AT4G18590 protein (Arabidopsis thaliana)

STRING 9.05

AT4G18590 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




confidence	evidence	actions	interactive	advanced	more	less	save

Your Input:
	AT4G18590	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Replication factor A protein 3 (InterPro-IPR013970), Nucleic acid-binding, OB-fold-like (InterPro-IPR016027); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G52630.2); Has 58 Blast hits to 58 proteins in 25 species- Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (106 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	RPA2	RPA2 (REPLICON PROTEIN A2); protein binding; Encodes a component of Replication Protein A. Comp [...] (279 aa)	•	•	0.956
	AT3G02920	replication protein-related; replication protein-related; FUNCTIONS IN- nucleic acid binding; I [...] (278 aa)		•	0.863
	AT5G45400	replication protein, putative; replication protein, putative; FUNCTIONS IN- DNA binding, zinc i [...] (853 aa)		•	0.788
	RPA70B	RPA70B (RPA70-KDA SUBUNIT B); DNA binding / nucleic acid binding; Encodes a homolog of Replicat [...] (604 aa)		•	0.720
	AT5G61000	replication protein, putative; replication protein, putative; FUNCTIONS IN- DNA binding, nuclei [...] (629 aa)		•	0.679
	DRM1	DRM1 (domains rearranged methylase 1); DNA (cytosine-5-)-methyltransferase; Encodes methyltrans [...] (624 aa)		•	0.679
	RPA1A	RPA1A (REPLICATION PROTEIN A 1A); DNA binding / nucleic acid binding; Encodes a homolog of Repl [...] (640 aa)		•	0.677
	DML1	DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein bi [...] (1393 aa)		•	0.506
	NRPD2A	NRPD2A; DNA binding / DNA-directed RNA polymerase; This gene encodes the second largest, cataly [...] (1172 aa)		•	0.409
	PIE1	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase/ nucleic [...] (2055 aa)		•	0.408

Views:

Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

required confidence (score):

interactors shown:

or custom value:

or custom limit:

additional (white) nodes

Server load: low (34%)

Permalink