Query 033976
Match_columns 107
No_of_seqs 101 out of 186
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kdf_A Replication protein A 1 100.0 4E-43 1.4E-47 240.5 15.3 104 1-107 5-114 (121)
2 2pi2_E Replication protein A 1 100.0 1.8E-41 6.1E-46 237.8 15.3 102 5-107 28-135 (142)
3 4gop_A Putative uncharacterize 100.0 2E-42 6.8E-47 234.9 9.0 104 1-107 1-111 (114)
4 3kf6_B Protein TEN1; OB fold, 97.7 0.0027 9.2E-08 41.9 12.8 93 5-99 5-102 (105)
5 3kdf_D Replication protein A 3 95.7 0.066 2.3E-06 35.6 7.9 66 21-87 32-113 (132)
6 1j6q_A Cytochrome C maturation 95.3 0.34 1.2E-05 33.0 10.5 82 17-98 29-122 (136)
7 3mxn_B RECQ-mediated genome in 95.2 0.38 1.3E-05 33.4 10.4 76 22-98 60-146 (150)
8 3kf6_A Protein STN1; OB fold, 95.1 0.17 5.9E-06 35.2 8.6 80 20-99 47-144 (159)
9 4gop_B Putative uncharacterize 95.0 0.18 6.3E-06 33.6 8.3 66 21-87 37-118 (136)
10 3kf8_B Protein TEN1; OB fold; 94.8 0.35 1.2E-05 32.5 9.2 82 10-92 6-110 (123)
11 1n9w_A Aspartyl-tRNA synthetas 94.5 0.17 5.8E-06 40.1 8.1 72 12-83 5-86 (422)
12 3m4p_A Ehasnrs, asparaginyl-tR 94.3 0.35 1.2E-05 38.6 9.6 77 7-83 17-120 (456)
13 2kct_A Cytochrome C-type bioge 93.5 0.89 3.1E-05 29.0 9.4 62 18-79 6-81 (94)
14 1sr3_A APO-CCME; OB fold, beta 92.0 1.4 4.9E-05 29.9 8.6 72 17-88 25-107 (136)
15 3kf8_A Protein STN1; OB fold; 91.9 0.52 1.8E-05 34.6 6.7 79 21-99 86-204 (220)
16 1wyd_A Hypothetical aspartyl-t 91.6 0.62 2.1E-05 36.9 7.3 68 16-83 12-96 (429)
17 4ah6_A Aspartate--tRNA ligase, 91.5 1.1 3.8E-05 37.2 9.0 56 13-69 17-84 (617)
18 1c0a_A Aspartyl tRNA synthetas 91.5 0.75 2.6E-05 37.8 7.9 71 13-83 8-103 (585)
19 1nnx_A Protein YGIW; structura 91.4 1.2 4.2E-05 29.1 7.5 57 15-72 32-94 (109)
20 2pi2_A Replication protein A 3 90.6 1.5 5.1E-05 32.4 8.2 64 21-84 72-151 (270)
21 3nem_A Aspartyl-tRNA synthetas 90.1 1.6 5.6E-05 34.6 8.5 68 16-83 12-99 (438)
22 1e1o_A Lysyl-tRNA synthetase, 89.8 1.6 5.4E-05 35.3 8.3 64 20-83 64-146 (504)
23 4ex5_A Lysine--tRNA ligase; st 89.5 1.6 5.5E-05 35.6 8.2 64 20-83 86-167 (529)
24 1l0w_A Aspartyl-tRNA synthetas 89.5 1.2 4.1E-05 36.7 7.4 69 15-83 11-101 (580)
25 1x54_A Asparaginyl-tRNA synthe 89.0 0.86 3E-05 36.1 6.1 68 16-83 12-99 (434)
26 1eov_A ASPRS, aspartyl-tRNA sy 88.9 1.3 4.5E-05 35.6 7.2 76 8-83 22-128 (487)
27 2xgt_A Asparaginyl-tRNA synthe 88.7 1.6 5.6E-05 34.4 7.5 71 13-83 4-95 (435)
28 3a74_A Lysyl-tRNA synthetase; 88.5 0.96 3.3E-05 36.5 6.1 64 20-83 56-137 (493)
29 3i7f_A Aspartyl-tRNA synthetas 86.5 2.3 7.8E-05 34.9 7.3 76 7-83 48-151 (548)
30 3bju_A Lysyl-tRNA synthetase; 83.6 3.2 0.00011 33.7 6.9 65 19-83 54-139 (521)
31 2eqn_A Hypothetical protein LO 72.3 2.3 7.7E-05 27.4 2.3 49 22-70 24-76 (103)
32 2ftc_B Mitochondrial ribosomal 68.6 12 0.00041 25.3 5.4 52 19-70 64-124 (136)
33 1giy_D 50S ribosomal protein L 68.4 12 0.00039 26.5 5.5 52 19-70 77-137 (178)
34 1sqr_A 50S ribosomal protein L 64.3 15 0.00051 23.4 4.9 42 15-64 35-86 (95)
35 1ib8_A Conserved protein SP14. 61.7 11 0.00039 25.7 4.3 37 6-42 90-138 (164)
36 4eqp_A Thermonuclease; staphyl 57.3 18 0.00061 23.9 4.6 29 24-53 9-38 (143)
37 1y96_A Gemin6, SIP2, GEM-assoc 57.2 11 0.00039 23.5 3.3 27 10-36 7-41 (86)
38 3j21_c 50S ribosomal protein L 56.6 19 0.00065 22.6 4.3 42 15-64 35-86 (87)
39 2e70_A Transcription elongatio 56.5 30 0.001 20.8 5.5 36 16-51 17-61 (71)
40 1ah9_A IF1, initiation factor 53.1 27 0.00091 20.4 4.4 43 23-65 6-55 (71)
41 3bdl_A Staphylococcal nuclease 53.1 19 0.00066 29.0 4.9 35 19-53 19-54 (570)
42 1rl2_A Protein (ribosomal prot 46.6 10 0.00035 25.6 2.0 42 27-68 92-135 (137)
43 3kuv_A Fluoroacetyl coenzyme A 45.7 31 0.0011 22.9 4.3 39 8-46 70-111 (139)
44 3ic8_A Uncharacterized GST-lik 45.1 23 0.00078 25.5 3.9 31 24-54 271-303 (310)
45 2hvy_B GAR1, small nucleolar R 44.3 33 0.0011 22.0 4.1 47 20-70 5-57 (104)
46 2v3m_A NAF1; ribosomal protein 44.1 13 0.00043 24.9 2.1 51 20-70 27-83 (131)
47 1oqk_A Conserved protein MTH11 43.8 28 0.00094 21.9 3.6 43 9-51 5-60 (97)
48 2k50_A Replication factor A re 43.7 56 0.0019 20.2 6.7 50 19-68 15-83 (115)
49 3flo_A DNA polymerase alpha su 43.5 1.1E+02 0.0038 24.4 7.9 80 21-100 47-177 (460)
50 2dgy_A MGC11102 protein; EIF-1 43.4 46 0.0016 21.5 4.8 41 25-65 17-63 (111)
51 2oqk_A Putative translation in 42.4 39 0.0013 21.8 4.3 41 25-65 34-80 (117)
52 1jt8_A EIF-1A, probable transl 41.5 36 0.0012 21.7 3.9 31 22-52 19-50 (102)
53 3f7w_A Putative fructosamine-3 41.3 41 0.0014 23.7 4.7 42 13-54 7-49 (288)
54 2zhn_A Galectin-9; beta sandwi 38.7 44 0.0015 22.1 4.2 36 18-53 26-64 (148)
55 4a18_H RPL35A; ribosome, eukar 37.8 55 0.0019 21.4 4.4 42 15-64 48-106 (113)
56 3pr9_A FKBP-type peptidyl-prol 37.7 22 0.00074 24.1 2.6 54 9-69 90-150 (157)
57 3iz5_j 60S ribosomal protein L 37.0 21 0.00073 23.3 2.3 41 15-63 45-103 (111)
58 3e0e_A Replication protein A; 36.8 71 0.0024 19.4 5.2 49 20-69 11-77 (97)
59 3tee_A Flagella basal BODY P-r 35.4 60 0.0021 23.0 4.8 51 19-76 143-196 (219)
60 1d7q_A Translation initiation 35.2 66 0.0023 21.7 4.7 30 24-53 32-62 (143)
61 2ey4_C Small nucleolar RNP sim 34.7 26 0.00087 21.5 2.3 47 20-70 5-57 (82)
62 1kq1_A HFQ, HOST factor for Q 33.4 71 0.0024 19.3 4.2 27 22-49 29-55 (77)
63 3qoo_A Uncharacterized protein 32.9 80 0.0027 20.8 4.8 39 9-47 70-111 (138)
64 3zsj_A Galectin-3; sugar bindi 32.8 48 0.0016 21.6 3.6 35 18-53 15-49 (138)
65 1vq8_A 50S ribosomal protein L 32.6 23 0.00078 26.1 2.1 44 27-70 117-162 (240)
66 1mgq_A SM-like protein; LSM, R 32.1 39 0.0013 20.2 2.9 15 12-26 17-31 (83)
67 3nv1_A Galectin-9, galectin 9 31.6 72 0.0024 20.7 4.3 35 18-53 19-53 (138)
68 3v2d_D 50S ribosomal protein L 31.4 28 0.00095 26.2 2.4 44 27-70 153-198 (276)
69 2rcn_A Probable GTPase ENGC; Y 30.3 1.7E+02 0.0058 22.2 6.8 41 25-65 48-90 (358)
70 1i4k_A Putative snRNP SM-like 30.2 55 0.0019 19.0 3.3 15 12-26 6-20 (77)
71 2wkk_A Galectin-2; sugar-bindi 29.4 32 0.0011 23.1 2.3 36 18-53 18-54 (150)
72 3r8s_C 50S ribosomal protein L 28.9 22 0.00075 26.7 1.5 44 27-70 151-196 (271)
73 1h64_1 SnRNP SM-like protein; 28.2 63 0.0022 18.6 3.3 15 12-26 6-20 (75)
74 2cwz_A Thioesterase family pro 28.2 67 0.0023 20.8 3.7 33 8-40 64-97 (141)
75 3sb2_A Protein HFQ; SM-like, R 27.9 1.1E+02 0.0036 18.7 4.4 25 23-49 31-55 (79)
76 1vcb_B Protein (elongin C); tu 27.5 52 0.0018 20.8 3.0 66 29-99 11-78 (112)
77 2z1e_A Hydrogenase expression/ 27.2 98 0.0033 22.7 4.9 33 19-51 296-328 (338)
78 3bdl_A Staphylococcal nuclease 26.9 84 0.0029 25.2 4.7 32 20-53 206-239 (570)
79 2f5t_X Archaeal transcriptiona 26.6 83 0.0028 22.5 4.2 33 19-52 174-212 (233)
80 1aqt_A ATP synthase; hydrolase 26.1 1.4E+02 0.0048 19.5 5.4 52 43-99 46-102 (138)
81 3j21_B 50S ribosomal protein L 25.9 26 0.0009 25.8 1.4 44 27-70 119-164 (239)
82 3h43_A Proteasome-activating n 24.7 1.2E+02 0.0042 18.3 5.0 30 24-53 19-49 (85)
83 1vla_A Hydroperoxide resistanc 24.4 1.5E+02 0.0052 19.3 6.1 38 62-99 84-126 (150)
84 1th7_A SnRNP-2, small nuclear 24.0 67 0.0023 18.9 2.9 15 12-26 11-25 (81)
85 2yro_A Galectin-8; GAL-BIND le 23.8 1.6E+02 0.0056 19.4 5.4 36 18-54 28-65 (155)
86 1hv2_A Elongin C, ELC1; protei 23.8 68 0.0023 19.7 2.9 58 34-99 3-62 (99)
87 2kyw_A Adhesion exoprotein; st 23.3 76 0.0026 19.5 2.9 16 39-54 52-67 (87)
88 1d3b_B Protein (small nuclear 23.3 59 0.002 19.5 2.5 14 13-26 7-20 (91)
89 2wg5_A General control protein 22.6 1.5E+02 0.0052 18.6 4.5 30 24-53 38-68 (109)
90 3u28_C H/ACA ribonucleoprotein 22.4 1.1E+02 0.0036 20.0 3.7 47 21-69 25-76 (114)
91 1d3b_A Protein (small nuclear 22.4 88 0.003 18.2 3.1 14 12-25 7-20 (75)
92 3bw1_A SMX4 protein, U6 snRNA- 22.3 1E+02 0.0034 18.9 3.5 23 12-34 12-42 (96)
93 1qex_A Protein (bacteriophage 22.0 1.2E+02 0.0042 22.9 4.4 36 34-75 82-117 (288)
94 3iz5_B 60S ribosomal protein L 21.4 47 0.0016 24.8 2.0 44 27-70 124-171 (261)
95 3dui_A Beta-galactoside-bindin 21.2 1.1E+02 0.0038 19.7 3.8 40 13-53 9-49 (135)
96 1i8f_A Putative snRNP SM-like 21.0 1E+02 0.0035 18.1 3.3 15 12-26 13-27 (81)
97 1t9h_A YLOQ, probable GTPase E 20.5 1.9E+02 0.0064 21.4 5.3 40 26-65 12-60 (307)
98 1is3_A Congerin II; complex wi 20.2 1.1E+02 0.0039 19.7 3.6 35 18-53 12-47 (135)
No 1
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=100.00 E-value=4e-43 Score=240.51 Aligned_cols=104 Identities=19% Similarity=0.363 Sum_probs=99.0
Q ss_pred CCCCCCceeeehhhhhccCCCeEEEEEEEeec--cCCeEEEEeCCCCEEEEEccCC-CCCCCCEEEEEEEECCCCCEEEE
Q 033976 1 MDTSNPAVFVNGGLMRMYVGRRIRTVIQVIQS--DGGGVTGKSTDGHQLVVKGPQP-GFPLTTFVEVIGIADTDRSIRAE 77 (107)
Q Consensus 1 Md~~~~~pRVn~~~L~~~~Gk~VrlvGkV~~~--~g~~~~~~s~D~g~V~v~l~~~-~~~~~~~vEViG~V~~~~si~~~ 77 (107)
|| .|+||||++||++|+||+|||||||.++ +|++++++|+||++|+|+|++| ++++++||||||+|+++++|+++
T Consensus 5 m~--~p~pRVn~s~L~~fvgk~VrivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~p~~~~l~~~vEViG~V~~~~tI~~~ 82 (121)
T 3kdf_A 5 MD--LPRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVGRVTAKATILCT 82 (121)
T ss_dssp GG--SCCEEECGGGGGGGTTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSCCSSCCCSEEEEEEEECTTSCEEEE
T ss_pred cc--CCcceECHHHHHhhCCCeEEEEEEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEEEECCCCeEEEE
Confidence 55 5799999999999999999999999988 5899999999999999999998 57789999999999999999999
Q ss_pred EEEeCCCC---CCHHHHHHHHHHHhccccCCCC
Q 033976 78 IWNNFGNT---FDTQSYNQLCQLANGEFKHLFI 107 (107)
Q Consensus 78 ~~~~~g~~---fD~~~yn~lv~l~~~~~~~lF~ 107 (107)
++++||++ ||+++||++|+++| +||+|||
T Consensus 83 ~~~~fg~~~~~fD~~~yn~lv~l~~-~~~~lf~ 114 (121)
T 3kdf_A 83 SYVQFKEDSHPFDLGLYNEAVKIIH-DFPQFYP 114 (121)
T ss_dssp EEEECCCSSSCCCHHHHHHHHHHHH-HCGGGSC
T ss_pred EEEecCCCCcccCHHHHHHHHHHHh-cCCcccc
Confidence 99999999 99999999999999 7999997
No 2
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=100.00 E-value=1.8e-41 Score=237.85 Aligned_cols=102 Identities=18% Similarity=0.341 Sum_probs=99.1
Q ss_pred CCceeeehhhhhccCCCeEEEEEEEeec--cCCeEEEEeCCCCEEEEEccCC-CCCCCCEEEEEEEECCCCCEEEEEEEe
Q 033976 5 NPAVFVNGGLMRMYVGRRIRTVIQVIQS--DGGGVTGKSTDGHQLVVKGPQP-GFPLTTFVEVIGIADTDRSIRAEIWNN 81 (107)
Q Consensus 5 ~~~pRVn~~~L~~~~Gk~VrlvGkV~~~--~g~~~~~~s~D~g~V~v~l~~~-~~~~~~~vEViG~V~~~~si~~~~~~~ 81 (107)
.|+||||+++|++|+||+|||||||+++ +|++++++|+||++|+|.|++| ++++++||||||+|+++++|+++++++
T Consensus 28 ~~~pRVN~s~L~~fvGk~VriVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~~pL~~~~~~~VEViG~V~~~~tI~~~~~~~ 107 (142)
T 2pi2_E 28 LPRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVGRVTAKATILCTSYVQ 107 (142)
T ss_dssp SCCEEECGGGGGGSTTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSCCSSCCCSEEEEEEEECTTSCEEEEEEEE
T ss_pred CCcceECHHHHHhhCCCEEEEEEEEeEEcCCCCEEEEEeCCCcEEEEEeCCCCCccCCCEEEEEEEECCCCcEEEEEEEe
Confidence 6799999999999999999999999999 9999999999999999999988 788999999999999999999999999
Q ss_pred CCCC---CCHHHHHHHHHHHhccccCCCC
Q 033976 82 FGNT---FDTQSYNQLCQLANGEFKHLFI 107 (107)
Q Consensus 82 ~g~~---fD~~~yn~lv~l~~~~~~~lF~ 107 (107)
||++ ||+++||++|+++| +||+|||
T Consensus 108 fGd~~~~fD~~~yn~lv~l~~-~f~~lF~ 135 (142)
T 2pi2_E 108 FKEDSHPFDLGLYNEAVKIIH-DFPQFYP 135 (142)
T ss_dssp CCCSSSCCCHHHHHHHHHHHH-HCGGGSC
T ss_pred cCCCccccCHHHHHHHHHHHH-hCccceE
Confidence 9998 99999999999999 9999996
No 3
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=100.00 E-value=2e-42 Score=234.88 Aligned_cols=104 Identities=24% Similarity=0.388 Sum_probs=95.0
Q ss_pred CCCCCCceeeehhhhhccCCCeEEEEEEEeeccCCeEEEEeCCCCEEEEEccCCC-CCCCCEEEEEEEECCC------CC
Q 033976 1 MDTSNPAVFVNGGLMRMYVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQPG-FPLTTFVEVIGIADTD------RS 73 (107)
Q Consensus 1 Md~~~~~pRVn~~~L~~~~Gk~VrlvGkV~~~~g~~~~~~s~D~g~V~v~l~~~~-~~~~~~vEViG~V~~~------~s 73 (107)
|| .|+||||++||++|+||+|||||||.+++|++++++|+||++|+|+|++|. ...++||||||+|+++ .+
T Consensus 1 m~--~~tpRVn~~~L~~~~g~~VrivGkV~~~~g~~~~l~s~d~~~Vtv~l~~~~~~~~~~~vEViG~V~~~~~~~~~~~ 78 (114)
T 4gop_A 1 ME--KPTPLINSSMLGQYVGQTVRIVGKVHKVTGNTLLMQTSDLGNVEIAMTPDSDVSSSTFVEVTGKVSDAGSSFQANQ 78 (114)
T ss_dssp CC--CCCCEECTTTGGGGTTSEEEEEEEEEEEETTEEEEECTTSCEEEEECCSSCCGGGCSEEEEEEEECTTSSEEEEEE
T ss_pred CC--CCCceECHHHHHhhCCCeEEEEEEEeeeCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEEEEcCCCCcccCCe
Confidence 66 569999999999999999999999999999999999999999999999884 4469999999999998 99
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhccccCCCC
Q 033976 74 IRAEIWNNFGNTFDTQSYNQLCQLANGEFKHLFI 107 (107)
Q Consensus 74 i~~~~~~~~g~~fD~~~yn~lv~l~~~~~~~lF~ 107 (107)
|+++++++||++||+++||++|+++| +||+|||
T Consensus 79 I~~~~~~~~g~~~D~~~yn~lv~l~~-~f~~lF~ 111 (114)
T 4gop_A 79 IREFTTVDCGHDVDLTLVENVVQISA-AFPNLFS 111 (114)
T ss_dssp EEECSCCC----CCHHHHHHHHHHHH-HCHHHHC
T ss_pred EEEEEEEeCCCccCHHHHHHHHHHHh-cCchhcc
Confidence 99999999999999999999999999 7999997
No 4
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=97.67 E-value=0.0027 Score=41.86 Aligned_cols=93 Identities=11% Similarity=0.139 Sum_probs=71.3
Q ss_pred CCceeeehhhhhcc-CCCeEEEEEEEeeccCCeEEEEeCCCCEEEEEccC--CC--CCCCCEEEEEEEECCCCCEEEEEE
Q 033976 5 NPAVFVNGGLMRMY-VGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQ--PG--FPLTTFVEVIGIADTDRSIRAEIW 79 (107)
Q Consensus 5 ~~~pRVn~~~L~~~-~Gk~VrlvGkV~~~~g~~~~~~s~D~g~V~v~l~~--~~--~~~~~~vEViG~V~~~~si~~~~~ 79 (107)
.|+-++--+.|+.+ .|.+||++|=|.+.+...++++++ +-.|.|..+- ++ ...+.|+-|+|-+..+..+++.-.
