BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033979
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical
Ubiquitin-Conjugating Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical
Ubiquitin-Conjugating Enzyme, Loc55284
Length = 136
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 19 RLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
RLQKEL+ Q +PP G + V +++ +WI+++ GAPGTLY E F+L F YP
Sbjct: 26 RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 85
Query: 76 EAPQVI 81
++PQV+
Sbjct: 86 DSPQVM 91
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 7/75 (9%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A+ R+QKEL + NPP V +N++ WI++ G T+YANE ++L++ FP+ YP
Sbjct: 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66
Query: 75 MEAPQVINYTIIFFL 89
++ P I++FL
Sbjct: 67 LKPP------IVYFL 75
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
Length = 136
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 7/75 (9%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A+ R+QKEL + NPP V N++ WI++ G T+YANE +++++ FP++YP
Sbjct: 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80
Query: 75 MEAPQVINYTIIFFL 89
++ P I++FL
Sbjct: 81 LKPP------IVYFL 89
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+QKEL + Q +PPA + V D+L W + G P + Y F L V FP Y
Sbjct: 7 MALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P++ T I+ +NS
Sbjct: 67 PFKPPKIAFTTKIYHPNINS 86
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+QKEL + Q +PPA V D+L W + G P + Y F L V FP Y
Sbjct: 19 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 78
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P++ T I+ +NS
Sbjct: 79 PFKPPKIAFTTKIYHPNINS 98
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
Length = 153
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 14 KIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEH 72
++A R+QKEL + Q +PPA V D+L W + G P + Y F L V FP
Sbjct: 6 EMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD 65
Query: 73 YPMEAPQVINYTIIFFLVLNS 93
YP + P++ T I+ +NS
Sbjct: 66 YPFKPPKIAFTTKIYHPNINS 86
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+QKEL + Q +PPA V D+L W + G P + Y F L V FP Y
Sbjct: 3 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 62
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P++ T I+ +NS
Sbjct: 63 PFKPPKIAFTTKIYHPNINS 82
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 16 ASNRLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
++ R+QKEL E ++PP AG K DN+ W + G PG++Y F L + F
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDITFSP 60
Query: 72 HYPMEAPQVINYTIIFFLVLNS 93
YP + P+V T I+ +NS
Sbjct: 61 DYPFKPPKVTFRTRIYHCNINS 82
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 4 SSAPSRKALSKIASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANET 62
+ PS A RLQ+EL+ ++ G +DNL +W+ ++GA GT+Y +
Sbjct: 19 GAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLR 78
Query: 63 FELQVDFPEHYPMEAPQV 80
++L ++FP YP AP V
Sbjct: 79 YKLSLEFPSGYPYNAPTV 96
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 12 LSKIASNRLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQV 67
L ++ R+QKEL + ++PP AG K DN+ W + G PG++Y F L +
Sbjct: 45 LLSTSAKRIQKELADITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDI 101
Query: 68 DFPEHYPMEAPQVINYTIIFFLVLNSYSL 96
F YP + P+V T I+ +NS +
Sbjct: 102 TFTPEYPFKPPKVTFRTRIYHCNINSQGV 130
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
A+ +A R+QKEL + Q +PPA V D+L W + G + Y F L + F
Sbjct: 2 AMGSMALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHF 61
Query: 70 PEHYPMEAPQVINYTIIFFLVLNS 93
P YP + P+V T I+ +NS
Sbjct: 62 PTDYPFKPPKVAFTTKIYHPNINS 85
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
S +A R+QKEL + +PPA V D+L W + G P + Y F L + FP
Sbjct: 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPT 61
Query: 72 HYPMEAPQVINYTIIFFLVLNS 93
YP + P+V T I+ +NS
Sbjct: 62 DYPFKPPKVAFTTRIYHPNINS 83
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
+ +A R+QKEL E Q +PP V D++ W + G + Y F L V FP
Sbjct: 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPV 61
Query: 72 HYPMEAPQVINYTIIFFLVLN 92
YP +AP+V T ++ +N
Sbjct: 62 DYPFKAPRVTFMTKVYHPNIN 82
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 20 LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
L+++L E NP GF + D+ L RW + + G P TLY F+ + FP+ YP+
