BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033976
         (107 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
           Enzyme
 pdb|3Q75|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
           Complex With Fpt-Ii And Tkcvvm Peptide
 pdb|3Q78|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
           Complex With Fspp And Ddptasacniq Peptide
 pdb|3Q79|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
           Complex With Farnesyl-Ddptasacniq Product
 pdb|3Q7A|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
           Complex With Fpp And L-778,123
 pdb|3Q7F|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
           Complex With Fpp And Ethylenediamine Inhibitor 1
 pdb|3SFX|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
           Complex With Fpt-Ii And Tipifarnib
 pdb|3SFY|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
           Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
          Length = 520

 Score = 25.8 bits (55), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 35  GGVTGKSTDGHQLVVKGPQPGFPLT 59
           GG T  S + H L+   P P FPL+
Sbjct: 267 GGYTSCSLNSHFLLTSVPLPSFPLS 291


>pdb|4DNG|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From
           Bacillus Subtilis Subsp. Subtilis Str. 168
 pdb|4DNG|B Chain B, Crystal Structure Of Putative Aldehyde Dehydrogenase From
           Bacillus Subtilis Subsp. Subtilis Str. 168
          Length = 485

 Score = 25.4 bits (54), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 21  RRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQPGFPLTTFVEVIGIADTDRSIRAEIWN 80
           R+I   +++I+          TDG +L V+G + G  LT +V  +G  +  +  + E++ 
Sbjct: 333 RQIEKALEIIEQ-------AKTDGIELAVEGKRVGNVLTPYV-FVGADNNSKIAQTELFA 384

Query: 81  NFGNTFDTQSYNQLCQLAN 99
                    S  +   +AN
Sbjct: 385 PIATIIKAGSDQEAIDMAN 403


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,490,608
Number of Sequences: 62578
Number of extensions: 135693
Number of successful extensions: 263
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 7
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)