T Consensus 5 ~ps~L~~Ls~lp~~~~G~KVRFLGCV~sY~tg~L~Le~~-~~~v~VDV~lvL~~l~~~vGeWvNVvGYir~~v~VqAl~l 83 (105)
T 3kf6_B 5 DSAKLIFINQINDCKDGQKLRFLGCVQSYKNGILRLIDG-SSSVTCDVTVVLPDVSIQKHEWLNIVGRKRQDGIVDVLLI 83 (105)
T ss_dssp SCCEECCGGGGGGSCTTCEEEEEEEEEEEETTEEEEEET-TEEEEEECTTSCCSSCCCTTCEEEEEEEEEETTEEEEEEE
T ss_pred CcceEeehhhccCCCCCCEEEEEEEeeeeccEEEEEccC-CcEEEEEHHHhhchheeecccEEEEEEEEecCcEEEEEEE
Confidence 46778888889887 699999999999998778888843 3456654433 22 334999999999998766666655
Q ss_pred EeCCCCCCHHHHHHHHHHHh
Q 033976 80 NNFGNTFDTQSYNQLCQLAN 99 (107)
Q Consensus 80 ~~~g~~fD~~~yn~lv~l~~ 99 (107)
-. -..+|+..|++.++-.+
T Consensus 84 ws-AG~idl~~Ye~~l~~r~ 102 (105)
T 3kf6_B 84 RS-AVGINLPRYRQMVSERQ 102 (105)
T ss_dssp EE-CTTCCHHHHHHHHHHHH
T ss_pred ee-cCCcCHHHHHHHHHHHh
Confidence 55 35799999999998776
No 5
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=95.72 E-value=0.066 Score=35.61 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=44.4
Q ss_pred CeEEEEEEEeecc--CCeEEEEeCCC-C-EEEEEccCC-C--------CCCCCEEEEEEEEC---CCCCEEEEEEEeCCC
Q 033976 21 RRIRTVIQVIQSD--GGGVTGKSTDG-H-QLVVKGPQP-G--------FPLTTFVEVIGIAD---TDRSIRAEIWNNFGN 84 (107)
Q Consensus 21 k~VrlvGkV~~~~--g~~~~~~s~D~-g-~V~v~l~~~-~--------~~~~~~vEViG~V~---~~~si~~~~~~~~g~ 84 (107)
..|++||.|.+.+ .....++..|+ | .|.++.=.+ + ...+.||.|.|++. +...|.+..+....|
T Consensus 32 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLED 111 (132)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETTEEEEEEEEEEECSS
T ss_pred EEEEEEEEEEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECCEEEEEEEEEEEcCC
Confidence 4689999999763 34455555555 5 788876332 1 23499999999997 345577777777644
Q ss_pred CCC
Q 033976 85 TFD 87 (107)
Q Consensus 85 ~fD 87 (107)
++
T Consensus 112 -~N 113 (132)
T 3kdf_D 112 -MN 113 (132)
T ss_dssp -TH
T ss_pred -cc
Confidence 44
No 6
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=95.33 E-value=0.34 Score=33.02 Aligned_cols=82 Identities=16% Similarity=0.098 Sum_probs=49.0
Q ss_pred ccCCCeEEEEEEEe--ec----cCCeEEEEeCC--CCEEEEEccCC--C-CCCCCEEEEEEEECCCCCEEEEEE-EeCCC
Q 033976 17 MYVGRRIRTVIQVI--QS----DGGGVTGKSTD--GHQLVVKGPQP--G-FPLTTFVEVIGIADTDRSIRAEIW-NNFGN 84 (107)
Q Consensus 17 ~~~Gk~VrlvGkV~--~~----~g~~~~~~s~D--~g~V~v~l~~~--~-~~~~~~vEViG~V~~~~si~~~~~-~~~g~ 84 (107)
...|+.+|+-|.|. ++ ++..+...-+| +..|.|..... + .-.+.-|=+.|+..+++.+.+... .-..+
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLaKhde 108 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLPDLFREGQGIVAQGVLGEDGKLAATEVLAKHDE 108 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSSCEEEEEECTTCCCEEEEECSCCTTSCCSSSEEEEEEEECSTTSEEEEEEECCC--
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCCEEEEEEEcCCCCEEEEEECCCCCccccCCCeEEEEEEECCCCeEEEEEEEecCCC
Confidence 47899999999998 44 35555555556 88899987553 2 223788889999998899888876 44455
Q ss_pred CCCHHHHHHHHHHH
Q 033976 85 TFDTQSYNQLCQLA 98 (107)
Q Consensus 85 ~fD~~~yn~lv~l~ 98 (107)
++-.....+.++-.
T Consensus 109 kY~p~eva~al~~~ 122 (136)
T 1j6q_A 109 NYMPPEVAEAMGQK 122 (136)
T ss_dssp --------------
T ss_pred CCCCHHHHHHHHHh
Confidence 55443333444433
No 7
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=95.19 E-value=0.38 Score=33.38 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=57.2
Q ss_pred eEEEEEEEeeccCCeEEEEeCCCCEEEEEccCC---CC---CCCCEEEEEEEEC---CCCCEEEEEEEeCCCCCCHHH--
Q 033976 22 RIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQP---GF---PLTTFVEVIGIAD---TDRSIRAEIWNNFGNTFDTQS-- 90 (107)
Q Consensus 22 ~VrlvGkV~~~~g~~~~~~s~D~g~V~v~l~~~---~~---~~~~~vEViG~V~---~~~si~~~~~~~~g~~fD~~~-- 90 (107)
.|-+=|.|.+.+++.+.+...- |.++|..... .. ..+.||-|+|.+. +.-.|++...+||.++-|-+.
T Consensus 60 ~VWmQG~VV~~~~g~~~LdDgT-G~~~v~g~~~vp~g~p~l~~G~YVMV~G~v~~~s~eP~i~AvKm~DLS~~p~~E~mW 138 (150)
T 3mxn_B 60 AVWMQGRVVMADRGEARLRDPS-GDFSVRGLERVPRGRPCLVPGKYVMVMGVVQACSPEPCLQAVKMTDLSDNPIHESMW 138 (150)
T ss_dssp EEEEEEEEEEEETTEEEEEETT-EEEEEECGGGSCCCSCCCSTTCEEEEEEEEEECSSSCEEEEEEEEECCSCHHHHHHH
T ss_pred EEEEEeEEEEeCCCeEEEECCC-ceEEEeeccccCCCCcccCCCCEEEEEEEEEecCCCceEEEEEeeeCCCCcchHHHH
Confidence 4778899999999999888764 4677755332 11 3699999999996 566799999999999877766
Q ss_pred HHHHHHHH
Q 033976 91 YNQLCQLA 98 (107)
Q Consensus 91 yn~lv~l~ 98 (107)
|-|++++-
T Consensus 139 ~lEV~el~ 146 (150)
T 3mxn_B 139 ELEVEDLH 146 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555543
No 8
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=95.09 E-value=0.17 Score=35.17 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=53.9
Q ss_pred CCeEEEEEEEeeccC--C--eEEEEeCCCCEEEEEccCC----------CCCCCCEEEEEEEEC---CCCCEEEEEEEeC
Q 033976 20 GRRIRTVIQVIQSDG--G--GVTGKSTDGHQLVVKGPQP----------GFPLTTFVEVIGIAD---TDRSIRAEIWNNF 82 (107)
Q Consensus 20 Gk~VrlvGkV~~~~g--~--~~~~~s~D~g~V~v~l~~~----------~~~~~~~vEViG~V~---~~~si~~~~~~~~ 82 (107)
=+.|+|+|.|.+.+- . .++++.+-|..|.|..-.+ ....+.+|+|.|.+. +...|.++.+..+
T Consensus 47 I~~V~IvGiVv~~~~~~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~fr~~rqI~~~~i~~v 126 (159)
T 3kf6_A 47 IRWIQIVGYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFRSEVELIAQSFEEL 126 (159)
T ss_dssp ECEEEEEEEEEEEEEETTEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECSSSSCEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEEeCCEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEeeCCEEEEEEEEEEEC
Confidence 367999999997642 2 3445444444577654322 134699999999996 4777999999998
Q ss_pred CC-CCCHHHHHHHHHHHh
Q 033976 83 GN-TFDTQSYNQLCQLAN 99 (107)
Q Consensus 83 g~-~fD~~~yn~lv~l~~ 99 (107)
.| +-.+.-+.+..++..
T Consensus 127 ~d~n~Ev~~W~~~~r~~~ 144 (159)
T 3kf6_A 127 RDPNDEWKAWQKRMRYKK 144 (159)
T ss_dssp CSTHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 85 555555666665543
No 9
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=95.02 E-value=0.18 Score=33.57 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=43.0
Q ss_pred CeEEEEEEEeecc--CCeEEEEeCCC-CEEEEEccCC-C---------CCCCCEEEEEEEECC---CCCEEEEEEEeCCC
Q 033976 21 RRIRTVIQVIQSD--GGGVTGKSTDG-HQLVVKGPQP-G---------FPLTTFVEVIGIADT---DRSIRAEIWNNFGN 84 (107)
Q Consensus 21 k~VrlvGkV~~~~--g~~~~~~s~D~-g~V~v~l~~~-~---------~~~~~~vEViG~V~~---~~si~~~~~~~~g~ 84 (107)
..|++||+|.+.+ .....+...|+ |.|.+++=.+ + ...+.||.|.|++.. ...|.+..+....|
T Consensus 37 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~~qi~~~~ir~v~d 116 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNRRSISSGHMRPVID 116 (136)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTEEEEEESEEEECSS
T ss_pred EEEEEEEEEEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCEEEEEEEEEEECCC
Confidence 5689999999763 33444444454 6888865332 1 234999999999973 44577766666643
Q ss_pred CCC
Q 033976 85 TFD 87 (107)
Q Consensus 85 ~fD 87 (107)
+|
T Consensus 117 -~N 118 (136)
T 4gop_B 117 -YN 118 (136)
T ss_dssp -HH
T ss_pred -cc
Confidence 44
No 10
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=94.83 E-value=0.35 Score=32.55 Aligned_cols=82 Identities=15% Similarity=0.006 Sum_probs=59.5
Q ss_pred eehhhhhc-------cCCCeEEEEEEEeeccCCeEEEE--------eCCCCEEEEEccCC-C------CCCCCEEEEEEE
Q 033976 10 VNGGLMRM-------YVGRRIRTVIQVIQSDGGGVTGK--------STDGHQLVVKGPQP-G------FPLTTFVEVIGI 67 (107)
Q Consensus 10 Vn~~~L~~-------~~Gk~VrlvGkV~~~~g~~~~~~--------s~D~g~V~v~l~~~-~------~~~~~~vEViG~ 67 (107)
++++.|++ ..-.+||++|.|.+.+..++++. .+++..+.|....- . ...+.||.|+|-
T Consensus 6 l~P~~Ls~~FP~aS~s~p~kVR~L~QVisYd~~sa~L~l~~~p~~p~ss~~tv~VdI~~vL~~i~~~~~~vG~~VNI~Gy 85 (123)
T 3kf8_B 6 LIPSNIPQEFPEASISNPERLRILAQVKDFIPHESTIVIDKVPTITSEQSTYINICIFNLLEACSSRVLVPGTLVNIDAF 85 (123)
T ss_dssp SCGGGHHHHCTTCBTTBCEEEEEEEEEEEEEGGGTEEEEECCGGGCCSCCCCEEEECTTTTTTSCGGGGSTTCEEEEEEE
T ss_pred EChHHhhhhCccccccCCceEEEEEEEEEEcCCCcEEEEEecCCCCCCCCeEEEEEHHHHHhhcCccccccceEEEEEEE
Confidence 45555644 24679999999999887665443 23567788876542 1 234999999999
Q ss_pred ECCCCCEEEEEEEeCC-CCCCHHHHH
Q 033976 68 ADTDRSIRAEIWNNFG-NTFDTQSYN 92 (107)
Q Consensus 68 V~~~~si~~~~~~~~g-~~fD~~~yn 92 (107)
.++ .+|.+..+..+. -+|-++...
