidence 688899999999999999999999988875443211 1456777788863
No 119
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.78 E-value=0.0047 Score=39.59 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=32.3
Q ss_pred CEEEEecCCChhHHHHHHHHHhc----C--CCCEEEEccCCCC-chHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADL----N--EQPFVVELDLRVY-SFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~l----g--v~~~vidID~~~d-~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-++.|..+|||+|++....+.++ + -...+..+|.+.+ ..++. +.-|..++||..
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~----~~~~i~~~Pt~~ 80 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALK----EEYNVKGFPTFK 80 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHH----HhCCCccccEEE
Confidence 47799999999999887555432 2 2234444444332 33333 334667799853
No 120
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.77 E-value=0.0036 Score=44.15 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=32.8
Q ss_pred CEEEEecCCChhHHHHHHHHHhc----C--CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADL----N--EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~l----g--v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-|+.|..+||++|+.....|.++ + +.+..+++|.... .++ .+.-+...+||..
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~-~~~----~~~~~V~~iPt~v 81 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW-LPE----IDRYRVDGIPHFV 81 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc-HHH----HHHcCCCCCCEEE
Confidence 46689999999999888777643 2 3344555553321 222 2234667799865
No 121
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.77 E-value=0.0029 Score=41.67 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=31.3
Q ss_pred CEEEEecCCChhHHHHHHHHHhc----CCC-CEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADL----NEQ-PFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~l----gv~-~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
-++.|..+|||.|+.....|.++ +-. ..++.+|.+ + .+ +.+.-+..++||.
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~----~~~~~~v~~~Pt~ 75 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-ID----TLKRYRGKCEPTF 75 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HH----HHHHcCCCcCcEE
Confidence 36799999999999888777643 311 234444433 2 22 2344466778874
No 122
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0018 Score=42.86 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.6
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~ 81 (107)
-++|....||.|.-+++.|++++++|+.+||..
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~ 36 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITE 36 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhh
Confidence 389999999999999999999999999999953
No 123
>PRK09381 trxA thioredoxin; Provisional
Probab=96.74 E-value=0.0059 Score=40.09 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=32.8
Q ss_pred CCEEEEecCCChhHHHHHHHHHh----cCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFAD----LNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~----lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.-++.|..+|||+|+.....|++ ++-.+.++.+|.+.+. + +.+..+-.++||.
T Consensus 23 ~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~-~----~~~~~~v~~~Pt~ 79 (109)
T PRK09381 23 AILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-G----TAPKYGIRGIPTL 79 (109)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh-h----HHHhCCCCcCCEE
Confidence 35778999999999988777753 4333444444433322 2 2233466779985
No 124
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.73 E-value=0.0077 Score=37.99 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=34.0
Q ss_pred CCEEEEecCCChhHHHHHHHHHhc----CCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~l----gv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
.-++.|..+||++|+.....|+++ +-...++.+|.+.+.. +.+.-|..++||..
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-----~~~~~~v~~~P~~~ 73 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD-----IAAKYGIRSIPTLL 73 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH-----HHHHcCCCcCCEEE
Confidence 457789999999999988777653 3234555555443322 22234667788753
No 125
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.73 E-value=0.0044 Score=39.50 Aligned_cols=53 Identities=9% Similarity=0.188 Sum_probs=34.3
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC----CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN----EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg----v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-++.|..+||+.|++.+..|+++. ..+..+.+|.++. .++ .+.-|..++||..
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-~~~----~~~~~i~~~Pt~~ 73 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-PEI----SEKFEITAVPTFV 73 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-HHH----HHhcCCccccEEE
Confidence 367899999999999988887533 3456666664432 222 2333556699853
No 126
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=96.69 E-value=0.0041 Score=38.18 Aligned_cols=52 Identities=6% Similarity=-0.102 Sum_probs=41.7
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
++|..+.|+.|.+++-+|...|++|+.+++|..+. ....+.+.++...+|+.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~---~~~~~~~~~p~~~vP~L 53 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW---PELDLKPTLPFGQLPVL 53 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh---hhhhhccCCcCCCCCEE
Confidence 67888999999999999999999999988874321 11236778999999964
No 127
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=96.67 E-value=0.0047 Score=45.34 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=43.1
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+.+|+.+.||+|.++.-+|...|++|+.+.+|... ..+.+.++++...+|+-
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~----~~~~~~~~nP~g~VPvL 62 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDN----LPQDLIDLNPYQSVPTL 62 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCccc----CCHHHHHhCCCCCCCEE
Confidence 478999999999999999999999999999998532 12345567888888863
No 128
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.66 E-value=0.0071 Score=47.25 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=41.2
Q ss_pred HHHhhhcCCCEEEEecCCChhHHHHHHHHH----hcCCCCEEEEccCCCCch----HhhhcccCCCCCCCccccc
Q 033975 39 FVQNSIFSNKIVIFSKSYCPYCLRAKRIFA----DLNEQPFVVELDLRVYSF----GSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 39 ~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~----~lgv~~~vidID~~~d~~----~i~~~L~~~tg~~s~P~~~ 105 (107)
.++++....-++.|..+|||+|+.....|. ++|+....|++|..+... .....+.+.-|...+||.+
T Consensus 160 ~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~ 234 (271)
T TIGR02740 160 VMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVF 234 (271)
T ss_pred HHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEE
Confidence 455555566788899999999997766654 566666667777543210 0001123344677788864
No 129
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=96.62 E-value=0.0048 Score=41.38 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=32.3
Q ss_pred CCEEEEecCCChhHHHHHHHHH----hc---CCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFA----DL---NEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~----~l---gv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
.-++.|..+|||.|+.....|. ++ ++.+..+|+|..+ + +.+.-|..++||..
T Consensus 26 ~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~---~----l~~~~~V~~~Pt~~ 84 (111)
T cd02963 26 PYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER---R----LARKLGAHSVPAIV 84 (111)
T ss_pred eEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH---H----HHHHcCCccCCEEE
Confidence 3577899999999997776654 33 2334445554332 2 33334678899864
No 130
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.59 E-value=0.0035 Score=42.04 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=33.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCC---CEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~---~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
++.|..+||+.|+.....|+++.-. ...+.+|.+.+ .+.+.-+..++||.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~------~l~~~~~i~~~Pt~ 80 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA------FLVNYLDIKVLPTL 80 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh------HHHHhcCCCcCCEE
Confidence 5679999999999988888754322 24455554433 34445577789985
No 131
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.55 E-value=0.0056 Score=46.42 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=46.3
Q ss_pred HHHHHhhhcCCCEEEEecCCChhHHHHHHHH----HhcCCCCEEEEccCCCCc--h--HhhhcccCCCCCCCccccc
Q 033975 37 SAFVQNSIFSNKIVIFSKSYCPYCLRAKRIF----ADLNEQPFVVELDLRVYS--F--GSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 37 k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL----~~lgv~~~vidID~~~d~--~--~i~~~L~~~tg~~s~P~~~ 105 (107)
...++.+-....+++|..+.||||....-+| +++|+....|++|..... . .....+.+.-|-..+|+.+
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 4456777777889999999999999755555 578888888998854211 0 1122233344667788765
No 132
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=96.55 E-value=0.0096 Score=42.97 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=28.2
Q ss_pred cCCCEEEEecCCChhHHHHHHHHH----hcCCCCEEEEccCC
Q 033975 45 FSNKIVIFSKSYCPYCLRAKRIFA----DLNEQPFVVELDLR 82 (107)
Q Consensus 45 ~~~~Vvvfsks~CPyC~~aK~lL~----~lgv~~~vidID~~ 82 (107)
.+..++.|..+|||+|++-.-.|. ++++....|++|..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 566799999999999997665554 45666666777654
No 133
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.46 E-value=0.0024 Score=40.56 Aligned_cols=52 Identities=23% Similarity=0.419 Sum_probs=33.7
Q ss_pred CEEEEecCCChhHHHHHHHHHh-------cCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFAD-------LNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~-------lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-++.|+.+||++|+..++.+-. +.-+|..+.+|.+++..+.+ +.. .| +|++.
T Consensus 20 vlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~--~~~-~~---~P~~~ 78 (82)
T PF13899_consen 20 VLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ--FDR-QG---YPTFF 78 (82)
T ss_dssp EEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH--HHH-CS---SSEEE
T ss_pred EEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH--hCC-cc---CCEEE
Confidence 3668999999999988766622 34467777777655444431 111 34 88864
No 134
>PRK15113 glutathione S-transferase; Provisional
Probab=96.46 E-value=0.0075 Score=44.35 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=44.4
Q ss_pred CCEEEEecC--CChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccc
Q 033975 47 NKIVIFSKS--YCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRT 103 (107)
Q Consensus 47 ~~Vvvfsks--~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~ 103 (107)
+.+++|+.+ .||+|.++.-+|...|++|+.+.+|..+. ....+.+.+.++...+|+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~-~~~~~~~~~~nP~g~VP~ 61 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAG-EHLQPTYQGYSLTRRVPT 61 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCc-cccCHHHHhcCCCCCCCE
Confidence 457899965 79999999999999999999998876432 333455667888888886
No 135
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=96.44 E-value=0.0072 Score=37.21 Aligned_cols=54 Identities=4% Similarity=-0.144 Sum_probs=42.1
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+|..+..|+|.++.-+|...|++|+.++++..... ...+.+.+.++...+|+.
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~-~~~~~~~~~nP~~~vP~L 55 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGG-LDTPEFLAMNPNGRVPVL 55 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEecccccc-ccCHHHHhhCCCCCCCEE
Confidence 589999999999999999999999999888754322 223345567888888863
No 136
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=96.41 E-value=0.0037 Score=42.88 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=21.7
Q ss_pred hcCC--CEEEEecCCChhHHHHHHHHHhcC
Q 033975 44 IFSN--KIVIFSKSYCPYCLRAKRIFADLN 71 (107)
Q Consensus 44 i~~~--~Vvvfsks~CPyC~~aK~lL~~lg 71 (107)
+.++ -++.|..+||++|+..+..|+++.
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la 55 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVA 55 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 4444 466899999999999888887554
No 137
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.38 E-value=0.0088 Score=39.16 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=32.0
Q ss_pred CCEEEEecCCChhHHHHHHHHHh----c---CCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFAD----L---NEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~----l---gv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
.-++.|..+|||+|++....|++ + +....+..+|.+.. .+ +.+.-+-.++||..
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~----~~~~~~I~~~Pt~~ 77 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SS----IASEFGVRGYPTIK 77 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-Hh----HHhhcCCccccEEE
Confidence 34678999999999977766643 2 33344444443322 22 33445667788853
No 138
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.37 E-value=0.0069 Score=37.52 Aligned_cols=53 Identities=13% Similarity=0.028 Sum_probs=39.9
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+|..+.|+ |.+++-+|...|++|+.+++|..+. ....+.+.+.++...+|+.
T Consensus 2 ~Ly~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~np~~~vP~l 54 (77)
T cd03057 2 KLYYSPGAC-SLAPHIALEELGLPFELVRVDLRTK-TQKGADYLAINPKGQVPAL 54 (77)
T ss_pred EEEeCCCCc-hHHHHHHHHHcCCCceEEEEecccC-ccCCHhHHHhCCCCCCCEE
Confidence 578888764 8899999999999999988876543 2233445578888888863
No 139
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.33 E-value=0.0027 Score=40.39 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=32.6
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC----C--CCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN----E--QPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg----v--~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-+++|..+||+.|++....|.+.. - ...++.+|.+.+ .++. +.-|..++|+..
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~----~~~~i~~~P~~~ 74 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-KDLA----SRFGVSGFPTIK 74 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-HHHH----HhCCCCcCCEEE
Confidence 478999999999998776665422 1 244555554333 3332 223456699864
No 140
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.25 E-value=0.016 Score=49.56 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=31.7
Q ss_pred EEEEecCCChhHHHHHHH-H------HhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 49 IVIFSKSYCPYCLRAKRI-F------ADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~l-L------~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
++.|+.+||++|+..+.. + ++++ ++..+.+|.+++..+.++ +.+.-|..++||..
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~-l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVA-LLKHYNVLGLPTIL 539 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHH-HHHHcCCCCCCEEE
Confidence 456999999999987654 2 2232 355555554433333333 33334667799864
No 141
>PRK10996 thioredoxin 2; Provisional
Probab=96.18 E-value=0.028 Score=39.30 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=37.2
Q ss_pred HHhhhcCC--CEEEEecCCChhHHHHHHHHHh----cCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 40 VQNSIFSN--KIVIFSKSYCPYCLRAKRIFAD----LNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 40 v~~~i~~~--~Vvvfsks~CPyC~~aK~lL~~----lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.++++++. -++.|+.+|||+|+.....|.+ ++-.+.++.+|.+++ .+ +.+.-|..++||.
T Consensus 45 ~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-~~----l~~~~~V~~~Ptl 110 (139)
T PRK10996 45 LDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-RE----LSARFRIRSIPTI 110 (139)
T ss_pred HHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-HH----HHHhcCCCccCEE
Confidence 33444433 4779999999999987777754 333455656654433 23 3334466779985
No 142
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.17 E-value=0.0058 Score=38.58 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=30.4
Q ss_pred CEEEEecCCChhHHHHHH----HHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKR----IFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~----lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
+|.+| .++||+|..+.+ ++.+++++++++|+ .+.+++ ..-|-.++|+..
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~-----~~ygv~~vPalv 54 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEI-----EKYGVMSVPALV 54 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHH-----HHTT-SSSSEEE
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHH-----HHcCCCCCCEEE
Confidence 46675 555999996665 45567777777775 334443 334566677753
No 143
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.10 E-value=0.052 Score=41.58 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=34.3
Q ss_pred CCEEEEecCCChhHHHHHHHHHhc----CCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFADL----NEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~l----gv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
.-++.|..+|||+|++.+..++++ +-...+..+|.+.+ .+ +.+.-+..++||..
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-~~----l~~~~~I~~~PTl~ 111 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-LN----LAKRFAIKGYPTLL 111 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-HH----HHHHcCCCcCCEEE
Confidence 357899999999999988887654 32234445554433 22 23334667799864
No 144
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=96.09 E-value=0.014 Score=37.21 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=19.1
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN 71 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg 71 (107)
-++.|..+||++|+.....|.++.
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~ 44 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELA 44 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHH
Confidence 467899999999998877775443
No 145
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=95.97 E-value=0.016 Score=44.60 Aligned_cols=47 Identities=15% Similarity=-0.011 Sum_probs=37.5
Q ss_pred cCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 54 KSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 54 ks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
...||||+++.-+|...|++|+++++|.... .+.+.++++...+|+-
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~----~~~fl~inP~g~vPvL 62 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRK----PEDLQNLAPGTHPPFL 62 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCC----CHHHHHHCcCCCCCEE
Confidence 3559999999999999999999999986643 2346678888888864
No 146
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=95.89 E-value=0.016 Score=38.91 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=29.4
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCC--CCEEEEccCCCCchHhhhcc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNE--QPFVVELDLRVYSFGSGRPT 92 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv--~~~vidID~~~d~~~i~~~L 92 (107)
-|+.|..+|||.|.+....|+++.- ++.++-|+.+++..++++.+
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~ 74 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWL 74 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHH
Confidence 4778999999999987777765432 25566665444444444433
No 147
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.84 E-value=0.024 Score=36.04 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=34.0
Q ss_pred CEEEEecCCChhHHHHHHHH----HhcC--CCCEEEEccCCCCchHhhhcccCC
Q 033975 48 KIVIFSKSYCPYCLRAKRIF----ADLN--EQPFVVELDLRVYSFGSGRPTHRP 95 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL----~~lg--v~~~vidID~~~d~~~i~~~L~~~ 95 (107)
-++.|..+|||.|.+....| ++++ -.+.+|=|..+++..+.++.+++.
T Consensus 4 ~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 4 VLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 36789999999999655554 4555 566777777677778888888877
No 148
>PTZ00102 disulphide isomerase; Provisional
Probab=95.80 E-value=0.093 Score=42.53 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=36.7
Q ss_pred HHHhhhcCC--CEEEEecCCChhHHHHHHHHHh-------cCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 39 FVQNSIFSN--KIVIFSKSYCPYCLRAKRIFAD-------LNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 39 ~v~~~i~~~--~Vvvfsks~CPyC~~aK~lL~~-------lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
..++.+.++ -++.|..+|||+|++....+.+ .+.+..+..+|-+.+. + +.+.-|..++||..
T Consensus 41 ~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-~----l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 41 TFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-E----LAQEFGVRGYPTIK 111 (477)
T ss_pred hHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-H----HHHhcCCCcccEEE
Confidence 344455444 5778999999999977654432 2334555555544332 2 33334566799865
No 149
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=95.80 E-value=0.021 Score=41.07 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=31.5
Q ss_pred CEEEEecCCChhHHHHHHHHHhc----C--------CCCEEEEccCCCCchHhhhcccCC
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADL----N--------EQPFVVELDLRVYSFGSGRPTHRP 95 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~l----g--------v~~~vidID~~~d~~~i~~~L~~~ 95 (107)
-++-|..+|||.|++..-.|.++ + -.+.+|-|+.+++.++.++.+.++
T Consensus 28 vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~ 87 (146)
T cd03008 28 LLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM 87 (146)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC
Confidence 46689999999999877666542 1 135666666555555555555543
No 150
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.015 Score=42.47 Aligned_cols=63 Identities=22% Similarity=0.234 Sum_probs=42.3
Q ss_pred hHHHHHHhhhcCC-C-EEEEecCCChhHHHHHHHHHhcC------CCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 35 SVSAFVQNSIFSN-K-IVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 35 ~~k~~v~~~i~~~-~-Vvvfsks~CPyC~~aK~lL~~lg------v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+..++-+.++++. + ++.|..+||.-|+...-.|+++- +.+..+|+|++.+ |..--+.+.+||+
T Consensus 49 s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-------la~~Y~I~avPtv 119 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-------LAEDYEISAVPTV 119 (150)
T ss_pred CHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-------hHhhcceeeeeEE
Confidence 4566777777544 4 55899999999998887777554 3345677776655 3334455667775
No 151
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.61 E-value=0.033 Score=43.68 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=47.3
Q ss_pred HHHHHHhhhcCCCEEEEecCCChhHHHHHHHH----HhcCCCCEEEEccCCCC--chH--hhhcccCCCCCCCccccc
Q 033975 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIF----ADLNEQPFVVELDLRVY--SFG--SGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 36 ~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL----~~lgv~~~vidID~~~d--~~~--i~~~L~~~tg~~s~P~~~ 105 (107)
....++.+-+...+++|.++.||||.+.--+| +++|+....|.+|.... -.+ ....+.+.-|...+|+.+
T Consensus 141 ~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~ 218 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALY 218 (256)
T ss_pred HHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEE
Confidence 34467777788899999999999999754444 67889888899886622 111 112233344566788765
No 152
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.02 Score=41.73 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=44.6
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccc
Q 033975 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRT 103 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~ 103 (107)
.+|..+.+|||.++.-++..+|++|+.+.+|... ....+.+...++...+|+
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~gkVPv 53 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPLGKVPA 53 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCCCCCCE
Confidence 5788888899999999999999999999998776 555666888888888885
No 153
>PLN02309 5'-adenylylsulfate reductase
Probab=95.54 E-value=0.067 Score=45.05 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=32.9
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCC-----CCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNE-----QPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv-----~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-++.|..+|||+|+..+..|.++.- ...+..+|-+.+..++.. +.-+..++||..
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~---~~~~I~~~PTil 427 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAK---QELQLGSFPTIL 427 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHH---hhCCCceeeEEE
Confidence 5779999999999988888865531 244455544422222211 123455688863
No 154
>PLN02473 glutathione S-transferase
Probab=95.54 E-value=0.029 Score=40.81 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=41.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRT 103 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~ 103 (107)
+.+|+.+.+|+|.++.=+|..+|++|+.+.+|..+.... .+.+...++...+|+
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~-~~~~~~~nP~g~vP~ 56 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQK-KPEHLLRQPFGQVPA 56 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccC-CHHHHhhCCCCCCCe
Confidence 578999999999999999999999999988875532222 222334677778886
No 155
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=95.51 E-value=0.02 Score=41.23 Aligned_cols=37 Identities=14% Similarity=0.380 Sum_probs=26.5
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCC------CEEEEccCCCC
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQ------PFVVELDLRVY 84 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~------~~vidID~~~d 84 (107)
-|+-|+.+|||-|+....+|.++.-. +..||+|+.++
T Consensus 26 VVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d 68 (142)
T PLN00410 26 VVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD 68 (142)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH
Confidence 35689999999999998888765522 24567765543
No 156
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.44 E-value=0.046 Score=42.68 Aligned_cols=69 Identities=6% Similarity=-0.013 Sum_probs=44.9
Q ss_pred HHHHHhhhcCCCEEEEecCCChhHHHHH----HHHHhcCCCCEEEEccCCCCch--H--hhhcccCCCCCCCccccc
Q 033975 37 SAFVQNSIFSNKIVIFSKSYCPYCLRAK----RIFADLNEQPFVVELDLRVYSF--G--SGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 37 k~~v~~~i~~~~Vvvfsks~CPyC~~aK----~lL~~lgv~~~vidID~~~d~~--~--i~~~L~~~tg~~s~P~~~ 105 (107)
...++.+-.+..++.|.++.||||.+.- .+=+++|+....|.+|...... + ........-|...+|+.+
T Consensus 135 ~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~ 211 (248)
T PRK13703 135 RQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALM 211 (248)
T ss_pred HHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEE
Confidence 3357777788899999999999999644 4445788888888888643211 1 111122344556677754
No 157
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.38 E-value=0.039 Score=40.39 Aligned_cols=64 Identities=9% Similarity=-0.017 Sum_probs=39.1
Q ss_pred hHHHHHHhhhcCC----CEEEEecCCChhHHHHHHHHHhcCC---CCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 35 SVSAFVQNSIFSN----KIVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 35 ~~k~~v~~~i~~~----~Vvvfsks~CPyC~~aK~lL~~lgv---~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+...+.+.+.... -|+-|..+|||.|+.....|.++-- ....+.||.+.. .+...-+.+++||.
