BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033978
MAKNVAQSPLERTSLASLDHKLAMAKRCSHEGVIAGAKAAVVATVATAIPTLASVRMLPW
ARANLNHTAQALIISTVAGAAYFIVADKTVLATARKNSFQQASNMEA

High Scoring Gene Products

Symbol, full name Information P value
AT5G25940 protein from Arabidopsis thaliana 1.3e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033978
        (107 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2180632 - symbol:AT5G25940 "AT5G25940" species...   177  1.3e-13   1


>TAIR|locus:2180632 [details] [associations]
            symbol:AT5G25940 "AT5G25940" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009723 "response to ethylene
            stimulus" evidence=RCA] GO:GO:0005739 EMBL:CP002688 EMBL:AF149413
            UniGene:At.30881 UniGene:At.66768 EMBL:BT006144 EMBL:BT008570
            EMBL:AK229683 IPI:IPI00540933 RefSeq:NP_197966.1 STRING:Q9XGZ3
            PRIDE:Q9XGZ3 EnsemblPlants:AT5G25940.1 GeneID:832663
            KEGG:ath:AT5G25940 TAIR:At5g25940 HOGENOM:HOG000241682
            InParanoid:Q9XGZ3 OMA:DINNCNG PhylomeDB:Q9XGZ3
            ProtClustDB:CLSN2721593 ArrayExpress:Q9XGZ3 Genevestigator:Q9XGZ3
            InterPro:IPR005050 Pfam:PF03386 ProDom:PD064786 Uniprot:Q9XGZ3
        Length = 115

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 39/94 (41%), Positives = 54/94 (57%)

Query:    15 LASLDH--KLAMAKRCSHEXXXXXXXXXXXXXXXXXXPTLASVRMLPWARANLNHTAQAL 72
             +AS D   K+  A+                       PT+A+VRM PWA+ANLN+TAQAL
Sbjct:    18 IASPDEIAKIHRAETSKQAGAIAGAKAAAVAAVASAIPTVAAVRMFPWAKANLNYTAQAL 77

Query:    73 IISTVAGAAYFIVADKTVLATARKNSFQQASNME 106
             IIS+ + AA+FI ADKT+L  AR+N+  Q   ++
Sbjct:    78 IISSASIAAFFITADKTILQGARRNTEAQLKKVQ 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.121   0.333    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      107        89   0.00091  102 3  10 22  0.41    29
                                                     29  0.50    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  121 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.29u 0.12s 9.41t   Elapsed:  00:00:01
  Total cpu time:  9.29u 0.12s 9.41t   Elapsed:  00:00:01
  Start:  Fri May 10 10:14:05 2013   End:  Fri May 10 10:14:06 2013

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