T Consensus 86 ynG-e~i~~i~i~~vNgs~~t~eni~ 110 (123)
T 3kf8_B 86 YDG-ESINPVDIYEVNGANFTMENIQ 110 (123)
T ss_dssp ECS-SCEEEEEEEECCGGGCCHHHHH
T ss_pred ecC-ccccEEEEEeecccceeHHHHH
Confidence 976 789999998885 689888754
No 11
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=94.47 E-value=0.17 Score=40.08 Aligned_cols=72 Identities=13% Similarity=-0.005 Sum_probs=49.7
Q ss_pred hhhhhccCCCeEEEEEEEeec--cCCeEEEEeCCC-CEEEEEccCCCCC-CCCEEEEEEEECC------CCCEEEEEEEe
Q 033976 12 GGLMRMYVGRRIRTVIQVIQS--DGGGVTGKSTDG-HQLVVKGPQPGFP-LTTFVEVIGIADT------DRSIRAEIWNN 81 (107)
Q Consensus 12 ~~~L~~~~Gk~VrlvGkV~~~--~g~~~~~~s~D~-g~V~v~l~~~~~~-~~~~vEViG~V~~------~~si~~~~~~~ 81 (107)
...|.++.|++|++.|+|.+. .|+..-+..-|+ |.|+|.++..... .+..|+|.|+|.. +..|.+.++.-
T Consensus 5 ~~~l~~~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~l~~~~~~v~v~G~v~~~~~~~~~~el~~~~~~v 84 (422)
T 1n9w_A 5 VRDLKAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEV 84 (422)
T ss_dssp GGGGGGCTTSEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEESCCCCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEE
T ss_pred HHHHHhcCCCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEEccccCCCCCEEEEEEEEEecCCCCccEEEEEeEEEE
Confidence 344557899999999999965 355433443343 6688877543456 7899999999952 34577777665
Q ss_pred CC
Q 033976 82 FG 83 (107)
Q Consensus 82 ~g 83 (107)
++
T Consensus 85 l~ 86 (422)
T 1n9w_A 85 LS 86 (422)
T ss_dssp EE
T ss_pred ec
Confidence 55
No 12
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=94.27 E-value=0.35 Score=38.64 Aligned_cols=77 Identities=9% Similarity=-0.018 Sum_probs=53.5
Q ss_pred ceeeehhhhhccCCCeEEEEEEEeecc--CC-eEEEEeCC-CCEEEEEccCCC---------CCCCCEEEEEEEEC----
Q 033976 7 AVFVNGGLMRMYVGRRIRTVIQVIQSD--GG-GVTGKSTD-GHQLVVKGPQPG---------FPLTTFVEVIGIAD---- 69 (107)
Q Consensus 7 ~pRVn~~~L~~~~Gk~VrlvGkV~~~~--g~-~~~~~s~D-~g~V~v~l~~~~---------~~~~~~vEViG~V~---- 69 (107)
..|+.-+.|.++.|++|++-|+|.+.. |+ ..-+..-| .|.|+|.++... ...+..|+|.|+|.
T Consensus 17 ~~~~~i~~~~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ 96 (456)
T 3m4p_A 17 PIVCNIRDAAGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAG 96 (456)
T ss_dssp CCCEECCSTTCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCS
T ss_pred ceEEEhhhhhhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCC
Confidence 357777888999999999999999663 32 33333333 357888776521 24589999999995
Q ss_pred ----------CCCCEEEEEEEeCC
Q 033976 70 ----------TDRSIRAEIWNNFG 83 (107)
Q Consensus 70 ----------~~~si~~~~~~~~g 83 (107)
++..|.+..+.-++
T Consensus 97 ~~~~~~~~t~g~~El~~~~i~vl~ 120 (456)
T 3m4p_A 97 KNHPPEIADILNLEMQVTEWKVIG 120 (456)
T ss_dssp SSCCCSCTTBCSSEEEEEEEEEEE
T ss_pred cccCcccCCCCcEEEEEeEEEEEe
Confidence 23467777776555
No 13
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=93.50 E-value=0.89 Score=29.03 Aligned_cols=62 Identities=18% Similarity=0.078 Sum_probs=45.1
Q ss_pred cCCCeEEEEEEEe--ec----cCCeEEEEeCCC----CEEEEEccC--CC-CCCCCEEEEEEEECC-CCCEEEEEE
Q 033976 18 YVGRRIRTVIQVI--QS----DGGGVTGKSTDG----HQLVVKGPQ--PG-FPLTTFVEVIGIADT-DRSIRAEIW 79 (107)
Q Consensus 18 ~~Gk~VrlvGkV~--~~----~g~~~~~~s~D~----g~V~v~l~~--~~-~~~~~~vEViG~V~~-~~si~~~~~ 79 (107)
-.||++|+-|.|. |+ ++..+...-+|+ .+|.|...- |+ .-.+.-|=+.|+..+ ++.+.+...
T Consensus 6 ~~~~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~~~v~V~Y~GilPDlFrEGqgVV~~G~l~~~~g~F~A~ev 81 (94)
T 2kct_A 6 DKLHTVRLFGTVAADGLTMLDGAPGVRFRLEDKDNTSKTVWVLYKGAVPDTFKPGVEVIIEGGLAPGEDTFKARTL 81 (94)
T ss_dssp CTTCCEEEEEEECSTTCEECTTSSEEEEEEECSSCTTCEEEEEEESCCCTTCCTTCEEEEEEEECTTCSEEEEEEE
T ss_pred CCCCeEEEeeEEeCCeEEecCCCCEEEEEEEcCCCCCcEEEEEECCCCCccccCCCeEEEEEEEeCCCCEEEEeEE
Confidence 3699999999998 33 455666666664 888887654 32 223778888999987 888887765
No 14
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=91.99 E-value=1.4 Score=29.93 Aligned_cols=72 Identities=21% Similarity=0.091 Sum_probs=48.2
Q ss_pred ccCCCeEEEEEEEe--ec----cCCeEEEEeCC-CCEEEEEccCC--C-CCCCCEEEEEEEECCCCCEEEEEE-EeCCCC
Q 033976 17 MYVGRRIRTVIQVI--QS----DGGGVTGKSTD-GHQLVVKGPQP--G-FPLTTFVEVIGIADTDRSIRAEIW-NNFGNT 85 (107)
Q Consensus 17 ~~~Gk~VrlvGkV~--~~----~g~~~~~~s~D-~g~V~v~l~~~--~-~~~~~~vEViG~V~~~~si~~~~~-~~~g~~ 85 (107)
...|+.+|+-|.|. ++ ++..+...-+| +..|.|..... + .-.+.-|=++|+..+++.+.+... .-..++
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLAKhdek 104 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELEKGNHILAKEVLAKHDEN 104 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEEEEECSSCEEEEEEESCCCTTCCTTSEEEEEEEECSSSEEEESSCBCCSCCC
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEEEEEeCCcEEEEEECCCCCccccCCCeEEEEEEECCCCeEEEEEEEecCCCC
Confidence 56899999999999 44 34455555445 56788876543 2 223788889999988887776654 334444
Q ss_pred CCH
Q 033976 86 FDT 88 (107)
Q Consensus 86 fD~ 88 (107)
+-.
T Consensus 105 Ymp 107 (136)
T 1sr3_A 105 YTP 107 (136)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 15
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=91.92 E-value=0.52 Score=34.56 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=53.4
Q ss_pred CeEEEEEEEeecc---C---------CeEEEEeCCCC--EEEEEccCC-----C-----CCCCCEEEEEEEECC------
Q 033976 21 RRIRTVIQVIQSD---G---------GGVTGKSTDGH--QLVVKGPQP-----G-----FPLTTFVEVIGIADT------ 70 (107)
Q Consensus 21 k~VrlvGkV~~~~---g---------~~~~~~s~D~g--~V~v~l~~~-----~-----~~~~~~vEViG~V~~------ 70 (107)
|.|||+|+|...+ . -.+++..+.|. .+.|+++.+ . ...+..|||.|.++.
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~~~~ 165 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSIN 165 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCSTT
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEeeccccc
Confidence 7899999999552 1 23566655555 677777532 1 224889999999974
Q ss_pred -----CCCEEEEEEEeCCCC-----CCHHHHHHHHHHHh
Q 033976 71 -----DRSIRAEIWNNFGNT-----FDTQSYNQLCQLAN 99 (107)
Q Consensus 71 -----~~si~~~~~~~~g~~-----fD~~~yn~lv~l~~ 99 (107)
...|.++...-++.. .-++.+++.+++-+
T Consensus 166 ~~~~~~rei~ve~i~vl~~~~~dl~~Ei~~W~~~~~fR~ 204 (220)
T 3kf8_A 166 VSKKPDRELKVSKITVLSHRPDGLHFEFEQWKKRMEFRK 204 (220)
T ss_dssp TTSCCCEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHHH
T ss_pred cccccceEEEEEEEEEeccCCCcHHHHHHHHHHHHHHHH
Confidence 356888888888754 33455777766654
No 16
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=91.56 E-value=0.62 Score=36.89 Aligned_cols=68 Identities=18% Similarity=0.053 Sum_probs=46.0
Q ss_pred hccCCCeEEEEEEEeec--cCCeEEEEeCCC-CEEEEEccCCC--------CCCCCEEEEEEEECC------CCCEEEEE
Q 033976 16 RMYVGRRIRTVIQVIQS--DGGGVTGKSTDG-HQLVVKGPQPG--------FPLTTFVEVIGIADT------DRSIRAEI 78 (107)
Q Consensus 16 ~~~~Gk~VrlvGkV~~~--~g~~~~~~s~D~-g~V~v~l~~~~--------~~~~~~vEViG~V~~------~~si~~~~ 78 (107)
.++.|+.|++-|+|.+. .|+..-+..-|+ |.++|.++... ...+..|+|.|+|.. +.+|.+..
T Consensus 12 ~~~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~ 91 (429)
T 1wyd_A 12 PEYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVKADKRAPRGIELHAEE 91 (429)
T ss_dssp GGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSSGGGEEEEEEE
T ss_pred HHhCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCChHHHHHHHhCCCCCEEEEEEEEEecCCCCccEEEEEeE
Confidence 57899999999999955 455544444343 66888775431 245899999999952 34466666
Q ss_pred EEeCC
Q 033976 79 WNNFG 83 (107)
Q Consensus 79 ~~~~g 83 (107)
+.-++
T Consensus 92 ~~vl~ 96 (429)
T 1wyd_A 92 ITLLS 96 (429)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 54444
No 17
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=91.52 E-value=1.1 Score=37.25 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=40.9
Q ss_pred hhhhccCCCeEEEEEEEeeccCCeE-EEEeCCCCEEEEEccCCC-----------CCCCCEEEEEEEEC
Q 033976 13 GLMRMYVGRRIRTVIQVIQSDGGGV-TGKSTDGHQLVVKGPQPG-----------FPLTTFVEVIGIAD 69 (107)
Q Consensus 13 ~~L~~~~Gk~VrlvGkV~~~~g~~~-~~~s~D~g~V~v~l~~~~-----------~~~~~~vEViG~V~ 69 (107)
+.-..+.|++|++.|+|.+.....+ .++.. .|.++|.++.+. ...+..|.|.|+|.
T Consensus 17 ~l~~~~~g~~V~l~GwV~~~R~~~Fi~LrD~-~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~ 84 (617)
T 4ah6_A 17 ELRSSHLGQEVTLCGWIQYRRQNTFLVLRDF-DGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVI 84 (617)
T ss_dssp GCCGGGTTCEEEEEEEECCCCTTTEEEEECS-SCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEE
T ss_pred HhHHHhCCCEEEEEEEeeeecCeEEEEEEeC-CcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEE
Confidence 3446789999999999997755454 34433 478999886542 23588999999994
No 18
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=91.48 E-value=0.75 Score=37.84 Aligned_cols=71 Identities=14% Similarity=0.010 Sum_probs=46.8
Q ss_pred hhhhccCCCeEEEEEEEeec--cCCeEEEEeCCC-CEEEEEccCC---------CCCCCCEEEEEEEECC----------
Q 033976 13 GLMRMYVGRRIRTVIQVIQS--DGGGVTGKSTDG-HQLVVKGPQP---------GFPLTTFVEVIGIADT---------- 70 (107)
Q Consensus 13 ~~L~~~~Gk~VrlvGkV~~~--~g~~~~~~s~D~-g~V~v~l~~~---------~~~~~~~vEViG~V~~---------- 70 (107)
....++.|++|+|-|+|.+. .|+..-+..-|+ |.|+|.++.. ....+..|.|.|+|..
T Consensus 8 ~l~~~~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~ 87 (585)
T 1c0a_A 8 QLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDM 87 (585)
T ss_dssp GCCGGGTTCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTS
T ss_pred HHHHHhCCCEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccC
Confidence 33467899999999999955 355433444343 6788877432 1345899999999941
Q ss_pred ---CCCEEEEEEEeCC
Q 033976 71 ---DRSIRAEIWNNFG 83 (107)
Q Consensus 71 ---~~si~~~~~~~~g 83 (107)
+..|.+..+.-++
T Consensus 88 ~~geiEl~~~~i~vl~ 103 (585)
T 1c0a_A 88 ATGEIEVLASSLTIIN 103 (585)
T ss_dssp TTTTEEEEEEEEEEEE
T ss_pred CCccEEEEEeEEEEEe
Confidence 2346666665554
No 19
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=91.41 E-value=1.2 Score=29.11 Aligned_cols=57 Identities=12% Similarity=-0.006 Sum_probs=44.7
Q ss_pred hhccCCCeEEEEEEEe-eccCCeEEEEeCCCCEEEEEccCC-CC----CCCCEEEEEEEECCCC
Q 033976 15 MRMYVGRRIRTVIQVI-QSDGGGVTGKSTDGHQLVVKGPQP-GF----PLTTFVEVIGIADTDR 72 (107)
Q Consensus 15 L~~~~Gk~VrlvGkV~-~~~g~~~~~~s~D~g~V~v~l~~~-~~----~~~~~vEViG~V~~~~ 72 (107)
+...-+..|.|-|++. ++.++....+-.- |+|+|.+... .. ....-|+|.|+|+.+.
T Consensus 32 ~~~~Dd~~V~L~G~Iv~~~~~d~Y~F~D~T-G~I~VeId~~~w~g~~v~p~~~Vri~GevDkd~ 94 (109)
T 1nnx_A 32 KSLRDDTWVTLRGNIVERISDDLYVFKDAS-GTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDW 94 (109)
T ss_dssp TTSCSSEEEEEEEEEEEEEETTEEEEEETT-EEEEEECCGGGSTTCCCCTTSCEEEEEEEEEET
T ss_pred hhCcCCCeEEEEEEEEEEeCCCeEEEECCC-ccEEEEEChhhcCCcccCCCCEEEEEEEECCCC
Confidence 4557899999999999 6688888787654 6999998654 22 2478999999998655
No 20
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=90.60 E-value=1.5 Score=32.37 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=43.4
Q ss_pred CeEEEEEEEeecc--CCeEEEEeCCC--CEEEEEccCCC---------CCCCCEEEEEEEEC---CCCCEEEEEEEeCCC
Q 033976 21 RRIRTVIQVIQSD--GGGVTGKSTDG--HQLVVKGPQPG---------FPLTTFVEVIGIAD---TDRSIRAEIWNNFGN 84 (107)
Q Consensus 21 k~VrlvGkV~~~~--g~~~~~~s~D~--g~V~v~l~~~~---------~~~~~~vEViG~V~---~~~si~~~~~~~~g~ 84 (107)
+.|++||.|.+++ ...+.++-.|+ ++|.+++-.+. ...+.||.|.|++. +...|.+..+....|
T Consensus 72 ~~V~ivG~V~~i~~~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLED 151 (270)
T ss_dssp SEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred EEEEEEEEEEEEEeccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCCeeEEEEEEEEecCC
Confidence 4799999999662 34455555553 36887654321 22599999999996 455688887777654
No 21
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=90.14 E-value=1.6 Score=34.60 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=45.1
Q ss_pred hccCCCeEEEEEEEeec--cCCeEEEEeCCC-CEEEEEccCCC-----------CCCCCEEEEEEEECC------CCCEE
Q 033976 16 RMYVGRRIRTVIQVIQS--DGGGVTGKSTDG-HQLVVKGPQPG-----------FPLTTFVEVIGIADT------DRSIR 75 (107)
Q Consensus 16 ~~~~Gk~VrlvGkV~~~--~g~~~~~~s~D~-g~V~v~l~~~~-----------~~~~~~vEViG~V~~------~~si~ 75 (107)
.++.|++|++-|+|.+. .|+..-+...|+ |.++|.++... ...+..|.|.|+|.. +..|.
T Consensus 12 ~~~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~~~~~~el~ 91 (438)
T 3nem_A 12 EELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEIL 91 (438)
T ss_dssp GGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTTSTTSEEEE
T ss_pred hhcCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCCCcEEEE
Confidence 45689999999999955 466543433333 46787775432 235899999999962 23466
Q ss_pred EEEEEeCC
Q 033976 76 AEIWNNFG 83 (107)
Q Consensus 76 ~~~~~~~g 83 (107)
+..+.-++
T Consensus 92 ~~~i~vl~ 99 (438)
T 3nem_A 92 PEKIVVLN 99 (438)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 66665444
No 22
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=89.75 E-value=1.6 Score=35.34 Aligned_cols=64 Identities=9% Similarity=0.034 Sum_probs=43.8
Q ss_pred CCeEEEEEEEeec--cCCeEEEEeCCC-CEEEEEccCCC------------CCCCCEEEEEEEEC----CCCCEEEEEEE
Q 033976 20 GRRIRTVIQVIQS--DGGGVTGKSTDG-HQLVVKGPQPG------------FPLTTFVEVIGIAD----TDRSIRAEIWN 80 (107)
Q Consensus 20 Gk~VrlvGkV~~~--~g~~~~~~s~D~-g~V~v~l~~~~------------~~~~~~vEViG~V~----~~~si~~~~~~ 80 (107)
|+.|+|-|+|.+. .|+..-+..-|+ |.|+|.++... ...+..|.|.|+|. ++.+|.+..+.