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 78 PQVINYTIIF 87
P++ T I+
Sbjct: 82 PKMKFITEIW 91
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
++S + RLQ+E +W+ + P GF K + +LQ+W + G GT +A +
Sbjct: 2 SMSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 61
Query: 65 LQVDFPEHYPMEAPQV 80
+ V++P YP + P+V
Sbjct: 62 ITVEYPNEYPSKPPKV 77
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
+S R+ KEL + + +PP V D+L W + G + YA F L + FP YP
Sbjct: 3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYP 62
Query: 75 MEAPQVINYTIIFFLVLNS 93
+ P++ T I+ +N+
Sbjct: 63 FKPPKISFTTKIYHPNINA 81
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF--KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
+SK A RL KEL + + P G K +N+ W + G P T YA+ F +++F
Sbjct: 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 70 PEHYPMEAPQV 80
P+ YP+ P++
Sbjct: 61 PKDYPLSPPKL 71
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell
Survival And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell
Survival And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell
Survival And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell
Survival And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S + RLQ+E +W+ + P GF K + +LQ+W + G GT +A + +
Sbjct: 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 66 QVDFPEHYPMEAPQV 80
V++P YP + P+V
Sbjct: 61 TVEYPNEYPSKPPKV 75
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 19 RLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
R+ KE PP G V +N + + I +NG GT Y T++L++ PE YPME
Sbjct: 5 RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 78 PQVINYTIIF 87
P+V T I+
Sbjct: 65 PKVRFLTKIY 74
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 19 RLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
R+ KE PP G V +N + + I +NG GT Y T++L++ PE YPME
Sbjct: 5 RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 78 PQVINYTIIF 87
P+V T I+
Sbjct: 65 PKVRFLTKIY 74
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
A+ +A R+ KEL + +PPA V D++ W + G + Y F L + F
Sbjct: 2 AMGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF 61
Query: 70 PEHYPMEAPQVINYTIIFFLVLNS 93
P YP + P+V T I+ +NS
Sbjct: 62 PTDYPFKPPKVAFTTRIYHPNINS 85
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA + V D++ W + G + Y F L + FP Y
Sbjct: 1 MALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P+V T I+ +NS
Sbjct: 61 PFKPPKVAFTTRIYHPAINS 80
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHKVTD------NLQRWIIEVNGAPGTLYANETFELQ 66
S + RLQ+E +W+ + P GF K +L W + + G P T + ++L
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 67 VDFPEHYPMEAPQV 80
+ FPE YP P+
Sbjct: 68 MAFPEEYPTRPPKC 81
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
AS R+ KEL + +PPA V D++ W + G + Y F L + FP YP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 75 MEAPQVINYTIIFFLVLNS 93
+ P+V T I+ +NS
Sbjct: 61 FKPPKVAFTTRIYHPNINS 79
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1
(uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And
Atp/mg
Length = 163
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ +EL + +PP+ V D+L W + G + YA F L + FP Y
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P+V T I+ +NS
Sbjct: 61 PFKPPKVNFTTRIYHPNINS 80
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
++ +A R+ KEL + +PPA V D++ W + G + Y F L + FP
Sbjct: 8 MNSMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 67
Query: 71 EHYPMEAPQVINYTIIFFLVLNS 93
YP + P+V T I+ +NS
Sbjct: 68 TDYPFKPPKVAFTTRIYHPNINS 90
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFP 70
+S A RL ++ Q +PP G ++N + +W + G GT + + TF+L ++F
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 71 EHYPMEAPQVINYTIIF 87
E YP + P V + +F
Sbjct: 61 EEYPNKPPTVRFLSKMF 77
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
++ +A R+ KEL + +PPA V D++ W + G + Y F L + FP
Sbjct: 8 MNSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 67
Query: 71 EHYPMEAPQVINYTIIFFLVLNS 93
YP + P+V T I+ +NS
Sbjct: 68 TDYPFKPPKVAFTTRIYHPNINS 90
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 9 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 68
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P+V T I+ +NS
Sbjct: 69 PFKPPKVAFTTRIYHPNINS 88
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P+V T I+ +NS
