Query 033979
Match_columns 107
No_of_seqs 124 out of 1064
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:26:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 8.9E-36 1.9E-40 202.6 10.6 85 15-100 5-91 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 1.1E-35 2.3E-40 199.3 8.4 84 16-100 2-86 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 1.5E-33 3.2E-38 185.3 8.4 88 12-100 1-89 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 1.4E-32 3.1E-37 187.4 11.4 85 16-101 3-88 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.4E-32 3E-37 186.6 11.0 85 16-101 2-87 (147)
6 KOG0426 Ubiquitin-protein liga 100.0 1.5E-30 3.2E-35 171.5 8.9 88 12-100 1-90 (165)
7 KOG0418 Ubiquitin-protein liga 100.0 1.4E-30 3.1E-35 179.9 8.3 88 12-100 1-92 (200)
8 PF00179 UQ_con: Ubiquitin-con 100.0 4.2E-30 9.2E-35 172.3 8.6 83 19-102 1-85 (140)
9 KOG0425 Ubiquitin-protein liga 100.0 9.2E-30 2E-34 171.5 9.2 84 16-100 6-91 (171)
10 KOG0421 Ubiquitin-protein liga 100.0 1.4E-29 3.1E-34 168.8 9.6 87 13-100 27-114 (175)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 3.1E-29 6.7E-34 168.4 10.2 84 18-102 2-86 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 5.6E-28 1.2E-32 163.0 10.4 85 18-103 1-87 (145)
13 KOG0422 Ubiquitin-protein liga 100.0 1.8E-28 4E-33 162.5 6.8 85 16-102 3-89 (153)
14 KOG0424 Ubiquitin-protein liga 100.0 4.3E-28 9.2E-33 161.5 8.3 90 12-102 1-96 (158)
15 KOG0427 Ubiquitin conjugating 99.9 3.8E-27 8.2E-32 155.2 10.6 100 1-101 1-101 (161)
16 KOG0416 Ubiquitin-protein liga 99.9 5.3E-24 1.2E-28 145.4 7.4 82 16-100 4-86 (189)
17 KOG0423 Ubiquitin-protein liga 99.9 1.4E-23 3E-28 144.0 4.6 92 8-100 3-95 (223)
18 KOG0420 Ubiquitin-protein liga 99.9 6.9E-23 1.5E-27 140.1 7.1 91 8-100 21-114 (184)
19 KOG0894 Ubiquitin-protein liga 99.9 2.1E-22 4.5E-27 142.1 8.9 73 13-85 3-76 (244)
20 KOG0428 Non-canonical ubiquiti 99.8 3.2E-18 6.9E-23 123.2 8.3 90 11-101 7-105 (314)
21 KOG0429 Ubiquitin-conjugating 99.5 9.4E-14 2E-18 98.8 8.8 86 17-103 21-109 (258)
22 KOG0896 Ubiquitin-conjugating 99.4 5E-13 1.1E-17 88.5 6.2 82 17-98 7-93 (138)
23 KOG0895 Ubiquitin-conjugating 99.4 2.5E-13 5.5E-18 112.8 5.8 89 15-104 851-942 (1101)
24 KOG0895 Ubiquitin-conjugating 99.4 1.2E-12 2.7E-17 108.8 9.6 89 13-102 280-372 (1101)
25 PF14461 Prok-E2_B: Prokaryoti 97.6 0.00016 3.5E-09 48.1 4.6 43 59-102 34-79 (133)
26 PF08694 UFC1: Ubiquitin-fold 96.9 0.0006 1.3E-08 46.1 1.9 78 14-101 23-115 (161)
27 PF05743 UEV: UEV domain; Int 96.8 0.007 1.5E-07 39.8 6.4 55 45-101 30-92 (121)
28 PF05773 RWD: RWD domain; Int 96.7 0.0083 1.8E-07 37.7 6.2 69 17-86 3-74 (113)
29 smart00591 RWD domain in RING 96.3 0.038 8.3E-07 34.3 7.5 26 60-85 40-65 (107)
30 KOG0897 Predicted ubiquitin-co 95.5 0.0084 1.8E-07 39.1 1.6 37 63-99 13-49 (122)
31 KOG3357 Uncharacterized conser 95.3 0.038 8.1E-07 37.0 4.2 76 16-102 28-119 (167)
32 KOG2391 Vacuolar sorting prote 91.9 0.65 1.4E-05 35.7 6.1 52 50-102 55-113 (365)
33 PF14462 Prok-E2_E: Prokaryoti 85.2 5.2 0.00011 26.4 6.1 51 34-85 13-66 (122)
34 KOG0309 Conserved WD40 repeat- 82.2 8.8 0.00019 33.0 7.5 67 17-85 422-491 (1081)
35 PF09765 WD-3: WD-repeat regio 81.5 7.1 0.00015 29.4 6.4 62 15-84 99-160 (291)
36 KOG4018 Uncharacterized conser 81.5 6.7 0.00015 28.3 5.9 20 62-81 50-69 (215)
37 smart00340 HALZ homeobox assoc 70.4 4 8.7E-05 22.0 1.8 15 16-30 20-34 (44)
38 PF14457 Prok-E2_A: Prokaryoti 64.1 5.7 0.00012 27.4 2.0 30 64-93 56-88 (162)
39 cd00421 intradiol_dioxygenase 63.4 14 0.0003 24.7 3.8 25 60-84 65-90 (146)
40 cd03457 intradiol_dioxygenase_ 60.5 16 0.00035 25.7 3.8 25 60-84 86-110 (188)
41 PF09606 Med15: ARC105 or Med1 53.9 4.3 9.2E-05 34.7 0.0 27 61-87 714-740 (799)
42 cd03459 3,4-PCD Protocatechuat 53.3 26 0.00057 23.9 3.8 25 60-84 72-101 (158)
43 PF06113 BRE: Brain and reprod 52.5 50 0.0011 25.5 5.5 28 60-88 305-332 (333)
44 PF06113 BRE: Brain and reprod 50.4 25 0.00055 27.1 3.7 42 43-90 53-95 (333)
45 PF08203 RNA_polI_A14: Yeast R 50.3 15 0.00033 22.3 2.0 13 15-27 59-71 (76)
46 PF14135 DUF4302: Domain of un 49.9 64 0.0014 23.2 5.6 71 16-96 10-104 (235)
47 KOG3285 Spindle assembly check 49.6 37 0.0008 24.1 4.1 56 14-80 118-174 (203)
48 PF00845 Gemini_BL1: Geminivir 48.3 44 0.00095 24.9 4.4 48 42-89 101-156 (276)
49 TIGR02423 protocat_alph protoc 44.8 38 0.00083 23.9 3.7 24 60-83 96-124 (193)
50 PF12621 DUF3779: Phosphate me 44.1 13 0.00027 23.2 1.0 21 84-104 34-54 (95)
51 PF14909 SPATA6: Spermatogenes 43.5 86 0.0019 21.2 5.0 53 31-85 83-137 (140)
52 KOG4445 Uncharacterized conser 43.3 35 0.00076 26.3 3.4 25 61-85 45-69 (368)
53 PF14824 Sirohm_synth_M: Siroh 41.3 32 0.00069 17.1 2.0 17 11-27 13-29 (30)
54 PF14455 Metal_CEHH: Predicted 41.0 78 0.0017 22.0 4.5 63 20-85 10-76 (177)
55 PF12065 DUF3545: Protein of u 40.1 21 0.00046 20.6 1.4 13 17-29 36-48 (59)
56 cd03463 3,4-PCD_alpha Protocat 39.7 52 0.0011 23.1 3.7 23 61-83 93-120 (185)
57 PF15572 Imm26: Immunity prote 39.2 35 0.00076 21.6 2.5 26 53-83 7-32 (96)
58 PF09967 DUF2201: VWA-like dom 34.3 1.2E+02 0.0027 19.5 4.7 28 12-39 11-38 (126)
59 PHA03200 uracil DNA glycosylas 34.0 46 0.001 24.7 2.8 36 43-81 82-118 (255)
60 PF02970 TBCA: Tubulin binding 34.0 50 0.0011 20.3 2.6 16 14-29 6-21 (90)
61 PF03487 IL13: Interleukin-13; 28.7 86 0.0019 16.7 2.5 18 13-30 25-42 (43)
62 KOG3696 Aspartyl beta-hydroxyl 28.1 45 0.00097 25.7 1.9 23 71-93 303-325 (334)
63 PF09458 H_lectin: H-type lect 27.8 94 0.002 17.6 3.0 23 62-85 2-24 (72)
64 TIGR02439 catechol_proteo cate 26.0 1.1E+02 0.0025 23.0 3.7 25 60-84 180-222 (285)
65 PF06305 DUF1049: Protein of u 25.4 77 0.0017 17.8 2.2 16 15-30 48-63 (68)
66 cd03464 3,4-PCD_beta Protocate 24.8 1.3E+02 0.0028 21.8 3.7 24 60-83 122-152 (220)
67 COG2819 Predicted hydrolase of 24.6 1.4E+02 0.003 22.4 3.9 30 55-84 15-46 (264)