T Consensus 64 ~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i~ 143 (504)
T 1e1o_A 64 NIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELR 143 (504)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred CCEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCCceEEEEEEEEE
Confidence 9999999999955 455544444343 57888764321 13489999999995 35667777776
Q ss_pred eCC
Q 033976 81 NFG 83 (107)
Q Consensus 81 ~~g 83 (107)
-++
T Consensus 144 vl~ 146 (504)
T 1e1o_A 144 LLT 146 (504)
T ss_dssp EEE
T ss_pred Eec
Confidence 554
No 23
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=89.51 E-value=1.6 Score=35.63 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=44.7
Q ss_pred CCeEEEEEEEeec--cCCeEEEEeCC-CCEEEEEccCC-----------CCCCCCEEEEEEEEC----CCCCEEEEEEEe
Q 033976 20 GRRIRTVIQVIQS--DGGGVTGKSTD-GHQLVVKGPQP-----------GFPLTTFVEVIGIAD----TDRSIRAEIWNN 81 (107)
Q Consensus 20 Gk~VrlvGkV~~~--~g~~~~~~s~D-~g~V~v~l~~~-----------~~~~~~~vEViG~V~----~~~si~~~~~~~ 81 (107)
|+.|+|-|+|.+. .|+..-+...| .|.|+|.++.. ....+..|.|.|+|. ++.+|.+..+.-
T Consensus 86 g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~v 165 (529)
T 4ex5_A 86 SLEVAIAGRMMLKRVMGKASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRL 165 (529)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CcEEEEEEEEEeeecCCCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEE
Confidence 8999999999965 36653343333 36888877542 134699999999995 355677777765
Q ss_pred CC
Q 033976 82 FG 83 (107)
Q Consensus 82 ~g 83 (107)
++
T Consensus 166 Ls 167 (529)
T 4ex5_A 166 LA 167 (529)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 24
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=89.46 E-value=1.2 Score=36.66 Aligned_cols=69 Identities=12% Similarity=0.018 Sum_probs=45.5
Q ss_pred hhccCCCeEEEEEEEeec--cCCeEEEEeCC-CCEEEEEccCCC--------CCCCCEEEEEEEECC-----------CC
Q 033976 15 MRMYVGRRIRTVIQVIQS--DGGGVTGKSTD-GHQLVVKGPQPG--------FPLTTFVEVIGIADT-----------DR 72 (107)
Q Consensus 15 L~~~~Gk~VrlvGkV~~~--~g~~~~~~s~D-~g~V~v~l~~~~--------~~~~~~vEViG~V~~-----------~~ 72 (107)
-.++.|++|+|-|+|.+. .|+..-+..-| .|.|+|.++... ...+.+|.|.|+|.. +.
T Consensus 11 ~~~~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~ 90 (580)
T 1l0w_A 11 RETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRV 90 (580)
T ss_dssp CGGGTTCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTE
T ss_pred HHHhCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCccE
Confidence 357899999999999955 35543344333 367888775421 245899999999952 23
Q ss_pred CEEEEEEEeCC
Q 033976 73 SIRAEIWNNFG 83 (107)
Q Consensus 73 si~~~~~~~~g 83 (107)
.|.+..+.-++
T Consensus 91 Ei~~~~i~vl~ 101 (580)
T 1l0w_A 91 EVELSALEVLA 101 (580)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEeEEEEec
Confidence 46666655444
No 25
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=89.03 E-value=0.86 Score=36.07 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=46.3
Q ss_pred hccCCCeEEEEEEEeec--cCCeEEEEeCCC-CEEEEEccCC-----------CCCCCCEEEEEEEECC------CCCEE
Q 033976 16 RMYVGRRIRTVIQVIQS--DGGGVTGKSTDG-HQLVVKGPQP-----------GFPLTTFVEVIGIADT------DRSIR 75 (107)
Q Consensus 16 ~~~~Gk~VrlvGkV~~~--~g~~~~~~s~D~-g~V~v~l~~~-----------~~~~~~~vEViG~V~~------~~si~ 75 (107)
.++.|++|++-|+|.+. .|+..-+..-|+ |.++|.++.. ....+..|+|.|+|.. +.+|.
T Consensus 12 ~~~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~ 91 (434)
T 1x54_A 12 PELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVH 91 (434)
T ss_dssp GGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSGGGEEEE
T ss_pred HHhCCCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecCCCCccEEEE
Confidence 57899999999999955 455544444443 6688876421 1345999999999952 34477
Q ss_pred EEEEEeCC
Q 033976 76 AEIWNNFG 83 (107)
Q Consensus 76 ~~~~~~~g 83 (107)
+..+.-++
T Consensus 92 ~~~~~vl~ 99 (434)
T 1x54_A 92 VEKLEVIQ 99 (434)
T ss_dssp EEEEEEEE
T ss_pred EeEEEEee
Confidence 76665554
No 26
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=88.89 E-value=1.3 Score=35.55 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=48.3
Q ss_pred eeeehhhhh-c-cCCCeEEEEEEEeec--cCCe-EEEEeCC-CCEEEEEccCC--------------CCCCCCEEEEEEE
Q 033976 8 VFVNGGLMR-M-YVGRRIRTVIQVIQS--DGGG-VTGKSTD-GHQLVVKGPQP--------------GFPLTTFVEVIGI 67 (107)
Q Consensus 8 pRVn~~~L~-~-~~Gk~VrlvGkV~~~--~g~~-~~~~s~D-~g~V~v~l~~~--------------~~~~~~~vEViG~ 67 (107)
.|+....|. . +.|++|+|-|+|.+. .|+. .-+..-| .|.|+|.++.. ....+..|+|.|+
T Consensus 22 ~~~~~~~l~~~~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~ 101 (487)
T 1eov_A 22 KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGI 101 (487)
T ss_dssp CCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEE
T ss_pred ceeEHHHhcccccCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEE
Confidence 345555553 4 789999999999965 3554 2333333 36788877432 0235899999999
Q ss_pred ECC-----------CCCEEEEEEEeCC
Q 033976 68 ADT-----------DRSIRAEIWNNFG 83 (107)
Q Consensus 68 V~~-----------~~si~~~~~~~~g 83 (107)
|.. +..|.+..+.-++
T Consensus 102 v~~~~~~~~~~~~g~~El~~~~i~vl~ 128 (487)
T 1eov_A 102 VKKVDEPIKSATVQNLEIHITKIYTIS 128 (487)
T ss_dssp EEECSSCCTTSSEEEEEEEEEEEEEEE
T ss_pred EEeCCCCCcCCCCCcEEEEEEEEEEee
Confidence 952 1346666665555
No 27
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=88.69 E-value=1.6 Score=34.42 Aligned_cols=71 Identities=15% Similarity=0.060 Sum_probs=47.4
Q ss_pred hhhhccCCCeEEEEEEEeecc--C-CeEEEEeCC-CCEEEEEccCC-C-------CCCCCEEEEEEEECC---------C
Q 033976 13 GLMRMYVGRRIRTVIQVIQSD--G-GGVTGKSTD-GHQLVVKGPQP-G-------FPLTTFVEVIGIADT---------D 71 (107)
Q Consensus 13 ~~L~~~~Gk~VrlvGkV~~~~--g-~~~~~~s~D-~g~V~v~l~~~-~-------~~~~~~vEViG~V~~---------~ 71 (107)
+.+.++.|++|++-|+|.+.. | +..-+..-| .|.++|.++.. . ...+.+|.|.|+|.. +
T Consensus 4 ~~~~~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~g~ 83 (435)
T 2xgt_A 4 RDLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNG 83 (435)
T ss_dssp GGGGGGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC------TT
T ss_pred hhhhhcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecCCCcCCCCc
Confidence 346788999999999999664 3 333343333 36788877532 1 245899999999952 3
Q ss_pred CCEEEEEEEeCC
Q 033976 72 RSIRAEIWNNFG 83 (107)
Q Consensus 72 ~si~~~~~~~~g 83 (107)
..|.+..+.-++
T Consensus 84 ~El~~~~~~vl~ 95 (435)
T 2xgt_A 84 HELIADFWKIIG 95 (435)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEee
Confidence 456676666555
No 28
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=88.49 E-value=0.96 Score=36.46 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=44.2
Q ss_pred CCeEEEEEEEeec--cCCeEEEEeCCC-CEEEEEccCC-----------CCCCCCEEEEEEEEC----CCCCEEEEEEEe
Q 033976 20 GRRIRTVIQVIQS--DGGGVTGKSTDG-HQLVVKGPQP-----------GFPLTTFVEVIGIAD----TDRSIRAEIWNN 81 (107)
Q Consensus 20 Gk~VrlvGkV~~~--~g~~~~~~s~D~-g~V~v~l~~~-----------~~~~~~~vEViG~V~----~~~si~~~~~~~ 81 (107)
|+.|+|-|+|.+. .|+..-+..-|+ |.|+|.++.. ....+..|.|.|+|. ++.+|.+..+.-
T Consensus 56 ~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~ge~ei~~~~i~v 135 (493)
T 3a74_A 56 QIEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTKVGELSIKVSSYEF 135 (493)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCEEEEEEEEEEEecCCCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCcEEEEEEEEEE
Confidence 9999999999955 455544444443 5788776422 135699999999995 355677777765
Q ss_pred CC
Q 033976 82 FG 83 (107)
Q Consensus 82 ~g 83 (107)
++
T Consensus 136 l~ 137 (493)
T 3a74_A 136 LT 137 (493)
T ss_dssp EE
T ss_pred cc
Confidence 55
No 29
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=86.49 E-value=2.3 Score=34.90 Aligned_cols=76 Identities=9% Similarity=0.029 Sum_probs=51.3
Q ss_pred ceeeehhhhh-ccCCCeEEEEEEEeec--cCCeE--EEEeCCCCEEEEEccCC------------CCCCCCEEEEEEEEC
Q 033976 7 AVFVNGGLMR-MYVGRRIRTVIQVIQS--DGGGV--TGKSTDGHQLVVKGPQP------------GFPLTTFVEVIGIAD 69 (107)
Q Consensus 7 ~pRVn~~~L~-~~~Gk~VrlvGkV~~~--~g~~~--~~~s~D~g~V~v~l~~~------------~~~~~~~vEViG~V~ 69 (107)
..|+.-..|. .++|+.|+|-|+|.+. .|+.+ .++... +.|++.+... ....+..|+|.|+|.
T Consensus 48 ~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~-g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~ 126 (548)
T 3i7f_A 48 LKYTEIEELVPAMAEKTVTIRARVQAVRGKGNMVFLFLRKGI-YTCQALVMKSETISKEFVQFCQKISAESICDITGIVK 126 (548)
T ss_dssp CCBCCGGGCSGGGTTCEEEEEEEEEEEEECSSEEEEEEEETT-EEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEE
T ss_pred CceEEhhhcchhcCCCEEEEEEEEEEEecCCCeEEEEEEECC-eeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEE
Confidence 4677777775 7899999999999955 45543 344333 5788877541 124589999999995
Q ss_pred C-----------CCCEEEEEEEeCC
Q 033976 70 T-----------DRSIRAEIWNNFG 83 (107)
Q Consensus 70 ~-----------~~si~~~~~~~~g 83 (107)
. +..|.+..+.-++
T Consensus 127 ~~~~~~~~~~~~~~El~~~~i~vls 151 (548)
T 3i7f_A 127 AVEKPIEKATQQDVEIHVTSIAVVS 151 (548)
T ss_dssp ECSSCCTTSSSCSEEEEEEEEEEEE
T ss_pred eCCcccccCCCCcEEEEEeEEEEEe
Confidence 2 2346666665444
No 30
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=83.58 E-value=3.2 Score=33.66 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=43.7
Q ss_pred CCCeEEEEEEEeecc--C-CeEEEEeCC-CCEEEEEccCCC-------------CCCCCEEEEEEEEC----CCCCEEEE
Q 033976 19 VGRRIRTVIQVIQSD--G-GGVTGKSTD-GHQLVVKGPQPG-------------FPLTTFVEVIGIAD----TDRSIRAE 77 (107)
Q Consensus 19 ~Gk~VrlvGkV~~~~--g-~~~~~~s~D-~g~V~v~l~~~~-------------~~~~~~vEViG~V~----~~~si~~~ 77 (107)
.|++|+|-|+|.+.. | +..-+...| .|.|+|.++... ...+..|.|.|+|. ++.+|.+.
T Consensus 54 ~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ge~ei~~~ 133 (521)
T 3bju_A 54 TDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPY 133 (521)
T ss_dssp SSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEE
T ss_pred CCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEEe
Confidence 588999999999654 5 443333333 367887764321 24589999999995 34567777
Q ss_pred EEEeCC
Q 033976 78 IWNNFG 83 (107)
Q Consensus 78 ~~~~~g 83 (107)
++.-++
T Consensus 134 ~i~~l~ 139 (521)
T 3bju_A 134 EITLLS 139 (521)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 776555
No 31
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.29 E-value=2.3 Score=27.42 Aligned_cols=49 Identities=12% Similarity=-0.057 Sum_probs=32.8
Q ss_pred eEEEEEEEeeccCCeEEEEeCCCCEE----EEEccCCCCCCCCEEEEEEEECC
Q 033976 22 RIRTVIQVIQSDGGGVTGKSTDGHQL----VVKGPQPGFPLTTFVEVIGIADT 70 (107)
Q Consensus 22 ~VrlvGkV~~~~g~~~~~~s~D~g~V----~v~l~~~~~~~~~~vEViG~V~~ 70 (107)
.+.-+|++.|.-.+.+.+++..+..+ ++...+.-..+++..||.|.|+.
T Consensus 24 ~v~~lG~v~~~~e~~vvik~~~~~~vl~~~s~l~~edk~~IGkV~EiFGpV~~ 76 (103)
T 2eqn_A 24 ELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAH 76 (103)
T ss_dssp CCEEEEEEEEECSSSEEEEECSSCCCCCTTCEEECTTSBEEEEEEEEESCSSS
T ss_pred eeEEeEEEEEEcCCeEEEEeCCCCcCCcCCCEEEecCCcEEEEEEEEECCCCC
Confidence 78899999998778888998864322 11111111345888888888865
No 32
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=68.65 E-value=12 Score=25.26 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=39.9
Q ss_pred CCCeEEEE-------EEEeeccCCeEEEEeCCCCEEEEEccCCC--CCCCCEEEEEEEECC
Q 033976 19 VGRRIRTV-------IQVIQSDGGGVTGKSTDGHQLVVKGPQPG--FPLTTFVEVIGIADT 70 (107)
Q Consensus 19 ~Gk~Vrlv-------GkV~~~~g~~~~~~s~D~g~V~v~l~~~~--~~~~~~vEViG~V~~ 70 (107)
.|-.|+=+ |+..+..|..+++-.-|++.++|+|++.. .......=.||.|..
T Consensus 64 ~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~ke~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn 124 (136)
T 2ftc_B 64 VGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCVATVGRVSN 124 (136)
T ss_pred CCCEEEEEeccCCCCcEEEEeCCCeEEEEEecCCEEEEECCCCCeEEECcCCcEEEEEecC
Confidence 45555555 67888899999999999999999997763 224777778899864
No 33
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=68.36 E-value=12 Score=26.49 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=41.1
Q ss_pred CCCeEEEE-------EEEeeccCCeEEEEeCCCCEEEEEccCCC--CCCCCEEEEEEEECC
Q 033976 19 VGRRIRTV-------IQVIQSDGGGVTGKSTDGHQLVVKGPQPG--FPLTTFVEVIGIADT 70 (107)
Q Consensus 19 ~Gk~Vrlv-------GkV~~~~g~~~~~~s~D~g~V~v~l~~~~--~~~~~~vEViG~V~~ 70 (107)
.|-.|+=+ |++.+..|..+++..-|++.++|+|++.. ......-=.||.|..