T Consensus 69 ~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~------~l~~~f~v~~vPTl 139 (175)
T cd02987 69 SGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT------GASDEFDTDALPAL 139 (175)
T ss_pred CHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch------hhHHhCCCCCCCEE
Confidence 3355555554432 3556999999999988877765432 234555554432 24444567789986
No 158
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=95.34 E-value=0.0099 Score=40.21 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=32.1
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCC-------CCEEEEccCCC-CchHhhhcccCCCCCCCccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNE-------QPFVVELDLRV-YSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv-------~~~vidID~~~-d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
-++.|..+|||.|+..+..|.++.- ...+..+|-+. ...+ +.+.-+.+.+||..
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~----~~~~~~i~~~Pt~~ 83 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVA----LCRDFGVTGYPTLR 83 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHH----HHHhCCCCCCCEEE
Confidence 4668999999999988877765432 13344454322 1222 22333556789864
No 159
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=95.31 E-value=0.023 Score=41.07 Aligned_cols=54 Identities=11% Similarity=-0.135 Sum_probs=41.9
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 51 vfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+|+...||+|.++.-+|..+|++|+.+.++..+.+....+.+.+.++...+|+-
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L 55 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTL 55 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEE
Confidence 688888999999999999999999988887533223333556778888888863
No 160
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=95.31 E-value=0.023 Score=35.68 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=29.4
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHhcC-------CCCEEEEccCCCCchHhhhcccCC
Q 033975 45 FSNKIVIFSKSYCPYCLRAKRIFADLN-------EQPFVVELDLRVYSFGSGRPTHRP 95 (107)
Q Consensus 45 ~~~~Vvvfsks~CPyC~~aK~lL~~lg-------v~~~vidID~~~d~~~i~~~L~~~ 95 (107)
...-++.|..+|||+|.+....|.++. +.+..|++|.. +.+++++.+.+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~-~~~~~~~~~~~~ 75 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD-DPAAVKAFLKKY 75 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC-CHHHHHHHHHHc
Confidence 334678899999999996655554332 33344555443 255555554443
No 161
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.29 E-value=0.056 Score=43.10 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=37.2
Q ss_pred HHhhhcCCC--EEEEecCCChhHHHHHHHHH-------hcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 40 VQNSIFSNK--IVIFSKSYCPYCLRAKRIFA-------DLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 40 v~~~i~~~~--Vvvfsks~CPyC~~aK~lL~-------~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
.+..++.++ ++.|..+||++|++....+. +.+-+..+..+|-+.+ .+ +.+.-|..++||..
T Consensus 11 ~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~----l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 11 FDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KD----LAQKYGVSGYPTLK 80 (462)
T ss_pred HHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HH----HHHhCCCccccEEE
Confidence 344455554 67899999999998765554 2333355666665544 22 33334666788863
No 162
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.24 E-value=0.021 Score=43.54 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=24.7
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC---CCCEEEEc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN---EQPFVVEL 79 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg---v~~~vidI 79 (107)
.|++|+-+.||||++..+.+.++. +...++.+
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~ 144 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDYNALGITVRYLAF 144 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEec
Confidence 488999999999999998888753 44444433
No 163
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=95.21 E-value=0.03 Score=40.75 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=26.6
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC-CCCEEEEccCCCCchHhhhc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN-EQPFVVELDLRVYSFGSGRP 91 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg-v~~~vidID~~~d~~~i~~~ 91 (107)
-++.|..+|||+|++-...|.++. -...++-|+.+++.++.++.
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~ 115 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISW 115 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHH
Confidence 466799999999998666665443 12445555444444444433
No 164
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.11 Score=38.76 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=41.0
Q ss_pred hHHHHHHhhhcCC--CEEEEecCCChhHHHHHHHHHhcC-------CCCE--EEEccCC---------CCchHhhhcccC
Q 033975 35 SVSAFVQNSIFSN--KIVIFSKSYCPYCLRAKRIFADLN-------EQPF--VVELDLR---------VYSFGSGRPTHR 94 (107)
Q Consensus 35 ~~k~~v~~~i~~~--~Vvvfsks~CPyC~~aK~lL~~lg-------v~~~--vidID~~---------~d~~~i~~~L~~ 94 (107)
+..+-.+.+.... -+.||+.++|+||.+.|+-+..-. -.+. .+++... .+...-.+.|.+
T Consensus 30 ~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~ 109 (182)
T COG2143 30 DVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQ 109 (182)
T ss_pred hhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHH
Confidence 3344444444444 377999999999998887664211 1233 3333211 111223346778
Q ss_pred CCCCCCccccc
Q 033975 95 PTNLCEWRTHW 105 (107)
Q Consensus 95 ~tg~~s~P~~~ 105 (107)
.-+.++.||-.
T Consensus 110 kf~vrstPtfv 120 (182)
T COG2143 110 KFAVRSTPTFV 120 (182)
T ss_pred HhccccCceEE
Confidence 88888899843
No 165
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.017 Score=39.42 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=31.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCC---EEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQP---FVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~---~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
|+-|+.+|||-|+..+-.+.++-..| ..+.+|.++ ..+ +.+--+.+..||.
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~~~----~~~~~~V~~~PTf 78 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-LEE----VAKEFNVKAMPTF 78 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-CHh----HHHhcCceEeeEE
Confidence 45599999999999998888776554 333333333 222 3333445556663
No 166
>PLN02378 glutathione S-transferase DHAR1
Probab=95.11 E-value=0.033 Score=41.11 Aligned_cols=45 Identities=11% Similarity=-0.002 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccc
Q 033975 55 SYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRT 103 (107)
Q Consensus 55 s~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~ 103 (107)
..||||.++.-+|..+|++|+.+.+|...... .+.+.++...+|+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~----~~l~inP~G~VPv 62 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKPQ----WFLDISPQGKVPV 62 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCCH----HHHHhCCCCCCCE
Confidence 45999999999999999999998888653222 3556788888885
No 167
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.11 E-value=0.046 Score=33.94 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=38.4
Q ss_pred cCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 54 KSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 54 ks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
...||+|.++.-+|...|++|+.+.++..+. +..+.+.+.++...+|+.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~--~~~~~~~~~nP~g~vP~L 55 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTP--DTRARILEFSPTGKVPVL 55 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc--cccHHHHhhCCCCcCCEE
Confidence 4679999999999999999999888875432 123456678888888864
No 168
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.07 E-value=0.032 Score=40.79 Aligned_cols=34 Identities=15% Similarity=0.434 Sum_probs=25.4
Q ss_pred CCCEEEEecCCChhHHHHHHHHHh--cCCCCEEEEc
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFAD--LNEQPFVVEL 79 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~--lgv~~~vidI 79 (107)
...|++|+-+.||||++..+.+.+ .++.+.++-+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 346889999999999999999974 3344444444
No 169
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=94.99 E-value=0.067 Score=36.09 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=16.1
Q ss_pred CEEEEecCCChhHHHHHHHHH
Q 033975 48 KIVIFSKSYCPYCLRAKRIFA 68 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~ 68 (107)
-++.|..+|||.|++....|.
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEEECCCChHHHHHhHHHH
Confidence 466788999999997655554
No 170
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=94.98 E-value=0.048 Score=37.19 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=16.1
Q ss_pred CEEEEecCCChhHHHHHHHHH
Q 033975 48 KIVIFSKSYCPYCLRAKRIFA 68 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~ 68 (107)
-++.|..+|||.|+.....|.
T Consensus 20 vll~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 20 VGLYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEEEECCCCchHHHHHHHHH
Confidence 456788999999998655553
No 171
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=94.97 E-value=0.035 Score=38.80 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=27.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcC------CCCEEEEccCCCCc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLRVYS 85 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lg------v~~~vidID~~~d~ 85 (107)
|+=|+.+|||-|+..-.+|.++- +.+..+|+|+.++-
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dv 60 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVY 60 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHH
Confidence 45699999999999888887655 23456777766553
No 172
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=94.94 E-value=0.094 Score=37.27 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=19.1
Q ss_pred HHhhhcCCC--EEEEecCCChhHHHHHHHH
Q 033975 40 VQNSIFSNK--IVIFSKSYCPYCLRAKRIF 67 (107)
Q Consensus 40 v~~~i~~~~--Vvvfsks~CPyC~~aK~lL 67 (107)
++..-++++ ++.|...|||+|++.++.+
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 334444443 4578999999999877654
No 173
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=94.88 E-value=0.025 Score=39.19 Aligned_cols=55 Identities=5% Similarity=-0.040 Sum_probs=36.1
Q ss_pred cCCCEEEEecCC--ChhHHHHHHHHHhcCCC----CEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 45 FSNKIVIFSKSY--CPYCLRAKRIFADLNEQ----PFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 45 ~~~~Vvvfsks~--CPyC~~aK~lL~~lgv~----~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
....|+.|+.+| ||.|+..+-+|.++--. ..++.+|.+++. .|...-+-+++||.
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-----~la~~f~V~sIPTl 87 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-----ALAARFGVLRTPAL 87 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-----HHHHHcCCCcCCEE
Confidence 355788899996 99999988888654432 233344444332 34555578889985
No 174
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=94.88 E-value=0.055 Score=39.60 Aligned_cols=54 Identities=9% Similarity=-0.033 Sum_probs=42.1
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
+.+|..+ .|+|.++.-+|..+|++|+.+++|...+ ....+.+.+.++...+|+.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~iNP~gkVP~L 55 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKG-GQFRPEFLRISPNNKIPAI 55 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCccc-ccCCHHHHhhCcCCCCCEE
Confidence 4678776 6999999999999999999988876533 3333456678999899974
No 175
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=94.82 E-value=0.044 Score=39.34 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=22.9
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCC-CCEEEEccCC
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNE-QPFVVELDLR 82 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv-~~~vidID~~ 82 (107)
-++.|..+|||.|++....|+++.- .+.++-|+.+
T Consensus 66 vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~ 101 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYK 101 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 4668899999999987666654421 2445544433
No 176
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=94.81 E-value=0.035 Score=40.83 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=38.2
Q ss_pred EEEecCCChhHH----HHHHHHHhcCC---CCEEEEccCCCCchHhhhcccCCCC
Q 033975 50 VIFSKSYCPYCL----RAKRIFADLNE---QPFVVELDLRVYSFGSGRPTHRPTN 97 (107)
Q Consensus 50 vvfsks~CPyC~----~aK~lL~~lgv---~~~vidID~~~d~~~i~~~L~~~tg 97 (107)
..||..|||-|+ ..|++++++.- ++++|=++.+.+++++.+.+....|
T Consensus 38 lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~ 92 (157)
T KOG2501|consen 38 LYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHG 92 (157)
T ss_pred EEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCC
Confidence 378999999999 56777665554 4899999999999998888876554
No 177
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=94.71 E-value=0.082 Score=32.17 Aligned_cols=53 Identities=9% Similarity=-0.068 Sum_probs=38.2
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+|+.+. +.|.+++-+|...|++|+.+.+|.... ....+.+.+.++...+|+.
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l 54 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPG-EQAPPEYLAINPLGKVPVL 54 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCC-ccCCHHHHhcCCCCCCCEE
Confidence 4666665 678999999999999999888875321 2223345567888888863
No 178
>PTZ00062 glutaredoxin; Provisional
Probab=94.66 E-value=0.074 Score=40.27 Aligned_cols=43 Identities=14% Similarity=0.012 Sum_probs=28.6
Q ss_pred HHHhhhc---CCCEEEEecCCChhHHHHHHHHHhcCC---CCEEEEccC
Q 033975 39 FVQNSIF---SNKIVIFSKSYCPYCLRAKRIFADLNE---QPFVVELDL 81 (107)
Q Consensus 39 ~v~~~i~---~~~Vvvfsks~CPyC~~aK~lL~~lgv---~~~vidID~ 81 (107)
..+++++ ...|+.|..+|||-|+....+|.++-- .+..+.||.
T Consensus 8 e~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~ 56 (204)
T PTZ00062 8 EKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNL 56 (204)
T ss_pred HHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 3444455 225666779999999999988876653 345555553
No 179
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.1 Score=37.20 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=38.1
Q ss_pred hhHHHHHHhhhcCCCEEEE---------ecCCChhHHHHHHHHHh-cC---CC--CEEEEccCCCC----chHhhhcccC
Q 033975 34 HSVSAFVQNSIFSNKIVIF---------SKSYCPYCLRAKRIFAD-LN---EQ--PFVVELDLRVY----SFGSGRPTHR 94 (107)
Q Consensus 34 ~~~k~~v~~~i~~~~Vvvf---------sks~CPyC~~aK~lL~~-lg---v~--~~vidID~~~d----~~~i~~~L~~ 94 (107)
++.++.++..-+...+.+| .+||||+|.+|.-++.+ ++ .. +..+++..++. ...++...+.
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 4556666666666666554 24789999998876643 33 22 34455544432 2334444444
Q ss_pred CCCCCCccc
Q 033975 95 PTNLCEWRT 103 (107)
Q Consensus 95 ~tg~~s~P~ 103 (107)
+|+ +||
T Consensus 93 lt~---vPT 98 (128)
T KOG3425|consen 93 LTA---VPT 98 (128)
T ss_pred eee---cce
Confidence 555 666
No 180
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=94.57 E-value=0.043 Score=36.30 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=23.9
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCCCEEEEc
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVEL 79 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidI 79 (107)
..-++.|..+|||+|......|.++.-.+.++-|
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i 54 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSV 54 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCCEEEE
Confidence 3467789999999999887777655433444433
No 181
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=94.55 E-value=0.063 Score=41.72 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=36.4
Q ss_pred cCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 54 KSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 54 ks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
..+||||.++.-+|..+|++|+++.+|......+ +.+.++...+|+-
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~----fl~iNP~GkVPvL 116 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEW----FLKISPEGKVPVV 116 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHH----HHhhCCCCCCCEE
Confidence 4559999999999999999999988876543333 4456777788864
No 182
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.53 E-value=0.059 Score=40.15 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=39.2
Q ss_pred HHHHHHhhhcCC---C-EEEEecCCChhHHHHHHHHHhcCCC---CEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 36 VSAFVQNSIFSN---K-IVIFSKSYCPYCLRAKRIFADLNEQ---PFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 36 ~k~~v~~~i~~~---~-Vvvfsks~CPyC~~aK~lL~~lgv~---~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
...+.+++.... . |+-|+.+|||.|+.....|.++--. ..++.||.+.. ...-+.+++||..
T Consensus 89 ~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~--------~~~~~i~~lPTll 157 (192)
T cd02988 89 KPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC--------IPNYPDKNLPTIL 157 (192)
T ss_pred HHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh--------HhhCCCCCCCEEE
Confidence 356676666543 2 4569999999999998888765422 34555554321 1334667788863
No 183
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=94.53 E-value=0.076 Score=44.84 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=31.3
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC-------CCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN-------EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg-------v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
-++.|..+|||+|+..+..|+++. +.+..||+|.++. ++. .+.-+..++||.
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~---~~~~~I~~~PTi 432 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFA---KQELQLGSFPTI 432 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHH---HHHcCCCccceE
Confidence 467899999999998887776443 2334456654422 211 122244568875
No 184
>PRK10357 putative glutathione S-transferase; Provisional
Probab=94.31 E-value=0.12 Score=37.18 Aligned_cols=50 Identities=8% Similarity=-0.039 Sum_probs=39.2
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccc
Q 033975 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRT 103 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~ 103 (107)
.+|....||+++++.-+|...|++|+.++++......+ +...++...+|+
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~----~~~~nP~g~vP~ 51 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNG----VAQYNPLGKVPA 51 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchh----hhhcCCccCCCe
Confidence 58899999999999999999999999988875433332 234577777885
No 185
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=94.18 E-value=0.055 Score=35.34 Aligned_cols=23 Identities=17% Similarity=0.554 Sum_probs=17.9
Q ss_pred CCEEEEecCCChhHHHHHHHHHh
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFAD 69 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~ 69 (107)
.-++.|..+|||+|++....|.+
T Consensus 23 ~vvl~F~~~wC~~C~~~~p~l~~ 45 (114)
T cd02967 23 PTLLFFLSPTCPVCKKLLPVIRS 45 (114)
T ss_pred eEEEEEECCCCcchHhHhHHHHH
Confidence 35678899999999977666654
No 186
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.15 E-value=0.073 Score=37.69 Aligned_cols=34 Identities=15% Similarity=0.531 Sum_probs=28.3
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCCEEEEcc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD 80 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID 80 (107)
..+++|+||.|+-|+-+.++|.++.-.|+++-|+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN 36 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVN 36 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEE
Confidence 3578999999999999999999888777654443
No 187
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.01 E-value=0.093 Score=36.75 Aligned_cols=46 Identities=26% Similarity=0.554 Sum_probs=23.2
Q ss_pred hHHHHHHhhhcC-CCEE-EEe-------cCCChhHHHHH----HHHHhcCCCCEE--EEcc
Q 033975 35 SVSAFVQNSIFS-NKIV-IFS-------KSYCPYCLRAK----RIFADLNEQPFV--VELD 80 (107)
Q Consensus 35 ~~k~~v~~~i~~-~~Vv-vfs-------ks~CPyC~~aK----~lL~~lgv~~~v--idID 80 (107)
+..+.++..-.. .++. +|+ ++|||+|.+|+ +.|....-+... +.+.
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG 67 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVG 67 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE--
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcC
Confidence 445566664433 3444 443 56899999887 555554334444 4553
No 188
>PRK11752 putative S-transferase; Provisional
Probab=93.98 E-value=0.11 Score=39.98 Aligned_cols=60 Identities=5% Similarity=-0.064 Sum_probs=45.6
Q ss_pred hhcCCCEEEEecCCChhHHHHHHHHHhc------CCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 43 SIFSNKIVIFSKSYCPYCLRAKRIFADL------NEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 43 ~i~~~~Vvvfsks~CPyC~~aK~lL~~l------gv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
....+.+.+|+.+ +|+|.++.-+|.++ |++|+.+.+|..+. ....+.+.+.++...+|+-
T Consensus 39 ~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~-~~~~~e~~~iNP~GkVP~L 104 (264)
T PRK11752 39 PVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEG-DQFSSGFVEINPNSKIPAL 104 (264)
T ss_pred CCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccc-cccCHHHHhhCCCCCCCEE
Confidence 4456689999965 99999999999987 88898888875432 2234456678888889874
No 189
>PTZ00102 disulphide isomerase; Provisional
Probab=93.88 E-value=0.082 Score=42.84 Aligned_cols=23 Identities=13% Similarity=0.501 Sum_probs=19.3
Q ss_pred CEEEEecCCChhHHHHHHHHHhc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADL 70 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~l 70 (107)
-++.|..+||++|+..+..|.++
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~ 400 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNEL 400 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHH
Confidence 46689999999999988888654
No 190
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.07 Score=43.00 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=39.9
Q ss_pred HHhhhcC-CCEEEEecCCChhHHHHHHHHHhcCC----CCE--EEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 40 VQNSIFS-NKIVIFSKSYCPYCLRAKRIFADLNE----QPF--VVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 40 v~~~i~~-~~Vvvfsks~CPyC~~aK~lL~~lgv----~~~--vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
|.+-... +=++.|..|||+.|+.....|.++-. .+. .+|+|.+++ +...-|-+++|||.
T Consensus 37 V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-------vAaqfgiqsIPtV~ 102 (304)
T COG3118 37 VIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-------VAAQFGVQSIPTVY 102 (304)
T ss_pred HHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-------HHHHhCcCcCCeEE
Confidence 3333344 34668999999999999888876543 333 566665543 44456888999985
No 191
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=93.69 E-value=0.087 Score=36.85 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=16.4
Q ss_pred CCCEEEEecCCChhHHHHHHHH
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIF 67 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL 67 (107)
..-++.|..+|||+|++....|
T Consensus 62 k~~~l~f~a~~C~~C~~~~~~l 83 (173)
T PRK03147 62 KGVFLNFWGTWCKPCEKEMPYM 83 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHH
Confidence 3356789999999999754444
No 192
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.15 Score=39.62 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=34.8
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCC
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRV 83 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~ 83 (107)
+..|.+|+.-.|||-.+++=+|+..||+|+++++|..+
T Consensus 7 ~~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~ 44 (231)
T KOG0406|consen 7 DGTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN 44 (231)
T ss_pred CCeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC
Confidence 35699999999999999999999999999999998764
No 193
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.099 Score=41.71 Aligned_cols=61 Identities=7% Similarity=0.063 Sum_probs=50.5
Q ss_pred CCCEEEEecC------CChhHHHHHHHHHhcCCCCEEEEccCCCCc-hHhhhcccCCCCCCCcccccc
Q 033975 46 SNKIVIFSKS------YCPYCLRAKRIFADLNEQPFVVELDLRVYS-FGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 46 ~~~Vvvfsks------~CPyC~~aK~lL~~lgv~~~vidID~~~d~-~~i~~~L~~~tg~~s~P~~~~ 106 (107)
+++|+||+.+ +--.|..++.+|+.++|.|.+-||.-+..- .++++.|+.-....++|.||-
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV 197 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFV 197 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEE
Confidence 5589999865 477899999999999999999999866433 788999988677778998873
No 194
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.44 E-value=0.08 Score=32.30 Aligned_cols=30 Identities=23% Similarity=0.517 Sum_probs=20.1
Q ss_pred ecCCChhHHHHHHHHHhcCC----CCEEEEccCC
Q 033975 53 SKSYCPYCLRAKRIFADLNE----QPFVVELDLR 82 (107)
Q Consensus 53 sks~CPyC~~aK~lL~~lgv----~~~vidID~~ 82 (107)
..+|||+|+.....|.+..- ...++.++..
T Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~ 73 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVD 73 (127)
T ss_pred EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECC
Confidence 59999999998877765442 2345555543
No 195
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.43 E-value=0.42 Score=31.77 Aligned_cols=53 Identities=8% Similarity=-0.034 Sum_probs=31.3
Q ss_pred EEEEecCCChhHHHHHH-HHHhcC------CCCEEEEccCC-CCchHhhhcccCCCCCCCccccc
Q 033975 49 IVIFSKSYCPYCLRAKR-IFADLN------EQPFVVELDLR-VYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~-lL~~lg------v~~~vidID~~-~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
++.+..++|++|+...+ .|.+-. -.|..+.+|.. +++.++...+ +..++|+..
T Consensus 21 lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~----~~~~~P~~~ 81 (114)
T cd02958 21 LVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSY----KVDKYPHIA 81 (114)
T ss_pred EEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHh----CccCCCeEE
Confidence 55778899999997643 443222 24555555443 3555544443 456789864
No 196
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=93.41 E-value=0.12 Score=37.79 Aligned_cols=31 Identities=16% Similarity=0.461 Sum_probs=20.5
Q ss_pred CEEEEecCCChhHHHHHHHH----HhcCCCCEEEE
Q 033975 48 KIVIFSKSYCPYCLRAKRIF----ADLNEQPFVVE 78 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL----~~lgv~~~vid 78 (107)
-|+.|..+|||+|++....+ ++.++....|.
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 36679999999999654433 44455555554
No 197
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.086 Score=40.19 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=30.3
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCch
Q 033975 50 VIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSF 86 (107)
Q Consensus 50 vvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~ 86 (107)
.+|.-.-||||.+|+-++-=.|++.+++-++.+++.-
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T 38 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET 38 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccC
Confidence 3677789999999999999999999877776666543
No 198
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=92.75 E-value=0.11 Score=40.15 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=22.7
Q ss_pred CEEEEecCCChhHHHHHHHHHh---cC-CCCEEEE
Q 033975 48 KIVIFSKSYCPYCLRAKRIFAD---LN-EQPFVVE 78 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~---lg-v~~~vid 78 (107)
.|++|+=+.||||++..+-+.+ .| +.+.++.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEe
Confidence 4889999999999998776653 23 5555554
No 199
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=92.40 E-value=0.12 Score=33.94 Aligned_cols=27 Identities=15% Similarity=0.432 Sum_probs=16.0
Q ss_pred HhhhcCCCEEEEecC-CChhHHHHHHHH
Q 033975 41 QNSIFSNKIVIFSKS-YCPYCLRAKRIF 67 (107)
Q Consensus 41 ~~~i~~~~Vvvfsks-~CPyC~~aK~lL 67 (107)
+++-...-|+.|..+ |||+|.+.-..|
T Consensus 21 ~~l~gk~~vl~f~~~~~c~~c~~~l~~l 48 (124)
T PF00578_consen 21 SDLKGKPVVLFFWPTAWCPFCQAELPEL 48 (124)
T ss_dssp GGGTTSEEEEEEESTTTSHHHHHHHHHH
T ss_pred HHHCCCcEEEEEeCccCccccccchhHH
Confidence 444333445566666 999998544333
No 200
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=92.29 E-value=0.34 Score=33.03 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=24.9
Q ss_pred CEEEEecC-CChhHHHHHHHHHh-------cCCCCEEEEccCCCCchHhhhcccC
Q 033975 48 KIVIFSKS-YCPYCLRAKRIFAD-------LNEQPFVVELDLRVYSFGSGRPTHR 94 (107)
Q Consensus 48 ~Vvvfsks-~CPyC~~aK~lL~~-------lgv~~~vidID~~~d~~~i~~~L~~ 94 (107)
-|+.|..+ |||+|..-...|++ .++.+..+..+.+ .. +++.+.+
T Consensus 31 ~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~--~~-~~~~~~~ 82 (146)
T PF08534_consen 31 VVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD--PP-VREFLKK 82 (146)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS--HH-HHHHHHH
T ss_pred EEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC--HH-HHHHHHh
Confidence 36777888 99999965544433 3344444444433 22 5555444
No 201
>PLN02395 glutathione S-transferase
Probab=92.08 E-value=0.33 Score=35.14 Aligned_cols=55 Identities=9% Similarity=-0.063 Sum_probs=41.5
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+.+|..++|+ +.+++-+|..+|++|+.+.+|.... ....+.+.+.++...+|+-
T Consensus 2 ~~~ly~~~~~~-~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~~nP~g~vP~L 56 (215)
T PLN02395 2 VLKVYGPAFAS-PKRALVTLIEKGVEFETVPVDLMKG-EHKQPEYLALQPFGVVPVI 56 (215)
T ss_pred eEEEEcCCcCc-HHHHHHHHHHcCCCceEEEeccccC-CcCCHHHHhhCCCCCCCEE
Confidence 36889877754 7999999999999999988876532 3333446668888889874
No 202
>smart00594 UAS UAS domain.
Probab=91.96 E-value=0.6 Score=31.76 Aligned_cols=72 Identities=11% Similarity=-0.004 Sum_probs=40.2
Q ss_pred CcccchhHHHHHHhhhcCC--CEEEEecCCChhHHHHHH-HHHhcC------CCCEEEEccCC-CCchHhhhcccCCCCC
Q 033975 29 ATEADHSVSAFVQNSIFSN--KIVIFSKSYCPYCLRAKR-IFADLN------EQPFVVELDLR-VYSFGSGRPTHRPTNL 98 (107)
Q Consensus 29 ~~~~~~~~k~~v~~~i~~~--~Vvvfsks~CPyC~~aK~-lL~~lg------v~~~vidID~~-~d~~~i~~~L~~~tg~ 98 (107)
|..-..+..+.++..-++. .++.+..+||++|....+ +|.+-. -.+..+-+|.. ++|.++...+ +.
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~----~~ 84 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFY----KL 84 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhc----Cc
Confidence 3344445555566666653 566788899999996433 343222 13444334433 4555544444 44
Q ss_pred CCcccc
Q 033975 99 CEWRTH 104 (107)
Q Consensus 99 ~s~P~~ 104 (107)
.++|+.
T Consensus 85 ~~~P~~ 90 (122)
T smart00594 85 DSFPYV 90 (122)
T ss_pred CCCCEE
Confidence 569975
No 203
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=91.88 E-value=0.39 Score=32.27 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=21.3
Q ss_pred CEEEEecCCChhHHHHHHHH----HhcC-CCCEEEEcc
Q 033975 48 KIVIFSKSYCPYCLRAKRIF----ADLN-EQPFVVELD 80 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL----~~lg-v~~~vidID 80 (107)
-|+.|..+|||+|.+.-..| ++++ -...++-|.
T Consensus 26 vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~ 63 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVH 63 (126)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEec
Confidence 56788999999999764444 4443 234555553
No 204
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=91.87 E-value=0.15 Score=35.50 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=29.9
Q ss_pred CEEEEecCC-Ch--hHH----------HHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSY-CP--YCL----------RAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~-CP--yC~----------~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+++|..+| |+ +|+ .+.+.|.+.++.+--+|+|.+++ |.+.-|-+++||.
T Consensus 29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~-------La~~~~I~~iPTl 91 (120)
T cd03065 29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK-------VAKKLGLDEEDSI 91 (120)
T ss_pred eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH-------HHHHcCCccccEE
Confidence 455555555 54 597 23444445566666677765532 5556677788885
No 205
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.83 E-value=0.16 Score=34.19 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=19.4
Q ss_pred CCCEEEEecCCChhHHHHHHHHHh
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFAD 69 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~ 69 (107)
...|++|+-.+||||.+....+.+
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 346889999999999987766655
No 206
>PTZ00256 glutathione peroxidase; Provisional
Probab=91.75 E-value=0.34 Score=35.16 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=11.8
Q ss_pred EEEecCCChhHHHHH
Q 033975 50 VIFSKSYCPYCLRAK 64 (107)
Q Consensus 50 vvfsks~CPyC~~aK 64 (107)
+++..+|||+|.+--
T Consensus 46 v~n~atwCp~C~~e~ 60 (183)
T PTZ00256 46 VVNVACKCGLTSDHY 60 (183)
T ss_pred EEEECCCCCchHHHH
Confidence 456899999999633
No 207
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=91.60 E-value=0.62 Score=32.40 Aligned_cols=64 Identities=16% Similarity=0.031 Sum_probs=38.1
Q ss_pred HHhhhcCCC--EEEEec--CCCh---hHHHHHHHHHhcC--CCCEEEEccCCCCchHhhhcccCCCCCC--Cccccc
Q 033975 40 VQNSIFSNK--IVIFSK--SYCP---YCLRAKRIFADLN--EQPFVVELDLRVYSFGSGRPTHRPTNLC--EWRTHW 105 (107)
Q Consensus 40 v~~~i~~~~--Vvvfsk--s~CP---yC~~aK~lL~~lg--v~~~vidID~~~d~~~i~~~L~~~tg~~--s~P~~~ 105 (107)
.+..+++++ ++.|.. |||+ +|.+.-.-+.+.. +-.-.||+|. .+..-.+.|.+.-|.. .+||.-
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d--~~~~~~~~L~~~y~I~~~gyPTl~ 85 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKD--YGEKLNMELGERYKLDKESYPVIY 85 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEeccc--ccchhhHHHHHHhCCCcCCCCEEE
Confidence 344565554 578999 8888 8887765554433 3344455543 2222234576666766 799864
No 208
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=91.58 E-value=0.25 Score=33.31 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=13.6
Q ss_pred CEEEE-ecCCChhHHHHHHHHH
Q 033975 48 KIVIF-SKSYCPYCLRAKRIFA 68 (107)
Q Consensus 48 ~Vvvf-sks~CPyC~~aK~lL~ 68 (107)
.|++| ..+|||+|.+--..|.
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~ 47 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALS 47 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHH
Confidence 44555 4789999996444443
No 209
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=91.45 E-value=0.36 Score=38.47 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=17.5
Q ss_pred CEEEEecCCChhHHHHHHHHHh
Q 033975 48 KIVIFSKSYCPYCLRAKRIFAD 69 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~ 69 (107)
-++.|..+||++|+.....+.+
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~ 388 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEE 388 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHH
Confidence 4667999999999987766654
No 210
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=91.38 E-value=0.51 Score=29.63 Aligned_cols=33 Identities=6% Similarity=-0.198 Sum_probs=29.3
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDL 81 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~ 81 (107)
+++|..+..+-|.++.-+|...|++|+.+.+|.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~ 34 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIES 34 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEecc
Confidence 468888888999999999999999999888875
No 211
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=91.38 E-value=0.35 Score=30.87 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=20.3
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhc
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFADL 70 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~l 70 (107)
.+-+++|..++|+.|...+..|.+.
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~v 37 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEV 37 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHH
Confidence 3457789999999999999888753
No 212
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=91.36 E-value=0.18 Score=30.89 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=19.3
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADL 70 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~l 70 (107)
|.+|.-..||||....+.|.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 5689999999999999888875
No 213
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=91.05 E-value=0.26 Score=34.39 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=14.1
Q ss_pred CEEEEecCCChhHHHHHHHHH
Q 033975 48 KIVIFSKSYCPYCLRAKRIFA 68 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~ 68 (107)
-++.|..+||| |.+--..|.
T Consensus 25 vvl~fwatwC~-C~~e~p~l~ 44 (152)
T cd00340 25 LLIVNVASKCG-FTPQYEGLE 44 (152)
T ss_pred EEEEEEcCCCC-chHHHHHHH
Confidence 45578999999 986444444
No 214
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=90.26 E-value=0.42 Score=32.19 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=27.2
Q ss_pred CCEEEEecCCChh-HHHHHHHHH----hcC------CCCEEEEccCC-CCchHhhhcccCC
Q 033975 47 NKIVIFSKSYCPY-CLRAKRIFA----DLN------EQPFVVELDLR-VYSFGSGRPTHRP 95 (107)
Q Consensus 47 ~~Vvvfsks~CPy-C~~aK~lL~----~lg------v~~~vidID~~-~d~~~i~~~L~~~ 95 (107)
.-|+.|..+|||+ |.+--..|+ +++ +....|.+|.. ++.+++++.+.+.
T Consensus 24 ~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~ 84 (142)
T cd02968 24 PVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAF 84 (142)
T ss_pred EEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 3577889999998 985433333 232 44444555544 3334555544443
No 215
>PTZ00056 glutathione peroxidase; Provisional
Probab=90.13 E-value=0.4 Score=35.56 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=13.6
Q ss_pred CEEEEecCCChhHHHHH
Q 033975 48 KIVIFSKSYCPYCLRAK 64 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK 64 (107)
-++.|..+|||+|.+--
T Consensus 42 vlv~fwAswC~~C~~e~ 58 (199)
T PTZ00056 42 LMITNSASKCGLTKKHV 58 (199)
T ss_pred EEEEEECCCCCChHHHH
Confidence 46689999999999633
No 216
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=90.10 E-value=0.35 Score=32.86 Aligned_cols=41 Identities=12% Similarity=-0.058 Sum_probs=26.5
Q ss_pred EEEEecCCCh------hHHHHHHHHHhcCCCCEEEEccCCCCchHhh
Q 033975 49 IVIFSKSYCP------YCLRAKRIFADLNEQPFVVELDLRVYSFGSG 89 (107)
Q Consensus 49 Vvvfsks~CP------yC~~aK~lL~~lgv~~~vidID~~~d~~~i~ 89 (107)
|.||..+.-. .+.++..+|+..+|+|+.|||..+++..+..
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~m 49 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWM 49 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHH
Confidence 5566655433 4568999999999999999998865554433
No 217
>PLN02412 probable glutathione peroxidase
Probab=89.56 E-value=0.74 Score=32.97 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=12.1
Q ss_pred CEEEEecCCChhHHH
Q 033975 48 KIVIFSKSYCPYCLR 62 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~ 62 (107)
-|+.|..+|||+|.+
T Consensus 32 vlv~f~a~~C~~c~~ 46 (167)
T PLN02412 32 LLIVNVASKCGLTDS 46 (167)
T ss_pred EEEEEeCCCCCChHH
Confidence 345688999999995
No 218
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=89.53 E-value=0.17 Score=37.35 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=25.6
Q ss_pred EEEecCCChhHHHHH-HHHHhcCC------CCEEEEcc--CCCCch-HhhhcccCCCCCCCcccc
Q 033975 50 VIFSKSYCPYCLRAK-RIFADLNE------QPFVVELD--LRVYSF-GSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 50 vvfsks~CPyC~~aK-~lL~~lgv------~~~vidID--~~~d~~-~i~~~L~~~tg~~s~P~~ 104 (107)
+-++.+||.||+... +.|.+-.| .|.-|-+| +.+|-+ -.+.+...++|+.+||+.
T Consensus 42 l~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~ 106 (163)
T PF03190_consen 42 LSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLT 106 (163)
T ss_dssp EEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEE
T ss_pred EEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCce
Confidence 356788999999544 34443332 24334444 444433 233444556788889975
No 219
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=89.18 E-value=0.38 Score=33.57 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=19.5
Q ss_pred CCCEEEEecCCChhHHHHHHHHHh
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFAD 69 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~ 69 (107)
...|+.|+-..||||.+....+.+
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 447889999999999987766654
No 220
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=88.25 E-value=1.2 Score=31.08 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=13.4
Q ss_pred EEEEecCCChhHHHHH
Q 033975 49 IVIFSKSYCPYCLRAK 64 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK 64 (107)
|++|..+|||+|.+--
T Consensus 26 vv~~~as~C~~c~~~~ 41 (153)
T TIGR02540 26 LVVNVASECGFTDQNY 41 (153)
T ss_pred EEEEeCCCCCchhhhH
Confidence 6789999999998644
No 221
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=88.22 E-value=0.61 Score=33.21 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=14.6
Q ss_pred CCCEEEEe--cCCChhHHHHHHHHH
Q 033975 46 SNKIVIFS--KSYCPYCLRAKRIFA 68 (107)
Q Consensus 46 ~~~Vvvfs--ks~CPyC~~aK~lL~ 68 (107)
.+.++|+. .+|||.|......|.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~ 53 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFS 53 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHH
Confidence 34444444 789999997554443
No 222
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=88.05 E-value=0.62 Score=31.88 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=21.8
Q ss_pred CEEEEecCCChhHHHHHHHH----Hhc----CCCCEEEEcc
Q 033975 48 KIVIFSKSYCPYCLRAKRIF----ADL----NEQPFVVELD 80 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL----~~l----gv~~~vidID 80 (107)
.|++|.-..||||.+....+ +++ .+.+..+.+-
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred EEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 58899999999999765444 444 2445555553
No 223
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=87.69 E-value=0.76 Score=39.31 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=43.5
Q ss_pred hHHHHHHhhhcCCCE--EEEecCCChhHH-------HHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 35 SVSAFVQNSIFSNKI--VIFSKSYCPYCL-------RAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 35 ~~k~~v~~~i~~~~V--vvfsks~CPyC~-------~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
-+..-.++.|..+.+ +-|..|||.+|. +|-+.|.+.+-+...-.||-..+ ..+...-+-+.+||.
T Consensus 30 Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-----~~~~~~y~v~gyPTl 103 (493)
T KOG0190|consen 30 LTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-----SDLASKYEVRGYPTL 103 (493)
T ss_pred EecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-----hhhHhhhcCCCCCeE
Confidence 345567777877754 579999999999 56677777766666777765544 234444455557764
No 224
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.97 E-value=1.2 Score=33.57 Aligned_cols=56 Identities=11% Similarity=-0.017 Sum_probs=47.0
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
++.+|+...-|-|+++.-.+..+|+.++++.+|.. .+....+.+-+++++.++|+.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~-~ge~~~pefl~~nP~~kVP~l 57 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLV-KGEQKSPEFLKLNPLGKVPAL 57 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeecc-ccccCCHHHHhcCcCCCCCeE
Confidence 46799999999999999999999999999977755 445556666699999999973
No 225
>PRK13190 putative peroxiredoxin; Provisional
Probab=86.88 E-value=0.57 Score=34.74 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=28.9
Q ss_pred CCCEEE--EecCCChhHHHHHHHH-------HhcCCCCEEEEccCCCCchHhhhcccCCCCC-CCccc
Q 033975 46 SNKIVI--FSKSYCPYCLRAKRIF-------ADLNEQPFVVELDLRVYSFGSGRPTHRPTNL-CEWRT 103 (107)
Q Consensus 46 ~~~Vvv--fsks~CPyC~~aK~lL-------~~lgv~~~vidID~~~d~~~i~~~L~~~tg~-~s~P~ 103 (107)
...+++ |..+|||.|..--..| .+.|+..-.+.+|......+..+.+.+..|. -.||.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPl 94 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPV 94 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEE
Confidence 334554 6789999999543333 3345554445544333323333333333332 34554
No 226
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=86.18 E-value=1.4 Score=33.96 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=14.7
Q ss_pred CCCEEEEecCCChhHHHHH
Q 033975 46 SNKIVIFSKSYCPYCLRAK 64 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK 64 (107)
..-|+.|..+|||.|..-.
T Consensus 100 K~vvl~FwAswCp~c~~e~ 118 (236)
T PLN02399 100 KVLLIVNVASKCGLTSSNY 118 (236)
T ss_pred CeEEEEEEcCCCcchHHHH
Confidence 3457789999999998643
No 227
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=85.88 E-value=0.76 Score=33.96 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=20.4
Q ss_pred EEecCCChhHHHHH-------HHHHhcCCCCEEEEccCC
Q 033975 51 IFSKSYCPYCLRAK-------RIFADLNEQPFVVELDLR 82 (107)
Q Consensus 51 vfsks~CPyC~~aK-------~lL~~lgv~~~vidID~~ 82 (107)
.|..++||.|..-- +-|.+.|+....|.+|..
T Consensus 32 ~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~ 70 (203)
T cd03016 32 SHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSV 70 (203)
T ss_pred EecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 47788899999633 334455665555655543
No 228
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=85.63 E-value=0.81 Score=36.12 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=42.8
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEc----c-----------CCCCchHhhhcccCCCCCCCccc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVEL----D-----------LRVYSFGSGRPTHRPTNLCEWRT 103 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidI----D-----------~~~d~~~i~~~L~~~tg~~s~P~ 103 (107)
|.+|+..+|..|--+-+.|.++.-...++-+ | ...+.-+.|.++.+..|.++++|
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyT 114 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYT 114 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCC
Confidence 6699999999999999999987744332211 1 34567789999999999998876
No 229
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=84.96 E-value=1.1 Score=30.48 Aligned_cols=19 Identities=16% Similarity=0.564 Sum_probs=12.3
Q ss_pred EEEEe-cCCChhHHHHHHHH
Q 033975 49 IVIFS-KSYCPYCLRAKRIF 67 (107)
Q Consensus 49 Vvvfs-ks~CPyC~~aK~lL 67 (107)
|++|. .+|||.|.+....|
T Consensus 32 vl~f~~~~~c~~C~~~~~~l 51 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCAL 51 (149)
T ss_pred EEEEeCCCCCccHHHHHHHH
Confidence 44444 79999999544333
No 230
>PRK10542 glutathionine S-transferase; Provisional
Probab=84.90 E-value=1.4 Score=31.42 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=34.7
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccc
Q 033975 51 IFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRT 103 (107)
Q Consensus 51 vfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~ 103 (107)
+|..++ +.+.++.-+|..+|++|+.+.+|.......-.+.+.++++...+|+
T Consensus 3 l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPv 54 (201)
T PRK10542 3 LFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPA 54 (201)
T ss_pred eeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCe
Confidence 454432 3466778899999999998888754332122344667888888886
No 231
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=84.63 E-value=1.4 Score=32.16 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=20.4
Q ss_pred cCCCEEEEe--cCCChhHHHHHHH-------HHhcCCCCEEEEccC
Q 033975 45 FSNKIVIFS--KSYCPYCLRAKRI-------FADLNEQPFVVELDL 81 (107)
Q Consensus 45 ~~~~Vvvfs--ks~CPyC~~aK~l-------L~~lgv~~~vidID~ 81 (107)
+...++||. .+|||.|..--.. |.+.|+....|..|.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 333455444 8999999963322 333455544444443
No 232
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=84.55 E-value=1.4 Score=27.35 Aligned_cols=53 Identities=8% Similarity=0.015 Sum_probs=35.0
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCC-CCccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNL-CEWRT 103 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~-~s~P~ 103 (107)
.+.+|.-++ .+..++-+|...|++|+.+.+|...... ..+.+.+.++. ..+|.