Sbjct: 61 PFKPPKVAFTTRIYHPNINS 80
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 20 LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
L+K+L + + P GF + D+ + +W + V G P TLY F+ +DFP YP +
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 78 PQV 80
P++
Sbjct: 68 PKM 70
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
+A R+ KEL + +PPA V D++ W + G + Y F L + FP
Sbjct: 17 GSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 76
Query: 72 HYPMEAPQVINYTIIFFLVLNS 93
YP + P+V T I+ +NS
Sbjct: 77 DYPFKPPKVAFTTRIYHPNINS 98
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
+A R+ KEL + +PPA V D++ W + G + Y F L + FP
Sbjct: 2 GSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 61
Query: 72 HYPMEAPQVINYTIIFFLVLNS 93
YP + P+V T I+ +NS
Sbjct: 62 DYPFKPPKVAFTTRIYHPNINS 83
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
+A R+ KEL + +PPA V D++ W + G + Y F L + FP
Sbjct: 1 GSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 60
Query: 72 HYPMEAPQVINYTIIFFLVLNS 93
YP + P+V T I+ +NS
Sbjct: 61 DYPFKPPKVAFTTRIYHPNINS 82
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P+V T I+ +NS
Sbjct: 63 PFKPPKVAFTTRIYHPNINS 82
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
+A R+ KEL + +PPA V D++ W + G + Y F L + FP
Sbjct: 17 GSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 76
Query: 72 HYPMEAPQVINYTIIFFLVLNS 93
YP + P+V T I+ +NS
Sbjct: 77 DYPFKPPKVAFTTRIYHPNINS 98
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b,
Wild-Type
Length = 149
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P+V T I+ +NS
Sbjct: 63 PFKPPKVAFTTRIYHPNINS 82
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P+V T I+ +NS
Sbjct: 63 PFKPPKVAFTTRIYHPNINS 82
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating
Enzyme Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P+V T I+ +NS
Sbjct: 61 PFKPPKVAFTTRIYHPNINS 80
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 17 SNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
++RL++EL PP G + D + ++ G T Y F+L+V PE YP
Sbjct: 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 76 EAPQVINYTIIFFLVLNS 93
E PQ+ T I+ ++S
Sbjct: 66 EPPQIRFLTPIYHPNIDS 83
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A R+ KEL + +PPA V D++ W + G + Y F L + FP YP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 75 MEAPQVINYTIIFFLVLNS 93
+ P+V T I+ +NS
Sbjct: 64 FKPPKVAFTTRIYHPNINS 82
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A R+ KEL + +PPA V D++ W + G + Y F L + FP YP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 75 MEAPQVINYTIIFFLVLNS 93
+ P+V T I+ +NS
Sbjct: 61 FKPPKVAFTTRIYHPNINS 79
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 5 SAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETF 63
+ PSR+ RL ++ + Q +PPAG T DN+ W + G T + + TF
Sbjct: 5 TTPSRR--------RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTF 56
Query: 64 ELQVDFPEHYPMEAPQVINYTIIF 87
+L ++F E YP + P V + +F
Sbjct: 57 KLSLEFTEEYPNKPPTVKFISKMF 80
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 5 SAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETF 63
+ PSR+ RL ++ + Q +PPAG T DN+ W + G T + + TF
Sbjct: 2 TTPSRR--------RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTF 53
Query: 64 ELQVDFPEHYPMEAPQVINYTIIF 87
+L ++F E YP + P V + +F
Sbjct: 54 KLSLEFTEEYPNKPPTVKFISKMF 77
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P+V T I+ +NS
Sbjct: 63 PFKPPKVAFTTRIYHPNINS 82
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFP 70
+S A RL ++ Q +PPAG DN + W + G T + TF+L + F
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 71 EHYPMEAPQV 80
E YP + P V
Sbjct: 61 EDYPNKPPTV 70
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
A R+ KEL + +PP V D++ W + G + Y+ F L + FP YP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 75 MEAPQVINYTIIFFLVLNS 93
+ P+V T I+ +NS
Sbjct: 82 FKPPKVNFTTKIYHPNINS 100
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 41 DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLN 92
DNL+ + + + G + Y + FEL++ P+ YPMEAP+V T I+ ++
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAID 81
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 18 NRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPME 76
R+ KE + +P G + DNL+ + + + G + Y + FEL++ P+ YPME
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 77 APQVINYTIIF 87