T Consensus 77 ~Gt~I~NIE~~pG~gg~laRsAGt~a~ii~ke~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn 137 (178)
T 1giy_D 77 VGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGEVGN 137 (178)
T ss_pred CCCEEEeEeccCCCCeEEEEeCCCeEEEEEecCCeEEEECCCCCEEEEcccCcEEEEEecC
Confidence 46666665 78889999999999999999999997763 224777778999964
No 34
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=64.26 E-value=15 Score=23.43 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=29.5
Q ss_pred hhccCCCeEE--------EEEEEeeccCCeEEEEeCCCCEEEEEccCC--CCCCCCEEEE
Q 033976 15 MRMYVGRRIR--------TVIQVIQSDGGGVTGKSTDGHQLVVKGPQP--GFPLTTFVEV 64 (107)
Q Consensus 15 L~~~~Gk~Vr--------lvGkV~~~~g~~~~~~s~D~g~V~v~l~~~--~~~~~~~vEV 64 (107)
=..|+||.|. ++|||.+.-|++ |.|..++... ...++..|.|
T Consensus 35 a~fYlGKrvayvyka~rviwGKVtR~HGns--------GvVrAkF~~nLP~kA~G~~VrV 86 (95)
T 1sqr_A 35 ASKLIGRLVLWKSPSGKILKGKIVRVHGTK--------GAVRARFEKGLPGQALGDYVEI 86 (95)
T ss_dssp HHHHTTCEEEECCSTTCCEEEEEEEESSSS--------SCEEEECSSCCSSSCTTCEEEC
T ss_pred HHhhcCCeEEEEECCCCEEEEEEEeeeCCC--------CEEEEEeCCCCChHHcCCEEEE
Confidence 4567999986 689999998874 6677777654 2345666654
No 35
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=61.69 E-value=11 Score=25.75 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=27.4
Q ss_pred CceeeehhhhhccCCCeEEE------------EEEEeeccCCeEEEEeC
Q 033976 6 PAVFVNGGLMRMYVGRRIRT------------VIQVIQSDGGGVTGKST 42 (107)
Q Consensus 6 ~~pRVn~~~L~~~~Gk~Vrl------------vGkV~~~~g~~~~~~s~ 42 (107)
-+|-.......+|+|+.|.+ .|++...+++.+++...
T Consensus 90 dRpL~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~v~l~~~ 138 (164)
T 1ib8_A 90 ERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYM 138 (164)
T ss_dssp SSCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCCHHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCCEEEEEEe
Confidence 36788889999999999976 46666666666666543
No 36
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=57.32 E-value=18 Score=23.95 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=21.7
Q ss_pred EEEEEEeec-cCCeEEEEeCCCCEEEEEccC
Q 033976 24 RTVIQVIQS-DGGGVTGKSTDGHQLVVKGPQ 53 (107)
Q Consensus 24 rlvGkV~~~-~g~~~~~~s~D~g~V~v~l~~ 53 (107)
..-|+|.++ ||+++.+.. +|..++|.|..
T Consensus 9 ~~~~~V~~V~DGDTi~v~~-~g~~~~VRL~g 38 (143)
T 4eqp_A 9 KEPATLIKAIDGDTVKLMY-KGQPMTFRLLL 38 (143)
T ss_dssp EEEEEEEEECSSSEEEEEE-TTEEEEEEETT
T ss_pred eeeEEEEEEECCCEEEEEe-CCcEEEEEEEe
Confidence 345677764 999999986 57778888854
No 37
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=57.21 E-value=11 Score=23.48 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=19.7
Q ss_pred eehhhhhccCCCeEEEE--------EEEeeccCCe
Q 033976 10 VNGGLMRMYVGRRIRTV--------IQVIQSDGGG 36 (107)
Q Consensus 10 Vn~~~L~~~~Gk~Vrlv--------GkV~~~~g~~ 36 (107)
.+.-.|.+|+||.|++. |.|..+|..+
T Consensus 7 ~~p~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s 41 (86)
T 1y96_A 7 KGPLEWQDYIYKEVRVTASEKNEYKGWVLTTDPVS 41 (86)
T ss_dssp SCHHHHHHTTTCEEEEEETTTEEEEEEEEEECTTT
T ss_pred CCHHHHHhhcCCEEEEEEcCCCEEEEEEEEECCCc
Confidence 35668999999999875 6666666543
No 38
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=56.63 E-value=19 Score=22.57 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=28.3
Q ss_pred hhccCCCeEEE--------EEEEeeccCCeEEEEeCCCCEEEEEccCC--CCCCCCEEEE
Q 033976 15 MRMYVGRRIRT--------VIQVIQSDGGGVTGKSTDGHQLVVKGPQP--GFPLTTFVEV 64 (107)
Q Consensus 15 L~~~~Gk~Vrl--------vGkV~~~~g~~~~~~s~D~g~V~v~l~~~--~~~~~~~vEV 64 (107)
-..|+||.|.. .|||.+..|++ |.|..++.+. ...++..|.|
T Consensus 35 a~fylGKrvayv~~~g~~iwGKVtr~HGns--------GvVrAkF~~nLP~~a~G~~Vri 86 (87)
T 3j21_c 35 ASKLIGRLVLWKSPSGKILKGKIVRVHGTK--------GAVRARFEKGLPGQALGDYVEI 86 (87)
T ss_dssp HGGGTTCEEEECCSSSCCEEEEEEEECCSS--------SCEEEEESSCCCSSCSCCEECC
T ss_pred HHhhcCceEEEEeCCCCEEEEEEEeeeCCC--------CeEEEEeCCCCChHHcCCeEEe
Confidence 45678888876 59999988873 6677777554 2335665544
No 39
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.49 E-value=30 Score=20.79 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=27.0
Q ss_pred hccCCCeEEE--------EEEEeeccCCeEEEEe-CCCCEEEEEc
Q 033976 16 RMYVGRRIRT--------VIQVIQSDGGGVTGKS-TDGHQLVVKG 51 (107)
Q Consensus 16 ~~~~Gk~Vrl--------vGkV~~~~g~~~~~~s-~D~g~V~v~l 51 (107)
...+||+|+| +|+|....+..+.++. +-.+.|+|..
T Consensus 17 d~liGktV~I~kGpyKG~~GiVkd~t~~~~RVELhs~~K~VtV~r 61 (71)
T 2e70_A 17 NELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDR 61 (71)
T ss_dssp TSSTTSEEEECSSTTTTCEEEEEEECSSCEEEEESSSCCEEEECT
T ss_pred cccCCCEEEEeccCCCCeEEEEEECCCCeEEEEecCCceEEEEEh
Confidence 4578999997 7899988888877775 3357777655
No 40
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=53.12 E-value=27 Score=20.37 Aligned_cols=43 Identities=14% Similarity=-0.027 Sum_probs=32.0
Q ss_pred EEEEEEEeeccC-CeEEEEeCCCCEEEEEccCCC------CCCCCEEEEE
Q 033976 23 IRTVIQVIQSDG-GGVTGKSTDGHQLVVKGPQPG------FPLTTFVEVI 65 (107)
Q Consensus 23 VrlvGkV~~~~g-~~~~~~s~D~g~V~v~l~~~~------~~~~~~vEVi 65 (107)
+-+-|+|...-| ..+.+++.||..+.+++..-- ...+.+|+|-
T Consensus 6 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve 55 (71)
T 1ah9_A 6 IEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVE 55 (71)
T ss_dssp EECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCE
T ss_pred eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEE
Confidence 445699998777 889999999999999885431 1248888765
No 41
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=53.07 E-value=19 Score=28.95 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=27.0
Q ss_pred CCCeEEEEEEEeec-cCCeEEEEeCCCCEEEEEccC
Q 033976 19 VGRRIRTVIQVIQS-DGGGVTGKSTDGHQLVVKGPQ 53 (107)
Q Consensus 19 ~Gk~VrlvGkV~~~-~g~~~~~~s~D~g~V~v~l~~ 53 (107)
.++.-.+-|+|.++ ||+++.+...+|.+.+|.|..
T Consensus 19 ~~~~~~~~~~V~~V~DGDTi~v~~~~g~~~~VRL~g 54 (570)
T 3bdl_A 19 SHMDKQFVAKVMQVLNADAIVVKLNSGDYKTIHLSS 54 (570)
T ss_dssp --CCSEEEEEEEEEETTTEEEEECTTSCEEEEEETT
T ss_pred ccCCcEEEEEEEEEccCCEEEEECCCCCEEEEEEEE
Confidence 34445677998865 999999988889899998865
No 42
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=46.60 E-value=10 Score=25.60 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=31.1
Q ss_pred EEEeeccCCeEEEEeCCCCEEEEEccCCC--CCCCCEEEEEEEE
Q 033976 27 IQVIQSDGGGVTGKSTDGHQLVVKGPQPG--FPLTTFVEVIGIA 68 (107)
Q Consensus 27 GkV~~~~g~~~~~~s~D~g~V~v~l~~~~--~~~~~~vEViG~V 68 (107)
|+..+..|..+++..-|++.++|+|++.. .......=.||.|
T Consensus 92 g~laRsAGt~a~ii~ke~~~~~vrLPSGe~r~v~~~c~AtIG~V 135 (137)
T 1rl2_A 92 GQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGEV 135 (137)
T ss_dssp EEESSSSSCCEEEEEEETTEEEEECTTSCEEEEETTSEEEESCC
T ss_pred cEEEEeCCCeEEEEEEcCCEEEEECCCCCeEEECCcCcEEEEEc
Confidence 78888899999998889999999997762 1124555555655
No 43
>3kuv_A Fluoroacetyl coenzyme A thioesterase; fluoroacetyl-COA thioesterase FLK, hot DOG folding, thioeste hydrolase; 1.50A {Streptomyces cattleya} PDB: 3kuw_A 3kvu_A* 3p2q_A 3p2r_A 3p2s_A 3kv7_A 3kv8_A 3kvz_A* 3kw1_A* 3kx7_A 3kx8_A 3kvi_A 3p3i_A 3p3f_A
Probab=45.67 E-value=31 Score=22.86 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=28.7
Q ss_pred eeeehhhhh-ccCCCeEEEEEEEeeccCCeE--EEEeCCCCE
Q 033976 8 VFVNGGLMR-MYVGRRIRTVIQVIQSDGGGV--TGKSTDGHQ 46 (107)
Q Consensus 8 pRVn~~~L~-~~~Gk~VrlvGkV~~~~g~~~--~~~s~D~g~ 46 (107)
..+|.++|+ -.+|.+|++.+++.+++++.+ .+++.|++.
T Consensus 70 ~~v~v~Hlapt~~G~~V~~~a~l~~v~gr~~~f~v~a~d~~~ 111 (139)
T 3kuv_A 70 TAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVD 111 (139)
T ss_dssp EEEEEECCSCCCTTSEEEEEEEEEEEETTEEEEEEEEECSSS
T ss_pred EEEEEEEccCCCCCCEEEEEEEEEEECCCEEEEEEEEEECCE
Confidence 356777774 478999999999999999864 445555554
No 44
>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}
Probab=45.14 E-value=23 Score=25.52 Aligned_cols=31 Identities=6% Similarity=-0.012 Sum_probs=25.4
Q ss_pred EEEEEEeeccCCeEEEE--eCCCCEEEEEccCC
Q 033976 24 RTVIQVIQSDGGGVTGK--STDGHQLVVKGPQP 54 (107)
Q Consensus 24 rlvGkV~~~~g~~~~~~--s~D~g~V~v~l~~~ 54 (107)
...|++...+.+.++++ +.++|.|.|++++-
T Consensus 271 ~~~g~l~~~~~~~~~~~~~~~~~~~~~vh~pr~ 303 (310)
T 3ic8_A 271 AVEGELMFTGREELILRREDNRAGVVHVHFPRL 303 (310)
T ss_dssp CEEEEEEEECSSCEEEEEEETTTEEEEEEECST
T ss_pred CCceEEEEecCcEEEEEEeCCCCCeEEEEcCCC
Confidence 35899999999998885 56788999999653
No 45
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=44.33 E-value=33 Score=22.05 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=30.1
Q ss_pred CCeEEEEEEEeecc-CCeEEEEeCCCCEEEEEccCC--C---CCCCCEEEEEEEECC
Q 033976 20 GRRIRTVIQVIQSD-GGGVTGKSTDGHQLVVKGPQP--G---FPLTTFVEVIGIADT 70 (107)
Q Consensus 20 Gk~VrlvGkV~~~~-g~~~~~~s~D~g~V~v~l~~~--~---~~~~~~vEViG~V~~ 70 (107)
|..+.-+|++.+.. .+.+.++++ . .-.++.+ . ...++.+||+|-|+.
T Consensus 5 ~~~mk~lG~~~H~~~~g~lVvk~~--~--vP~~na~Vy~enk~~IGKV~DIfGPV~~ 57 (104)
T 2hvy_B 5 GEKMKRLGKVLHYAKQGFLIVRTN--W--VPSLNDRVVDKRLQFVGIVKDVFGPVKM 57 (104)
T ss_dssp ---CEEEEEEEEEETTTEEEEECS--S--CCCTTCEEECTTCCEEEEEEEEEEESSS
T ss_pred cceeeEeEEEEEEcCCCCEEEEeC--C--CCCCCCEeEcCCCCEeEEEEEEECCCCC
Confidence 67788999999887 667778864 1 1122222 1 234899999999975
No 46
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=44.09 E-value=13 Score=24.91 Aligned_cols=51 Identities=12% Similarity=-0.000 Sum_probs=32.4
Q ss_pred CCeEEEEEEEeeccCCeEEEEeCCCCEEE-EEccCC-----CCCCCCEEEEEEEECC
Q 033976 20 GRRIRTVIQVIQSDGGGVTGKSTDGHQLV-VKGPQP-----GFPLTTFVEVIGIADT 70 (107)
Q Consensus 20 Gk~VrlvGkV~~~~g~~~~~~s~D~g~V~-v~l~~~-----~~~~~~~vEViG~V~~ 70 (107)
.-.|.-+|++.+.=++.+.++++..++.. ..++++ -..+++..||-|.|+.
T Consensus 27 ~~~v~~lG~i~~ive~~vVik~~~~g~~~vl~~~s~l~ledr~~IGkV~EiFGpV~~ 83 (131)
T 2v3m_A 27 KTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCLEDRTLIGMLTEVFGPLQN 83 (131)
T ss_dssp TSCEEEEEEEEEEETTEEEEEEC-----CCCCTTCEEEETTCCEEEECCEEESCSSS
T ss_pred CCEEEEeeeEEEEeCCcEEEEecCCCCccccCCCCEEEecCCcEEEEEEEEeCCCCC
Confidence 46799999999998888888887533322 122221 1345788888888865
No 47
>1oqk_A Conserved protein MTH11; OB fold, archaeal RNAse P protein subunit, hydrolase; NMR {Methanothermobacterthermautotrophicus} SCOP: b.137.1.1
Probab=43.82 E-value=28 Score=21.93 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=27.7
Q ss_pred eeehhhh--hccCCCeEE-----------EEEEEeeccCCeEEEEeCCCCEEEEEc
Q 033976 9 FVNGGLM--RMYVGRRIR-----------TVIQVIQSDGGGVTGKSTDGHQLVVKG 51 (107)
Q Consensus 9 RVn~~~L--~~~~Gk~Vr-----------lvGkV~~~~g~~~~~~s~D~g~V~v~l 51 (107)
+++++.| ..|.|..|+ +-|.|..=.-+++.+.+.||+..+|--
T Consensus 5 ~~t~~~l~~~dl~G~~v~Vv~S~~pslvGi~GiVV~ET~ntf~I~t~~~~~k~VPK 60 (97)
T 1oqk_A 5 LITPRNIFRHELIGLSVRIARSVHRDIQGISGRVVDETRNTLRIEMDDGREITVPK 60 (97)
T ss_dssp --------CCCCSSCEEEEEECSSTTTTTCEEECCEEETTEEEEEETTTEEEEEEC
T ss_pred ccCHHHhhHHHhcCCEEEEEEcCCCCccCcEEEEEEcccceEEEEcCCCcEEEEEC
Confidence 4555555 457898888 458888878889999999877666633
No 48
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=43.69 E-value=56 Score=20.18 Aligned_cols=50 Identities=12% Similarity=0.035 Sum_probs=34.3
Q ss_pred CCCeEEEEEEEeec---------cC---CeEEEEeCC-CCEEEEEccCCC------CCCCCEEEEEEEE
Q 033976 19 VGRRIRTVIQVIQS---------DG---GGVTGKSTD-GHQLVVKGPQPG------FPLTTFVEVIGIA 68 (107)
Q Consensus 19 ~Gk~VrlvGkV~~~---------~g---~~~~~~s~D-~g~V~v~l~~~~------~~~~~~vEViG~V 68 (107)
.|..|.++|+|.+. +| ..+.+...| -|.|.+.+=.+. ...+.+|.|.|.+
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~~~~~l~~G~vv~i~g~~ 83 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLLKKFREGDVIRIKDVN 83 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGGGGGTCCTTSEEEEEEEE
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhhhhhcCCCCCEEEEEeeE
Confidence 58999999999966 33 234444333 367887764442 2359999999999
No 49
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=43.49 E-value=1.1e+02 Score=24.38 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=56.1
Q ss_pred CeEEEEEEEe--------eccCCeEEEEeC----CCCEEEEEccCC-C--CCCCCEEEEEEEECCCCCEEEEEEE-----
Q 033976 21 RRIRTVIQVI--------QSDGGGVTGKST----DGHQLVVKGPQP-G--FPLTTFVEVIGIADTDRSIRAEIWN----- 80 (107)
Q Consensus 21 k~VrlvGkV~--------~~~g~~~~~~s~----D~g~V~v~l~~~-~--~~~~~~vEViG~V~~~~si~~~~~~----- 80 (107)
..|..|||+. +++..++.++++ .|..|.+.|+.- + .-.++.|=+.|+=.....+.+....