T Consensus 2 ~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~-~~~e~~~~~p~~g~vP~ 55 (76)
T PF02798_consen 2 TLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEH-KSPEFLAINPMFGKVPA 55 (76)
T ss_dssp EEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGG-GSHHHHHHTTTSSSSSE
T ss_pred EEEEECCCC--chHHHHHHHHHhcccCceEEEecccccc-cchhhhhcccccceeeE
Confidence 356777777 8889999999999999988887554332 12445555555 66765
No 233
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=84.52 E-value=1.2 Score=29.90 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=9.9
Q ss_pred EEEEe-cCCChhHHHH
Q 033975 49 IVIFS-KSYCPYCLRA 63 (107)
Q Consensus 49 Vvvfs-ks~CPyC~~a 63 (107)
++.|. ..|||.|...
T Consensus 27 ll~f~~~~~cp~C~~~ 42 (140)
T cd03017 27 VLYFYPKDDTPGCTKE 42 (140)
T ss_pred EEEEeCCCCCCchHHH
Confidence 33444 5789999853
No 234
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=84.14 E-value=1.2 Score=41.00 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=17.1
Q ss_pred CEEEEecCCChhHHHHHHHHHh
Q 033975 48 KIVIFSKSYCPYCLRAKRIFAD 69 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~ 69 (107)
-|+-|..+|||.|+...-.|.+
T Consensus 423 vll~FWAsWC~pC~~e~P~L~~ 444 (1057)
T PLN02919 423 VILDFWTYCCINCMHVLPDLEF 444 (1057)
T ss_pred EEEEEECCcChhHHhHhHHHHH
Confidence 4678999999999976655543
No 235
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=84.09 E-value=1.9 Score=30.42 Aligned_cols=49 Identities=10% Similarity=0.128 Sum_probs=27.4
Q ss_pred CCCEEEEecCCChhHHHHHHHHH----hc---CCCCEEEEccCC-----CCchHhhhcccC
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFA----DL---NEQPFVVELDLR-----VYSFGSGRPTHR 94 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~----~l---gv~~~vidID~~-----~d~~~i~~~L~~ 94 (107)
..-|+.|..+|||.|.+....|. ++ ++.+..|.+|.. ++..++++.+.+
T Consensus 26 k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~ 86 (171)
T cd02969 26 KALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKE 86 (171)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHH
Confidence 33577888999999986444443 33 233344544432 244555555543
No 236
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=83.95 E-value=3.4 Score=32.01 Aligned_cols=43 Identities=16% Similarity=0.009 Sum_probs=30.6
Q ss_pred CChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcc
Q 033975 56 YCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWR 102 (107)
Q Consensus 56 ~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P 102 (107)
.||||.++-..|-..+++|.+.-||...--+. +...++....|
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~----f~~~sp~~~~P 62 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEW----FLDISPGGKPP 62 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHH----HHhhCCCCCCC
Confidence 39999999999999999987766665544444 34455555555
No 237
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.89 E-value=1.8 Score=34.86 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=35.2
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHhcC------CCCEEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 45 FSNKIVIFSKSYCPYCLRAKRIFADLN------EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 45 ~~~~Vvvfsks~CPyC~~aK~lL~~lg------v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
+...++.|..|||++|++....+.++. ....+..+|.. ....+....+-+.+||.-
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~-----~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT-----VHKSLASRLEVRGYPTLK 223 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc-----hHHHHhhhhcccCCceEE
Confidence 444689999999999997755554333 34455555433 344455566666777753
No 238
>PRK13599 putative peroxiredoxin; Provisional
Probab=82.80 E-value=1.3 Score=33.48 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=24.1
Q ss_pred EEEecCCChhHHH-------HHHHHHhcCCCCEEEEccCCCCchHhhhccc
Q 033975 50 VIFSKSYCPYCLR-------AKRIFADLNEQPFVVELDLRVYSFGSGRPTH 93 (107)
Q Consensus 50 vvfsks~CPyC~~-------aK~lL~~lgv~~~vidID~~~d~~~i~~~L~ 93 (107)
+.|-.+|||.|.. ..+-|.+.|+..--|.+|....-.++.+.++
T Consensus 34 ~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~ 84 (215)
T PRK13599 34 FSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIK 84 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHH
Confidence 4667888999995 3333444565544555544333334444343
No 239
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=82.10 E-value=2.2 Score=28.50 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=12.6
Q ss_pred CCCEE-EEe-cCCChhHHHHHHH
Q 033975 46 SNKIV-IFS-KSYCPYCLRAKRI 66 (107)
Q Consensus 46 ~~~Vv-vfs-ks~CPyC~~aK~l 66 (107)
...++ .|. ..|||+|...-.-
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~ 44 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCA 44 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHH
Confidence 34444 334 6799999964333
No 240
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.04 E-value=1.3 Score=33.95 Aligned_cols=51 Identities=14% Similarity=0.024 Sum_probs=41.8
Q ss_pred EecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 52 FSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 52 fsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
|..++|.+ +++-.|.=.|++|+++-++.-.++++.-..+++.+++..+||-
T Consensus 11 YWrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L 61 (217)
T KOG0868|consen 11 YWRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTL 61 (217)
T ss_pred hhcccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeE
Confidence 45778876 5666677779999999999888888888889999999999973
No 241
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=80.62 E-value=3.2 Score=35.70 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=17.7
Q ss_pred EEEEecCCChhHHHHHHHHHhc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADL 70 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~l 70 (107)
++.|..+|||.|++....|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 6689999999999876666543
No 242
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=80.31 E-value=1.7 Score=32.94 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=30.2
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCE----EEEcc-----------CCCCchHhhhcccCCCCCCCc
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPF----VVELD-----------LRVYSFGSGRPTHRPTNLCEW 101 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~----vidID-----------~~~d~~~i~~~L~~~tg~~s~ 101 (107)
|.+|+..+|+.|--|-++|.++.-... .+.+| ..++..+.|++..+..|.+++
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~v 69 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSV 69 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S--
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCC
Confidence 689999999999999999987763211 22222 223345677777776665554
No 243
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=79.09 E-value=6.3 Score=30.17 Aligned_cols=45 Identities=11% Similarity=0.012 Sum_probs=32.7
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhh
Q 033975 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSG 89 (107)
Q Consensus 45 ~~~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~ 89 (107)
...++.+|.+..||-|...-..+..-+-+++++-++..-|...|+
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir 152 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIR 152 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHH
Confidence 456899999999999998666666567677777777544444443
No 244
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=78.81 E-value=1.3 Score=37.98 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=22.4
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCC
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQP 74 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~ 74 (107)
-.+-|..|||+||++.+-++++++-.|
T Consensus 387 VLvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 387 VLVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred eEEEEcCcccchhhhhhhHHHHHHHHh
Confidence 366899999999999998888877544
No 245
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=78.25 E-value=2.4 Score=29.86 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=22.5
Q ss_pred CEEEEecCCChhHHHHHHHHH----hc-CCCCEEEEcc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFA----DL-NEQPFVVELD 80 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~----~l-gv~~~vidID 80 (107)
.|++|.-..||||..+...|. .+ ++..+..-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 478999999999997665554 44 5554444333
No 246
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=77.89 E-value=2.6 Score=31.43 Aligned_cols=43 Identities=7% Similarity=-0.045 Sum_probs=30.2
Q ss_pred HHhhhcCCCEEEEecCCChhHHHHHHHHH---hcCCCC------EEEEccCC
Q 033975 40 VQNSIFSNKIVIFSKSYCPYCLRAKRIFA---DLNEQP------FVVELDLR 82 (107)
Q Consensus 40 v~~~i~~~~Vvvfsks~CPyC~~aK~lL~---~lgv~~------~vidID~~ 82 (107)
.+++.....++.|..+|||-|+.-.-+|+ +.|++. ..|++|..
T Consensus 54 ~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 54 SAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred HHHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 34444445789999999999997665554 456776 67777654
No 247
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=77.86 E-value=2.8 Score=28.39 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=13.9
Q ss_pred CCEEEEecCC-ChhHHHHHHHHH
Q 033975 47 NKIVIFSKSY-CPYCLRAKRIFA 68 (107)
Q Consensus 47 ~~Vvvfsks~-CPyC~~aK~lL~ 68 (107)
.-|+.|..+| ||+|.+--..|.
T Consensus 28 ~vvl~f~~~~~c~~C~~e~~~l~ 50 (143)
T cd03014 28 VKVISVFPSIDTPVCATQTKRFN 50 (143)
T ss_pred eEEEEEEcCCCCCcCHHHHHHHH
Confidence 3455556666 799996554443
No 248
>PRK13189 peroxiredoxin; Provisional
Probab=77.63 E-value=2.4 Score=32.07 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=21.3
Q ss_pred cCCCEEE--EecCCChhHHHHH-------HHHHhcCCCCEEEEccCC
Q 033975 45 FSNKIVI--FSKSYCPYCLRAK-------RIFADLNEQPFVVELDLR 82 (107)
Q Consensus 45 ~~~~Vvv--fsks~CPyC~~aK-------~lL~~lgv~~~vidID~~ 82 (107)
+...+++ |..++||.|..-- +-|.+.|+....|.+|..
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~ 80 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQV 80 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 3433554 6789999999532 233445555444544433
No 249
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=76.90 E-value=2.6 Score=29.03 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=22.9
Q ss_pred cCCCEEE-Ee-cCCChhHHHHHHH-------HHhcCCCCEEEEccCCCCchHhhhcccCC
Q 033975 45 FSNKIVI-FS-KSYCPYCLRAKRI-------FADLNEQPFVVELDLRVYSFGSGRPTHRP 95 (107)
Q Consensus 45 ~~~~Vvv-fs-ks~CPyC~~aK~l-------L~~lgv~~~vidID~~~d~~~i~~~L~~~ 95 (107)
+.+.++| |. ..+||+|..-... +.+.|+ .+|-|+.+ +.+++++.+.+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v--~vi~Is~d-~~~~~~~~~~~~ 85 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGV--VVLGISTD-KPEKLSRFAEKE 85 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCC-CHHHHHHHHHHh
Confidence 4444443 33 3479999753322 233333 44444433 335555544443
No 250
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=75.57 E-value=4 Score=34.55 Aligned_cols=38 Identities=5% Similarity=0.078 Sum_probs=26.7
Q ss_pred hhHHHHHHhhhc----CCCEEEEecCCChhHHHHHHHHHhcC
Q 033975 34 HSVSAFVQNSIF----SNKIVIFSKSYCPYCLRAKRIFADLN 71 (107)
Q Consensus 34 ~~~k~~v~~~i~----~~~Vvvfsks~CPyC~~aK~lL~~lg 71 (107)
++.++++++... .-.+.+|..+.|++|..++++|+++.
T Consensus 351 ~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~ 392 (555)
T TIGR03143 351 DSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFA 392 (555)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHH
Confidence 344445555543 22466798899999999999998754
No 251
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=75.17 E-value=2.9 Score=28.15 Aligned_cols=38 Identities=21% Similarity=0.554 Sum_probs=23.3
Q ss_pred CEEEEecCCChhHHH--HHHHHHhc--CCCCEEEEccCCCCc
Q 033975 48 KIVIFSKSYCPYCLR--AKRIFADL--NEQPFVVELDLRVYS 85 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~--aK~lL~~l--gv~~~vidID~~~d~ 85 (107)
+|.||..+-||+|++ +..++..+ .--...+||+..+-|
T Consensus 2 ~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G 43 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFG 43 (108)
T ss_pred EEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEe
Confidence 588999999999997 34444322 222345555544433
No 252
>PRK13191 putative peroxiredoxin; Provisional
Probab=75.16 E-value=3.2 Score=31.26 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=23.8
Q ss_pred EEecCCChhHHHHHH-------HHHhcCCCCEEEEccCCCCchHhhhccc
Q 033975 51 IFSKSYCPYCLRAKR-------IFADLNEQPFVVELDLRVYSFGSGRPTH 93 (107)
Q Consensus 51 vfsks~CPyC~~aK~-------lL~~lgv~~~vidID~~~d~~~i~~~L~ 93 (107)
.|-.+|||.|..--. -|.+.|+..--+.+|......++.+.++
T Consensus 40 f~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~ 89 (215)
T PRK13191 40 SHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIE 89 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHH
Confidence 568899999996333 3344555555555554433234444333
No 253
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.17 E-value=6.3 Score=31.72 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=19.5
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHh
Q 033975 45 FSNKIVIFSKSYCPYCLRAKRIFAD 69 (107)
Q Consensus 45 ~~~~Vvvfsks~CPyC~~aK~lL~~ 69 (107)
...-++.|..+||++|.+....+.+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~ 71 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKK 71 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHH
Confidence 4557899999999999976655553
No 254
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=74.13 E-value=11 Score=32.99 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=46.0
Q ss_pred HHHhhhcCCC----EEEEecCCChhHHHHHHHHH-hcC-----CCCEEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 39 FVQNSIFSNK----IVIFSKSYCPYCLRAKRIFA-DLN-----EQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 39 ~v~~~i~~~~----Vvvfsks~CPyC~~aK~lL~-~lg-----v~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
.+++...+++ .+=|+.+||--|+.-++..- +-. .++.....|-..+..++.+.|+++ |.-++|+.
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~-~~~G~P~~ 538 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL-GVFGVPTY 538 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc-CCCCCCEE
Confidence 6777776665 34699999999998776653 111 245677778788888888888875 45557764
No 255
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=73.01 E-value=15 Score=23.01 Aligned_cols=30 Identities=7% Similarity=-0.119 Sum_probs=23.6
Q ss_pred cCCChhHHHHHHHHHhcCCCCEEEEccCCC
Q 033975 54 KSYCPYCLRAKRIFADLNEQPFVVELDLRV 83 (107)
Q Consensus 54 ks~CPyC~~aK~lL~~lgv~~~vidID~~~ 83 (107)
-..=+-|.++.-+|...|++|+.+.+|..+
T Consensus 6 ~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~ 35 (82)
T cd03075 6 WDIRGLAQPIRLLLEYTGEKYEEKRYELGD 35 (82)
T ss_pred eCCccccHHHHHHHHHcCCCcEEEEeccCC
Confidence 333367889999999999999988887554
No 256
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.81 E-value=6.8 Score=31.37 Aligned_cols=61 Identities=26% Similarity=0.347 Sum_probs=39.4
Q ss_pred HHHHHHhhhcCC---CEEEEecCCChhHHHHHHHHHhcCCCC-----EEEEccCCCCchHhhhcccCCCCCCCccc
Q 033975 36 VSAFVQNSIFSN---KIVIFSKSYCPYCLRAKRIFADLNEQP-----FVVELDLRVYSFGSGRPTHRPTNLCEWRT 103 (107)
Q Consensus 36 ~k~~v~~~i~~~---~Vvvfsks~CPyC~~aK~lL~~lgv~~-----~vidID~~~d~~~i~~~L~~~tg~~s~P~ 103 (107)
...+..++-... -++=|+.+||+-|+++--+|+++--.| -.||+|+-. ......|.+.-||
T Consensus 9 d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~-------~taa~~gV~amPT 77 (288)
T KOG0908|consen 9 DSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECR-------GTAATNGVNAMPT 77 (288)
T ss_pred cHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhh-------chhhhcCcccCce
Confidence 344555555443 466799999999999999998877655 356665432 2334455555555
No 257
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=70.70 E-value=6.8 Score=30.73 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=24.3
Q ss_pred HhhhcCCCEEEE--ecCCChhHHH-------HHHHHHhcCCCCEEEEccC
Q 033975 41 QNSIFSNKIVIF--SKSYCPYCLR-------AKRIFADLNEQPFVVELDL 81 (107)
Q Consensus 41 ~~~i~~~~Vvvf--sks~CPyC~~-------aK~lL~~lgv~~~vidID~ 81 (107)
++..+...+++| ...|||.|.. ..+-|.+.|+...-|-+|.
T Consensus 93 sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 93 SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 444455566665 5789999996 3334445565555555544
No 258
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=70.53 E-value=2 Score=35.53 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=34.0
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEE----EccCCCCchHhhhcccCCCCCCCcccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVV----ELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vi----dID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
=.+=|..|||.+|++..-++++.|....-+ .+.+.+ .-.-.++..--|.+.+||.
T Consensus 46 W~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlD--aT~f~aiAnefgiqGYPTI 104 (468)
T KOG4277|consen 46 WFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLD--ATRFPAIANEFGIQGYPTI 104 (468)
T ss_pred EEEEeechhhhhcccccchhHHhCcchhhcCCceeecccc--cccchhhHhhhccCCCceE
Confidence 477899999999999999999887543321 111111 1122334445566667763
No 259
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=68.14 E-value=7.9 Score=28.56 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=8.2
Q ss_pred cCCChhHHH
Q 033975 54 KSYCPYCLR 62 (107)
Q Consensus 54 ks~CPyC~~ 62 (107)
..|||.|..
T Consensus 41 ~~~~p~C~~ 49 (187)
T PRK10382 41 ADFTFVCPT 49 (187)
T ss_pred CCCCCcCHH
Confidence 899999996
No 260
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=67.75 E-value=10 Score=24.91 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=22.9
Q ss_pred EEecCCChhHHHHHHHHHhcCC--CCEEEEc
Q 033975 51 IFSKSYCPYCLRAKRIFADLNE--QPFVVEL 79 (107)
Q Consensus 51 vfsks~CPyC~~aK~lL~~lgv--~~~vidI 79 (107)
||.=..||+|....+.+.++.. ....+++
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~ 31 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDI 31 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEEC
Confidence 3455789999999999998874 4677777
No 261
>PTZ00057 glutathione s-transferase; Provisional
Probab=67.69 E-value=23 Score=25.63 Aligned_cols=55 Identities=13% Similarity=-0.074 Sum_probs=38.4
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCch--Hhhhccc-CCCCCCCccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSF--GSGRPTH-RPTNLCEWRT 103 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~--~i~~~L~-~~tg~~s~P~ 103 (107)
.+++|.-+.-+.+.+++-+|..+|++|+.+.++...+ . +..+... ..++...+|+
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~-~~~~~~~~~~~~~nP~g~vP~ 61 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGD-AFIEFKNFKKEKDTPFEQVPI 61 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccch-HHHHHHhccccCCCCCCCCCE
Confidence 4788988888999999999999999999887643221 1 1122111 4677777775
No 262
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=66.03 E-value=5.2 Score=32.04 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHhcCCCCEEEE----------------ccCC--CCchHhhhcccCCCCCCC
Q 033975 57 CPYCLRAKRIFADLNEQPFVVE----------------LDLR--VYSFGSGRPTHRPTNLCE 100 (107)
Q Consensus 57 CPyC~~aK~lL~~lgv~~~vid----------------ID~~--~d~~~i~~~L~~~tg~~s 100 (107)
-|||.+++.+|...+++|++++ ++.. .|.+-|...|.++.+..+
T Consensus 61 SPfClKvEt~lR~~~IpYE~~~~~~~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~ 122 (281)
T KOG4244|consen 61 SPFCLKVETFLRAYDIPYEIVDCSLKRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPD 122 (281)
T ss_pred ChHHHHHHHHHHHhCCCceeccccceeeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCC
Confidence 5899999999999999987654 3322 344556666666666444
No 263
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=65.53 E-value=7.7 Score=28.39 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=15.8
Q ss_pred cCCChhHHHHHHHH-------HhcCCCCEEEEccCC
Q 033975 54 KSYCPYCLRAKRIF-------ADLNEQPFVVELDLR 82 (107)
Q Consensus 54 ks~CPyC~~aK~lL-------~~lgv~~~vidID~~ 82 (107)
..+||.|.....-| .+.|+....|..|..
T Consensus 46 ~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 46 LDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 46788888533333 344555555555543
No 264
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=63.45 E-value=12 Score=28.53 Aligned_cols=53 Identities=6% Similarity=0.088 Sum_probs=41.8
Q ss_pred chhHHHHHHhhhcCCCEEEEecC-----CChhHHHHHHHHHhc------CCCCEEEEccCCCCc
Q 033975 33 DHSVSAFVQNSIFSNKIVIFSKS-----YCPYCLRAKRIFADL------NEQPFVVELDLRVYS 85 (107)
Q Consensus 33 ~~~~k~~v~~~i~~~~Vvvfsks-----~CPyC~~aK~lL~~l------gv~~~vidID~~~d~ 85 (107)
++.++..++.+-+.-.|.+|..+ .=++=..++++|+++ ++.+++||.+..++.