68 TIGR02422 protocat_beta protoc 24.3 1.3E+02 0.0028 21.7 3.7 24 60-83 117-147 (220)
69 TIGR02438 catachol_actin catec 24.2 1.3E+02 0.0028 22.6 3.8 25 60-84 184-226 (281)
70 PF04881 Adeno_GP19K: Adenovir 24.0 1.5E+02 0.0032 20.0 3.5 30 40-69 44-74 (139)
71 KOG3203 Mitochondrial/chloropl 23.7 40 0.00086 23.3 0.9 21 84-106 49-69 (165)
72 cd03461 1,2-HQD Hydroxyquinol 23.4 1.4E+02 0.0029 22.5 3.7 25 60-84 172-214 (277)
73 cd03460 1,2-CTD Catechol 1,2 d 22.9 1.4E+02 0.0031 22.5 3.7 25 60-84 176-218 (282)
74 COG3866 PelB Pectate lyase [Ca 22.6 1.8E+02 0.0038 22.6 4.2 39 45-84 198-240 (345)
75 PF08675 RNA_bind: RNA binding 22.0 77 0.0017 19.7 1.8 20 52-73 1-20 (87)
76 TIGR01239 galT_2 galactose-1-p 21.3 83 0.0018 25.6 2.3 26 58-92 356-386 (489)
77 KOG1954 Endocytosis/signaling 20.5 2.7E+02 0.0057 22.5 4.9 48 25-76 76-123 (532)
78 PF09943 DUF2175: Uncharacteri 20.2 1.1E+02 0.0024 19.5 2.3 20 45-66 2-21 (101)
79 COG1343 CRISPR-associated prot 20.1 2.3E+02 0.005 17.5 4.6 45 12-56 39-83 (89)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-36 Score=202.59 Aligned_cols=85 Identities=39% Similarity=0.610 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEee-CC-CcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceeccc
Q 033979 15 IASNRLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLN 92 (107)
Q Consensus 15 ~~~~RL~kEl~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 92 (107)
.+.+||+||++++++++++++++.+ ++ |+++|++.|.||++||||||+|++.|.||+|||++||+|+|.|+|||||||
T Consensus 5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~ 84 (153)
T COG5078 5 SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD 84 (153)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC
Confidence 3899999999999999999999999 55 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeee
Q 033979 93 SYSLAVWL 100 (107)
Q Consensus 93 ~~~g~v~~ 100 (107)
.+|.||+
T Consensus 85 -~~G~vCL 91 (153)
T COG5078 85 -PSGNVCL 91 (153)
T ss_pred -CCCCChh
Confidence 6999987
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=199.27 Aligned_cols=84 Identities=36% Similarity=0.626 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccCC
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSY 94 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 94 (107)
+.+||.||++++++++++||++.+ ++|+++|+++|.||.|||||||+|++.|.||.+||++||+|+|.|+|||||||+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~- 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS- 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc-
Confidence 356999999999999999999999 999999999999999999999999999999999999999999999999999995
Q ss_pred CCeeee
Q 033979 95 SLAVWL 100 (107)
Q Consensus 95 ~g~v~~ 100 (107)
.|.+|+
T Consensus 81 ~G~Icl 86 (148)
T KOG0417|consen 81 NGRICL 86 (148)
T ss_pred cccchH
Confidence 777654
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=185.32 Aligned_cols=88 Identities=27% Similarity=0.482 Sum_probs=84.6
Q ss_pred hcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceec
Q 033979 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLV 90 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 90 (107)
|++.+.+||++|++.++++++.|++..+ ++|++.|.++|+||++|||+||+|++.|.|+++||.+||.|+|.+++||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 6788999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeee
Q 033979 91 LNSYSLAVWL 100 (107)
Q Consensus 91 v~~~~g~v~~ 100 (107)
|+.+ |.+|+
T Consensus 81 vya~-G~iCl 89 (152)
T KOG0419|consen 81 VYAD-GSICL 89 (152)
T ss_pred cCCC-CcchH
Confidence 9997 77765
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.4e-32 Score=187.39 Aligned_cols=85 Identities=31% Similarity=0.521 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccCC
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSY 94 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 94 (107)
+.+||+||+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~- 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK- 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC-
Confidence 479999999999999999999999 899999999999999999999999999999999999999999999999999997
Q ss_pred CCeeeec
Q 033979 95 SLAVWLP 101 (107)
Q Consensus 95 ~g~v~~p 101 (107)
.|.||+.
T Consensus 82 ~G~iCl~ 88 (152)
T PTZ00390 82 LGRICLD 88 (152)
T ss_pred CCeEECc
Confidence 7899985
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.4e-32 Score=186.58 Aligned_cols=85 Identities=32% Similarity=0.531 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccCC
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSY 94 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 94 (107)
+.+||+||+++|+++++.++.+.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~- 80 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS- 80 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-
Confidence 468999999999999999999999 899999999999999999999999999999999999999999999999999997
Q ss_pred CCeeeec
Q 033979 95 SLAVWLP 101 (107)
Q Consensus 95 ~g~v~~p 101 (107)
+|.||+.
T Consensus 81 ~G~iCl~ 87 (147)
T PLN00172 81 NGSICLD 87 (147)
T ss_pred CCEEEcc
Confidence 7999875
No 6
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=171.50 Aligned_cols=88 Identities=24% Similarity=0.440 Sum_probs=83.6
Q ss_pred hcHHHHHHHHHHHHHHhhCCCCCeEEee--CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCccee
Q 033979 12 LSKIASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFL 89 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 89 (107)
|+..++|||++|+++|.+++++||.+.+ +||++.|.++|.||++|+|+||.|-.++.||.|||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 5677999999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeeee
Q 033979 90 VLNSYSLAVWL 100 (107)
Q Consensus 90 nv~~~~g~v~~ 100 (107)
||+. .|.||.