T Consensus 47 ~~v~~vGRI~~Ds~~~egkLn~~Sl~LE~sr~~g~G~rV~Ldls~l~~~slFPGQIVav~G~N~~G~~f~v~ei~~~P~~ 126 (460)
T 3flo_A 47 SEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYP 126 (460)
T ss_dssp SCEEEEEEEEESSSSCCSCCCTTSEEEECCHHHHTTCEEEEECTTCCCEEECTTCEEEEEEECSSSSCEEEEEECCCCCC
T ss_pred ccEEEEEEEeeCCCCCCCCcchhheEEEeccccCCCeEEEeecccCCceeecCCCEEEEEEEcCCCCEEEEeeeccCCCC
Confidence 5689999996 245578999876 789999999764 2 2349999999984333333333331
Q ss_pred -----------------------------eCC--CCCCHHHHHHHHHHHhc
Q 033976 81 -----------------------------NFG--NTFDTQSYNQLCQLANG 100 (107)
Q Consensus 81 -----------------------------~~g--~~fD~~~yn~lv~l~~~ 100 (107)
.|. +++|++-.+++++.++.
T Consensus 127 ~~p~s~~~~l~~~~~~~~~~~l~ivvAsGPyT~sdnl~yepL~~Ll~~v~~ 177 (460)
T 3flo_A 127 NSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINN 177 (460)
T ss_dssp CCCEEEHHHHHHHHHHHTSSCEEEEEEESCCSCSSCCCCHHHHHHHHHCCC
T ss_pred CCCCCCHHHhhhhhhhccCCCcEEEEEeCCccCCCccChHHHHHHHHHHHh
Confidence 121 58999999999998863
No 50
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.42 E-value=46 Score=21.45 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=29.5
Q ss_pred EEEEEeeccC-CeEEEEeCCCCEEEEEccCCC---CC--CCCEEEEE
Q 033976 25 TVIQVIQSDG-GGVTGKSTDGHQLVVKGPQPG---FP--LTTFVEVI 65 (107)
Q Consensus 25 lvGkV~~~~g-~~~~~~s~D~g~V~v~l~~~~---~~--~~~~vEVi 65 (107)
+.|+|...-| ..+.+++.||.++.++++.-- -+ .+.+|-|-
T Consensus 17 ~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe 63 (111)
T 2dgy_A 17 QIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD 63 (111)
T ss_dssp EEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEE
Confidence 6789996654 579999999999999996541 11 26666554
No 51
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=42.43 E-value=39 Score=21.82 Aligned_cols=41 Identities=20% Similarity=0.064 Sum_probs=31.0
Q ss_pred EEEEEeeccC-CeEEEEeCCCCEEEEEccCCC-----CCCCCEEEEE
Q 033976 25 TVIQVIQSDG-GGVTGKSTDGHQLVVKGPQPG-----FPLTTFVEVI 65 (107)
Q Consensus 25 lvGkV~~~~g-~~~~~~s~D~g~V~v~l~~~~-----~~~~~~vEVi 65 (107)
+.|+|...-| ..+.+++.||..+.+++..-- ...+.+|+|-
T Consensus 34 ~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve 80 (117)
T 2oqk_A 34 EYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVS 80 (117)
T ss_dssp EEEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEE
Confidence 4799997766 889999999999999884321 2358888875
No 52
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=41.49 E-value=36 Score=21.66 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=25.2
Q ss_pred eEEEEEEEeeccC-CeEEEEeCCCCEEEEEcc
Q 033976 22 RIRTVIQVIQSDG-GGVTGKSTDGHQLVVKGP 52 (107)
Q Consensus 22 ~VrlvGkV~~~~g-~~~~~~s~D~g~V~v~l~ 52 (107)
..-+.|+|...-| ..+.+++.||.++.++++
T Consensus 19 e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~ 50 (102)
T 1jt8_A 19 ENEILGIIEQMLGASRVRVRCLDGKTRLGRIP 50 (102)
T ss_dssp SCCEEEEEECSSCSSEEEEEEETTEEEEEECC
T ss_pred CCEEEEEEEEEcCCCEEEEEECCCCEEEEEEc
Confidence 3457899997655 579999999999999884
No 53
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=41.34 E-value=41 Score=23.68 Aligned_cols=42 Identities=19% Similarity=0.114 Sum_probs=32.2
Q ss_pred hhhhccCCCeEEEEEEEe-eccCCeEEEEeCCCCEEEEEccCC
Q 033976 13 GLMRMYVGRRIRTVIQVI-QSDGGGVTGKSTDGHQLVVKGPQP 54 (107)
Q Consensus 13 ~~L~~~~Gk~VrlvGkV~-~~~g~~~~~~s~D~g~V~v~l~~~ 54 (107)
..+.+..|+.|.-+-++- ...+.+..++++||..+-++...+
T Consensus 7 a~~~~l~G~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~ 49 (288)
T 3f7w_A 7 ARVTELTGREVAAVAERGHSHRWHLYRVELADGTPLFVKALPD 49 (288)
T ss_dssp HHHHHHHCCCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCT
T ss_pred HHHHHhcCCCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCC
Confidence 456667899998887776 345567889999999999998554
No 54
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A* 2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*
Probab=38.68 E-value=44 Score=22.07 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=25.4
Q ss_pred cCCCeEEEEEEEeeccCCeEEEE--eCC-CCEEEEEccC
Q 033976 18 YVGRRIRTVIQVIQSDGGGVTGK--STD-GHQLVVKGPQ 53 (107)
Q Consensus 18 ~~Gk~VrlvGkV~~~~g~~~~~~--s~D-~g~V~v~l~~ 53 (107)
..|+.++|.|++...+.+.+.+. ++. +..|-++++.
T Consensus 26 ~~G~~i~I~G~~~~~~~~rF~Inl~~g~~~~dialHfnp 64 (148)
T 2zhn_A 26 QDGLQITVNGTVLSSSGTRFAVNFQTGFSGNDIAFHFNP 64 (148)
T ss_dssp CTTCEEEEEEEECSSSCSBEEEEEESSSSSSCEEEEEEE
T ss_pred ccCCEEEEEEEECCCCCCEEEEEEeeCCCCCCEEEEEEE
Confidence 47999999999976666666664 332 2567777753
No 55
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=37.81 E-value=55 Score=21.40 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=25.7
Q ss_pred hhccCCCeEEE---------------EEEEeeccCCeEEEEeCCCCEEEEEccCC--CCCCCCEEEE
Q 033976 15 MRMYVGRRIRT---------------VIQVIQSDGGGVTGKSTDGHQLVVKGPQP--GFPLTTFVEV 64 (107)
Q Consensus 15 L~~~~Gk~Vrl---------------vGkV~~~~g~~~~~~s~D~g~V~v~l~~~--~~~~~~~vEV 64 (107)
-..|+||.|.. .|||.+..|+ .|.|..++... ...++.-|.|
T Consensus 48 a~fylGKrvayvykak~~~g~k~RviwGKVtR~HGn--------sGvVrAkF~~nLP~kA~G~~VrV 106 (113)
T 4a18_H 48 VAFYQGKRVVYIYKGQKKNGSNYRTIWGRIGKAHGN--------NGVAVARFAHNLPPQAIGSVLRV 106 (113)
T ss_dssp HHTTTTCEEEEEEEEEEETTEEEEEEEEEEEEEETT--------TTEEEEEESSCCCGGGGGSEEEE
T ss_pred HHhhcCCeEEEEEecCCCCCCeEEEEEEEEEeeeCC--------CCeEEEEeCCCCChHHcCCeEEE
Confidence 35578888765 5666666665 26777777554 1234666655
No 56
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=37.69 E-value=22 Score=24.11 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=35.9
Q ss_pred eeehhhhhc-----cCCCeEEEEEEEeeccCCeEEEEeCCCCEEEEEccCC-C-CCCCCEEEEEEEEC
Q 033976 9 FVNGGLMRM-----YVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQP-G-FPLTTFVEVIGIAD 69 (107)
Q Consensus 9 RVn~~~L~~-----~~Gk~VrlvGkV~~~~g~~~~~~s~D~g~V~v~l~~~-~-~~~~~~vEViG~V~ 69 (107)
+|..+.++. .+|..+.+ ++...++..-++..|+|.+|-| . ..+.=-|||+..|+
T Consensus 90 ~v~~~~f~~~~~~~~~G~~~~~-------~~~~~~V~~v~~~~V~vD~NHPLAG~~L~F~v~v~~v~~ 150 (157)
T 3pr9_A 90 LIPLSEFTKRGIKPIKGLTITI-------DGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVVD 150 (157)
T ss_dssp EEEHHHHHHTTCCCCTTCEEEE-------TTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEEEC
T ss_pred EcCHHHCCcccCCcCCCcEEEe-------cCCCeEEEEEcCCEEEEECCCccCCCeEEEEEEEEEEEe
Confidence 455555653 24666654 4445677777788999999888 2 45555688888875
No 57
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=36.96 E-value=21 Score=23.34 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=25.8
Q ss_pred hhccCCCeEE----------------EEEEEeeccCCeEEEEeCCCCEEEEEccCC--CCCCCCEEE
Q 033976 15 MRMYVGRRIR----------------TVIQVIQSDGGGVTGKSTDGHQLVVKGPQP--GFPLTTFVE 63 (107)
Q Consensus 15 L~~~~Gk~Vr----------------lvGkV~~~~g~~~~~~s~D~g~V~v~l~~~--~~~~~~~vE 63 (107)
-..|+||.|. |.|||.+..|++ |.|..++... ...++.-|.
T Consensus 45 a~fylGKrvayvykak~~~~g~k~R~iwGKVtR~HGns--------GvVrAkF~~nLP~kA~G~~Vr 103 (111)
T 3iz5_j 45 VGWYAGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHGNS--------GVVRAKFRSNLPPTSMGKKVR 103 (111)
T ss_dssp HHTTSCCCCEECCCCCSSSCCCCSCCEECEEEEESSSS--------SCEEEECSSCCSTTCCSSCBC
T ss_pred HHhhcCcEEEEEEeccccCCCceEEEEEEEEEeeeCCC--------CEEEEEeCCCCChHHcCCEEE
Confidence 3457788774 478888888765 5677777554 233454443
No 58
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=36.80 E-value=71 Score=19.42 Aligned_cols=49 Identities=14% Similarity=-0.021 Sum_probs=31.3
Q ss_pred CCeEEEEEEEeecc---------CC---e--EEEEeCCCCEEEEEccCC-C---CCCCCEEEEEEEEC
Q 033976 20 GRRIRTVIQVIQSD---------GG---G--VTGKSTDGHQLVVKGPQP-G---FPLTTFVEVIGIAD 69 (107)
Q Consensus 20 Gk~VrlvGkV~~~~---------g~---~--~~~~s~D~g~V~v~l~~~-~---~~~~~~vEViG~V~ 69 (107)
|..|.+.|+|.+.. |. . +++.. +-|.|.+.+=.+ . ...+..|+|.|+|.
T Consensus 11 g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~D-eTG~I~~tlW~~~~~~~i~~Gdvv~i~g~v~ 77 (97)
T 3e0e_A 11 NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKD-DTGSIRGTLWNELADFEVKKGDIAEVSGYVK 77 (97)
T ss_dssp TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEE-TTEEEEEEEEGGGGGCCCCTTCEEEEEEEEE
T ss_pred CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC-CCCcEEEEEECCccccccCCCCEEEEEEEEE
Confidence 47999999999553 21 1 22222 335788875443 1 23599999999985
No 59
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=35.41 E-value=60 Score=23.04 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCCeEEEEEEEeecc--C-CeEEEEeCCCCEEEEEccCCCCCCCCEEEEEEEECCCCCEEE
Q 033976 19 VGRRIRTVIQVIQSD--G-GGVTGKSTDGHQLVVKGPQPGFPLTTFVEVIGIADTDRSIRA 76 (107)
Q Consensus 19 ~Gk~VrlvGkV~~~~--g-~~~~~~s~D~g~V~v~l~~~~~~~~~~vEViG~V~~~~si~~ 76 (107)
.|+.|+++-+-..+. . ..+.-.-.-|..|.|++.+ ++ .|.|+|.++++|+.
T Consensus 143 rG~~V~i~~~~~g~~i~~~G~AL~~G~~Gd~IrVr~~S-----gk--iv~g~V~~~g~V~V 196 (219)
T 3tee_A 143 AGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTS-----GQ--IVSGTVDSDGNILI 196 (219)
T ss_dssp TTCEEEEEEECSSCEEEEEEEECSCBCTTSEEEEEETT-----SC--EEEEEECTTSCEEE
T ss_pred CCCEEEEEEecCCEEEEEEEEEccccCCCCEEEEECCC-----CC--EEEEEEecCCEEEE
Confidence 477777765443111 0 0111123345667776421 22 46777777777663
No 60
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=35.22 E-value=66 Score=21.74 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=24.4
Q ss_pred EEEEEEeecc-CCeEEEEeCCCCEEEEEccC
Q 033976 24 RTVIQVIQSD-GGGVTGKSTDGHQLVVKGPQ 53 (107)
Q Consensus 24 rlvGkV~~~~-g~~~~~~s~D~g~V~v~l~~ 53 (107)
-+.|+|...- +..+.++|.||.++.++++.
T Consensus 32 e~~g~V~e~lgn~~f~V~l~nG~~~La~I~G 62 (143)
T 1d7q_A 32 QEYAQVIKMLGNGRLEAMCFDGVKRLCHIRG 62 (143)
T ss_dssp EEEEEEEEECSSSEEEEEETTTEEEEEECCS
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEecc
Confidence 3789999664 46799999999999999854
No 61
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=34.67 E-value=26 Score=21.49 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=29.9
Q ss_pred CCeEEEEEEEeecc-CCeEEEEeCCCCEEEEEccCC--C---CCCCCEEEEEEEECC
Q 033976 20 GRRIRTVIQVIQSD-GGGVTGKSTDGHQLVVKGPQP--G---FPLTTFVEVIGIADT 70 (107)
Q Consensus 20 Gk~VrlvGkV~~~~-g~~~~~~s~D~g~V~v~l~~~--~---~~~~~~vEViG~V~~ 70 (107)
|+.+.-+|++.+.. .+.+.+++. . .-.++.+ . ...++.+||.|-|+.
T Consensus 5 ~~~mk~lG~~~h~~~~g~lV~k~~--~--~P~~na~Vy~e~~~~IGkV~dIfGPv~~ 57 (82)
T 2ey4_C 5 GEKMKRLGKVLHYAKQGFLIVRTN--W--VPSLNDRVVDKRLQFVGIVKDVFGPVKM 57 (82)
T ss_dssp ---CBCCCCEEEEETTTEEEEECS--S--CCCTTCEEECTTCCCCEEEEEEEEESSS
T ss_pred cceeEEeEEEEEEcCCCCEEEEeC--C--CCCCCCEeEcCCCCEeEEEEEEECCCCC
Confidence 56777889999876 667777864 1 1122222 1 345999999999975
No 62
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=33.41 E-value=71 Score=19.30 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=21.1
Q ss_pred eEEEEEEEeeccCCeEEEEeCCCCEEEE
Q 033976 22 RIRTVIQVIQSDGGGVTGKSTDGHQLVV 49 (107)
Q Consensus 22 ~VrlvGkV~~~~g~~~~~~s~D~g~V~v 49 (107)
-++|.|+|...|.-++.+++ +|++.-|
T Consensus 29 G~~l~G~I~~fD~f~VlL~~-~g~~qLI 55 (77)
T 1kq1_A 29 GFQMKGVIEEYDKYVVSLNS-QGKQHLI 55 (77)
T ss_dssp SCEEEEEEEEECSSEEEEEE-TTEEEEE
T ss_pred CCEEEEEEEEECCcEEEEEE-CCeeEEE
Confidence 35789999999999998887 5655433
No 63
>3qoo_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, hot-DOG superfamily; 1.25A {Thermanaerovibrio acidaminovorans}
Probab=32.92 E-value=80 Score=20.80 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=29.3
Q ss_pred eeehhhhh-ccCCCeEEEEEEEeeccCCeEE--EEeCCCCEE
Q 033976 9 FVNGGLMR-MYVGRRIRTVIQVIQSDGGGVT--GKSTDGHQL 47 (107)
Q Consensus 9 RVn~~~L~-~~~Gk~VrlvGkV~~~~g~~~~--~~s~D~g~V 47 (107)
.+|-++|+ -.+|.+|++..++.+++|+.++ +++.|++..
T Consensus 70 ~v~v~Hlapt~~G~~V~~~a~v~~v~gr~v~f~v~a~d~~~~ 111 (138)
T 3qoo_A 70 RSEVHNLAPAVLGDDVTFTVTVDRVEGNRVVLSMKADDPHGP 111 (138)
T ss_dssp EEEEEECSCCBTTCEEEEEEEEEEEETTEEEEEEEEEETTEE
T ss_pred EEEEEEcCCCCCCCEEEEEEEEEEEcCCEEEEEEEEEECCeE
Confidence 56666774 4899999999999999998644 455665554
No 64
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens} SCOP: b.29.1.3 PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A* 1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A* 3aya_A* 3ayd_A* 3aye_A*
Probab=32.85 E-value=48 Score=21.63 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=25.3
Q ss_pred cCCCeEEEEEEEeeccCCeEEEEeCCCCEEEEEccC
Q 033976 18 YVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQ 53 (107)
Q Consensus 18 ~~Gk~VrlvGkV~~~~g~~~~~~s~D~g~V~v~l~~ 53 (107)
..|+.++|.|++.. +.+.+.+.-..|..|-.+++.