AP+V T I+
Sbjct: 68 APKVRFLTKIY 78
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
+A R+ KEL + +PPA V D++ W + G + Y F L + FP Y
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74 PMEAPQVINYTIIFFLVLNS 93
P + P+V T I+ +NS
Sbjct: 63 PFKPPKVAFTTRIYHPNINS 82
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 41 DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIF 87
DNL+ + + + G + Y + FEL++ P+ YPMEAP+V T I+
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIY 76
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 18 NRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPME 76
R+ KE + +P G + DNL+ + + + G + Y + FEL++ P+ YPME
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 77 APQVINYTIIF 87
AP+V T I+
Sbjct: 66 APKVRFLTKIY 76
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 17 SNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
S RLQ+EL ++ G DNL +W+ ++G T+Y + ++L ++FP YP
Sbjct: 11 SKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70
Query: 76 EAPQVINYT 84
+ P V+ +T
Sbjct: 71 KPP-VVKFT 78
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 1 MTSSSAPSRKALSKIASNRLQ---KELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGT 56
MT R +++ IA R++ KE+++ + K + D N E+ G P T
Sbjct: 7 MTGGQQMGRGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDT 66
Query: 57 LYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSYSLAVWL 100
Y ++L++ PE YP P+V T I+ ++S + A+ L
Sbjct: 67 PYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICL 110
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation
Revealed By A Complex Between Ubiquitin Conjugating
Enzyme Ubc9 And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation
Revealed By A Complex Between Ubiquitin Conjugating
Enzyme Ubc9 And Rangap1
Length = 159
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
++S IA +RL +E W+ + P GF T NL W + G GT + F+
Sbjct: 1 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 60
Query: 65 LQVDFPEHYPMEAPQV 80
L++ F + YP P+
Sbjct: 61 LRMLFKDDYPSSPPKC 76
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
++S IA +RL +E W+ + P GF T NL W + G GT + F+
Sbjct: 2 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 65 LQVDFPEHYPMEAPQV 80
L++ F + YP P+
Sbjct: 62 LRMLFKDDYPSSPPKC 77
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 11 ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
++S IA +RL +E W+ + P GF T NL W + G GT + F+
Sbjct: 5 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 64
Query: 65 LQVDFPEHYPMEAPQV 80
L++ F + YP P+
Sbjct: 65 LRMLFKDDYPSSPPKC 80
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQV 80
++ F + YP P+
Sbjct: 64 RMLFKDDYPSSPPKC 78
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQV 80
++ F + YP P+
Sbjct: 64 RMLFKDDYPSSPPKC 78
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 66 QVDFPEHYPMEAPQV 80
++ F + YP P+
Sbjct: 63 RMLFKDDYPSSPPKC 77
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQV 80
++ F + YP P+
Sbjct: 64 RMLFKDDYPSSPPKC 78
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of
E1 In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 66 QVDFPEHYPMEAPQV 80
++ F + YP P+
Sbjct: 61 RMLFKDDYPSSPPKC 75
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQV 80
++ F + YP P+
Sbjct: 64 RMLFKDDYPSSPPKC 78
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 66 QVDFPEHYPMEAPQV 80
++ F + YP P+
Sbjct: 61 RMLFKDDYPSSPPKC 75
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66 QVDFPEHYPMEAPQV 80
++ F + YP P+
Sbjct: 64 RMLFKDDYPSSPPKC 78
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
+S IA +RL +E W+ + P GF T NL W + G GT + F+L
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 66 QVDFPEHYPMEAPQV 80
++ F + YP P+
Sbjct: 61 RMLFKDDYPSSPPKC 75
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 36 KHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNS 93
KH+VT L ++++ G GT Y ++++VD P+ YP ++P + IF ++
Sbjct: 41 KHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDE 100
Query: 94 YSLAVWL 100
S V L
Sbjct: 101 ASGTVCL 107
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
+S A RL ++ + + P G + DN+ W + G T Y + TF L ++F
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 71 EHYPMEAPQV 80
E YP + P V
Sbjct: 61 EEYPNKPPHV 70