T Consensus 81 Niy~-dG~VCI 90 (165)
T KOG0426|consen 81 NIYP-DGRVCI 90 (165)
T ss_pred cccC-CCeEEE
Confidence 9999 566764
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-30 Score=179.92 Aligned_cols=88 Identities=31% Similarity=0.470 Sum_probs=84.0
Q ss_pred hcHHHHHHHHHHHHHHhhCC---CCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcc
Q 033979 12 LSKIASNRLQKELVEWQVNP---PAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIF 87 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~---~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 87 (107)
|+. +.+||++|++++.+++ ..|+.+.. .+|+.+.++.|.||+|||||||.|.+.|.+|++|||+||+|+|.|+||
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 455 7899999999999997 78999998 889999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCeeee
Q 033979 88 FLVLNSYSLAVWL 100 (107)
Q Consensus 88 Hpnv~~~~g~v~~ 100 (107)
||||.+.+|++||
T Consensus 80 HPnVSs~tGaICL 92 (200)
T KOG0418|consen 80 HPNVSSQTGAICL 92 (200)
T ss_pred cCCCCcccccchh
Confidence 9999999999998
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.96 E-value=4.2e-30 Score=172.34 Aligned_cols=83 Identities=39% Similarity=0.660 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhCCCCCeEEee-CC-CcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccCCCC
Q 033979 19 RLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSYSL 96 (107)
Q Consensus 19 RL~kEl~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~g 96 (107)
||++|+++++++++.|+.+.+ ++ |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+ .+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence 899999999999999999999 65 999999999999999999999999999999999999999999999999999 588
Q ss_pred eeeecc
Q 033979 97 AVWLPR 102 (107)
Q Consensus 97 ~v~~p~ 102 (107)
.+|+..
T Consensus 80 ~icl~~ 85 (140)
T PF00179_consen 80 RICLDI 85 (140)
T ss_dssp BBGHGG
T ss_pred cchhhh
Confidence 998853
No 9
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.2e-30 Score=171.54 Aligned_cols=84 Identities=27% Similarity=0.496 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee--CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccC
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNS 93 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 93 (107)
+..-|+++|++|++.+..|+.+.. +.|+++|.+.|+||++|+|+||.|+..+.||.|||++||+++|.|+||||||++
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 567789999999999999999998 569999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeee
Q 033979 94 YSLAVWL 100 (107)
Q Consensus 94 ~~g~v~~ 100 (107)
.|.||.
T Consensus 86 -~G~vCI 91 (171)
T KOG0425|consen 86 -DGDVCI 91 (171)
T ss_pred -CCCEEE
Confidence 566664
No 10
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-29 Score=168.84 Aligned_cols=87 Identities=28% Similarity=0.495 Sum_probs=82.7
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecc
Q 033979 13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVL 91 (107)
Q Consensus 13 s~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 91 (107)
.....|||++||..|.....+||++.+ +||++.|.++|.||.+|+|+|-.|++.+.||++||++||+|+|+|+.|||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 456789999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeee
Q 033979 92 NSYSLAVWL 100 (107)
Q Consensus 92 ~~~~g~v~~ 100 (107)
|. .|.+||
T Consensus 107 D~-~GnIcL 114 (175)
T KOG0421|consen 107 DL-SGNICL 114 (175)
T ss_pred cc-cccchH
Confidence 99 677775
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.96 E-value=3.1e-29 Score=168.41 Aligned_cols=84 Identities=33% Similarity=0.627 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccCCCC
Q 033979 18 NRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSYSL 96 (107)
Q Consensus 18 ~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~g 96 (107)
+||++|+++++++++.|+++.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+ .+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCC
Confidence 7999999999999999999999 78999999999999999999999999999999999999999999999999999 589
Q ss_pred eeeecc
Q 033979 97 AVWLPR 102 (107)
Q Consensus 97 ~v~~p~ 102 (107)
.||+.-
T Consensus 81 ~icl~~ 86 (141)
T cd00195 81 KICLSI 86 (141)
T ss_pred CCchhh
Confidence 998864
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.95 E-value=5.6e-28 Score=162.96 Aligned_cols=85 Identities=35% Similarity=0.593 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEee-CC-CcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccCCC
Q 033979 18 NRLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSYS 95 (107)
Q Consensus 18 ~RL~kEl~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~ 95 (107)
+||++|+++++++++.|+.+.+ ++ |++.|+++|.||++|||+||.|.+.|.||++||.+||+|+|.++++|||||. +
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-S 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-C
Confidence 5999999999999999999988 54 9999999999999999999999999999999999999999999999999998 8
Q ss_pred Ceeeeccc
Q 033979 96 LAVWLPRN 103 (107)
Q Consensus 96 g~v~~p~~ 103 (107)
|.||++..
T Consensus 80 G~icl~~l 87 (145)
T smart00212 80 GEICLDIL 87 (145)
T ss_pred CCEehhhc
Confidence 99998753
No 13
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-28 Score=162.49 Aligned_cols=85 Identities=31% Similarity=0.467 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee--CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccC
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNS 93 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 93 (107)
+.+||+|||.+|++++...+.-.. ++|++.|++.|. |++.||..|.|+++|.||.+|||+||+|+|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 679999999999999877666544 779999999998 89999999999999999999999999999999999999999
Q ss_pred CCCeeeecc
Q 033979 94 YSLAVWLPR 102 (107)
Q Consensus 94 ~~g~v~~p~ 102 (107)
. |+||+|-
T Consensus 82 ~-gqvClPi 89 (153)
T KOG0422|consen 82 K-GQVCLPI 89 (153)
T ss_pred C-Cceeeee
Confidence 5 9999994
No 14
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.3e-28 Score=161.49 Aligned_cols=90 Identities=32% Similarity=0.525 Sum_probs=84.0
Q ss_pred hcHHHHHHHHHHHHHHhhCCCCCeEEee---C---CCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 033979 12 LSKIASNRLQKELVEWQVNPPAGFKHKV---T---DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~~~~~~~~~---~---~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
||+.++.||+.|-+.+.++.+.|+++.+ . .|++.|++.|-|+++|+||||.|.+++.||+|||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 5677899999999999999999999987 2 379999999999999999999999999999999999999999999
Q ss_pred cceecccCCCCeeeecc
Q 033979 86 IFFLVLNSYSLAVWLPR 102 (107)
Q Consensus 86 i~Hpnv~~~~g~v~~p~ 102 (107)
.|||||+. +|.|||--
T Consensus 81 l~HPNVyp-sgtVcLsi 96 (158)
T KOG0424|consen 81 LFHPNVYP-SGTVCLSI 96 (158)
T ss_pred CcCCCcCC-CCcEehhh
Confidence 99999999 88998753
No 15
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.8e-27 Score=155.15 Aligned_cols=100 Identities=71% Similarity=1.071 Sum_probs=95.8
Q ss_pred CCCCCCCCcchhcHHHHHHHHHHHHHHhhCCCCCeEEeeCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeE
Q 033979 1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80 (107)
Q Consensus 1 ~~s~s~~~~~~ms~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 80 (107)
||||+++++..|+..+.+||+|||.+++.+++.|+.....||+.+|.+.+.|.+||.|+|..|.+.+.||+.||++.|+|
T Consensus 1 mtss~~~~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqV 80 (161)
T KOG0427|consen 1 MTSSSAPSRKALSKIATNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQV 80 (161)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeE
Confidence 89999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred EEecCc-ceecccCCCCeeeec
Q 033979 81 INYTII-FFLVLNSYSLAVWLP 101 (107)
Q Consensus 81 ~f~t~i-~Hpnv~~~~g~v~~p 101 (107)
.|..++ .||+|++ .|.+||-
T Consensus 81 mF~~~~P~HPHiYS-NGHICL~ 101 (161)
T KOG0427|consen 81 MFVGPAPLHPHIYS-NGHICLD 101 (161)
T ss_pred EEecCCCCCCceec-CCeEEEE
Confidence 999876 7999999 7888763
No 16
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.3e-24 Score=145.40 Aligned_cols=82 Identities=18% Similarity=0.488 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccCC
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSY 94 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 94 (107)
..+||..|+..|... +..+.. .+++.++++.+.||.+|||+||++++++.+|++||++.|.|.|.++|||||||+-
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 368899999888766 455666 7789999999999999999999999999999999999999999999999999999
Q ss_pred CCeeee
Q 033979 95 SLAVWL 100 (107)
Q Consensus 95 ~g~v~~ 100 (107)
+|.|||
T Consensus 81 SGsVCL 86 (189)
T KOG0416|consen 81 SGSVCL 86 (189)
T ss_pred cCccHH
Confidence 999997
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.4e-23 Score=144.02 Aligned_cols=92 Identities=25% Similarity=0.422 Sum_probs=85.5
Q ss_pred CcchhcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCc
Q 033979 8 SRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTII 86 (107)
Q Consensus 8 ~~~~ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 86 (107)
++.......++.+.||++++...|+.||.+.+ ++|.....+.|.||.||||++|+|++.+.+..|||.+||+-.|+|+|
T Consensus 3 snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKI 82 (223)
T KOG0423|consen 3 SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKI 82 (223)
T ss_pred cccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeee
Confidence 34566677899999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCeeee
Q 033979 87 FFLVLNSYSLAVWL 100 (107)
Q Consensus 87 ~Hpnv~~~~g~v~~ 100 (107)
|||||-. .|++|.