T Consensus 15 ~~G~~i~I~G~v~~-~a~rF~Inl~~g~dialHfnp 49 (138)
T 3zsj_A 15 VPRMLITILGTVKP-NANRIALDFQRGNDVAFHFNP 49 (138)
T ss_dssp CTTEEEEEEEEECT-TCCBEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEEEECC-CCCEEEEEeccCCCEEEEEEe
Confidence 46999999999975 455666654445788888854
No 65
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=32.61 E-value=23 Score=26.14 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=35.3
Q ss_pred EEEeeccCCeEEEEeCCCCEEEEEccCCC--CCCCCEEEEEEEECC
Q 033976 27 IQVIQSDGGGVTGKSTDGHQLVVKGPQPG--FPLTTFVEVIGIADT 70 (107)
Q Consensus 27 GkV~~~~g~~~~~~s~D~g~V~v~l~~~~--~~~~~~vEViG~V~~ 70 (107)
|++....|..+++..-|++.++|+|++.. .......=.||.|..
T Consensus 117 g~laRsAGt~A~ii~ke~~~~~vrLPSGe~r~v~~~crAtIG~Vsn 162 (240)
T 1vq8_A 117 GKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVVAG 162 (240)
T ss_dssp CCBSCSTTCCEEEEECCSSCEEEECTTSCEEEECTTCEEEESCBTT
T ss_pred ceEEEeCCCeEEEEEecCCEEEEECCCCCEEEEechheeeEEEecC
Confidence 66677889999999999999999997763 234777888898864
No 66
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=32.06 E-value=39 Score=20.16 Aligned_cols=15 Identities=0% Similarity=-0.181 Sum_probs=11.9
Q ss_pred hhhhhccCCCeEEEE
Q 033976 12 GGLMRMYVGRRIRTV 26 (107)
Q Consensus 12 ~~~L~~~~Gk~Vrlv 26 (107)
-+.|.++.|++|++.
T Consensus 17 ~~~L~~~~~~~V~V~ 31 (83)
T 1mgq_A 17 LDALGNSLNSPVIIK 31 (83)
T ss_dssp THHHHHTTTSEEEEE
T ss_pred HHHHHHhCCCEEEEE
Confidence 468899999988754
No 67
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A*
Probab=31.65 E-value=72 Score=20.74 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=24.8
Q ss_pred cCCCeEEEEEEEeeccCCeEEEEeCCCCEEEEEccC
Q 033976 18 YVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQ 53 (107)
Q Consensus 18 ~~Gk~VrlvGkV~~~~g~~~~~~s~D~g~V~v~l~~ 53 (107)
..|+.+.|.|++... .+.+.+....|..|-.+++.
T Consensus 19 ~~G~~i~I~G~v~~~-~~~F~Inl~~~~dialHfnp 53 (138)
T 3nv1_A 19 YPSKSILLSGTVLPS-AQRFHINLCSGNHIAFHLNP 53 (138)
T ss_dssp CTTCEEEEEEEECTT-CCBEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEEEECCC-CCEEEEEcCcCCCEEEEEEE
Confidence 479999999999643 44565554445588888854
No 68
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=31.41 E-value=28 Score=26.19 Aligned_cols=44 Identities=9% Similarity=0.192 Sum_probs=35.2
Q ss_pred EEEeeccCCeEEEEeCCCCEEEEEccCCC--CCCCCEEEEEEEECC
Q 033976 27 IQVIQSDGGGVTGKSTDGHQLVVKGPQPG--FPLTTFVEVIGIADT 70 (107)
Q Consensus 27 GkV~~~~g~~~~~~s~D~g~V~v~l~~~~--~~~~~~vEViG~V~~ 70 (107)
|++....|..+++.+-+++.++|+|++.. .......=.||.|..
T Consensus 153 g~laRsAGt~A~ii~k~~~~~~vrLPSGe~r~i~~~c~AtIG~Vsn 198 (276)
T 3v2d_D 153 AKLARAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVGAVGN 198 (276)
T ss_dssp EEESCSTTCCEEEEEEETTEEEEECTTSCEEEEETTCEEEESCBSC
T ss_pred ceEEEeCCCeEEEEEecCCEEEEECCCCCeEEEcccCeEEEEeecC
Confidence 77788899999999888999999997763 223777788888864
No 69
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=30.30 E-value=1.7e+02 Score=22.23 Aligned_cols=41 Identities=17% Similarity=-0.070 Sum_probs=32.3
Q ss_pred EEEEEeeccCCeEEEEeCCCCEEEEEccCC-C-CCCCCEEEEE
Q 033976 25 TVIQVIQSDGGGVTGKSTDGHQLVVKGPQP-G-FPLTTFVEVI 65 (107)
Q Consensus 25 lvGkV~~~~g~~~~~~s~D~g~V~v~l~~~-~-~~~~~~vEVi 65 (107)
..|+|.+..+..+.+.+.+|..+.+..... . ...+.||++.
T Consensus 48 ~~g~Vi~~~~~~~~v~~~~g~~~~~~~r~~~~~~~vGD~V~~~ 90 (358)
T 2rcn_A 48 AEGIVISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWR 90 (358)
T ss_dssp EEEEEEEEETTEEEEEETTSCEEEEEECTTCCCCCBTCEEEEE
T ss_pred ceEEEEEEECCEEEEEeCCCcEEEEEecCCCCCCCCCcEEEEE
Confidence 369999999999989988887788887554 2 2359999985
No 70
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=30.19 E-value=55 Score=18.97 Aligned_cols=15 Identities=0% Similarity=-0.102 Sum_probs=11.9
Q ss_pred hhhhhccCCCeEEEE
Q 033976 12 GGLMRMYVGRRIRTV 26 (107)
Q Consensus 12 ~~~L~~~~Gk~Vrlv 26 (107)
.+.|.+++||+|++.
T Consensus 6 ~~~L~~~~~~~V~V~ 20 (77)
T 1i4k_A 6 LDVLNRSLKSPVIVR 20 (77)
T ss_dssp HHHHHTTTTSEEEEE
T ss_pred HHHHHHhCCCEEEEE
Confidence 367899999998854
No 71
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar binding, sugar binding protein, beta-galactoside binding lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A {Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A* 1ulf_A* 1ulg_A* 1uld_A*
Probab=29.43 E-value=32 Score=23.05 Aligned_cols=36 Identities=8% Similarity=-0.026 Sum_probs=24.8
Q ss_pred cCCCeEEEEEEEeeccCCeEEEEeCCCC-EEEEEccC
Q 033976 18 YVGRRIRTVIQVIQSDGGGVTGKSTDGH-QLVVKGPQ 53 (107)
Q Consensus 18 ~~Gk~VrlvGkV~~~~g~~~~~~s~D~g-~V~v~l~~ 53 (107)
..|+.++|.|++...+.+.+.+.-..|. .|-.+++.
T Consensus 18 ~~G~~i~I~G~~~~~~a~rF~INl~~g~~dialHfnp 54 (150)
T 2wkk_A 18 KPESVAAIRSSAFNSKGGTTVFNFLSAGENILLHISI 54 (150)
T ss_dssp CTTCEEEEECSCCCTTCCCEEEEEECTTCCEEEEEEE
T ss_pred cCCCEEEEEEEECCCCCCEEEEEEecCCCCEEEEEee
Confidence 3699999999876666666666544333 67777754
No 72
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ...
Probab=28.87 E-value=22 Score=26.70 Aligned_cols=44 Identities=16% Similarity=0.056 Sum_probs=34.2
Q ss_pred EEEeeccCCeEEEEeCCCCEEEEEccCCC--CCCCCEEEEEEEECC
Q 033976 27 IQVIQSDGGGVTGKSTDGHQLVVKGPQPG--FPLTTFVEVIGIADT 70 (107)
Q Consensus 27 GkV~~~~g~~~~~~s~D~g~V~v~l~~~~--~~~~~~vEViG~V~~ 70 (107)
|++....|..+++..-|++.++|+|++.. .......=.||.|..
T Consensus 151 g~laRsAGt~A~ii~k~~~~~~vrLPSGe~r~i~~~c~ATIG~Vsn 196 (271)
T 3r8s_C 151 GQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGN 196 (271)
T ss_dssp CCSCCSTTCCEEEEECSTTEEEEECTTSCEEEEETTCEEEESCBSC
T ss_pred ceEEEeCCCeEEEEEecCCEEEEECCCCCeEEEcccCeEEEEeecC
Confidence 55567788999999999999999997763 223777888888864
No 73
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=28.22 E-value=63 Score=18.64 Aligned_cols=15 Identities=0% Similarity=0.120 Sum_probs=11.8
Q ss_pred hhhhhccCCCeEEEE
Q 033976 12 GGLMRMYVGRRIRTV 26 (107)
Q Consensus 12 ~~~L~~~~Gk~Vrlv 26 (107)
.+.|.+++||+|++.
T Consensus 6 ~~~L~~~~~~~V~V~ 20 (75)
T 1h64_1 6 LDVIHRSLDKDVLVI 20 (75)
T ss_dssp HHHHHTTTTSEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 467899999998753
No 74
>2cwz_A Thioesterase family protein; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.85A {Thermus thermophilus} SCOP: d.38.1.7
Probab=28.16 E-value=67 Score=20.78 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=24.9
Q ss_pred eeeehhhh-hccCCCeEEEEEEEeeccCCeEEEE
Q 033976 8 VFVNGGLM-RMYVGRRIRTVIQVIQSDGGGVTGK 40 (107)
Q Consensus 8 pRVn~~~L-~~~~Gk~VrlvGkV~~~~g~~~~~~ 40 (107)
-.+|.++| +-..|.+|++..++.+.++..++.+
T Consensus 64 ~~i~~~hl~pv~~G~~V~a~a~~~~~~~~~~~~~ 97 (141)
T 2cwz_A 64 SYVEARHLASALPGMRVRVVARHEKTEGNRVYAR 97 (141)
T ss_dssp EEEEEEECSCCCTTCEEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEcccCCCCCEEEEEEEEEEECCCEEEEE
Confidence 46777777 4467999999999998888765544
No 75
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=27.86 E-value=1.1e+02 Score=18.66 Aligned_cols=25 Identities=20% Similarity=-0.024 Sum_probs=20.4
Q ss_pred EEEEEEEeeccCCeEEEEeCCCCEEEE
Q 033976 23 IRTVIQVIQSDGGGVTGKSTDGHQLVV 49 (107)
Q Consensus 23 VrlvGkV~~~~g~~~~~~s~D~g~V~v 49 (107)
++|.|+|...|.-++.++ +|++--|
T Consensus 31 ~~L~G~I~~fD~f~VlL~--~g~~qLI 55 (79)
T 3sb2_A 31 IKLQGHVESFDQYVVLLR--NTVTQMV 55 (79)
T ss_dssp CEEEEEEEEECSSEEEEE--SSSEEEE
T ss_pred CEEEEEEEEECCcEEEEE--CCceEEE
Confidence 678999999999998886 6776544
No 76
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=27.47 E-value=52 Score=20.84 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=35.5
Q ss_pred EeeccCCeEEEEeCCCCEEEEEccCC--CCCCCCEEEEEEEECCCCCEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 033976 29 VIQSDGGGVTGKSTDGHQLVVKGPQP--GFPLTTFVEVIGIADTDRSIRAEIWNNFGNTFDTQSYNQLCQLAN 99 (107)
Q Consensus 29 V~~~~g~~~~~~s~D~g~V~v~l~~~--~~~~~~~vEViG~V~~~~si~~~~~~~~g~~fD~~~yn~lv~l~~ 99 (107)
....+...++++|+||....|.-.-- +..+...+|=.|--..+ ....++|. +++-....++|++.+
T Consensus 11 ~~~~~~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~----~~~~Iplp-nV~s~iL~kVieyc~ 78 (112)
T 1vcb_B 11 CEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAEN----ETNEVNFR-EIPSHVLSKVCMYFT 78 (112)
T ss_dssp ------CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC------------CEEECS-SCCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccc----cCCceeCC-CCCHHHHHHHHHHHH
Confidence 35556788999999999999965322 21112222211210000 01246665 899999999999985
No 77
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Probab=27.16 E-value=98 Score=22.70 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=23.2
Q ss_pred CCCeEEEEEEEeeccCCeEEEEeCCCCEEEEEc
Q 033976 19 VGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKG 51 (107)
Q Consensus 19 ~Gk~VrlvGkV~~~~g~~~~~~s~D~g~V~v~l 51 (107)
.|....++|+|..-++..+.+.+.+|++..+..
T Consensus 296 ~g~~~~~IG~v~~~~~~~v~i~~~~g~~~~~~~ 328 (338)
T 2z1e_A 296 KGRNAAIIGEVIADYRGKVLLETGIGGKRFMEP 328 (338)
T ss_dssp TTTTCEEEEEEESSSTTCEEEECTTSCEEECCC
T ss_pred CCCCeEEEEEEEeCCCCeEEEEecCCCEEECCC
Confidence 478899999998533235778888888754444
No 78
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=26.87 E-value=84 Score=25.17 Aligned_cols=32 Identities=9% Similarity=-0.062 Sum_probs=24.5
Q ss_pred CCeEEEEEEEeec-cCCeEEEEeC-CCCEEEEEccC
Q 033976 20 GRRIRTVIQVIQS-DGGGVTGKST-DGHQLVVKGPQ 53 (107)
Q Consensus 20 Gk~VrlvGkV~~~-~g~~~~~~s~-D~g~V~v~l~~ 53 (107)
|+ ++-|+|.++ ||+++.+... +|..++|.|.-
T Consensus 206 ~~--~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~G 239 (570)
T 3bdl_A 206 AG--RSEAVVEYVFSGSRLKLYLPKETCLITFLLAG 239 (570)
T ss_dssp TC--EEEEEEEEESSSSEEEEEETTTTEEEEEEESS
T ss_pred CC--eeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEE
Confidence 55 455888875 9999999875 67788998854
No 79
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=26.62 E-value=83 Score=22.54 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=23.6
Q ss_pred CCCeEEEEEEEeec----c-C-CeEEEEeCCCCEEEEEcc
Q 033976 19 VGRRIRTVIQVIQS----D-G-GGVTGKSTDGHQLVVKGP 52 (107)
Q Consensus 19 ~Gk~VrlvGkV~~~----~-g-~~~~~~s~D~g~V~v~l~ 52 (107)
.|.++.+-|+|... . + .+++++|. +|.++|-..
T Consensus 174 t~~~~~i~G~v~~~~~~~~~~~~s~~vet~-~g~~~VGG~ 212 (233)
T 2f5t_X 174 SGRLETLTGRVVGYTLSLREAVNNIHLETE-NGVVKVGGM 212 (233)
T ss_dssp TCCEEEEEEEEEEEEEEGGGTEEEEEEEET-TEEEEEECT
T ss_pred CCCeEEEEEEEEEEEEecCceeEEEEEEeC-CeEEEECCc
Confidence 57789999999933 2 2 36888885 567888663
No 80
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Probab=26.13 E-value=1.4e+02 Score=19.48 Aligned_cols=52 Identities=10% Similarity=0.020 Sum_probs=31.1
Q ss_pred CCCEEEEEccCC-C---CCCCCEEEEEEEECCCCCEEEEE-EEeCCCCCCHHHHHHHHHHHh
Q 033976 43 DGHQLVVKGPQP-G---FPLTTFVEVIGIADTDRSIRAEI-WNNFGNTFDTQSYNQLCQLAN 99 (107)
Q Consensus 43 D~g~V~v~l~~~-~---~~~~~~vEViG~V~~~~si~~~~-~~~~g~~fD~~~yn~lv~l~~ 99 (107)
+-|.++++.... . .-.++|+||. ++ .+.... ....++++|.+...+..+-+.
T Consensus 46 ~~G~v~i~~~~g~~~~~~v~gGf~ev~----~~-~vtIla~~A~~~~diD~~~a~~a~~~Ae 102 (138)
T 1aqt_A 46 KPGMIRIVKQHGHEEFIYLSGGILEVQ----PG-NVTVLADTAIRGQDLDEARAMEAKRKAE 102 (138)
T ss_dssp CSEEEEEEETTTEEEEEEESSEEEEEE----TT-EEEEEESSEEEGGGCCHHHHHHHHHHHH
T ss_pred cceEEEEEECCCcEEEEEEeCcEEEEE----CC-EEEEEEeeEEEhhhCCHHHHHHHHHHHH
Confidence 346666654222 1 1237888874 22 333332 355678999999998887764
No 81
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.90 E-value=26 Score=25.78 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=33.5
Q ss_pred EEEeeccCCeEEEEeCCCCEEEEEccCCC--CCCCCEEEEEEEECC
Q 033976 27 IQVIQSDGGGVTGKSTDGHQLVVKGPQPG--FPLTTFVEVIGIADT 70 (107)
Q Consensus 27 GkV~~~~g~~~~~~s~D~g~V~v~l~~~~--~~~~~~vEViG~V~~ 70 (107)
|++....|..+++..-+++.++|+|++.. .......=.||.|..