T Consensus 13 S~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~ 76 (271)
T PF09822_consen 13 SDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSE 76 (271)
T ss_pred CHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHH
Confidence 56778888887777789999888 678888999999987 577888887655543
No 265
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=62.25 E-value=5.7 Score=28.03 Aligned_cols=21 Identities=14% Similarity=0.566 Sum_probs=17.3
Q ss_pred CEEEEecCCChhHHHHHHHHH
Q 033975 48 KIVIFSKSYCPYCLRAKRIFA 68 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~ 68 (107)
+|.+|+-+.||||..+.+.|.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 478999999999997666665
No 266
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.00 E-value=4.2 Score=31.56 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=29.9
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCC---EEEEc---------cCCCCchHhhhcccCCCC
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQP---FVVEL---------DLRVYSFGSGRPTHRPTN 97 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~---~vidI---------D~~~d~~~i~~~L~~~tg 97 (107)
+|.+||-.-||||-.-++-|++.-..+ ..++| +..++|.+.++.|.+.-|
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g 68 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYG 68 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcccccHHHHHHHHhC
Confidence 688999999999996666665443322 12222 233445556666655444
No 267
>PRK15000 peroxidase; Provisional
Probab=60.59 E-value=9.3 Score=28.30 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=12.6
Q ss_pred cCCCEEEEecC--CChhHHHHH
Q 033975 45 FSNKIVIFSKS--YCPYCLRAK 64 (107)
Q Consensus 45 ~~~~Vvvfsks--~CPyC~~aK 64 (107)
+.+.+++|.-+ +||.|..--
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El 54 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSEL 54 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHH
Confidence 44455555544 799999633
No 268
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=59.36 E-value=9.1 Score=26.87 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=16.5
Q ss_pred EEEEecCCChhHHHHHHHHHh
Q 033975 49 IVIFSKSYCPYCLRAKRIFAD 69 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~ 69 (107)
|.+|+-.-||||.-+++.|.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~ 21 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPA 21 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHH
Confidence 458899999999977666654
No 269
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=58.24 E-value=6.8 Score=28.86 Aligned_cols=21 Identities=24% Similarity=0.708 Sum_probs=17.2
Q ss_pred CCCEEEEecCCChhHHHHHHH
Q 033975 46 SNKIVIFSKSYCPYCLRAKRI 66 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~l 66 (107)
...|+-|.--+||||.+....
T Consensus 38 ~~~VvEffdy~CphC~~~~~~ 58 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEV 58 (207)
T ss_pred CCeEEEEeCCCCccHHHhccc
Confidence 456999999999999986543
No 270
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=58.12 E-value=14 Score=27.41 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=17.2
Q ss_pred CCCEEEEecCCChhHHHHHHHHHh
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFAD 69 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~ 69 (107)
...+++|.-..||||.+.-.-+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 446889999999999655444443
No 271
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=57.74 E-value=19 Score=26.40 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=30.0
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCCCEEEEcc
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD 80 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID 80 (107)
...+++|-.|+|+=|..=-+.|+..|+...+++.|
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~ 59 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETD 59 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecC
Confidence 45789999999999999999999998877777654
No 272
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.43 E-value=22 Score=31.79 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=38.8
Q ss_pred HHHHhhhcCCCEEE-EecCCChhHHH-HHHHHHhcC------CCCEEEEcc--CCCCchH-hhhcccCCCCCCCccc
Q 033975 38 AFVQNSIFSNKIVI-FSKSYCPYCLR-AKRIFADLN------EQPFVVELD--LRVYSFG-SGRPTHRPTNLCEWRT 103 (107)
Q Consensus 38 ~~v~~~i~~~~Vvv-fsks~CPyC~~-aK~lL~~lg------v~~~vidID--~~~d~~~-i~~~L~~~tg~~s~P~ 103 (107)
++-.....+.+|.+ ..-++|.||+. +++-|++-. -.|.-|.+| ++||=++ .+++.+-+||+..||-
T Consensus 35 Af~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL 111 (667)
T COG1331 35 AFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPL 111 (667)
T ss_pred HHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence 34444445555553 56678999994 444443322 234445554 4455544 4556667999999993
No 273
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=56.35 E-value=22 Score=23.59 Aligned_cols=36 Identities=3% Similarity=0.036 Sum_probs=24.1
Q ss_pred hHHHHHHhhh----cCCCEEEEecCCChhHHHHHHHHHhcC
Q 033975 35 SVSAFVQNSI----FSNKIVIFSKSYCPYCLRAKRIFADLN 71 (107)
Q Consensus 35 ~~k~~v~~~i----~~~~Vvvfsks~CPyC~~aK~lL~~lg 71 (107)
+.+++++++. ..-.+.+|.-+. ++|..++++|++..
T Consensus 5 ~~~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a 44 (94)
T cd02974 5 NLKQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIA 44 (94)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHH
Confidence 3444444444 333456787777 99999999998654
No 274
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=56.04 E-value=43 Score=23.40 Aligned_cols=50 Identities=12% Similarity=-0.123 Sum_probs=38.7
Q ss_pred cchhHHHHHHhhh-cCCCEEEEecCCChhHH------------HHHHHHHhcCCCCEEEEccC
Q 033975 32 ADHSVSAFVQNSI-FSNKIVIFSKSYCPYCL------------RAKRIFADLNEQPFVVELDL 81 (107)
Q Consensus 32 ~~~~~k~~v~~~i-~~~~Vvvfsks~CPyC~------------~aK~lL~~lgv~~~vidID~ 81 (107)
...++.+.++.+- ....|++.|........ .+++.|++++++|..+.+-.
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 4556677777664 45678888888887777 89999999999998777654
No 275
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.03 E-value=5.4 Score=32.25 Aligned_cols=19 Identities=42% Similarity=0.992 Sum_probs=12.8
Q ss_pred EEEecCCChhHHH---HHHHHH
Q 033975 50 VIFSKSYCPYCLR---AKRIFA 68 (107)
Q Consensus 50 vvfsks~CPyC~~---aK~lL~ 68 (107)
+|=-|++||||++ .+++++
T Consensus 266 ivGKkqtCPYCKekVdl~rmfs 287 (328)
T KOG1734|consen 266 IVGKKQTCPYCKEKVDLKRMFS 287 (328)
T ss_pred eecCCCCCchHHHHhhHhhhcc
Confidence 4556788999995 444444
No 276
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=55.91 E-value=14 Score=30.55 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=22.8
Q ss_pred HHhhhcCCC--EEEEecCCChhHHHHHHHHHh
Q 033975 40 VQNSIFSNK--IVIFSKSYCPYCLRAKRIFAD 69 (107)
Q Consensus 40 v~~~i~~~~--Vvvfsks~CPyC~~aK~lL~~ 69 (107)
++.++..+. .+-|..+||||++..+-+|.+
T Consensus 6 ~~~il~s~elvfv~FyAdWCrFSq~L~piF~E 37 (375)
T KOG0912|consen 6 IDSILDSNELVFVNFYADWCRFSQMLKPIFEE 37 (375)
T ss_pred HHHhhccceEEeeeeehhhchHHHHHhHHHHH
Confidence 445565554 447999999999999888864
No 277
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=55.88 E-value=20 Score=25.70 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=26.2
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHhcCCC
Q 033975 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQ 73 (107)
Q Consensus 45 ~~~~Vvvfsks~CPyC~~aK~lL~~lgv~ 73 (107)
++.+|++|..++|+.+..+-..|.++|..
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 56799999999999999999999999965
No 278
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=55.68 E-value=15 Score=26.89 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=23.1
Q ss_pred CCEEEEecCCChhHHHHHHHHH----hcCCC--CEEEEcc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFA----DLNEQ--PFVVELD 80 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~----~lgv~--~~vidID 80 (107)
++|.+|+-.-||||--+++-|. ..++. +.-++|+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L~ 40 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFLG 40 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 3678999999999997766654 44443 3445553
No 279
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=55.64 E-value=16 Score=22.66 Aligned_cols=24 Identities=25% Similarity=0.157 Sum_probs=20.5
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEE
Q 033975 55 SYCPYCLRAKRIFADLNEQPFVVE 78 (107)
Q Consensus 55 s~CPyC~~aK~lL~~lgv~~~vid 78 (107)
+..|+|.++..+|+-.|++|+++.
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~ 37 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVP 37 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEe
Confidence 347999999999999999997664
No 280
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=55.26 E-value=23 Score=24.56 Aligned_cols=32 Identities=9% Similarity=-0.093 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCCEEEEccCCCCchHhhhcc
Q 033975 61 LRAKRIFADLNEQPFVVELDLRVYSFGSGRPT 92 (107)
Q Consensus 61 ~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L 92 (107)
.++.++|+++|++|..++.+.....++..+.+
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~ 33 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIR 33 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHHHHHHh
Confidence 36788999999999999876655555444443
No 281
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=54.64 E-value=11 Score=27.86 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=19.6
Q ss_pred CEEEEecCCChhHHHHHHHHHhcC
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLN 71 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lg 71 (107)
++.+|+.+.||||+++-+.+....
T Consensus 121 ~~~~f~~~~~~~~~~a~~~~~~~~ 144 (244)
T COG1651 121 REFPFLDPACPYCRRAAQAARCAA 144 (244)
T ss_pred EEeecCCCCcHHHHHHHHHHHHhc
Confidence 456899999999999888887544
No 282
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=54.30 E-value=17 Score=25.82 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=20.6
Q ss_pred CCEEEEecCC-ChhHHHHHHHHH----hcCCCCEEEEccCC
Q 033975 47 NKIVIFSKSY-CPYCLRAKRIFA----DLNEQPFVVELDLR 82 (107)
Q Consensus 47 ~~Vvvfsks~-CPyC~~aK~lL~----~lgv~~~vidID~~ 82 (107)
.-|+.|..+| ||.|.+--..|. +++ ...++=|+.+
T Consensus 46 ~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D 85 (167)
T PRK00522 46 RKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISAD 85 (167)
T ss_pred EEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCC
Confidence 3466777777 999997444443 322 4555555433
No 283
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=52.17 E-value=29 Score=21.59 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHHHHHHHHHhcC-CCCcccchhHH
Q 033975 4 RGWQSRFLVEAVGLLFFLLLGNA-PTATEADHSVS 37 (107)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k 37 (107)
|+||+..++..-+.+..+++-+. -.|-+-.|+.+
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Ypi~~~Pmm~~eeYk 37 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALYPIYFRPMMNPEEYK 37 (58)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhcccccChHHHH
Confidence 89999999987777565555555 34444455554
No 284
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=51.83 E-value=24 Score=22.44 Aligned_cols=25 Identities=16% Similarity=-0.015 Sum_probs=21.7
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEc
Q 033975 55 SYCPYCLRAKRIFADLNEQPFVVEL 79 (107)
Q Consensus 55 s~CPyC~~aK~lL~~lgv~~~vidI 79 (107)
+..+.|.++.-+|..+|++|+.++.
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~ 39 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCR 39 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEec
Confidence 4577889999999999999998854
No 285
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=50.56 E-value=18 Score=26.23 Aligned_cols=42 Identities=10% Similarity=-0.141 Sum_probs=30.9
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCC
Q 033975 55 SYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPT 96 (107)
Q Consensus 55 s~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~t 96 (107)
+-=|++.++.+.|+++|++|++.-+.-+...+++.+.+..+.
T Consensus 11 SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~ 52 (150)
T PF00731_consen 11 SDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYE 52 (150)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhc
Confidence 336899999999999999998877777777777766665554
No 286
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=50.22 E-value=45 Score=27.03 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=40.7
Q ss_pred hhHHHHHHhhhcCC---CEEEEecCCChhHH----HHHHHHHhcCCCCEEEEccCCCCchHhh
Q 033975 34 HSVSAFVQNSIFSN---KIVIFSKSYCPYCL----RAKRIFADLNEQPFVVELDLRVYSFGSG 89 (107)
Q Consensus 34 ~~~k~~v~~~i~~~---~Vvvfsks~CPyC~----~aK~lL~~lgv~~~vidID~~~d~~~i~ 89 (107)
..-.+.+.+++++. -|+.++..+|-.-. .+++.|++.|+++-.+|.|..++..+++
T Consensus 299 ~~R~~~i~~lv~~~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~~~~gQi~ 361 (377)
T TIGR03190 299 HTRYDHVLGLAKEYNVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDITNPIGPFR 361 (377)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCCCchHHHH
Confidence 33455566666543 58888888897665 5789999999999999999775544433
No 287
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=49.91 E-value=10 Score=26.93 Aligned_cols=20 Identities=40% Similarity=0.826 Sum_probs=15.3
Q ss_pred EEEEecCCChhHHHHHHHHH
Q 033975 49 IVIFSKSYCPYCLRAKRIFA 68 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~ 68 (107)
|.+|+-.-||||.-+..-|.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~ 20 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLE 20 (201)
T ss_pred CeEEecCcCccHHHHHHHHH
Confidence 46889999999996665554
No 288
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=48.59 E-value=14 Score=27.19 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=13.6
Q ss_pred CCCEEEEecCCChhHHH
Q 033975 46 SNKIVIFSKSYCPYCLR 62 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~ 62 (107)
..-+++|..+||++|..
T Consensus 26 KvvLVvf~AS~C~~~~q 42 (183)
T PRK10606 26 NVLLIVNVASKCGLTPQ 42 (183)
T ss_pred CEEEEEEEeCCCCCcHH
Confidence 34567999999999974
No 289
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.23 E-value=74 Score=27.22 Aligned_cols=81 Identities=12% Similarity=0.034 Sum_probs=47.3
Q ss_pred HHHhcC-CCCcccchhHHHHHHhhhcCCCEEEEecCCChhHHHHHHHHH---hcCCCCEEEEccCCCCchHhhhcccCCC
Q 033975 21 LLLGNA-PTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFA---DLNEQPFVVELDLRVYSFGSGRPTHRPT 96 (107)
Q Consensus 21 ~~~~~~-~~~~~~~~~~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~---~lgv~~~vidID~~~d~~~i~~~L~~~t 96 (107)
|++|-. --|+....+..+.|+.+=.+-...-|..-+|..|..+-+.|+ -++.+..-.-| ||+-+|+.... -
T Consensus 91 LaLlqv~G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~I----dGa~Fq~Evea-r 165 (520)
T COG3634 91 LALLQVGGHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAI----DGALFQDEVEA-R 165 (520)
T ss_pred HHHHHhcCCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEe----cchhhHhHHHh-c
Confidence 445554 333444556777777777777888888888888877666665 45544433333 34444444331 2
Q ss_pred CCCCcccccc
Q 033975 97 NLCEWRTHWW 106 (107)
Q Consensus 97 g~~s~P~~~~ 106 (107)
+.-++||||-
T Consensus 166 ~IMaVPtvfl 175 (520)
T COG3634 166 NIMAVPTVFL 175 (520)
T ss_pred cceecceEEE
Confidence 3345888773
No 290
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=48.20 E-value=62 Score=23.65 Aligned_cols=66 Identities=9% Similarity=0.016 Sum_probs=42.0
Q ss_pred cccchhHHHHHHhhh-cCCCEEEEecCC---ChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCC
Q 033975 30 TEADHSVSAFVQNSI-FSNKIVIFSKSY---CPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRP 95 (107)
Q Consensus 30 ~~~~~~~k~~v~~~i-~~~~Vvvfsks~---CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~ 95 (107)
....+....+++... ...+|.+..... ..++....+.|.++|.....+.+-.+.+..++.+.|...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~a 81 (210)
T cd03129 12 AHARPILQDFLARAGGAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEA 81 (210)
T ss_pred cChHHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhC
Confidence 334445566666665 455666664444 688999999999999886654442224445666666554
No 291
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=48.01 E-value=5.6 Score=34.93 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=36.4
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCC----CEEEEccCCCCchHhhhcccCCCCCCCcccccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~----~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~ 106 (107)
.++-|..+||++|++-.=.++++... ..++-|-..+=+++.-..|=+-.|.+.+||..|
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlry 122 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRY 122 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeee
Confidence 57789999999999765555544321 233333333333444455666677777888754
No 292
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=47.31 E-value=19 Score=25.19 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHhcC---CCCEEEEccCCCCchHhhhcccC
Q 033975 56 YCPYCLRAKRIFADLN---EQPFVVELDLRVYSFGSGRPTHR 94 (107)
Q Consensus 56 ~CPyC~~aK~lL~~lg---v~~~vidID~~~d~~~i~~~L~~ 94 (107)
+||+|..++.+|...- -..++.-||.-.-.+++.+.++.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE 64 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGE 64 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhCh
Confidence 4999999999998544 23444444544444566666655
No 293
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=45.67 E-value=19 Score=28.35 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=20.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcC
Q 033975 2 KKRGWQSRFLVEAVGLLFFLLLGNA 26 (107)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (107)
|=||||++.|.--.++++.|.+.|=
T Consensus 5 Gi~Gwrk~cly~~vllL~il~iiNL 29 (264)
T PF04790_consen 5 GIYGWRKRCLYLFVLLLFILAIINL 29 (264)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5699999999998888776666653
No 294
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=45.11 E-value=31 Score=21.38 Aligned_cols=16 Identities=13% Similarity=0.642 Sum_probs=13.7
Q ss_pred CChhHH-HHHHHHHhcC
Q 033975 56 YCPYCL-RAKRIFADLN 71 (107)
Q Consensus 56 ~CPyC~-~aK~lL~~lg 71 (107)
+|++|. ++++.|.+..
T Consensus 12 tC~~C~~~V~~al~~v~ 28 (71)
T COG2608 12 TCGHCVKTVEKALEEVD 28 (71)
T ss_pred CcHHHHHHHHHHHhcCC
Confidence 599999 4889999877
No 295
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=44.73 E-value=41 Score=23.49 Aligned_cols=31 Identities=10% Similarity=-0.112 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCCEEEEccCCCCchHhhhcc
Q 033975 62 RAKRIFADLNEQPFVVELDLRVYSFGSGRPT 92 (107)
Q Consensus 62 ~aK~lL~~lgv~~~vidID~~~d~~~i~~~L 92 (107)
++.++|+++|++|..++.+.....++..+.+
T Consensus 3 ~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~ 33 (156)
T cd04335 3 ELLALLDELGIAYETVEHPPVFTVEEADEVL 33 (156)
T ss_pred HHHHHHHHCCCceEEEecCCcCCHHHHHHhh
Confidence 5778899999999888876544444444443
No 296
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=44.49 E-value=37 Score=23.58 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCCCEEEEccCCCCc---hHhhhccc
Q 033975 62 RAKRIFADLNEQPFVVELDLRVYS---FGSGRPTH 93 (107)
Q Consensus 62 ~aK~lL~~lgv~~~vidID~~~d~---~~i~~~L~ 93 (107)
.+.++|++++++|++++-+...+. ++..+.++
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~~~~t~~e~a~~~g 36 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDPDHLDGESAAEKLG 36 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCcccHHHHHHHhC
Confidence 478999999999999988755432 44554443
No 297
>COG1631 RPL42A Ribosomal protein L44E [Translation, ribosomal structure and biogenesis]
Probab=44.35 E-value=5.9 Score=26.93 Aligned_cols=9 Identities=56% Similarity=1.885 Sum_probs=7.4
Q ss_pred cCCChhHHH
Q 033975 54 KSYCPYCLR 62 (107)
Q Consensus 54 ks~CPyC~~ 62 (107)
++|||||.+
T Consensus 8 ~tyCp~Ckk 16 (94)
T COG1631 8 RTYCPYCKK 16 (94)
T ss_pred eecCccccc
Confidence 579999974
No 298
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.84 E-value=13 Score=25.61 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=26.6
Q ss_pred cCCCEEEEecCC-ChhHH------HHHHHHHh---cC-----CCCEEEEccCCCCchHh
Q 033975 45 FSNKIVIFSKSY-CPYCL------RAKRIFAD---LN-----EQPFVVELDLRVYSFGS 88 (107)
Q Consensus 45 ~~~~Vvvfsks~-CPyC~------~aK~lL~~---lg-----v~~~vidID~~~d~~~i 88 (107)
...+++||+... |-.|. .+.+.|.. .+ ..++.|||...++.+.-
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~ 61 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHD 61 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHH
Confidence 345678888877 77776 34455542 11 33578999655554433
No 299
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=40.98 E-value=93 Score=20.62 Aligned_cols=46 Identities=7% Similarity=-0.086 Sum_probs=37.0
Q ss_pred CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhccc
Q 033975 48 KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTH 93 (107)
Q Consensus 48 ~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~ 93 (107)
+|++++.++|+=..-++.+...++.++..+.+..+-+..++.-...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~ 46 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYD 46 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeee
Confidence 4789999999999999999999988888888887777666554443
No 300
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.82 E-value=31 Score=22.28 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=16.9
Q ss_pred ChhHHHHHHHHHhcCCCCE
Q 033975 57 CPYCLRAKRIFADLNEQPF 75 (107)
Q Consensus 57 CPyC~~aK~lL~~lgv~~~ 75 (107)
=+|++++.++|.++|++++
T Consensus 15 vGF~rk~L~I~E~~~is~E 33 (76)
T cd04911 15 VGFGRKLLSILEDNGISYE 33 (76)
T ss_pred hcHHHHHHHHHHHcCCCEe
Confidence 4799999999999999874
No 301
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=40.35 E-value=35 Score=19.78 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=23.3
Q ss_pred CChhHH-HHHHHHHhc-CCCCEEEEc-------cCCCCc---hHhhhcccC
Q 033975 56 YCPYCL-RAKRIFADL-NEQPFVVEL-------DLRVYS---FGSGRPTHR 94 (107)
Q Consensus 56 ~CPyC~-~aK~lL~~l-gv~~~vidI-------D~~~d~---~~i~~~L~~ 94 (107)
.|+.|. ++++.|.++ |+.-..+|+ ..+++. +++.+.+.+
T Consensus 8 ~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 8 TCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp TSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 699998 478888876 453322332 223333 677776654
No 302
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=40.19 E-value=29 Score=28.13 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=31.1
Q ss_pred CChhHH---------------HHHHHHHhcCCCCEEE---EccCCCCc-----hHhhhcccCCCCCCC
Q 033975 56 YCPYCL---------------RAKRIFADLNEQPFVV---ELDLRVYS-----FGSGRPTHRPTNLCE 100 (107)
Q Consensus 56 ~CPyC~---------------~aK~lL~~lgv~~~vi---dID~~~d~-----~~i~~~L~~~tg~~s 100 (107)
.|+||. ++-+...++|+.|.+| |=|.-+|| ++..+++++.+++..