T Consensus 83 FHPNVaa-NGEICV 95 (223)
T KOG0423|consen 83 FHPNVAA-NGEICV 95 (223)
T ss_pred ccCCccc-Cceehh
Confidence 9999988 777764
No 18
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.9e-23 Score=140.08 Aligned_cols=91 Identities=22% Similarity=0.402 Sum_probs=72.6
Q ss_pred CcchhcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcc--eEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033979 8 SRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQ--RWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYT 84 (107)
Q Consensus 8 ~~~~ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 84 (107)
+....++.++.||++|+.++..-+...+++.. .++.. +.+++|. |++..|+||.|.|.+.+|+.||++||+|+|+|
T Consensus 21 ~~~~~~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkClt 99 (184)
T KOG0420|consen 21 STRKKVSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLT 99 (184)
T ss_pred cccccccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeee
Confidence 45555677889999999888655433333333 34444 4888887 99999999999999999999999999999999
Q ss_pred CcceecccCCCCeeee
Q 033979 85 IIFFLVLNSYSLAVWL 100 (107)
Q Consensus 85 ~i~Hpnv~~~~g~v~~ 100 (107)
+|||||||. .|.|||
T Consensus 100 kV~HPNId~-~GnVCL 114 (184)
T KOG0420|consen 100 KVYHPNIDL-DGNVCL 114 (184)
T ss_pred ccccCCcCC-cchHHH
Confidence 999999999 666764
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.1e-22 Score=142.11 Aligned_cols=73 Identities=27% Similarity=0.419 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 033979 13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 13 s~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
+..+.|||+||++.|+++|.++|.+.+ ++|+.+|+.+|.||++|||+||.|+.+|.||.|||++||.|+.+|+
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP 76 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP 76 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC
Confidence 466899999999999999999999999 9999999999999999999999999999999999999999999997
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.2e-18 Score=123.22 Aligned_cols=90 Identities=28% Similarity=0.530 Sum_probs=76.0
Q ss_pred hhcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCccee
Q 033979 11 ALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFL 89 (107)
Q Consensus 11 ~ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 89 (107)
+.-+.+.|||+||.++++ +|...+...+ |||+++|+++|-||.||-|+||+|+.+|.||.|||++||.+..+|+--..
T Consensus 7 N~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRF 85 (314)
T KOG0428|consen 7 NLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRF 85 (314)
T ss_pred cccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCce
Confidence 344568999999999998 7777777778 99999999999999999999999999999999999999999999975444
Q ss_pred c--------ccCCCCeeeec
Q 033979 90 V--------LNSYSLAVWLP 101 (107)
Q Consensus 90 n--------v~~~~g~v~~p 101 (107)
- |..+.-+-|+|
T Consensus 86 E~nkKiCLSISgyHPEtWqP 105 (314)
T KOG0428|consen 86 EVNKKICLSISGYHPETWQP 105 (314)
T ss_pred eeCceEEEEecCCCccccCc
Confidence 3 44444555555
No 21
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9.4e-14 Score=98.78 Aligned_cols=86 Identities=21% Similarity=0.276 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCC--CCCCeEEEecCcceecccC
Q 033979 17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP--MEAPQVINYTIIFFLVLNS 93 (107)
Q Consensus 17 ~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP--~~pP~v~f~t~i~Hpnv~~ 93 (107)
..-|..|+..+.+.+.+||++.+ -.+-+.|.++|++..| +|+||+|+|+|.+|++|| .+-|+|.|.+.++||+|..
T Consensus 21 ey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp 99 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP 99 (258)
T ss_pred HHHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence 34578889999999999999999 7889999999998665 799999999999999999 5899999999999999999
Q ss_pred CCCeeeeccc
Q 033979 94 YSLAVWLPRN 103 (107)
Q Consensus 94 ~~g~v~~p~~ 103 (107)
+++..++-+-
T Consensus 100 ~skeLdl~ra 109 (258)
T KOG0429|consen 100 KSKELDLNRA 109 (258)
T ss_pred CccceeHhhh
Confidence 9999987653
No 22
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=5e-13 Score=88.47 Aligned_cols=82 Identities=30% Similarity=0.356 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhCCCCCeEEee---CCC--cceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecc
Q 033979 17 SNRLQKELVEWQVNPPAGFKHKV---TDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVL 91 (107)
Q Consensus 17 ~~RL~kEl~~l~~~~~~~~~~~~---~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 91 (107)
..||.+|+.+=++..-++....- .+| +..|...|.||+.|+||+.+|.++|....+||..||.|+|.++|-...|
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gv 86 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGV 86 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccc
Confidence 46788888887776555544333 234 4689999999999999999999999999999999999999999999999
Q ss_pred cCCCCee
Q 033979 92 NSYSLAV 98 (107)
Q Consensus 92 ~~~~g~v 98 (107)
+..+|.|
T Consensus 87 n~~~g~V 93 (138)
T KOG0896|consen 87 NSSNGVV 93 (138)
T ss_pred ccCCCcc
Confidence 9988876
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.5e-13 Score=112.83 Aligned_cols=89 Identities=22% Similarity=0.263 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC--cceecc
Q 033979 15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTI--IFFLVL 91 (107)
Q Consensus 15 ~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hpnv 91 (107)
...+..+.|.+-|..+.+.||.+.. |+.+...+++|.|+.+|||++|.|+|.|.||+|||.+||.|...+. .+.||.
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 3445566777788888999999999 9999999999999999999999999999999999999999999985 567888
Q ss_pred cCCCCeeeecccc
Q 033979 92 NSYSLAVWLPRNC 104 (107)
Q Consensus 92 ~~~~g~v~~p~~~ 104 (107)
+. +|.||+-...
T Consensus 931 y~-~g~vc~s~l~ 942 (1101)
T KOG0895|consen 931 YE-DGKVCLSLLN 942 (1101)
T ss_pred cc-ccceehhhhc
Confidence 87 7888876544
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.2e-12 Score=108.78 Aligned_cols=89 Identities=27% Similarity=0.317 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC---cce
Q 033979 13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTI---IFF 88 (107)
Q Consensus 13 s~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~H 88 (107)
+....+|+++|++.+.++.+.|+.+.+ +.++....++|.||.++||++|+|.|.|+||..||..||.|+++|. .+-
T Consensus 280 s~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~n 359 (1101)
T KOG0895|consen 280 SKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLN 359 (1101)
T ss_pred chhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeec
Confidence 455789999999999999999999999 8999999999999999999999999999999999999999999986 678
Q ss_pred ecccCCCCeeeecc
Q 033979 89 LVLNSYSLAVWLPR 102 (107)
Q Consensus 89 pnv~~~~g~v~~p~ 102 (107)
||.+-.| .||+-.