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 11 ALSKIASNRLQ---KELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQ 66
A++ IA R++ KE+++ + K + D N E+ G P T Y ++L+
Sbjct: 4 AMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 63
Query: 67 VDFPEHYPMEAPQVINYTIIFFLVLNSYSLAVWL 100
+ PE YP P+V T I+ ++S + A+ L
Sbjct: 64 IKIPETYPFNPPKVRFITKIWHPNISSVTGAICL 97
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 19 RLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPMEA 77
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM A
Sbjct: 12 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 71
Query: 78 PQVINYTIIF 87
P+V T I+
Sbjct: 72 PKVRFMTKIY 81
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 19 RLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPMEA 77
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM A
Sbjct: 9 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 68
Query: 78 PQVINYTIIF 87
P+V T I+
Sbjct: 69 PKVRFMTKIY 78
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 155
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 19 RLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPMEA 77
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM A
Sbjct: 10 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 69
Query: 78 PQVINYTIIF 87
P+V T I+
Sbjct: 70 PKVRFMTKIY 79
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 39 VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSYSLAV 98
V +N E+ G P T Y ++L++ PE YP P+V T I+ ++S + A+
Sbjct: 85 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 144
Query: 99 WL 100
L
Sbjct: 145 CL 146
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 19 RLQKELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
RLQKEL + + + D N W+ + G GT Y F L + P YP
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 78 PQVINYTIIFFLVLNSYSLAVWL 100
P++ T I+ ++S + A+ L
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICL 109
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 19 RLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPMEA 77
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM A
Sbjct: 7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 66
Query: 78 PQVINYTIIF 87
P+V T I+
Sbjct: 67 PKVRFMTKIY 76
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 39 VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSYSLAV 98
V +N E+ G P T Y ++L++ PE YP P+V T I+ ++S + A+
Sbjct: 34 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 93
Query: 99 WL 100
L
Sbjct: 94 CL 95
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 19 RLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPMEA 77
R+ KE P G K + ++ R+ + + G + + TF+L++ PE YPM A
Sbjct: 5 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 64
Query: 78 PQVINYTIIF 87
P+V T I+
Sbjct: 65 PKVRFMTKIY 74
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 39 VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSYSLAV 98
V +N E+ G P T Y ++L++ PE YP P+V T I+ ++S + A+
Sbjct: 33 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 92
Query: 99 WL 100
L
Sbjct: 93 CL 94
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 23 ELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAP 78
EL Q P GF+ + D +L W + + G P T Y F+ ++ FP YP P
Sbjct: 15 ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPP 72
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 23 ELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAP 78
EL Q P GF+ + D +L W + + G P T Y F+ ++ FP YP P
Sbjct: 12 ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPP 69
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTL-YANETFELQVDFPE 71
S +AS R+ KEL + Q PP ++ +D+ + P Y + F L++ FP
Sbjct: 2 SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPP 61
Query: 72 HYPMEAPQVINYTIIF 87
YP + P + T I+
Sbjct: 62 EYPFKPPMIKFTTKIY 77
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 40 TDNLQRWIIEVNGAPGTLY--ANETFELQVDFPEHYPMEAPQV 80
TD + WI++V ++Y A T++L V F + YP E P V
Sbjct: 46 TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTV 88
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
Length = 152
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 15 IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTL-YANETFELQVDFPEHY 73
+AS R+ KEL + Q PP ++ +D+ + P Y + F L++ FP Y
Sbjct: 1 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEY 60