T Consensus 83 ~C~FC~V~~g~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~ 150 (306)
T COG0320 83 RCRFCDVKTGRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTT 150 (306)
T ss_pred CCCccccCCCCCCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCce
Confidence 499997 6777888999998654 44444555 356677777776654
No 303
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=40.12 E-value=42 Score=27.34 Aligned_cols=59 Identities=10% Similarity=-0.096 Sum_probs=44.7
Q ss_pred CCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCC-------CCchHhhhcccCCCCCCCccccc
Q 033975 47 NKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLR-------VYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 47 ~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~-------~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
..-.+|-..-..||...+++.+.+++..-++.+... -+..+..++...+....-+|+||
T Consensus 218 ~~~tvy~sGDT~~~~~~~~i~~~~~iDvall~iG~~p~~~~~hm~p~ea~~~a~~l~ak~vIpiH~ 283 (355)
T PRK11709 218 PGGNIYHSGDSHYSNYFAKHGNDHQIDVALGSYGENPRGITDKMTSIDILRMAESLNAKVVIPVHH 283 (355)
T ss_pred CCeEEEEeCCCCccHHHHHHHhcCCCCEEEecCCCCCCCCcCCCCHHHHHHHHHHcCCCEEEEECh
Confidence 334466666678899999999888887777666532 23467888888899999999998
No 304
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=39.84 E-value=42 Score=28.07 Aligned_cols=37 Identities=5% Similarity=0.067 Sum_probs=24.6
Q ss_pred hhHHHHHHhhhc----CCCEEEEecCCChhHHHHHHHHHhcC
Q 033975 34 HSVSAFVQNSIF----SNKIVIFSKSYCPYCLRAKRIFADLN 71 (107)
Q Consensus 34 ~~~k~~v~~~i~----~~~Vvvfsks~CPyC~~aK~lL~~lg 71 (107)
++.++.++++.. .-.+.+|.- .|++|..++++|+++.
T Consensus 4 ~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (517)
T PRK15317 4 ANLKTQLKQYLELLERPIELVASLD-DSEKSAELKELLEEIA 44 (517)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHHH
Confidence 344555555443 334556665 7999999999998765
No 305
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=39.57 E-value=73 Score=23.72 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=39.4
Q ss_pred chhHHHHHHhhh-cCCCEEEEecCC---ChhHHHHHHHHHhcCCC-CEEEEccCCC--CchHhhhcccCC
Q 033975 33 DHSVSAFVQNSI-FSNKIVIFSKSY---CPYCLRAKRIFADLNEQ-PFVVELDLRV--YSFGSGRPTHRP 95 (107)
Q Consensus 33 ~~~~k~~v~~~i-~~~~Vvvfsks~---CPyC~~aK~lL~~lgv~-~~vidID~~~--d~~~i~~~L~~~ 95 (107)
.+-.+.+++..- ...+|.+....+ +-++.+..+.|.++|.. ...++++..+ +..++.+.|...
T Consensus 15 ~~i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~a 84 (217)
T cd03145 15 RAILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDA 84 (217)
T ss_pred HHHHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhC
Confidence 334445555544 345666665554 89999999999999985 5677776432 334455555443
No 306
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=39.36 E-value=12 Score=29.60 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=28.5
Q ss_pred hhcCCCEEEEecCCChhHHHHHHHHHh-------cCCCCEEEEccCCC
Q 033975 43 SIFSNKIVIFSKSYCPYCLRAKRIFAD-------LNEQPFVVELDLRV 83 (107)
Q Consensus 43 ~i~~~~Vvvfsks~CPyC~~aK~lL~~-------lgv~~~vidID~~~ 83 (107)
+....=.+.|..+|||-|...+..|.. ++|..-.+|+...+
T Consensus 37 ~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np 84 (248)
T KOG0913|consen 37 LLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP 84 (248)
T ss_pred hhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc
Confidence 334445678999999999998888863 44555566665544
No 307
>PHA03005 sulfhydryl oxidase; Provisional
Probab=39.09 E-value=1.2e+02 Score=20.64 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=36.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHhhhcCCCEEEEecCCChhHH-HHHHHHHhcCC
Q 033975 1 MKKRGWQSRFLVEAVGLLFFLLLGNAPTATEADHSVSAFVQNSIFSNKIVIFSKSYCPYCL-RAKRIFADLNE 72 (107)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~v~~~i~~~~Vvvfsks~CPyC~-~aK~lL~~lgv 72 (107)
|.-|-|-|.+.+ +. |++|-. ...-...|..++.+..+++.- =||-|+ .|++.+++.+|
T Consensus 1 MdPk~WGra~W~---vI--Fivi~k-~~~~~~iE~cK~~lytI~~tL--------PC~~Cr~HA~~ai~knni 59 (96)
T PHA03005 1 MNPKYWGRAIWT---VI--FIVISK-AKLDGNIEACKRKLYTICSTL--------PCPACRRHAKEAIEKNNI 59 (96)
T ss_pred CCcchhhhhHHH---HH--HHHHHh-ccCCCcHHHHHHHHHHhhhcC--------CCHHHHHHHHHHHhhcCc
Confidence 555677777664 22 333333 333346777788876655443 399999 48898887664
No 308
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=38.48 E-value=21 Score=28.05 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=18.9
Q ss_pred hhhcCCCEE--EEecCCChhHHHHH----HHHHhcC
Q 033975 42 NSIFSNKIV--IFSKSYCPYCLRAK----RIFADLN 71 (107)
Q Consensus 42 ~~i~~~~Vv--vfsks~CPyC~~aK----~lL~~lg 71 (107)
++....++. ..+..|||||...+ -+|+++|
T Consensus 53 d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 53 DLAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred ccCCCCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 344445544 45666799999655 4556777
No 309
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=38.46 E-value=1.1e+02 Score=24.63 Aligned_cols=56 Identities=4% Similarity=-0.096 Sum_probs=36.1
Q ss_pred HHHHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhccc
Q 033975 36 VSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTH 93 (107)
Q Consensus 36 ~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~ 93 (107)
..+.++.. ..++.|.+-+.--+-.++.+.|++.|+.+.++++..++.-..+.+.+.
T Consensus 14 l~~~l~~~--~~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~ 69 (374)
T cd08183 14 LPALAAEL--GRRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVA 69 (374)
T ss_pred HHHHHHHc--CCcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHH
Confidence 33344443 256666665544466778888888999888888766666555555543
No 310
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=37.34 E-value=56 Score=22.57 Aligned_cols=33 Identities=15% Similarity=0.001 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCCCEEEEccC-CCCchHhhhccc
Q 033975 61 LRAKRIFADLNEQPFVVELDL-RVYSFGSGRPTH 93 (107)
Q Consensus 61 ~~aK~lL~~lgv~~~vidID~-~~d~~~i~~~L~ 93 (107)
.++.++|++.+++|++++.+. ....++..+.++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~~t~~e~a~~~~ 35 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPESTRTAALAAEALG 35 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCCCcchHHHHHHHcC
Confidence 357788888888888888773 333344444443
No 311
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=36.75 E-value=23 Score=20.61 Aligned_cols=22 Identities=5% Similarity=0.173 Sum_probs=11.3
Q ss_pred HhcCCCCcccchhHHHHHHhhh
Q 033975 23 LGNAPTATEADHSVSAFVQNSI 44 (107)
Q Consensus 23 ~~~~~~~~~~~~~~k~~v~~~i 44 (107)
-|.+|+|+..+...++-+++++
T Consensus 16 gLasPgPvp~~~alkELIeELv 37 (43)
T PF03487_consen 16 GLASPGPVPSSTALKELIEELV 37 (43)
T ss_dssp -------S-HHHHHHHHHHHHH
T ss_pred ccCCCCCCCchHHHHHHHHHHH
Confidence 3556888888888888888775
No 312
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=36.36 E-value=1.2e+02 Score=20.25 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=28.0
Q ss_pred hhhcCCCEEEEecCCChhHHHHHHHHHhcCCCCEEEEcc
Q 033975 42 NSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELD 80 (107)
Q Consensus 42 ~~i~~~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID 80 (107)
.+-++.+|++|...+...+..+-.+|..+|.+ +..++
T Consensus 82 ~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~ 118 (128)
T cd01520 82 RLERDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLE 118 (128)
T ss_pred ccCCCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeC
Confidence 34467789999987777777888999999984 55554
No 313
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=36.34 E-value=35 Score=23.98 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=21.2
Q ss_pred HhhhcCCCEE--EEecCCChhHHHH--------HHHHHhcCCC-CEEEEcc
Q 033975 41 QNSIFSNKIV--IFSKSYCPYCLRA--------KRIFADLNEQ-PFVVELD 80 (107)
Q Consensus 41 ~~~i~~~~Vv--vfsks~CPyC~~a--------K~lL~~lgv~-~~vidID 80 (107)
.++....+++ .|-+.+||.|..- .+-|.++|+. ...+-.|
T Consensus 24 ~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 24 SELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred HHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 3333444555 4555669999864 3444555552 4444444
No 314
>PRK06703 flavodoxin; Provisional
Probab=35.38 E-value=98 Score=21.19 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=30.6
Q ss_pred hhHHHHHHhhh----cCCCEEEEecCCCh---hHHH---HHHHHHhcCCCC--EEEEccCCCC
Q 033975 34 HSVSAFVQNSI----FSNKIVIFSKSYCP---YCLR---AKRIFADLNEQP--FVVELDLRVY 84 (107)
Q Consensus 34 ~~~k~~v~~~i----~~~~Vvvfsks~CP---yC~~---aK~lL~~lgv~~--~vidID~~~d 84 (107)
...+.+++.+- +..++.+|+.-+-. ||.. ..+.|.++|... ..+.++..++
T Consensus 66 ~~~~~f~~~l~~~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~ 128 (151)
T PRK06703 66 YEAEDFHEDLENIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPE 128 (151)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCC
Confidence 35666666443 34578888653222 5765 778888888653 3455555554
No 315
>PRK05569 flavodoxin; Provisional
Probab=35.35 E-value=1.4e+02 Score=20.02 Aligned_cols=69 Identities=9% Similarity=0.026 Sum_probs=40.9
Q ss_pred HHhcCCCCccc---chhHHHHHHhhh----cCCCEEEEecCCC---hhHHHHHHHHHhcCCCC-EEEEccCCCCchHhhh
Q 033975 22 LLGNAPTATEA---DHSVSAFVQNSI----FSNKIVIFSKSYC---PYCLRAKRIFADLNEQP-FVVELDLRVYSFGSGR 90 (107)
Q Consensus 22 ~~~~~~~~~~~---~~~~k~~v~~~i----~~~~Vvvfsks~C---PyC~~aK~lL~~lgv~~-~vidID~~~d~~~i~~ 90 (107)
+++++|+--.. ..+.+.+++.+- +..++.+|+..+- ..-...++.|.+.|..+ ..+.+...|+..++.+
T Consensus 52 iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~~~ 131 (141)
T PRK05569 52 VAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAVNESPNKEELNS 131 (141)
T ss_pred EEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEEccCCCHHHHHH
Confidence 44555654222 246677777663 3557878876553 33345678888888654 3366666666655544
No 316
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=35.22 E-value=35 Score=25.01 Aligned_cols=46 Identities=13% Similarity=-0.039 Sum_probs=34.9
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccC
Q 033975 49 IVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHR 94 (107)
Q Consensus 49 Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~ 94 (107)
|++=|.+-=|+++++.+.|+++|++|++--..-+...+.+.+.++.
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~ 48 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKE 48 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHH
Confidence 3444555578999999999999999988777777776666666554
No 317
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=34.81 E-value=83 Score=25.64 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=39.9
Q ss_pred hHHHHHHhhhcCC-CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCc
Q 033975 35 SVSAFVQNSIFSN-KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYS 85 (107)
Q Consensus 35 ~~k~~v~~~i~~~-~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~ 85 (107)
--|++..++.++. +|++.+++==-=-.-+|++.+++++....+.+|-.++.
T Consensus 61 IGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~ 112 (312)
T KOG1014|consen 61 IGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGD 112 (312)
T ss_pred chHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCc
Confidence 4588899999765 89999998777777889999999987777777655443
No 318
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=34.66 E-value=1.3e+02 Score=21.93 Aligned_cols=34 Identities=15% Similarity=0.380 Sum_probs=23.5
Q ss_pred CCCEEEEe-cCCChhHHH-HHHHHHhcCCCC-EEEEc
Q 033975 46 SNKIVIFS-KSYCPYCLR-AKRIFADLNEQP-FVVEL 79 (107)
Q Consensus 46 ~~~Vvvfs-ks~CPyC~~-aK~lL~~lgv~~-~vidI 79 (107)
...++||. ++-|+||.. +..+.+++|++. .+++.
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEec
Confidence 44555554 677999995 667778899985 45544
No 319
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=34.65 E-value=92 Score=21.30 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=27.3
Q ss_pred hcCCCEEEEecCC-ChhHHHHHHHHHh----cC--CCCEEEEccCC-CCchHhhhcc
Q 033975 44 IFSNKIVIFSKSY-CPYCLRAKRIFAD----LN--EQPFVVELDLR-VYSFGSGRPT 92 (107)
Q Consensus 44 i~~~~Vvvfsks~-CPyC~~aK~lL~~----lg--v~~~vidID~~-~d~~~i~~~L 92 (107)
-+..++++|=.++ ||-...|.+-|.+ .. +++.++|+=.. +--.+|.+.+
T Consensus 17 S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~ 73 (105)
T PF11009_consen 17 SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDF 73 (105)
T ss_dssp ---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHH
T ss_pred cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHh
Confidence 4467899998888 9999988877753 22 66777777333 2223444443
No 320
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=34.58 E-value=25 Score=23.87 Aligned_cols=15 Identities=0% Similarity=-0.219 Sum_probs=8.2
Q ss_pred CCCEEEEccCCCCch
Q 033975 72 EQPFVVELDLRVYSF 86 (107)
Q Consensus 72 v~~~vidID~~~d~~ 86 (107)
+.++.|||...++..
T Consensus 38 f~~~YiDi~~p~~~~ 52 (93)
T PF07315_consen 38 FEFTYIDIENPPEND 52 (93)
T ss_dssp EEEEEEETTT----H
T ss_pred eEEEEEecCCCCccH
Confidence 456899998776654
No 321
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=34.55 E-value=70 Score=26.00 Aligned_cols=46 Identities=9% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHHHHhhhcCC---CEEEEecCCChhHH----HHHHHHHhcCCCCEEEEccC
Q 033975 36 VSAFVQNSIFSN---KIVIFSKSYCPYCL----RAKRIFADLNEQPFVVELDL 81 (107)
Q Consensus 36 ~k~~v~~~i~~~---~Vvvfsks~CPyC~----~aK~lL~~lgv~~~vidID~ 81 (107)
-.+.+.+++++. -|+.+...+|-.=. .+++.|++.|+++-.+|++.
T Consensus 309 R~~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~ 361 (380)
T TIGR02263 309 KGKYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAE 361 (380)
T ss_pred HHHHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecC
Confidence 345566666543 58888888886544 67899999999999999987
No 322
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=33.89 E-value=21 Score=24.33 Aligned_cols=66 Identities=9% Similarity=-0.031 Sum_probs=42.3
Q ss_pred hhHHHHHHhhhcC---CCEEEEecCC----ChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCC
Q 033975 34 HSVSAFVQNSIFS---NKIVIFSKSY----CPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLC 99 (107)
Q Consensus 34 ~~~k~~v~~~i~~---~~Vvvfsks~----CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~ 99 (107)
++.+..++.+-.. +.+.++.-.. --|=+..++..+++|+.+..+.++.+...+++.+.+.+++...
T Consensus 14 ~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~ 86 (117)
T PF00763_consen 14 EELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDP 86 (117)
T ss_dssp HHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 3455556665544 4444444333 3355567788889999999999988888888888888766543
No 323
>PRK06756 flavodoxin; Provisional
Probab=33.81 E-value=78 Score=21.61 Aligned_cols=68 Identities=9% Similarity=-0.080 Sum_probs=38.0
Q ss_pred HHhcCCCCc-c-cchhHHHHHHhhh----cCCCEEEEecCC------ChhHHHHHHHHHhcCCCC--EEEEccCCCCchH
Q 033975 22 LLGNAPTAT-E-ADHSVSAFVQNSI----FSNKIVIFSKSY------CPYCLRAKRIFADLNEQP--FVVELDLRVYSFG 87 (107)
Q Consensus 22 ~~~~~~~~~-~-~~~~~k~~v~~~i----~~~~Vvvfsks~------CPyC~~aK~lL~~lgv~~--~vidID~~~d~~~ 87 (107)
+++++|+-- . .......+++.+. +..++.+|+... |..-+...+.|.++|... ..+.+...|+..+
T Consensus 53 vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d 132 (148)
T PRK06756 53 IILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELTPEDED 132 (148)
T ss_pred EEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecCCCHHH
Confidence 345555532 2 2335777777653 455788886611 444445666777777543 3455566776655
Q ss_pred hh
Q 033975 88 SG 89 (107)
Q Consensus 88 i~ 89 (107)
+.
T Consensus 133 ~~ 134 (148)
T PRK06756 133 VE 134 (148)
T ss_pred HH
Confidence 43
No 324
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=33.12 E-value=45 Score=21.35 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=20.8
Q ss_pred CChhHH-----HHHHHHHhcCCCCEEEEccCCCCchHhhhcccCC
Q 033975 56 YCPYCL-----RAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRP 95 (107)
Q Consensus 56 ~CPyC~-----~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~ 95 (107)
-|+||. .+..+|++. .+++.++|+++|...
T Consensus 25 QCGfCtpG~im~~~~ll~~~----------~~p~~~ei~~al~gn 59 (75)
T PF01799_consen 25 QCGFCTPGMIMAAYALLRRN----------PDPTEEEIREALSGN 59 (75)
T ss_dssp SSSSSHHHHHHHHHHHHHHS----------SS-CHHHHHHHTTTS
T ss_pred cCCcchHHHHHHHHHHhhcc----------cchhhHHHHHHHHcC
Confidence 399998 567777763 355778888888653
No 325
>smart00189 IL2 Interleukin-2 family. Interleukin-2 is a cytokine produced by T-helper cells in response to antigenic or mitogenic stimulation. This protein is required for T-cell proliferation and other activities crucial to the regulation of the immune response.
Probab=32.82 E-value=1e+02 Score=22.54 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCCcccchhHHHHHHhhh
Q 033975 8 SRFLVEAVGLLFFLLLGNA-PTATEADHSVSAFVQNSI 44 (107)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~v~~~i 44 (107)
|+|-..+|+++ +++++.. +....+..++++.++.+.
T Consensus 2 ykmqLlsCiaL-tLaL~~nsAPtsSstkeTqqqleqLL 38 (154)
T smart00189 2 YKIQLLSCIAL-TLALLTNSAPTSSSTKSTQQHLEQLL 38 (154)
T ss_pred chhHHHHHHHH-HHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 67888999994 4665544 333444556666665544
No 326
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=32.47 E-value=82 Score=22.37 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=20.7
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHh
Q 033975 45 FSNKIVIFSKSYCPYCLRAKRIFAD 69 (107)
Q Consensus 45 ~~~~Vvvfsks~CPyC~~aK~lL~~ 69 (107)
...+|++..+-.|.|-.+++.+-++
T Consensus 66 ~~g~IvLV~RG~CtF~~Kv~nAq~a 90 (153)
T cd02123 66 SGSFIVLIRRGNCSFETKVRNAQRA 90 (153)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHC
Confidence 3568999999999999999887663
No 327
>PRK07308 flavodoxin; Validated
Probab=32.43 E-value=73 Score=21.78 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=37.4
Q ss_pred HhcCCCCc--ccchhHHHHHHhhh----cCCCEEEEecC---CChhHHHHH---HHHHhcCCCC--EEEEccCCCCchHh
Q 033975 23 LGNAPTAT--EADHSVSAFVQNSI----FSNKIVIFSKS---YCPYCLRAK---RIFADLNEQP--FVVELDLRVYSFGS 88 (107)
Q Consensus 23 ~~~~~~~~--~~~~~~k~~v~~~i----~~~~Vvvfsks---~CPyC~~aK---~lL~~lgv~~--~vidID~~~d~~~i 88 (107)
++++|+-- ...+....+++.+- +..++.+|..- +=-||..++ +.|.++|... ..+.++..++..++
T Consensus 53 i~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~ 132 (146)
T PRK07308 53 IVATYTYGDGELPDEIVDFYEDLADLDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDI 132 (146)
T ss_pred EEEeCccCCCCCCHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHH
Confidence 44454442 23345677766653 44577788771 111465444 5666777543 45777777765554
Q ss_pred h
Q 033975 89 G 89 (107)
Q Consensus 89 ~ 89 (107)
+
T Consensus 133 ~ 133 (146)
T PRK07308 133 E 133 (146)
T ss_pred H
Confidence 4
No 328
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=32.26 E-value=65 Score=26.96 Aligned_cols=37 Identities=8% Similarity=0.089 Sum_probs=24.0
Q ss_pred hhHHHHHHhhhc----CCCEEEEecCCChhHHHHHHHHHhcC
Q 033975 34 HSVSAFVQNSIF----SNKIVIFSKSYCPYCLRAKRIFADLN 71 (107)
Q Consensus 34 ~~~k~~v~~~i~----~~~Vvvfsks~CPyC~~aK~lL~~lg 71 (107)
++.+++++++.. .-.+.+|.- .|++|..++++|+++.
T Consensus 4 ~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (515)
T TIGR03140 4 QSLLAQLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEIA 44 (515)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHHH
Confidence 344555555443 324445655 6999999999998654
No 329
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=31.61 E-value=96 Score=23.88 Aligned_cols=75 Identities=17% Similarity=0.128 Sum_probs=43.1
Q ss_pred HHhcCCCCcccchhHHHHHHhhhc-CCCEEEEecCC---ChhHHHHHHHHHhcCCC-CEEEEccCCC--CchHhhhcccC
Q 033975 22 LLGNAPTATEADHSVSAFVQNSIF-SNKIVIFSKSY---CPYCLRAKRIFADLNEQ-PFVVELDLRV--YSFGSGRPTHR 94 (107)
Q Consensus 22 ~~~~~~~~~~~~~~~k~~v~~~i~-~~~Vvvfsks~---CPyC~~aK~lL~~lgv~-~~vidID~~~--d~~~i~~~L~~ 94 (107)
.|++.+......+-.+.+++..-+ .++|.+....+ =.|+....+.|.++|.. ..+++++..+ +..++.+.|..