T Consensus 360 PNlYn~G-KVcLsl 372 (1101)
T KOG0895|consen 360 PNLYNDG-KVCLSL 372 (1101)
T ss_pred CCcccCc-eEEeee
Confidence 8888844 888743
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.55 E-value=0.00016 Score=48.09 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=38.0
Q ss_pred CCCEEEEEEECCCCCCCCCCeEEEecCc---ceecccCCCCeeeecc
Q 033979 59 ANETFELQVDFPEHYPMEAPQVINYTII---FFLVLNSYSLAVWLPR 102 (107)
Q Consensus 59 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~Hpnv~~~~g~v~~p~ 102 (107)
.|+.+.++|.||++||..||.|....+. +-|||+. +|.+|+-.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~ 79 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLD 79 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEec
Confidence 5899999999999999999999888654 6899999 88888843
No 26
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.89 E-value=0.0006 Score=46.08 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhC-------CCCCeEEeeCCCcceEEEEEEcCCCCCCCCC--EEEEEEECCCCCCCCCCeEEEec
Q 033979 14 KIASNRLQKELVEWQVN-------PPAGFKHKVTDNLQRWIIEVNGAPGTLYANE--TFELQVDFPEHYPMEAPQVINYT 84 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~-------~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg--~f~~~i~fp~~YP~~pP~v~f~t 84 (107)
..-..||..|+..|-+- ....+.+....+=..|.+.-.- .|+-- .|.+++.+|..||..||.+..-.
T Consensus 23 ~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPe 98 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIKYVENNKENDNDWFRLESNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPE 98 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GG
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCeEEeccCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccc
Confidence 44578999999987432 3445555553333455443221 12223 45566667999999999997753
Q ss_pred ------CcceecccCCCCeeeec
Q 033979 85 ------IIFFLVLNSYSLAVWLP 101 (107)
Q Consensus 85 ------~i~Hpnv~~~~g~v~~p 101 (107)
++|+ ||.+|+-
T Consensus 99 LdGKTaKMYR------GGkIClt 115 (161)
T PF08694_consen 99 LDGKTAKMYR------GGKICLT 115 (161)
T ss_dssp GTTT-SSBCC------CCBB---
T ss_pred cCCchhhhhc------CceEeee
Confidence 5665 8998874
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=96.78 E-value=0.007 Score=39.75 Aligned_cols=55 Identities=24% Similarity=0.417 Sum_probs=33.9
Q ss_pred eEEEEEEcCCCCCCCCCEEEE--EEECCCCCCCCCCeEEEecC------cceecccCCCCeeeec
Q 033979 45 RWIIEVNGAPGTLYANETFEL--QVDFPEHYPMEAPQVINYTI------IFFLVLNSYSLAVWLP 101 (107)
Q Consensus 45 ~w~~~i~gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i~Hpnv~~~~g~v~~p 101 (107)
+--..+.|----.|+|..|.+ .|-+|.+||.+||.|..... .-| +||. .|.|.+|
T Consensus 30 ~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~-~Vd~-~G~v~~p 92 (121)
T PF05743_consen 30 KLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSH-HVDS-NGRVYLP 92 (121)
T ss_dssp EEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCC-CB-T-TSBB-SH
T ss_pred heEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCC-eECC-CCCEeCc
Confidence 333444552223588888865 55589999999999977643 234 8999 5777655
No 28
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.72 E-value=0.0083 Score=37.67 Aligned_cols=69 Identities=13% Similarity=0.220 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEE--cCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCc
Q 033979 17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVN--GAPGTLYANETFELQVDFPEHYPMEAPQVINYTII 86 (107)
Q Consensus 17 ~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~--gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 86 (107)
..+...|+..|+..-...+ ... ..+...+.+.+. ....+.-....+.+.+.||++||..+|.|...+..
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 3567788888877644444 122 334445566662 12333444678999999999999999999887754
No 29
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.34 E-value=0.038 Score=34.35 Aligned_cols=26 Identities=38% Similarity=0.614 Sum_probs=22.7
Q ss_pred CCEEEEEEECCCCCCCCCCeEEEecC
Q 033979 60 NETFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 60 gg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
.-.+.+.+.||.+||..+|.|.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 45688999999999999999998764
No 30
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.0084 Score=39.11 Aligned_cols=37 Identities=14% Similarity=-0.056 Sum_probs=25.7
Q ss_pred EEEEEECCCCCCCCCCeEEEecCcceecccCCCCeee
Q 033979 63 FELQVDFPEHYPMEAPQVINYTIIFFLVLNSYSLAVW 99 (107)
Q Consensus 63 f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~g~v~ 99 (107)
..+.+.|++|||+.||.++...++.--..-..||++|
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIc 49 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAIC 49 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhH
Confidence 4567789999999999998776654333334455554
No 31
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.038 Score=37.04 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeeCCCcceEEEEEEcCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEEec-
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANE----------TFELQVDFPEHYPMEAPQVINYT- 84 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~t- 84 (107)
-.+||..|++.|...-..+ +++-..|.-.=..++||-|-|. .|.+++.+|-.||-.+|.+..-.
T Consensus 28 wvqrlkeey~sli~yvqnn-----k~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 28 WVQRLKEEYQSLIAYVQNN-----KSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHHHHHHhC-----cccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 4689999999885431100 2222334333334667777663 45667778999999999886542
Q ss_pred -----CcceecccCCCCeeeecc
Q 033979 85 -----IIFFLVLNSYSLAVWLPR 102 (107)
Q Consensus 85 -----~i~Hpnv~~~~g~v~~p~ 102 (107)
++|. ||.+||--
T Consensus 103 dgktakmyr------ggkiclt~ 119 (167)
T KOG3357|consen 103 DGKTAKMYR------GGKICLTD 119 (167)
T ss_pred Cchhhhhhc------CceEeecc
Confidence 3443 88888753
No 32
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=0.65 Score=35.74 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=38.2
Q ss_pred EEcCCCCCCCCCEEEEEEE--CCCCCCCCCCeEEEecC-----cceecccCCCCeeeecc
Q 033979 50 VNGAPGTLYANETFELQVD--FPEHYPMEAPQVINYTI-----IFFLVLNSYSLAVWLPR 102 (107)
Q Consensus 50 i~gp~~tpy~gg~f~~~i~--fp~~YP~~pP~v~f~t~-----i~Hpnv~~~~g~v~~p~ 102 (107)
+.|=--.+|.|.+|.+-|. +.+.||..||.+..... -.|-+||. .|.|.||=
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~LPY 113 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYLPY 113 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEechh
Confidence 3343335788888886665 69999999999855531 23889999 88998884
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=85.17 E-value=5.2 Score=26.40 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=36.7
Q ss_pred CeEEee-CCCcceEEEEEEc--CCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 033979 34 GFKHKV-TDNLQRWIIEVNG--APGTLYANETFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 34 ~~~~~~-~~~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
|+..+. .+.-..|.+ |.| -+...|....-.+-|.+|..||..+|.+-+..+
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P 66 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP 66 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC
Confidence 555554 444455655 666 334459999999999999999999888766654
No 34
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.22 E-value=8.8 Score=32.96 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCC-EEEEEEECCCCCCC-CCCeEEEecC
Q 033979 17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANE-TFELQVDFPEHYPM-EAPQVINYTI 85 (107)
Q Consensus 17 ~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg-~f~~~i~fp~~YP~-~pP~v~f~t~ 85 (107)
.+-|.+|+.-|-.. ..++.++. +-.-+.-.+.+.+|-.-- +|- ..++.+.||.+||. .+|++.|..+
T Consensus 422 pQnLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 34466666665332 33444443 333455666777654322 333 34678889999995 7899999864
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=81.54 E-value=7.1 Score=29.37 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeeCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033979 15 IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYT 84 (107)
Q Consensus 15 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 84 (107)
...++|.+|+.++..+.. +.+..++++...++.+. +. ...-.++|.++.+||.++|.+...-
T Consensus 99 ~~ys~ll~EIe~IGW~kl--~~i~~d~~ls~i~l~~~--D~----~R~H~l~l~l~~~yp~~~p~~~~~~ 160 (291)
T PF09765_consen 99 QYYSNLLKEIEAIGWDKL--VQIQFDDDLSTIKLKIF--DS----SRQHYLELKLPSNYPFEPPSCSLDL 160 (291)
T ss_dssp GGC-CHHHHHHHHHCGCC--EEEEE-CCCSEEEEEEE--TT----CEEEEEEEETTTTTTTSEEEECS-T
T ss_pred HHHHHHHHHHHHhccccc--eEEecCCCccEEEEEEE--cC----CceEEEEEEECCCCCCCCceeeCCC
Confidence 345778999998876643 33333667777777776 21 2577889999999999999764443
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=81.45 E-value=6.7 Score=28.33 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=18.6
Q ss_pred EEEEEEECCCCCCCCCCeEE
Q 033979 62 TFELQVDFPEHYPMEAPQVI 81 (107)
Q Consensus 62 ~f~~~i~fp~~YP~~pP~v~ 81 (107)
.+.+.+.++.+||..+|-+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 88899999999999999993
No 37
>smart00340 HALZ homeobox associated leucin zipper.