Query: 74 PMEAPQVINYTIIF 87
P + P + T I+
Sbjct: 61 PFKPPMIKFTTKIY 74
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 32.3 bits (72), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 42 NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
+L +W ++G T Y N F + ++ P YPM P++
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKI 84
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 42 NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
+L +W ++G T Y N F + ++ P YPM P++
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKI 84
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 32.3 bits (72), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 42 NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
+L +W ++G T Y N F + ++ P YPM P++
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKI 84
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGT---LYA 59
GF V NL+ W+IEVNGAP LYA
Sbjct: 319 GFDFMVDKNLKVWLIEVNGAPACAQKLYA 347
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 13 SKIASNRLQKELVEWQVNPPAGFKHKVTD--NLQRW--IIEVNGAPGTLYANETFELQVD 68
S AS RL KEL E + F++ D NL W +I + P Y F ++++
Sbjct: 2 SMAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPP---YDKGAFRIEIN 58
Query: 69 FPEHYPMEAPQVINYTIIF 87
FP YP + P++ T I+
Sbjct: 59 FPAEYPFKPPKITFKTKIY 77
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function
In Ubiquitin-Protein Ligases
Length = 154
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVTD--NLQRW--IIEVNGAPGTLYANETFELQVDFPE 71
AS RL KEL E + F++ D NL W +I + P Y F ++++FP
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPP---YDKGAFRIEINFPA 59
Query: 72 HYPMEAPQVINYTIIF 87
YP + P++ T I+
Sbjct: 60 EYPFKPPKITFKTKIY 75
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 19 RLQKELVEWQ---VNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
RL EL Q V+ F + D+ L W + G PGT++ N + L + ++Y
Sbjct: 29 RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 88
Query: 74 PMEAPQV 80
P P V
Sbjct: 89 PDSPPTV 95
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 19 RLQKELVEWQ---VNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
RL EL Q V+ F + D+ L W + G PGT++ N + L + ++Y
Sbjct: 25 RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 84
Query: 74 PMEAPQV 80
P P V
Sbjct: 85 PDSPPTV 91
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINY 83
G + L RW + G P T+Y N + L+++ YP EAP + +
Sbjct: 49 GLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYP-EAPPFVRF 97
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINY 83
G + L RW + G P T+Y N + L+++ YP EAP + +
Sbjct: 59 GLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYP-EAPPFVRF 107
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINY 83
G + L RW + G P T+Y N + L+++ YP EAP + +
Sbjct: 31 GLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYP-EAPPFVRF 79
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGT---LYA 59
GF V + L+ W+IEVNGAP LYA
Sbjct: 316 GFDFMVDEELKVWLIEVNGAPACAQKLYA 344
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 39 VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSYSLAV 98
V ++ RW + G GT Y F L + P YP P++ T I+ ++S + A+
Sbjct: 70 VGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAI 129
Query: 99 WL 100
L
Sbjct: 130 CL 131
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 9 RKALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQV 67
R ++ A L ++ + + N G K V++++ W +E+ G +++ F+L +
Sbjct: 17 RGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTI 76
Query: 68 DFPEHYPMEAPQVINYTIIFF 88
F Y AP V+ + I F
Sbjct: 77 HFTSEYNY-APPVVKFITIPF 96
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNS 93
G + L RW + G P T Y N + L+V+ YP P V T I +N+
Sbjct: 28 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINN 87
Query: 94 YSLAV 98
S V
Sbjct: 88 SSGMV 92
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNS 93
G + L RW + G P T Y N + L+V+ YP P V T I +N+
Sbjct: 39 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINN 98
Query: 94 YSLAV 98
S V
Sbjct: 99 SSGMV 103
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 50 VNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
+ G T YAN FE V FP+ YP P V
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLV 146
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNS 93
G + L RW + G P T Y N + L+V+ YP P V T I +N+