T Consensus 3 ~iGG~~~~~~~~~i~~~~~~lag~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ 82 (250)
T TIGR02069 3 IIGGAEDKVGDREILREFVSRAGGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSN 82 (250)
T ss_pred EEeCccccCChHHHHHHHHHHhCCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhh
Confidence 344444332333344555555543 34677664322 35688999999999985 6788886543 22455555555
Q ss_pred CC
Q 033975 95 PT 96 (107)
Q Consensus 95 ~t 96 (107)
.+
T Consensus 83 ad 84 (250)
T TIGR02069 83 AT 84 (250)
T ss_pred CC
Confidence 43
No 330
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=30.90 E-value=55 Score=22.74 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCCEEEEccCCC
Q 033975 62 RAKRIFADLNEQPFVVELDLRV 83 (107)
Q Consensus 62 ~aK~lL~~lgv~~~vidID~~~ 83 (107)
.+.++|+++|++|.+++-+..+
T Consensus 3 ~~~~~L~~~~i~~~~~~h~~~~ 24 (152)
T cd00002 3 PAIRLLDKAKIPYELHEYEHDE 24 (152)
T ss_pred HHHHHHHHcCCCeEEEeecCCC
Confidence 4788999999999999987544
No 331
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.09 E-value=52 Score=26.31 Aligned_cols=67 Identities=12% Similarity=-0.041 Sum_probs=46.3
Q ss_pred hhHHHHHHhhhcCCCEEEEecCC----ChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCC
Q 033975 34 HSVSAFVQNSIFSNKIVIFSKSY----CPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCE 100 (107)
Q Consensus 34 ~~~k~~v~~~i~~~~Vvvfsks~----CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s 100 (107)
++.++.++.+-..+++.++--.. --|=+.-++.-++.|+.++.+++..+-..+++.+.+.+++...+
T Consensus 14 ~~~k~~v~~l~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~ 84 (287)
T PRK14181 14 ATIKENISASSTAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPN 84 (287)
T ss_pred HHHHHHHHHhCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 44555555543334454444433 55666777888899999999999888777888888888876543
No 332
>KOG2965 consensus Arginase [Amino acid transport and metabolism]
Probab=30.03 E-value=25 Score=28.49 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=46.3
Q ss_pred HHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCC-EEEEccCCCCchHhhhcccCCCCCCCcccc
Q 033975 39 FVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQP-FVVELDLRVYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 39 ~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lgv~~-~vidID~~~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
++...|+.+++......--- ..-+.+|+++||.+ ...|+|+---++-+++++...++.+.-|.|
T Consensus 172 w~~p~i~~~~l~yIGLRDvd--p~E~~iLk~lgI~~fsm~~Vdk~GI~~Vme~a~~~v~~~~~rpih 236 (318)
T KOG2965|consen 172 WVKPCISPKRLAYIGLRDVD--PGEHAILKELGIAAFSMHEVDKYGIQKVMEMAMELVNPGTRRPIH 236 (318)
T ss_pred ccccccChhheEEEecccCC--hHHHHHHHhcCcceEeehhhHhhhHHHHHHHHHHHhcCCCcccee
Confidence 44555666666655543321 13467899999985 688999888888999999999998887765
No 333
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=30.02 E-value=38 Score=21.84 Aligned_cols=37 Identities=5% Similarity=-0.036 Sum_probs=27.3
Q ss_pred HHHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCC
Q 033975 37 SAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQP 74 (107)
Q Consensus 37 k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lgv~~ 74 (107)
+..++++... ++..|.-|+..+-..+.+++.++|..|
T Consensus 86 ~~~l~~~~g~-~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 86 REILEEITGR-PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp HHHHHHHHSS-EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHHHHhCC-CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 4455555545 788899999999999999999998765
No 334
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.96 E-value=1.5e+02 Score=23.79 Aligned_cols=66 Identities=8% Similarity=0.033 Sum_probs=45.9
Q ss_pred hhHHHHHHhhhcC----CCEEEEecC----CChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCC
Q 033975 34 HSVSAFVQNSIFS----NKIVIFSKS----YCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLC 99 (107)
Q Consensus 34 ~~~k~~v~~~i~~----~~Vvvfsks----~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~ 99 (107)
++.++.++.+... +++.+.-.. .--|=+..++.-++.|+.++.++++.+-..+++.+.+.+++...
T Consensus 16 ~~lk~~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 89 (297)
T PRK14186 16 QRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDE 89 (297)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4455556654332 334444333 35666777788899999999999988877788888888887654
No 335
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=29.81 E-value=1e+02 Score=24.27 Aligned_cols=58 Identities=9% Similarity=0.025 Sum_probs=41.6
Q ss_pred hHHHHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCC-CCEEEEccCCC--CchHhhhccc
Q 033975 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNE-QPFVVELDLRV--YSFGSGRPTH 93 (107)
Q Consensus 35 ~~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lgv-~~~vidID~~~--d~~~i~~~L~ 93 (107)
.+..|++.. ..+.+.+|+..+|+=.--+|.+|.+++- ...+|+|+.++ +-.++.+.|.
T Consensus 42 Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~ 102 (249)
T PF05673_consen 42 NTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLR 102 (249)
T ss_pred HHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHh
Confidence 345566665 5678999999999999999999987764 46788886553 3345555554
No 336
>PRK09271 flavodoxin; Provisional
Probab=29.46 E-value=1.5e+02 Score=20.72 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=36.1
Q ss_pred HHHhcCCCCc--ccchhHHHHHHhhh----cCCCEEEEec---CCCh--hHHHHHHHHHhcCCCCEEEEccCC
Q 033975 21 LLLGNAPTAT--EADHSVSAFVQNSI----FSNKIVIFSK---SYCP--YCLRAKRIFADLNEQPFVVELDLR 82 (107)
Q Consensus 21 ~~~~~~~~~~--~~~~~~k~~v~~~i----~~~~Vvvfsk---s~CP--yC~~aK~lL~~lgv~~~vidID~~ 82 (107)
++++++|+-- ...++...+++.+. +..++.+|+. .|=+ ||..++.+=..+......+.++..
T Consensus 54 ~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~~~~l~~~~~ 126 (160)
T PRK09271 54 LYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSSYPRLKIEQM 126 (160)
T ss_pred EEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhccCCceeeecC
Confidence 3455555431 22345667766654 3346888887 5643 899888766666544444555544
No 337
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.99 E-value=2e+02 Score=22.93 Aligned_cols=66 Identities=12% Similarity=-0.064 Sum_probs=46.1
Q ss_pred hhHHHHHHhhhcCCCEEEEecCC----ChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCC
Q 033975 34 HSVSAFVQNSIFSNKIVIFSKSY----CPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLC 99 (107)
Q Consensus 34 ~~~k~~v~~~i~~~~Vvvfsks~----CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~ 99 (107)
++.++.++.+-..+.+.++-... --|=+.-++.-++.|+.++.++++.+-..+++.+.+.+++...
T Consensus 17 ~~l~~~v~~l~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 86 (287)
T PRK14173 17 AELRARLAKLPFVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNADP 86 (287)
T ss_pred HHHHHHHHHhCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44555555543334454444433 5566677788899999999999988877788888888887654
No 338
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=28.99 E-value=1.8e+02 Score=23.59 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=39.4
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHhcCCC--CEEEEccCCCCc---hHhhhcccCCCCCCCcccccc
Q 033975 45 FSNKIVIFSKSYCPYCLRAKRIFADLNEQ--PFVVELDLRVYS---FGSGRPTHRPTNLCEWRTHWW 106 (107)
Q Consensus 45 ~~~~Vvvfsks~CPyC~~aK~lL~~lgv~--~~vidID~~~d~---~~i~~~L~~~tg~~s~P~~~~ 106 (107)
.+.+|+++.. +|||=..+.++=.+.+++ ...+-....+++ +.+-..-.....+..+|..|.
T Consensus 210 ~sg~Il~l~~-~~Pwk~~l~~le~e~~~~~~i~fvi~p~~~~~wriq~Vp~~~~sF~~R~~LP~~Wr 275 (318)
T PF03690_consen 210 PSGRILVLDR-SCPWKEHLFELEEELKIEGEILFVIYPDGSGGWRIQAVPVSPGSFENRKPLPEEWR 275 (318)
T ss_pred CCCCEEEecC-CCcHHHHHHHHhhhhCCCCceEEEEEECCCCCEEEEEecCCCCCcccccCCChhhC
Confidence 3678998888 999988888887777763 222222222233 233445566778888888884
No 339
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=28.64 E-value=57 Score=23.51 Aligned_cols=21 Identities=19% Similarity=0.596 Sum_probs=15.2
Q ss_pred EEecCCChhHHHHHHHHHhcC
Q 033975 51 IFSKSYCPYCLRAKRIFADLN 71 (107)
Q Consensus 51 vfsks~CPyC~~aK~lL~~lg 71 (107)
+|.-|-|++|-.....+.++.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~ 22 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLK 22 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHHH
Confidence 689999999998887776554
No 340
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=28.52 E-value=1.3e+02 Score=25.17 Aligned_cols=48 Identities=10% Similarity=-0.022 Sum_probs=35.7
Q ss_pred HHHHHHhhhcCC---CEEEEecCCChhHH----HHHHHHHhcCCCCEEEEccCCC
Q 033975 36 VSAFVQNSIFSN---KIVIFSKSYCPYCL----RAKRIFADLNEQPFVVELDLRV 83 (107)
Q Consensus 36 ~k~~v~~~i~~~---~Vvvfsks~CPyC~----~aK~lL~~lgv~~~vidID~~~ 83 (107)
-.+.+.+++++. -|+.++..+|..-. .+++.+.+.|+++-.||-|..+
T Consensus 349 R~~~l~~li~e~~vDGVI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ietD~~d 403 (430)
T TIGR03191 349 KSEMMLNIARDWNVDGCMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFEGNMGD 403 (430)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEECCCCC
Confidence 344555566443 58899999996543 5788899999999999998665
No 341
>PF15616 TerY-C: TerY-C metal binding domain
Probab=28.38 E-value=17 Score=25.95 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=17.5
Q ss_pred hhHHHHHHhhhcCCCEE---EEecCCChhHHHH
Q 033975 34 HSVSAFVQNSIFSNKIV---IFSKSYCPYCLRA 63 (107)
Q Consensus 34 ~~~k~~v~~~i~~~~Vv---vfsks~CPyC~~a 63 (107)
++..+..+.-....+|- ++..|+||||-..
T Consensus 54 e~Y~~~sd~~~~~~~vntseL~g~PgCP~CGn~ 86 (131)
T PF15616_consen 54 EDYFQWSDERSNNQKVNTSELIGAPGCPHCGNQ 86 (131)
T ss_pred chhhhhcCCCccCcEEehHHhcCCCCCCCCcCh
Confidence 34444444444333443 6777999999764
No 342
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=28.08 E-value=53 Score=21.05 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=32.4
Q ss_pred EEEecCCChhHHH----HHHHHHhc-CCCC--EEEEccCCCCchHhhhcccCCCCCCCcc
Q 033975 50 VIFSKSYCPYCLR----AKRIFADL-NEQP--FVVELDLRVYSFGSGRPTHRPTNLCEWR 102 (107)
Q Consensus 50 vvfsks~CPyC~~----aK~lL~~l-gv~~--~vidID~~~d~~~i~~~L~~~tg~~s~P 102 (107)
.+|....-|-..+ .+++++++ +-+| ++||+.++++-++..+.+.--|=.+.+|
T Consensus 5 ~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P 64 (72)
T cd02978 5 RLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLP 64 (72)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcCC
Confidence 4555555555553 44555554 3334 7999999999888777666544444443
No 343
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.35 E-value=98 Score=21.48 Aligned_cols=39 Identities=8% Similarity=-0.095 Sum_probs=27.8
Q ss_pred CEEEEecCCChhHH------HHHHHHHhcCCCCEEEEccCCCCch
Q 033975 48 KIVIFSKSYCPYCL------RAKRIFADLNEQPFVVELDLRVYSF 86 (107)
Q Consensus 48 ~Vvvfsks~CPyC~------~aK~lL~~lgv~~~vidID~~~d~~ 86 (107)
.|.+|+++.-+.-. .+-.+|+..++.+..+||...++..
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~ 47 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVR 47 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhH
Confidence 45667766665544 5667899999999999987665443
No 344
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=27.04 E-value=66 Score=25.87 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccc---c---hhHHHHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcC-----CCCEE
Q 033975 8 SRFLVEAVGLLFFLLLGNAPTATEA---D---HSVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLN-----EQPFV 76 (107)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lg-----v~~~v 76 (107)
.+.|--+-+..+|=-|-..|+==.+ . +.....+.+.+.+.- ..---+|+.|.+++-+|+.+. +.|.-
T Consensus 32 ~k~~YD~~Gs~LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~i~~~~--~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~p 109 (319)
T TIGR03439 32 TLLLYDDEGLKLFEEITYSPEYYLTNDEIEILKKHSSDIAASIPSGS--MLVELGSGNLRKVGILLEALERQKKSVDYYA 109 (319)
T ss_pred hHhhhcchHHHHHHHHHcCCccCChHHHHHHHHHHHHHHHHhcCCCC--EEEEECCCchHHHHHHHHHHHhcCCCceEEE
Confidence 3445545555555555555433211 1 122223333343332 233678999999999988763 45777
Q ss_pred EEccCCCCchHhhhcccCCC
Q 033975 77 VELDLRVYSFGSGRPTHRPT 96 (107)
Q Consensus 77 idID~~~d~~~i~~~L~~~t 96 (107)
+||+. +.+++.+.++.
T Consensus 110 lDIS~----~~L~~a~~~L~ 125 (319)
T TIGR03439 110 LDVSR----SELQRTLAELP 125 (319)
T ss_pred EECCH----HHHHHHHHhhh
Confidence 77753 34444444443
No 345
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=26.99 E-value=17 Score=21.32 Aligned_cols=6 Identities=50% Similarity=1.796 Sum_probs=4.9
Q ss_pred ChhHHH
Q 033975 57 CPYCLR 62 (107)
Q Consensus 57 CPyC~~ 62 (107)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 899974
No 346
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=26.43 E-value=1.3e+02 Score=24.78 Aligned_cols=82 Identities=11% Similarity=-0.083 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhcC-----CCCcccchhHHHHHH---hhhcCCCEEEEecCC--Chh--HHHHHHHHHhcCCCCEEEE
Q 033975 11 LVEAVGLLFFLLLGNA-----PTATEADHSVSAFVQ---NSIFSNKIVIFSKSY--CPY--CLRAKRIFADLNEQPFVVE 78 (107)
Q Consensus 11 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~k~~v~---~~i~~~~Vvvfsks~--CPy--C~~aK~lL~~lgv~~~vid 78 (107)
+|.++.+|.+|.+++. |+. .-.....+.++ ..+.++.|-|.+-.+ .|. -..++++.+++|+.+.+--
T Consensus 27 l~~d~LaE~tma~~~~~~~~~p~~-gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~ 105 (362)
T PF07287_consen 27 LVGDYLAERTMAILARAKRKDPTK-GYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAV 105 (362)
T ss_pred EEEecHHHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEE
Confidence 4567888999999984 332 11222222222 223345555555444 443 3468899999999988777
Q ss_pred ccCCCCchHhhhccc
Q 033975 79 LDLRVYSFGSGRPTH 93 (107)
Q Consensus 79 ID~~~d~~~i~~~L~ 93 (107)
|..++..+.+.+.+.
T Consensus 106 V~gDd~~~~v~~~~~ 120 (362)
T PF07287_consen 106 VYGDDLKDEVKELLA 120 (362)
T ss_pred EECccchHhHHHHHh
Confidence 767777667666554
No 347
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.97 E-value=67 Score=25.33 Aligned_cols=53 Identities=8% Similarity=0.068 Sum_probs=36.7
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCCC--EEEEccCCCCchHhhhcccCCCCCCCccccc
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQP--FVVELDLRVYSFGSGRPTHRPTNLCEWRTHW 105 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~lgv~~--~vidID~~~d~~~i~~~L~~~tg~~s~P~~~ 105 (107)
...|.+|..-+|--|.-.-+.|...|.-. .++|-..- -.+...++.-|+|.||
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p-------~f~~~~~~V~SvP~Vf 64 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELP-------PFLAFEKGVISVPSVF 64 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCC-------hHHHhhcceeecceEE
Confidence 34788999999999999999999988654 34443222 1233445666777776
No 348
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=25.92 E-value=1.9e+02 Score=20.81 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=29.3
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHhcC--CCCEEEEccCCCCchHh
Q 033975 45 FSNKIVIFSKSYCPYCLRAKRIFADLN--EQPFVVELDLRVYSFGS 88 (107)
Q Consensus 45 ~~~~Vvvfsks~CPyC~~aK~lL~~lg--v~~~vidID~~~d~~~i 88 (107)
+....+|+.-.-||+|....++|.++- -.+...++- .+.|.+.
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q-~e~g~~~ 50 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQ-SEPGQAL 50 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEecc-CchhhhH
Confidence 455678888899999999999997653 445555552 3344443
No 349
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=25.88 E-value=95 Score=26.40 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=39.8
Q ss_pred CCCEEEEecCC---ChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCCccccccC
Q 033975 46 SNKIVIFSKSY---CPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCEWRTHWWC 107 (107)
Q Consensus 46 ~~~Vvvfsks~---CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s~P~~~~~ 107 (107)
+++|-+|...- =.-|..--+.+.+..-+....-+|...|+..=|+.+.+.....-+|+||.|
T Consensus 343 ~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHiiDSs~~g~l~~e~ler~~~~~~~~sv~fC 407 (438)
T COG4097 343 DPPVHLFYCSRNWEEALYAEELRALAQKLPNVVLHIIDSSKDGYLDQEDLERYPDRPRTRSVFFC 407 (438)
T ss_pred CCceEEEEEecCCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccCHHHhhccccccCcceEEEE
Confidence 45676664322 122333444455544455555578888998888888888666668999987
No 350
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=25.74 E-value=1.3e+02 Score=20.00 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=27.2
Q ss_pred CCCEEEEecCC-ChhHHHHHHHHHhcCCCCEEEEcc
Q 033975 46 SNKIVIFSKSY-CPYCLRAKRIFADLNEQPFVVELD 80 (107)
Q Consensus 46 ~~~Vvvfsks~-CPyC~~aK~lL~~lgv~~~vidID 80 (107)
..++++++--. ...|.+|.+.|.+.|+...++|+-
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeE
Confidence 34666655544 788999999999999999888874
No 351
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.70 E-value=91 Score=24.86 Aligned_cols=67 Identities=3% Similarity=-0.148 Sum_probs=46.6
Q ss_pred hhHHHHHHhhhc---CCCEEEEecC----CChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCC
Q 033975 34 HSVSAFVQNSIF---SNKIVIFSKS----YCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCE 100 (107)
Q Consensus 34 ~~~k~~v~~~i~---~~~Vvvfsks----~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s 100 (107)
++.++.++.+-. .+++.+.... .--|=+...+..++.|+.++.++++.+-..+++.+.+.+++...+
T Consensus 17 ~~lk~~i~~l~~~g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~ 90 (285)
T PRK14189 17 AEAAQRAAALTARGHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPK 90 (285)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 445555555422 2334333333 355666778888999999999999988888889999998877543
No 352
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.18 E-value=1.7e+02 Score=23.31 Aligned_cols=67 Identities=6% Similarity=-0.096 Sum_probs=46.1
Q ss_pred hhHHHHHHhhhc---CCCEEEEecC----CChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCC
Q 033975 34 HSVSAFVQNSIF---SNKIVIFSKS----YCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCE 100 (107)
Q Consensus 34 ~~~k~~v~~~i~---~~~Vvvfsks----~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s 100 (107)
++.++.++.+-. .+.+.++--. ..-|=+.-++.-++.|+.++.++++.+-..+++.+.+.+++...+
T Consensus 15 ~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~ 88 (282)
T PRK14166 15 EELKEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDS 88 (282)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 344555555421 2334443333 366777778888999999999999888777888888888876543
No 353
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=24.76 E-value=1.8e+02 Score=19.72 Aligned_cols=33 Identities=9% Similarity=0.287 Sum_probs=22.9
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCC-CEEEEc
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQ-PFVVEL 79 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~lgv~-~~vidI 79 (107)
..+|++.-+-.|+|-.+++.+- +.|-. .-++|.
T Consensus 34 ~g~I~Lv~RG~C~F~~K~~~Aq-~aGA~avII~n~ 67 (118)
T cd02127 34 NGNIALIERGGCSFLTKAINAQ-KAGALAVIITDV 67 (118)
T ss_pred CCeEEEEECCCCCHHHHHHHHH-HCCCcEEEEEEC
Confidence 4578899999999999988744 45533 344443
No 354
>PRK04195 replication factor C large subunit; Provisional
Probab=24.60 E-value=2.5e+02 Score=23.35 Aligned_cols=48 Identities=6% Similarity=-0.056 Sum_probs=32.1
Q ss_pred CCCEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhccc
Q 033975 46 SNKIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTH 93 (107)
Q Consensus 46 ~~~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~ 93 (107)
...+.+|+-++|+=-..++.+.++++..+..++.........+...+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~ 86 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAG 86 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHH
Confidence 456899999999999999999998875544444332222344444433
No 355
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=24.10 E-value=40 Score=25.23 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCC-CCEEEEcc
Q 033975 59 YCLRAKRIFADLNE-QPFVVELD 80 (107)
Q Consensus 59 yC~~aK~lL~~lgv-~~~vidID 80 (107)
-=..++++.+.+++ ++.+||++
T Consensus 40 El~~a~~i~~~l~v~~~~~i~l~ 62 (209)
T PF06508_consen 40 ELEAAKKIAKKLGVKEHEVIDLS 62 (209)
T ss_dssp HHHHHHHHHHHCT-SEEEEEE-C
T ss_pred HHHHHHHHHHHhCCCCCEEeeHH
Confidence 34578999999999 88999998
No 356
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=23.98 E-value=46 Score=27.14 Aligned_cols=68 Identities=10% Similarity=-0.077 Sum_probs=43.4
Q ss_pred CCCcccchhHHHHHHhhhcCC-------C-EEEEecCC------Ch----hHHHHHHHHHhcCCCCEEEEccCCCCchHh
Q 033975 27 PTATEADHSVSAFVQNSIFSN-------K-IVIFSKSY------CP----YCLRAKRIFADLNEQPFVVELDLRVYSFGS 88 (107)
Q Consensus 27 ~~~~~~~~~~k~~v~~~i~~~-------~-Vvvfsks~------CP----yC~~aK~lL~~lgv~~~vidID~~~d~~~i 88 (107)
|..-|.+|-.--.++-+.+-. + +++.+-.+ .| +.+.++.+|+.++++|.+++=+.++....+
T Consensus 53 ~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~ 132 (361)
T TIGR03297 53 AAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRITLSLLDALEIPWEVLSTDNDEALAQI 132 (361)
T ss_pred cEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHHHHHHHHHcCCCEEECCCChHHHHHHH
Confidence 666777777777777775441 2 23444444 23 477889999999999999853444444555
Q ss_pred hhcccC
Q 033975 89 GRPTHR 94 (107)
Q Consensus 89 ~~~L~~ 94 (107)
.+++..