Probab=70.39 E-value=4 Score=22.01 Aligned_cols=15 Identities=40% Similarity=0.472 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhC
Q 033979 16 ASNRLQKELVEWQVN 30 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~ 30 (107)
-.+||++|+++|...
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 468999999999765
No 38
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=64.06 E-value=5.7 Score=27.37 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=22.1
Q ss_pred EEEEECCCCCCCCCCeEEEecCcc---eecccC
Q 033979 64 ELQVDFPEHYPMEAPQVINYTIIF---FLVLNS 93 (107)
Q Consensus 64 ~~~i~fp~~YP~~pP~v~f~t~i~---Hpnv~~ 93 (107)
.+.|.|+.+||+.+|.|.+..+.| +||++.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~ 88 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP 88 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCC
Confidence 356889999999999877776433 466655
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=63.37 E-value=14 Score=24.68 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=22.6
Q ss_pred CCEEEEEEECCCCCC-CCCCeEEEec
Q 033979 60 NETFELQVDFPEHYP-MEAPQVINYT 84 (107)
Q Consensus 60 gg~f~~~i~fp~~YP-~~pP~v~f~t 84 (107)
.|.|.|.-.+|--|| ..||.|+|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 489999999999999 9999998864
No 40
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=60.46 E-value=16 Score=25.67 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCEEEEEEECCCCCCCCCCeEEEec
Q 033979 60 NETFELQVDFPEHYPMEAPQVINYT 84 (107)
Q Consensus 60 gg~f~~~i~fp~~YP~~pP~v~f~t 84 (107)
.|.|.|+=.||--||..+|.|+|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4899999999999999999999874
No 41
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=53.93 E-value=4.3 Score=34.71 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=0.0
Q ss_pred CEEEEEEECCCCCCCCCCeEEEecCcc
Q 033979 61 ETFELQVDFPEHYPMEAPQVINYTIIF 87 (107)
Q Consensus 61 g~f~~~i~fp~~YP~~pP~v~f~t~i~ 87 (107)
.+=-++|.+|.|||..+|.+.+.+.-|
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~~y 740 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRDEY 740 (799)
T ss_dssp ---------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHHHh
Confidence 344578999999999999998866544
No 42
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=53.26 E-value=26 Score=23.91 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCEEEEEEECCCCCC-----CCCCeEEEec
Q 033979 60 NETFELQVDFPEHYP-----MEAPQVINYT 84 (107)
Q Consensus 60 gg~f~~~i~fp~~YP-----~~pP~v~f~t 84 (107)
.|.|.|+-.+|--|| ..||.|+|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 489999999999999 8999998874
No 43
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=52.47 E-value=50 Score=25.54 Aligned_cols=28 Identities=18% Similarity=0.565 Sum_probs=23.0
Q ss_pred CCEEEEEEECCCCCCCCCCeEEEecCcce
Q 033979 60 NETFELQVDFPEHYPMEAPQVINYTIIFF 88 (107)
Q Consensus 60 gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 88 (107)
+=.|.+.|.+|..||...|.++|.+- ||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS~-yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQSV-YH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEee-cc
Confidence 44688889999999999999998763 44
No 44
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=50.37 E-value=25 Score=27.08 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=33.6
Q ss_pred cceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEe-cCcceec
Q 033979 43 LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINY-TIIFFLV 90 (107)
Q Consensus 43 ~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~Hpn 90 (107)
-..+++.| ||.|...+-++.|...||..||-+.|. ..-|+|.
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 34555555 688999999999999999999999996 3457774
No 45
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=50.25 E-value=15 Score=22.27 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 033979 15 IASNRLQKELVEW 27 (107)
Q Consensus 15 ~~~~RL~kEl~~l 27 (107)
..+|||+|+|+-|
T Consensus 59 SQLKRiQRdlrGL 71 (76)
T PF08203_consen 59 SQLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCCC
Confidence 3589999999876
No 46
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=49.91 E-value=64 Score=23.20 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeeCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCC-------------------C--
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY-------------------P-- 74 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~Y-------------------P-- 74 (107)
+..||...++++++.. .+...-|.+.+..-.+.-| || |.+-++|.++= -
T Consensus 10 ~~eR~~e~~~~~k~~L--------~~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~~ 79 (235)
T PF14135_consen 10 PAERINEALAEYKKIL--------TSAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRLK 79 (235)
T ss_pred HHHHHHHHHHHHHHHH--------hcCCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEEe
Confidence 5677777666655431 1122335555552222223 33 66666654433 2
Q ss_pred -CCCCeEEEec--CcceecccCCCC
Q 033979 75 -MEAPQVINYT--IIFFLVLNSYSL 96 (107)
Q Consensus 75 -~~pP~v~f~t--~i~Hpnv~~~~g 96 (107)
..-|.+.|.| ++.|--.+..++
T Consensus 80 ~~~gp~LsFdTyN~~iH~~s~p~~~ 104 (235)
T PF14135_consen 80 QDQGPVLSFDTYNEYIHYFSDPSNS 104 (235)
T ss_pred cCCceEEEEEeCCceEEEccCCCcc
Confidence 2348899988 478887666544
No 47
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.58 E-value=37 Score=24.12 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeE
Q 033979 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 80 (107)
...++||++|++++.+.-...++.-| -+..-.+.+.+..-+++ ..|.++=.+-|++
T Consensus 118 ~k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~-----------~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 118 VKDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT-----------EVPEKWDESGPKL 174 (203)
T ss_pred hhHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc-----------cCCcchhcCCCeE
Confidence 34689999999999998777777777 55567777777755543 3466665555543
No 48
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=48.26 E-value=44 Score=24.91 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=31.6
Q ss_pred CcceEEEEEEcCCCCCCCC---CEEEEEEEC-----CCCCCCCCCeEEEecCccee
Q 033979 42 NLQRWIIEVNGAPGTLYAN---ETFELQVDF-----PEHYPMEAPQVINYTIIFFL 89 (107)
Q Consensus 42 ~~~~w~~~i~gp~~tpy~g---g~f~~~i~f-----p~~YP~~pP~v~f~t~i~Hp 89 (107)
|..-|++.....+.-..+| ..|+.++.+ +.|-||++|+|+.+++-|-.