Sbjct: 29 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINN 88
Query: 94 YSLAV 98
S V
Sbjct: 89 SSGMV 93
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 34 GFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNS 93
G + L RW + G P T Y N + L+V+ YP P V T I +N+
Sbjct: 34 GLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINN 93
Query: 94 YSLAV 98
S V
Sbjct: 94 SSGMV 98
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 29.6 bits (65), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 52 GAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSYSLAVWL 100
G PGT Y F + ++ P YP + P++ T ++ ++S + A+ L
Sbjct: 40 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICL 88
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 52 GAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSYSLAVWL 100
G PGT Y F + ++ P YP + P++ T ++ ++S + A+ L
Sbjct: 41 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICL 89
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDF 69
++ A RL E + +NPP G +N W + G T + F + F
Sbjct: 3 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 62
Query: 70 PEHYPMEAPQV 80
P YP+ P++
Sbjct: 63 PLDYPLSPPKM 73
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDF 69
++ A RL E + +NPP G +N W + G T + F + F
Sbjct: 6 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 65
Query: 70 PEHYPMEAPQV 80
P YP+ P++
Sbjct: 66 PLDYPLSPPKM 76
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
Length = 168
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDF 69
++ A RL E + +NPP G +N W + G T + F + F
Sbjct: 4 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 63
Query: 70 PEHYPMEAPQV 80
P YP+ P++
Sbjct: 64 PLDYPLSPPKM 74
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br
Domain Of Gp78 At 1.8-A Resolution
Length = 164
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 16 ASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
A RL E + +NPP G +N W + G T + F + FP Y
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 74 PMEAPQV 80
P+ P++
Sbjct: 64 PLSPPKM 70
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 19 RLQKELVEWQVNPPAGFKHKVT-----DNLQRWIIEVNGAPGTLYAN-ETFELQVDFPEH 72
RL+++L + PP + +T D Q +EV P Y N + +DF E
Sbjct: 33 RLKRDLDSLDL-PPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEV 91
Query: 73 YPMEAPQVINYTIIF 87
YP+E P+V+ IF
Sbjct: 92 YPIEPPKVVCLKKIF 106
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 44 QRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
Q + + +G GT Y +++ V P+ YP +P +
Sbjct: 29 QDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSI 65
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 12 LSKIASN-RLQKELVEWQVN-PPAGFKHKVTDN----LQRWIIEVNGAPGTLYANETFEL 65
+SK+ N RL +EL + + P + + D+ + +W + G P + + N + L
Sbjct: 1 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 60
Query: 66 QVDFPEHYPMEAPQVINYTIIFFLVLNSYSLAV 98
+D +YP P+V + I +N + V
Sbjct: 61 SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEV 93
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 12 LSKIASN-RLQKELVEWQVN-PPAGFKHKVTDN----LQRWIIEVNGAPGTLYANETFEL 65
+SK+ N RL +EL + + P + + D+ + +W + G P + + N + L
Sbjct: 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 61
Query: 66 QVDFPEHYPMEAPQVINYTIIFFLVLNSYSLAV 98
+D +YP P+V + I +N + V
Sbjct: 62 SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEV 94
>pdb|3VSR|A Chain A, Arthrobacter Sp. K-1 Beta-Fructofuranosidase
pdb|3VSS|A Chain A, Arthrobacter Sp. K-1 Beta-Fructofuranosidase Complexed
With Fructose
Length = 496
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 22 KELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYA---NETFELQVDFPE 71
K+L EW+ PP + VTD +R I L+ TF +D PE
Sbjct: 316 KQLTEWEFLPPILSANCVTDQTERPQIYFKDGKSYLFTISHRGTFAAGLDGPE 368
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3HJV|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 312
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 5 SAPSRKALSKIASNRLQKELVEWQVNPP 32
S PS AL K A++ L K L E + N P
Sbjct: 202 SVPSHCALXKPAADELAKTLAELEFNAP 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,351,222
Number of Sequences: 62578
Number of extensions: 125644
Number of successful extensions: 398
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 115
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)