T Consensus 133 ~~a~~~ 138 (361)
T TIGR03297 133 ERALAH 138 (361)
T ss_pred HHHHHH
Confidence 555443
No 357
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.94 E-value=98 Score=24.67 Aligned_cols=67 Identities=13% Similarity=0.053 Sum_probs=45.9
Q ss_pred hhHHHHHHhhhc----CCCEEEEecCC----ChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCC
Q 033975 34 HSVSAFVQNSIF----SNKIVIFSKSY----CPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCE 100 (107)
Q Consensus 34 ~~~k~~v~~~i~----~~~Vvvfsks~----CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s 100 (107)
++.++.++.+.. .+++.+..... --|=+..++..+++|+.++.++++.+...+++.+.+.+++...+
T Consensus 15 ~~lk~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 89 (282)
T PRK14180 15 ERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSS 89 (282)
T ss_pred HHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 344555555432 23444443333 45666677888999999999999988888889998888876543
No 358
>COG2115 XylA Xylose isomerase [Carbohydrate transport and metabolism]
Probab=23.41 E-value=77 Score=26.62 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCCE-EEEccCCCCchHhhhcc
Q 033975 62 RAKRIFADLNEQPF-VVELDLRVYSFGSGRPT 92 (107)
Q Consensus 62 ~aK~lL~~lgv~~~-vidID~~~d~~~i~~~L 92 (107)
.+-+++.++|++|. ..|+|..|+|..+++..
T Consensus 86 ~aFEff~kL~vpyyCFHD~DvaPeG~~l~E~~ 117 (438)
T COG2115 86 VAFEFFEKLGVPYYCFHDVDVAPEGASLKEYY 117 (438)
T ss_pred HHHHHHHHhCCCeEeecccccCCCcccHHHHH
Confidence 45678999999975 67999999997665543
No 359
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=23.39 E-value=82 Score=18.69 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=16.0
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCEEEEc
Q 033975 51 IFSKSYCPYCLRAKRIFADLNEQPFVVEL 79 (107)
Q Consensus 51 vfsks~CPyC~~aK~lL~~lgv~~~vidI 79 (107)
+|+...=.-..-++.+|++.||++.+.+-
T Consensus 3 l~~~~~~~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 3 LYTAGDPIEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp EEEE--HHHHHHHHHHHHHTT--EE--S-
T ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEECC
Confidence 44444444566789999999999887653
No 360
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=22.87 E-value=1.6e+02 Score=19.90 Aligned_cols=42 Identities=2% Similarity=0.007 Sum_probs=22.2
Q ss_pred CChhHH------HHHHHHHhcCCCCEEEEccCC-CCchHhhhcccCCCCCCCcccc
Q 033975 56 YCPYCL------RAKRIFADLNEQPFVVELDLR-VYSFGSGRPTHRPTNLCEWRTH 104 (107)
Q Consensus 56 ~CPyC~------~aK~lL~~lgv~~~vidID~~-~d~~~i~~~L~~~tg~~s~P~~ 104 (107)
||-||+ .+.++|++ ++..+-.|.. ++|.++.. .-+.+++|+.
T Consensus 32 ~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~~eg~~la~----~l~~~~~P~~ 80 (116)
T cd02991 32 TDEFCRNTLCAPEVIEYINT---RMLFWACSVAKPEGYRVSQ----ALRERTYPFL 80 (116)
T ss_pred HHHHHHHHcCCHHHHHHHHc---CEEEEEEecCChHHHHHHH----HhCCCCCCEE
Confidence 589997 34455543 4544433333 35555443 4445578873
No 361
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.81 E-value=1.1e+02 Score=24.41 Aligned_cols=67 Identities=7% Similarity=-0.097 Sum_probs=46.5
Q ss_pred hhHHHHHHhhhc---CCCEEEEecC----CChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCC
Q 033975 34 HSVSAFVQNSIF---SNKIVIFSKS----YCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCE 100 (107)
Q Consensus 34 ~~~k~~v~~~i~---~~~Vvvfsks----~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s 100 (107)
++.++.++.+-. .+.+.++--. .--|=+..++..++.|+.++.++++.+-..+++.+.+.+++...+
T Consensus 17 ~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 90 (284)
T PRK14190 17 EQLKEEVVKLKEQGIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPR 90 (284)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 344555555421 2344444433 256667788889999999999999988788889999988877654
No 362
>PRK10670 hypothetical protein; Provisional
Probab=22.79 E-value=1.2e+02 Score=21.52 Aligned_cols=21 Identities=5% Similarity=-0.040 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCCEEEEccCC
Q 033975 62 RAKRIFADLNEQPFVVELDLR 82 (107)
Q Consensus 62 ~aK~lL~~lgv~~~vidID~~ 82 (107)
.+-++|++.+++|+.++++-+
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~ 23 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHD 23 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccC
Confidence 467899999999999666543
No 363
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.73 E-value=1.1e+02 Score=24.60 Aligned_cols=67 Identities=9% Similarity=-0.014 Sum_probs=47.6
Q ss_pred chhHHHHHHhhhc----CCCEEEEecC----CChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCC
Q 033975 33 DHSVSAFVQNSIF----SNKIVIFSKS----YCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLC 99 (107)
Q Consensus 33 ~~~~k~~v~~~i~----~~~Vvvfsks----~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~ 99 (107)
-++.++.++.+-. .+.+.++--. ..-|=+...+..++.|+.++.++++.+-+.+++.+.+.+++...
T Consensus 14 ~~~i~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 88 (295)
T PRK14174 14 KNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDP 88 (295)
T ss_pred HHHHHHHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3455566665532 2344444433 36677778888999999999999998878888888888887754
No 364
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=22.71 E-value=2.1e+02 Score=18.39 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=23.7
Q ss_pred HhhhcCCCEEEEecCC-ChhHHHHHHHHHhcCCC
Q 033975 41 QNSIFSNKIVIFSKSY-CPYCLRAKRIFADLNEQ 73 (107)
Q Consensus 41 ~~~i~~~~Vvvfsks~-CPyC~~aK~lL~~lgv~ 73 (107)
..+-++.+|++|...+ |.....+-..|..+|.+
T Consensus 59 ~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~ 92 (110)
T cd01521 59 AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP 92 (110)
T ss_pred hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe
Confidence 3334567899997653 66667777888888885
No 365
>PF11536 DUF3226: Protein of unknown function (DUF3226); InterPro: IPR024508 This family of proteins is functionally uncharacterised.; PDB: 2P62_B.
Probab=22.43 E-value=1.8e+02 Score=22.89 Aligned_cols=51 Identities=8% Similarity=-0.023 Sum_probs=33.1
Q ss_pred CCEEEEecCCC-hhHHHHHHHHHhcCCC-------CEEEEccCCCCchHhhhcccCCCC
Q 033975 47 NKIVIFSKSYC-PYCLRAKRIFADLNEQ-------PFVVELDLRVYSFGSGRPTHRPTN 97 (107)
Q Consensus 47 ~~Vvvfsks~C-PyC~~aK~lL~~lgv~-------~~vidID~~~d~~~i~~~L~~~tg 97 (107)
..++|+...+= ..=+..+.+|++..+- ..++|+|+++|..++.+...+..|
T Consensus 55 ~~laI~~~eGk~~i~~~L~~~l~am~~~~~~v~~IgVarDiDed~d~~~~~k~~~k~~g 113 (239)
T PF11536_consen 55 VYLAIIHSEGKSNIIRNLKNFLKAMELFEFSVESIGVARDIDEDEDAKNWAKSTGKLSG 113 (239)
T ss_dssp EEEEEE-S--TTTHHHHHHHHHHHHHCT---EEEEEEEEETTSSS-HHHHHHTT-TTS-
T ss_pred cEEEEEecCCcchHHHHHHHHHHHHHhhhcccceEEEEEecCcchhHHHHHHHHHHhcc
Confidence 35778877775 6667788888876641 247899999998888887776665
No 366
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.03 E-value=1.1e+02 Score=24.36 Aligned_cols=66 Identities=6% Similarity=-0.107 Sum_probs=46.9
Q ss_pred hhHHHHHHhhhc----CCCEEEEec----CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCC
Q 033975 34 HSVSAFVQNSIF----SNKIVIFSK----SYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLC 99 (107)
Q Consensus 34 ~~~k~~v~~~i~----~~~Vvvfsk----s~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~ 99 (107)
++.++.++.+.. .+.+.+..- ...-|=+..++.-++.|+.++.+++..+...+++.+.+.+++...
T Consensus 15 ~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 88 (285)
T PRK14191 15 KDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQ 88 (285)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345555665432 233443333 346777788888999999999999998888888999998887654
No 367
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=21.89 E-value=2.5e+02 Score=18.53 Aligned_cols=68 Identities=18% Similarity=0.112 Sum_probs=45.1
Q ss_pred ccchhHHHHHHhhhcCC--CEEEEecCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCC
Q 033975 31 EADHSVSAFVQNSIFSN--KIVIFSKSYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNL 98 (107)
Q Consensus 31 ~~~~~~k~~v~~~i~~~--~Vvvfsks~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~ 98 (107)
...++..+.+++++.+. .|++.+......+...-+-+-+....+-++.|-..+....+.+..++.-|.
T Consensus 27 ~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~IP~~~~~~~i~~~v~raIG~ 96 (100)
T PRK02228 27 PDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTLGGGGGSGGLREKIKRAIGV 96 (100)
T ss_pred CCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEECCCccchHHHHHHHHHhCc
Confidence 33467888889887544 577777777777765555444555677788885544446677777666554
No 368
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.83 E-value=1.1e+02 Score=24.51 Aligned_cols=45 Identities=11% Similarity=-0.031 Sum_probs=37.4
Q ss_pred CChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCC
Q 033975 56 YCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCE 100 (107)
Q Consensus 56 ~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s 100 (107)
..-|=+..++..++.|+.++.+++..+-..+++.+.+.+++...+
T Consensus 45 s~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 89 (297)
T PRK14167 45 SETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADED 89 (297)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 367777888899999999999999888777888888888877543
No 369
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=21.61 E-value=87 Score=20.17 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.0
Q ss_pred CChhHH-HHHHHHHhcCC
Q 033975 56 YCPYCL-RAKRIFADLNE 72 (107)
Q Consensus 56 ~CPyC~-~aK~lL~~lgv 72 (107)
=||-|+ .|++.+++.+|
T Consensus 17 PC~~Cr~HA~~ai~kNNi 34 (70)
T PF04805_consen 17 PCPECRIHAKEAIQKNNI 34 (70)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 399999 48999988775
No 370
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.50 E-value=25 Score=24.67 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=35.0
Q ss_pred hHHHHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCCC---EEEEccCCCCchHhhhccc
Q 033975 35 SVSAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQP---FVVELDLRVYSFGSGRPTH 93 (107)
Q Consensus 35 ~~k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lgv~~---~vidID~~~d~~~i~~~L~ 93 (107)
...-+--...+...+.|- ||.|.+.-++|.+...-. +-..+|.+-+|.|..|...
T Consensus 54 ~~VYfwIGmlStkav~V~----CP~C~K~TKmLGr~D~CM~C~~pLTLd~~legkef~~~yn 111 (114)
T PF11023_consen 54 TAVYFWIGMLSTKAVQVE----CPNCGKQTKMLGRVDACMHCKEPLTLDPSLEGKEFDEKYN 111 (114)
T ss_pred HHHHHHhhhhcccceeeE----CCCCCChHhhhchhhccCcCCCcCccCchhhcchhhHhhc
Confidence 334444444444433332 999999999998766322 4567788888888776544
No 371
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=21.27 E-value=2.1e+02 Score=17.42 Aligned_cols=36 Identities=3% Similarity=0.026 Sum_probs=26.3
Q ss_pred HHHHHhhhcCCCEEEEecCCChhHHHHHHHHHhcCCC
Q 033975 37 SAFVQNSIFSNKIVIFSKSYCPYCLRAKRIFADLNEQ 73 (107)
Q Consensus 37 k~~v~~~i~~~~Vvvfsks~CPyC~~aK~lL~~lgv~ 73 (107)
...+..+-++.+|++|.. .+.-+..+-..|.++|..
T Consensus 47 ~~~~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 47 DDWLGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 344455446778999888 677778888888888864
No 372
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=21.06 E-value=2.1e+02 Score=19.40 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=39.1
Q ss_pred HHhcCCCC-c-ccchhHHHHHHhhh-cCCCEEEEecC---CCh--hHHHHHHHHHhcCCCCEEEEccCC----CCchHhh
Q 033975 22 LLGNAPTA-T-EADHSVSAFVQNSI-FSNKIVIFSKS---YCP--YCLRAKRIFADLNEQPFVVELDLR----VYSFGSG 89 (107)
Q Consensus 22 ~~~~~~~~-~-~~~~~~k~~v~~~i-~~~~Vvvfsks---~CP--yC~~aK~lL~~lgv~~~vidID~~----~d~~~i~ 89 (107)
+++++|+- . ........+++.+. +..++.+|+.- |=+ ||..++++=+.++..-..++|+.. +|...++
T Consensus 54 iilgs~t~~~g~~p~~~~~fl~~l~~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~~~~~i~~~~~~~~d~~~~~ 133 (140)
T TIGR01754 54 VFLGTWTWERGRTPDEMKDFIAELGYKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSHPVLKIEQMPHGEQDGRAIY 133 (140)
T ss_pred EEEEcCeeCCCcCCHHHHHHHHHhcccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcCCceeEecCCcccccHHHHH
Confidence 45555542 2 23346788888765 44567788764 332 788888777766532223344332 3444444
Q ss_pred hcc
Q 033975 90 RPT 92 (107)
Q Consensus 90 ~~L 92 (107)
+.+
T Consensus 134 ~~~ 136 (140)
T TIGR01754 134 DWL 136 (140)
T ss_pred HHH
Confidence 443
No 373
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.01 E-value=1.3e+02 Score=24.02 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=45.5
Q ss_pred hhHHHHHHhhhc---CCCEEEEecCC----ChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCC
Q 033975 34 HSVSAFVQNSIF---SNKIVIFSKSY----CPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCE 100 (107)
Q Consensus 34 ~~~k~~v~~~i~---~~~Vvvfsks~----CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s 100 (107)
++.++.++.+-. .+++.+.--.. --|=+.-.+.-++.|+.++.++++.+...+++.+.+.+++...+
T Consensus 17 ~~~~~~v~~l~~~g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~ 90 (286)
T PRK14175 17 QGLQDQVEALKEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDS 90 (286)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 344555555432 23444443333 45666777888899999999999988888889898888876543
No 374
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=20.92 E-value=2.6e+02 Score=18.45 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=28.6
Q ss_pred hHHHHHHhhhcCCCEEEEecCCChhHH----HHHHHHHhcCCCCEEEEcc
Q 033975 35 SVSAFVQNSIFSNKIVIFSKSYCPYCL----RAKRIFADLNEQPFVVELD 80 (107)
Q Consensus 35 ~~k~~v~~~i~~~~Vvvfsks~CPyC~----~aK~lL~~lgv~~~vidID 80 (107)
.....++++....+|+++... ++|+. .+-..|.+...+..+|+++
T Consensus 75 ~~~~~l~~l~~~~~I~iW~~~-~~~dq~gl~~~l~~L~~~~~~I~~v~~t 123 (124)
T PF08874_consen 75 QELKRLEELPEDDPIVIWYGD-NAYDQLGLRYLLSLLKDKPNRIYVVNVT 123 (124)
T ss_pred HHHHHHHhCCCCCEEEEEeCC-CHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 344456777777778887554 77776 4455566666666777664
No 375
>TIGR00778 ahpD_dom alkylhydroperoxidase AhpD family core domain. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity.
Probab=20.90 E-value=1.2e+02 Score=16.74 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=13.6
Q ss_pred CCChhHHHHHHH-HHhcCCCC
Q 033975 55 SYCPYCLRAKRI-FADLNEQP 74 (107)
Q Consensus 55 s~CPyC~~aK~l-L~~lgv~~ 74 (107)
.+|.||...... ..+.|++.
T Consensus 19 ~~C~yc~~~H~~~a~~~G~~~ 39 (50)
T TIGR00778 19 NGCGYCLDAHTKLARKAGVTA 39 (50)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 469999987643 45567643
No 376
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.80 E-value=1.3e+02 Score=24.09 Aligned_cols=67 Identities=7% Similarity=-0.057 Sum_probs=46.8
Q ss_pred hhHHHHHHhhhcC----CCEEEEec----CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCC
Q 033975 34 HSVSAFVQNSIFS----NKIVIFSK----SYCPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCE 100 (107)
Q Consensus 34 ~~~k~~v~~~i~~----~~Vvvfsk----s~CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s 100 (107)
++.++.++.+-.. +.+.+.-- ...-|=+.-.+..++.|+.++.++++.+-..+++.+.+.+++...+
T Consensus 17 ~~lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~ 91 (285)
T PRK10792 17 SEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPT 91 (285)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 4455556654322 33333332 2366777888889999999999999888787889999988876544
No 377
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=20.76 E-value=1.7e+02 Score=23.26 Aligned_cols=38 Identities=0% Similarity=-0.100 Sum_probs=28.1
Q ss_pred ChhHHHHHHHHHhcCCCCEEEE-ccCCCCchHhhhcccC
Q 033975 57 CPYCLRAKRIFADLNEQPFVVE-LDLRVYSFGSGRPTHR 94 (107)
Q Consensus 57 CPyC~~aK~lL~~lgv~~~vid-ID~~~d~~~i~~~L~~ 94 (107)
.++..++++.|.+.++.+.+++ +..+++-+.+.+.+..
T Consensus 37 ~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~ 75 (370)
T cd08551 37 TGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAA 75 (370)
T ss_pred CccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHH
Confidence 5888899999998888887664 6666776666665544
No 378
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=20.69 E-value=2.6e+02 Score=18.27 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=33.0
Q ss_pred hhHHHHHHhhh----cCCCEEEEecCC-----ChhHHHHHHHHHhcCCCC--EEEEccCCCCchHhhh
Q 033975 34 HSVSAFVQNSI----FSNKIVIFSKSY-----CPYCLRAKRIFADLNEQP--FVVELDLRVYSFGSGR 90 (107)
Q Consensus 34 ~~~k~~v~~~i----~~~~Vvvfsks~-----CPyC~~aK~lL~~lgv~~--~vidID~~~d~~~i~~ 90 (107)
...+.+++.+. +..++.+|+.-+ |..-+..++.|.++|... .-+.++.+++.++.++
T Consensus 64 ~~~~~f~~~l~~~~~~gk~~~vfgt~g~~~~f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~ 131 (140)
T TIGR01753 64 DDFEPFFEELEDIDLGGKKVALFGSGDWGYEFCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDK 131 (140)
T ss_pred chHHHHHHHhhhCCCCCCEEEEEecCCCCchhhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHH
Confidence 46677766653 455688887643 333445667777777542 2345556666555443
No 379
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.43 E-value=1.3e+02 Score=23.98 Aligned_cols=67 Identities=10% Similarity=-0.076 Sum_probs=46.5
Q ss_pred hhHHHHHHhhhc----CCCEEEEecCC----ChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCC
Q 033975 34 HSVSAFVQNSIF----SNKIVIFSKSY----CPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCE 100 (107)
Q Consensus 34 ~~~k~~v~~~i~----~~~Vvvfsks~----CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s 100 (107)
++.++.++.+-. .+++.+..-.. --|=+.-++.-++.|+.++.++++.+-..+++.+.+.+++...+
T Consensus 16 ~~i~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~ 90 (296)
T PRK14188 16 ATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPA 90 (296)
T ss_pred HHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 445555655432 23444444332 45666777888999999999999988888889999988877543
No 380
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.25 E-value=1.3e+02 Score=24.11 Aligned_cols=66 Identities=5% Similarity=-0.088 Sum_probs=44.8
Q ss_pred hHHHHHHhhhc----CCCEEEEecCC----ChhHHHHHHHHHhcCCCCEEEEccCCCCchHhhhcccCCCCCCC
Q 033975 35 SVSAFVQNSIF----SNKIVIFSKSY----CPYCLRAKRIFADLNEQPFVVELDLRVYSFGSGRPTHRPTNLCE 100 (107)
Q Consensus 35 ~~k~~v~~~i~----~~~Vvvfsks~----CPyC~~aK~lL~~lgv~~~vidID~~~d~~~i~~~L~~~tg~~s 100 (107)
+.++.++.+-. .+++.++.... --|=+.-++..++.|+.++.++++.+-+.+++.+.+.+++...+
T Consensus 18 ~lk~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~ 91 (284)
T PRK14177 18 EIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPN 91 (284)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 34445555422 23444444433 55666777888999999999999888777888888888876543
Done!