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 4556777666544444444 334555554 67999999999999985543
No 49
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=44.80 E-value=38 Score=23.93 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.8
Q ss_pred CCEEEEEEECCCCCCC-----CCCeEEEe
Q 033979 60 NETFELQVDFPEHYPM-----EAPQVINY 83 (107)
Q Consensus 60 gg~f~~~i~fp~~YP~-----~pP~v~f~ 83 (107)
.|.|.|+-.+|--||. .||.|+|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999998 88888775
No 50
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=44.07 E-value=13 Score=23.21 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=18.2
Q ss_pred cCcceecccCCCCeeeecccc
Q 033979 84 TIIFFLVLNSYSLAVWLPRNC 104 (107)
Q Consensus 84 t~i~Hpnv~~~~g~v~~p~~~ 104 (107)
.-.+||.+....-.||+|++=
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~ 54 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDP 54 (95)
T ss_pred hccCCHhHcCCCCeEEeecCC
Confidence 357899999999999999974
No 51
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=43.53 E-value=86 Score=21.20 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=37.5
Q ss_pred CCCCeEEee-CCCcceEEEEEEcCC-CCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 033979 31 PPAGFKHKV-TDNLQRWIIEVNGAP-GTLYANETFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 31 ~~~~~~~~~-~~~~~~w~~~i~gp~-~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
++.|..+.. +.|..++ ..-.|. -+-|.|-.=.+-+.=...||..+|++.|.|+
T Consensus 83 ~~~g~iLA~ye~n~rDf--LfP~p~~~~~~~g~~revLM~~t~~FpGIaPklEfST~ 137 (140)
T PF14909_consen 83 PPAGEILAYYEENTRDF--LFPEPKLTPSYPGVDREVLMKRTSGFPGIAPKLEFSTK 137 (140)
T ss_pred CCCCcEEEEEeccccce--EcCCCCCCCCCCCCCEEEEeeccCCCCCCCceEEEEEE
Confidence 444665555 6665533 233333 3457788888999999999999999999986
No 52
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=43.26 E-value=35 Score=26.25 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.4
Q ss_pred CEEEEEEECCCCCCCCCCeEEEecC
Q 033979 61 ETFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 61 g~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
-.+.+.+..+..||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5678899999999999999999875
No 53
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=41.26 E-value=32 Score=17.09 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=12.0
Q ss_pred hhcHHHHHHHHHHHHHH
Q 033979 11 ALSKIASNRLQKELVEW 27 (107)
Q Consensus 11 ~ms~~~~~RL~kEl~~l 27 (107)
.+|....++|++|+++.
T Consensus 13 G~sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 13 GKSPRLARLIRKEIERL 29 (30)
T ss_dssp SS-HHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHh
Confidence 35566778899998864
No 54
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=41.00 E-value=78 Score=21.96 Aligned_cols=63 Identities=10% Similarity=0.156 Sum_probs=35.7
Q ss_pred HHHHHHHHhhCC----CCCeEEeeCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 033979 20 LQKELVEWQVNP----PAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 20 L~kEl~~l~~~~----~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
..+|+..+.... ..|+.+.. .+.=...+.+.-|+-.|- --...++|.| .||-..||.|.|+.+
T Consensus 10 FdR~V~~~~~~~~a~r~rgwfLiq-a~fP~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 10 FDRQVGRFRPRADAYRMRGWFLIQ-ASFPTADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHhhhhhhhhHhhhcCeEEEE-ccCceEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 455666555432 24665553 111122333333444442 2335677777 789999999999976
No 55
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=40.08 E-value=21 Score=20.60 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhh
Q 033979 17 SNRLQKELVEWQV 29 (107)
Q Consensus 17 ~~RL~kEl~~l~~ 29 (107)
.+||+|||.++--
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4689999988743
No 56
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=39.70 E-value=52 Score=23.08 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.0
Q ss_pred CEEEEEEECCCCCCC-----CCCeEEEe
Q 033979 61 ETFELQVDFPEHYPM-----EAPQVINY 83 (107)
Q Consensus 61 g~f~~~i~fp~~YP~-----~pP~v~f~ 83 (107)
|.|.|+-.+|--||. .||.|+|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 889999999999995 88887775
No 57
>PF15572 Imm26: Immunity protein 26
Probab=39.18 E-value=35 Score=21.61 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=18.6
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCeEEEe
Q 033979 53 APGTLYANETFELQVDFPEHYPMEAPQVINY 83 (107)
Q Consensus 53 p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 83 (107)
+++.++.|.+|++ |..||++ +.|.|.
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFm 32 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFM 32 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEE
Confidence 4556778887775 5559988 777776
No 58
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=34.28 E-value=1.2e+02 Score=19.50 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=21.7
Q ss_pred hcHHHHHHHHHHHHHHhhCCCCCeEEee
Q 033979 12 LSKIASNRLQKELVEWQVNPPAGFKHKV 39 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~~~~~~~~~ 39 (107)
|+...+++...|+..+.+.-...+.+..
T Consensus 11 is~~~l~~fl~ev~~i~~~~~~~v~vi~ 38 (126)
T PF09967_consen 11 ISDEELRRFLSEVAGILRRFPAEVHVIQ 38 (126)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5667889999999999988655566554
No 59
>PHA03200 uracil DNA glycosylase; Provisional
Probab=34.04 E-value=46 Score=24.75 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=21.5
Q ss_pred cceEEEEEEcCCCCCCCCCEEE-EEEECCCCCCCCCCeEE
Q 033979 43 LQRWIIEVNGAPGTLYANETFE-LQVDFPEHYPMEAPQVI 81 (107)
Q Consensus 43 ~~~w~~~i~gp~~tpy~gg~f~-~~i~fp~~YP~~pP~v~ 81 (107)
..+.+|+|.|-+ ||.+|.=. +-+..+.+++. ||..+
T Consensus 82 ~~~vKVVIlGQD--PYh~gqA~GLaFSV~~~~~~-PpSL~ 118 (255)
T PHA03200 82 PEDVKVVIVGQD--PYHDGSACGLAFGTVRGRSA-PPSLK 118 (255)
T ss_pred hhheEEEEEecC--CCCCCccceEEEEeCCCCCC-CccHH
Confidence 345689999844 67664333 33445666664 77643
No 60
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=33.95 E-value=50 Score=20.34 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 033979 14 KIASNRLQKELVEWQV 29 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~ 29 (107)
+.+.+||.||+....+
T Consensus 6 t~~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5689999999887654
No 61
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=28.67 E-value=86 Score=16.68 Aligned_cols=18 Identities=39% Similarity=0.351 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHHHHHhhC
Q 033979 13 SKIASNRLQKELVEWQVN 30 (107)
Q Consensus 13 s~~~~~RL~kEl~~l~~~ 30 (107)
++.++|.|..|+..+.++
T Consensus 25 ~~~alkELIeELvNITqn 42 (43)
T PF03487_consen 25 SSTALKELIEELVNITQN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHhhccC
Confidence 355899999999988765
No 62
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=28.14 E-value=45 Score=25.65 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=19.0
Q ss_pred CCCCCCCCeEEEecCcceecccC
Q 033979 71 EHYPMEAPQVINYTIIFFLVLNS 93 (107)
Q Consensus 71 ~~YP~~pP~v~f~t~i~Hpnv~~ 93 (107)
+.=+..-|+|.|.-.+|||||-.