T Consensus 119 g~laRsAGt~A~ii~k~~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn 164 (239)
T 3j21_B 119 GKYVRAGGTYALVVSREPDKVIVQLPSGELKAFNPMCRATIGVVAG 164 (239)
T ss_dssp CCSCCSTTCCEEEEEECSSCEEEECTTSCEEEECTTCEEEESCBSC
T ss_pred eeEEEecCCeEEEEEecCCEEEEEcCCCCEEEEeccCeEEEeeccC
Confidence 45556788888998888999999997763 224777888898864
No 82
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=24.65 E-value=1.2e+02 Score=18.27 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=24.2
Q ss_pred EEEEEEee-ccCCeEEEEeCCCCEEEEEccC
Q 033976 24 RTVIQVIQ-SDGGGVTGKSTDGHQLVVKGPQ 53 (107)
Q Consensus 24 rlvGkV~~-~~g~~~~~~s~D~g~V~v~l~~ 53 (107)
.++|.|.. .|.+.+.++++.|++.-|...+
T Consensus 19 ~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~ 49 (85)
T 3h43_A 19 LIVGTVVDKVGERKVVVKSSTGPSFLVNVSH 49 (85)
T ss_dssp EEEEEEEEEEETTEEEEEETTSSEEEEEBCT
T ss_pred ceEEEEEEEcCCCEEEEEeCCCCeEEEEecC
Confidence 46788774 4788999999999999998855
No 83
>1vla_A Hydroperoxide resistance protein OSMC; TM0919, structural GE JCSG, protein structure initiative, PSI, joint center for S genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: d.227.1.2
Probab=24.38 E-value=1.5e+02 Score=19.28 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=27.9
Q ss_pred EEEEEEECCCC-----CEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 033976 62 VEVIGIADTDR-----SIRAEIWNNFGNTFDTQSYNQLCQLAN 99 (107)
Q Consensus 62 vEViG~V~~~~-----si~~~~~~~~g~~fD~~~yn~lv~l~~ 99 (107)
+++.|..+++. .|+..-.+.+++++|.+...++++.++
T Consensus 84 v~v~~~~~~~~~~~~~~I~~~~~v~~~~~~~~e~~~~l~~~A~ 126 (150)
T 1vla_A 84 IEIEYERTEEHPRIFTKVHLKYIFKFDGEPPKDKVEKAVQLSQ 126 (150)
T ss_dssp EEEEEEECSSSSCCEEEEEEEEEEEESSSCCHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCceEEEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 78888875432 255555566677999999999999974
No 84
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=23.99 E-value=67 Score=18.90 Aligned_cols=15 Identities=0% Similarity=-0.062 Sum_probs=12.3
Q ss_pred hhhhhccCCCeEEEE
Q 033976 12 GGLMRMYVGRRIRTV 26 (107)
Q Consensus 12 ~~~L~~~~Gk~Vrlv 26 (107)
.+.|.+++|++|++.
T Consensus 11 ~~~L~~~~~~~V~V~ 25 (81)
T 1th7_A 11 HKVLAESLNNLVLVK 25 (81)
T ss_dssp HHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCeEEEE
Confidence 478999999998753
No 85
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.77 E-value=1.6e+02 Score=19.44 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=24.8
Q ss_pred cCCCeEEEEEEEeeccCCeEEE--EeCCCCEEEEEccCC
Q 033976 18 YVGRRIRTVIQVIQSDGGGVTG--KSTDGHQLVVKGPQP 54 (107)
Q Consensus 18 ~~Gk~VrlvGkV~~~~g~~~~~--~s~D~g~V~v~l~~~ 54 (107)
..|+.++|.|++..- .+.+.+ .+.....|-++++.-
T Consensus 28 ~~G~~i~I~G~v~~~-~~rF~Inl~~g~~~dialHfnpR 65 (155)
T 2yro_A 28 GPGRTVVVKGEVNAN-AKSFNVDLLAGKSKDIALHLNPR 65 (155)
T ss_dssp CTTCEEEEEEEECTT-CCCEEEEEEETTTTEEEEEEECC
T ss_pred ccCCEEEEEEEECCC-CCEEEEEEecCCCCCEEEEEEEE
Confidence 479999999999753 334444 555435888888643
No 86
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=23.77 E-value=68 Score=19.68 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=35.5
Q ss_pred CCeEEEEeCCCCEEEEEccCC--CCCCCCEEEEEEEECCCCCEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 033976 34 GGGVTGKSTDGHQLVVKGPQP--GFPLTTFVEVIGIADTDRSIRAEIWNNFGNTFDTQSYNQLCQLAN 99 (107)
Q Consensus 34 g~~~~~~s~D~g~V~v~l~~~--~~~~~~~vEViG~V~~~~si~~~~~~~~g~~fD~~~yn~lv~l~~ 99 (107)
...++++|+||....|.-.-- +..+...+|= |- +++.. .++|. +++-....++|++..
T Consensus 3 ~~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~-~~-e~~~~-----~Iplp-~V~~~iL~kVieyc~ 62 (99)
T 1hv2_A 3 QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEG-PF-RESKG-----RIELK-QFDSHILEKAVEYLN 62 (99)
T ss_dssp CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHS-ST-TTCTT-----EEEET-TSCHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCEEEECHHHHHHhHHHHHHHhc-cc-ccCCC-----ceecC-CcCHHHHHHHHHHHH
Confidence 567899999999999965322 2111122221 21 22111 35665 699999999999985
No 87
>2kyw_A Adhesion exoprotein; structural genomics, northeast structural genomics consortiu GFT, PSI-2, protein structure initiative; NMR {Pediococcus pentosaceus}
Probab=23.29 E-value=76 Score=19.49 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.0
Q ss_pred EEeCCCCEEEEEccCC
Q 033976 39 GKSTDGHQLVVKGPQP 54 (107)
Q Consensus 39 ~~s~D~g~V~v~l~~~ 54 (107)
+-++||++|+|.+..+
T Consensus 52 ~~~~~~~~~~~~~~~~ 67 (87)
T 2kyw_A 52 VVSSDGKTVTITFAAD 67 (87)
T ss_dssp EECTTSSEEEEECCSS
T ss_pred EEecCCCEEEEEEeec
Confidence 3588999999999765
No 88
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=23.26 E-value=59 Score=19.55 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=11.4
Q ss_pred hhhhccCCCeEEEE
Q 033976 13 GLMRMYVGRRIRTV 26 (107)
Q Consensus 13 ~~L~~~~Gk~Vrlv 26 (107)
+.|.+++||+|++.
T Consensus 7 ~~L~~~~~k~V~V~ 20 (91)
T 1d3b_B 7 SKMLQHIDYRMRCI 20 (91)
T ss_dssp CCCGGGTTSEEEEE
T ss_pred HHHHHHcCCcEEEE
Confidence 57889999999854
No 89
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.57 E-value=1.5e+02 Score=18.59 Aligned_cols=30 Identities=33% Similarity=0.316 Sum_probs=23.6
Q ss_pred EEEEEEee-ccCCeEEEEeCCCCEEEEEccC
Q 033976 24 RTVIQVIQ-SDGGGVTGKSTDGHQLVVKGPQ 53 (107)
Q Consensus 24 rlvGkV~~-~~g~~~~~~s~D~g~V~v~l~~ 53 (107)
.++|.|.. ++.+.+.++++.|...-|...+
T Consensus 38 ~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~ 68 (109)
T 2wg5_A 38 LLVGVVSDILEDGRVVVKSSTGPKFVVNTSQ 68 (109)
T ss_dssp EEEEEEEEECTTSCEEEEETTSCEEEECBCT
T ss_pred ceEEEEEEEecCCEEEEEeCCCCEEEEEccc
Confidence 57788884 4677899999999998887754
No 90
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=22.43 E-value=1.1e+02 Score=20.02 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=31.4
Q ss_pred CeEEEEEEEeeccCCeEEEEeCCCCEEEEEccCC--CC---CCCCEEEEEEEEC
Q 033976 21 RRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQP--GF---PLTTFVEVIGIAD 69 (107)
Q Consensus 21 k~VrlvGkV~~~~g~~~~~~s~D~g~V~v~l~~~--~~---~~~~~vEViG~V~ 69 (107)
..|.-+|++.+.-.+.+..+++.. .|. .+|.+ .+ ..++..||-|-++
T Consensus 25 ~~v~elG~f~H~ceg~lV~k~~~~-~VP-~fNapVy~enK~~IGKVdEIFGPin 76 (114)
T 3u28_C 25 DTVLEMGAFLHPCEGDIVCRSINT-KIP-YFNAPIYLENKTQVGKVDEILGPLN 76 (114)
T ss_dssp SCEEEEEEEEEEETTEEEEEECSS-SEE-CTTCEEECTTCCEEEEEEEEESBTT
T ss_pred HHHheeeeEEEEeCCeEEEEeCCC-CCC-CCCCEeEccCCccceeEeEEeCCCC
Confidence 458899999988777888888743 333 56655 22 2366666666654
No 91
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=22.38 E-value=88 Score=18.22 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=10.9
Q ss_pred hhhhhccCCCeEEE
Q 033976 12 GGLMRMYVGRRIRT 25 (107)
Q Consensus 12 ~~~L~~~~Gk~Vrl 25 (107)
-+.|.++.|++|++
T Consensus 7 ~~~L~~~~g~~V~V 20 (75)
T 1d3b_A 7 IKVLHEAEGHIVTC 20 (75)
T ss_dssp HHHHHHTTTSEEEE
T ss_pred HHHHHHhCCCEEEE
Confidence 36788899998874
No 92
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=22.34 E-value=1e+02 Score=18.90 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=16.5
Q ss_pred hhhhhccCCCeEEE--------EEEEeeccC
Q 033976 12 GGLMRMYVGRRIRT--------VIQVIQSDG 34 (107)
Q Consensus 12 ~~~L~~~~Gk~Vrl--------vGkV~~~~g 34 (107)
...|.+++||+|++ .|++.++|.
T Consensus 12 ~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~ 42 (96)
T 3bw1_A 12 LDLLKLNLDERVYIKLRGARTLVGTLQAFDS 42 (96)
T ss_dssp HHHHGGGTTSEEEEEEGGGCEEEEEEEEECT
T ss_pred HHHHHHHCCCeEEEEECCCcEEEEEEEEECC
Confidence 46789999999975 455555554
No 93
>1qex_A Protein (bacteriophage T4 gene product 9 (GP9)); baseplate, oligomerization protein; HET: EPE; 2.30A {Enterobacteria phage T4} SCOP: b.32.1.1 PDB: 1pdp_A* 1s2e_A* 1tja_C 1zku_A*
Probab=22.02 E-value=1.2e+02 Score=22.86 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=25.5
Q ss_pred CCeEEEEeCCCCEEEEEccCCCCCCCCEEEEEEEECCCCCEE
Q 033976 34 GGGVTGKSTDGHQLVVKGPQPGFPLTTFVEVIGIADTDRSIR 75 (107)
Q Consensus 34 g~~~~~~s~D~g~V~v~l~~~~~~~~~~vEViG~V~~~~si~ 75 (107)
|+..-+.++ ++.|++.|+.. ..+.++++| +.++|+.
T Consensus 82 Gs~~diDTs-~g~I~v~LpkG--~~ge~~~~I---n~nGS~s 117 (288)
T 1qex_A 82 GTRHDIDTS-TVGVKVIIERG--ELGDCVEFI---NSNGSIS 117 (288)
T ss_dssp TCEEECCCS-SSCEEEEECCC--CTTCEEEEE---CTTCCCC
T ss_pred cceEEEEcC-CCcEEEEcCCC--CccCccEEE---eCCceec
Confidence 344445555 79999999665 678899998 6666655
No 94
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=21.37 E-value=47 Score=24.76 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=32.6
Q ss_pred EEEeeccCCeEEEEeC--CCCEEEEEccCCC--CCCCCEEEEEEEECC
Q 033976 27 IQVIQSDGGGVTGKST--DGHQLVVKGPQPG--FPLTTFVEVIGIADT 70 (107)
Q Consensus 27 GkV~~~~g~~~~~~s~--D~g~V~v~l~~~~--~~~~~~vEViG~V~~ 70 (107)
|++....|..+++.+- |++.++|+|++.. .......=.||.|..
T Consensus 124 g~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~CrATIG~Vsn 171 (261)
T 3iz5_B 124 GVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAG 171 (261)
T ss_dssp CCBSCSTTCCEEEEECSSCSSCEEEECTTSCEEEECTTCEEEESCBSS
T ss_pred ceEEEecCCeEEEEEeccCCCEEEEECCCCCEEEEecCCcEEEEEecC
Confidence 4455667888888776 4899999997763 234778888999864
No 95
>3dui_A Beta-galactoside-binding lectin; carbohydrate-binding proteins, galactosides, galectin, acetylation, sugar binding protein; 2.10A {Gallus gallus} SCOP: b.29.1.3
Probab=21.19 E-value=1.1e+02 Score=19.68 Aligned_cols=40 Identities=8% Similarity=-0.002 Sum_probs=25.5
Q ss_pred hhhhccCCCeEEEEEEEeeccCCeEEEEeCC-CCEEEEEccC
Q 033976 13 GLMRMYVGRRIRTVIQVIQSDGGGVTGKSTD-GHQLVVKGPQ 53 (107)
Q Consensus 13 ~~L~~~~Gk~VrlvGkV~~~~g~~~~~~s~D-~g~V~v~l~~ 53 (107)
..|+=..|+.+.|.|++..- .+.+.+.... ...|-.+++.
T Consensus 9 ~~~~l~~G~~i~I~G~v~~~-a~rF~Inl~~~~~dialHfnp 49 (135)
T 3dui_A 9 TNLGLKPGQRLTVKGIIAPN-AKSFVMNLGKDSTHLGLHFNP 49 (135)
T ss_dssp ECCCCCTTCCEEEEEEECTT-CCBEEEEEEEETTEEEEEEEE
T ss_pred EeCCCCCCCEEEEEEEECCC-CCEEEEEeccCCCCEEEEEEe
Confidence 34555689999999999743 3444443332 2577777743
No 96
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=20.97 E-value=1e+02 Score=18.07 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=11.8
Q ss_pred hhhhhccCCCeEEEE
Q 033976 12 GGLMRMYVGRRIRTV 26 (107)
Q Consensus 12 ~~~L~~~~Gk~Vrlv 26 (107)
-+.|.+++|++|++.
T Consensus 13 ~~~L~~~~~~~V~V~ 27 (81)
T 1i8f_A 13 GATLQDSIGKQVLVK 27 (81)
T ss_dssp HHHHHTTTTSEEEEE
T ss_pred HHHHHHHCCCeEEEE
Confidence 467899999998753
No 97
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=20.54 E-value=1.9e+02 Score=21.37 Aligned_cols=40 Identities=10% Similarity=-0.052 Sum_probs=30.4
Q ss_pred EEEEeeccCCeEEEEeCC---CCEEEEEccCCC------CCCCCEEEEE
Q 033976 26 VIQVIQSDGGGVTGKSTD---GHQLVVKGPQPG------FPLTTFVEVI 65 (107)
Q Consensus 26 vGkV~~~~g~~~~~~s~D---~g~V~v~l~~~~------~~~~~~vEVi 65 (107)
-|+|.+..++...+.+.| |+.+.+++...- ...+.||++.
T Consensus 12 ~g~vi~~~~~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~ 60 (307)
T 1t9h_A 12 EGKIIKALSGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQ 60 (307)
T ss_dssp EEEEEEEETTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEE
T ss_pred CeEEEEEECCEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEE
Confidence 489999999988898876 778888775431 2249999995
No 98
>1is3_A Congerin II; complex with lactose and MES, sugar binding protein; HET: LAT MES; 1.45A {Conger myriaster} SCOP: b.29.1.3 PDB: 1is4_A* 1is5_A 1is6_A* 1wld_A* 1wlw_A* 1wlc_A* 3ak0_A* 3ajz_A*
Probab=20.16 E-value=1.1e+02 Score=19.68 Aligned_cols=35 Identities=6% Similarity=-0.006 Sum_probs=23.5
Q ss_pred cCCCeEEEEEEEeeccCCeEEEEeCCC-CEEEEEccC
Q 033976 18 YVGRRIRTVIQVIQSDGGGVTGKSTDG-HQLVVKGPQ 53 (107)
Q Consensus 18 ~~Gk~VrlvGkV~~~~g~~~~~~s~D~-g~V~v~l~~ 53 (107)
..|+.++|.|++.. +.+.+.+.-..+ ..|-++++.
T Consensus 12 ~~G~~i~I~G~v~~-~~~rF~Inl~~~~~dialHfnp 47 (135)
T 1is3_A 12 KLGMYLTVGGVVNS-NATRFSINVGESTDSIAMHMDH 47 (135)
T ss_dssp ETTCCEEEEEEECT-TCCEEEEEEEEETTEEEEEEEE
T ss_pred ccCCEEEEEEEECC-CCCEEEEEeccCCCCEEEEEee
Confidence 47999999999965 445555533222 578777754
Done!