T Consensus 303 dgs~eds~rvV~~V~lwhpevq~ 325 (334)
T KOG3696|consen 303 DGSSEDSPRVVFTVDLWHPEVQP 325 (334)
T ss_pred CCCcccCceEEEEEeccCccccc
Confidence 34456889999999999999965
No 63
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=27.85 E-value=94 Score=17.58 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=12.9
Q ss_pred EEEEEEECCCCCCCCCCeEEEecC
Q 033979 62 TFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 62 ~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
.+...|.|++.|.. ||+|.+--.
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~i~ 24 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVSIN 24 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEEEE
Confidence 35678999999995 999866543
No 64
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=25.97 E-value=1.1e+02 Score=23.01 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=21.3
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 033979 60 NETFELQVDFPEHYP------------------MEAPQVINYT 84 (107)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (107)
.|.|.|+=.+|.-|| ..||.|+|.-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 489999999999997 6789888874
No 65
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.44 E-value=77 Score=17.78 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhC
Q 033979 15 IASNRLQKELVEWQVN 30 (107)
Q Consensus 15 ~~~~RL~kEl~~l~~~ 30 (107)
...+|++||++++++.
T Consensus 48 ~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 48 RRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567777888877664
No 66
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=24.80 E-value=1.3e+02 Score=21.81 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=20.7
Q ss_pred CCEEEEEEECCCCCCC-------CCCeEEEe
Q 033979 60 NETFELQVDFPEHYPM-------EAPQVINY 83 (107)
Q Consensus 60 gg~f~~~i~fp~~YP~-------~pP~v~f~ 83 (107)
.|.|.|+=..|--||. .||.|+|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4899999999999975 89999884
No 67
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=24.63 E-value=1.4e+02 Score=22.37 Aligned_cols=30 Identities=13% Similarity=0.386 Sum_probs=25.8
Q ss_pred CCCCCCCEEEEEEECCCCCCCCC--CeEEEec
Q 033979 55 GTLYANETFELQVDFPEHYPMEA--PQVINYT 84 (107)
Q Consensus 55 ~tpy~gg~f~~~i~fp~~YP~~p--P~v~f~t 84 (107)
.+.+.|..|++.+..|.+||-.- |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 45678999999999999999766 9998875
No 68
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=24.35 E-value=1.3e+02 Score=21.74 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=20.9
Q ss_pred CCEEEEEEECCCCCCC-------CCCeEEEe
Q 033979 60 NETFELQVDFPEHYPM-------EAPQVINY 83 (107)
Q Consensus 60 gg~f~~~i~fp~~YP~-------~pP~v~f~ 83 (107)
.|.|.|+=.+|--||. .||.|+|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4899999999999975 89999884
No 69
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=24.19 E-value=1.3e+02 Score=22.65 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=20.9
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 033979 60 NETFELQVDFPEHYP------------------MEAPQVINYT 84 (107)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (107)
.|.|.|+=.+|..|| ..||.|+|.-
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~V 226 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLKV 226 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEEE
Confidence 489999999999887 5888888864
No 70
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=23.98 E-value=1.5e+02 Score=19.97 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=21.2
Q ss_pred CCCcceEEEEEEcCCCCCCC-CCEEEEEEEC
Q 033979 40 TDNLQRWIIEVNGAPGTLYA-NETFELQVDF 69 (107)
Q Consensus 40 ~~~~~~w~~~i~gp~~tpy~-gg~f~~~i~f 69 (107)
..|...|.+.+.|++||+.. ...|-+.+.|
T Consensus 44 PGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCCcceEEEEECCCCcceeccccchheeeH
Confidence 45777889999999998874 4555544444
No 71
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=23.72 E-value=40 Score=23.31 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=15.2
Q ss_pred cCcceecccCCCCeeeecccccc
Q 033979 84 TIIFFLVLNSYSLAVWLPRNCRN 106 (107)
Q Consensus 84 t~i~Hpnv~~~~g~v~~p~~~~~ 106 (107)
.++|||+.|- |..+.=-||..
T Consensus 49 KPiYhP~~Dc--GD~VVV~N~~~ 69 (165)
T KOG3203|consen 49 KPIYHPSTDC--GDHVVVTNCKK 69 (165)
T ss_pred CCccCCccCC--CCEEEEecchh
Confidence 3789999887 66666666653
No 72
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=23.43 E-value=1.4e+02 Score=22.49 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.5
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 033979 60 NETFELQVDFPEHYP------------------MEAPQVINYT 84 (107)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (107)
.|.|.|+=..|.-|| ..||.|+|.-
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 214 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFMV 214 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEEE
Confidence 489999999999999 4799998874
No 73
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=22.92 E-value=1.4e+02 Score=22.47 Aligned_cols=25 Identities=8% Similarity=0.302 Sum_probs=21.1
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 033979 60 NETFELQVDFPEHYP------------------MEAPQVINYT 84 (107)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (107)
.|.|.|+=..|.-|| ..||.|+|.-
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 218 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFFV 218 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEEE
Confidence 489999999999997 5788888864
No 74
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=22.58 E-value=1.8e+02 Score=22.56 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=29.1
Q ss_pred eEEEEEEc-CCCCCCCCCEEEEEEE---CCCCCCCCCCeEEEec
Q 033979 45 RWIIEVNG-APGTLYANETFELQVD---FPEHYPMEAPQVINYT 84 (107)
Q Consensus 45 ~w~~~i~g-p~~tpy~gg~f~~~i~---fp~~YP~~pP~v~f~t 84 (107)
.|...+.| ++..-|++|.+++++. |-.-+- ..|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~q-R~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQ-RGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccc-cCCceEeeE
Confidence 58888999 4444788999999887 545554 566999865
No 75
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=21.97 E-value=77 Score=19.70 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=10.6
Q ss_pred cCCCCCCCCCEEEEEEECCCCC
Q 033979 52 GAPGTLYANETFELQVDFPEHY 73 (107)
Q Consensus 52 gp~~tpy~gg~f~~~i~fp~~Y 73 (107)
||+-.|=...+|+++ ||+++
T Consensus 1 G~d~~P~RdHVFhlt--FPkeW 20 (87)
T PF08675_consen 1 GPDPQPSRDHVFHLT--FPKEW 20 (87)
T ss_dssp SS----SGCCEEEEE----TT-
T ss_pred CCCCCCCcceEEEEe--CchHh
Confidence 677788888888876 88886
No 76
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=21.28 E-value=83 Score=25.60 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred CCCCEEEEEEEC-----CCCCCCCCCeEEEecCcceeccc
Q 033979 58 YANETFELQVDF-----PEHYPMEAPQVINYTIIFFLVLN 92 (107)
Q Consensus 58 y~gg~f~~~i~f-----p~~YP~~pP~v~f~t~i~Hpnv~ 92 (107)
.+||.|.+.|.+ +++||. .||||+-+
T Consensus 356 ~~~~~yElDLVLRnN~Tsee~P~---------GIFHPH~e 386 (489)
T TIGR01239 356 RRDGKYELDLVLRDNQTSEEYPD---------GIFHPHQD 386 (489)
T ss_pred ecCCceEEEEEeecCCCccccCC---------ccccCcHh
Confidence 458899999998 555664 69999754
No 77
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.54 E-value=2.7e+02 Score=22.55 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=34.5
Q ss_pred HHHhhCCCCCeEEeeCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCC
Q 033979 25 VEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPME 76 (107)
Q Consensus 25 ~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~ 76 (107)
+.|..+..+|..+.+|.....+.+++.|+++..--|....+ ..+|||.
T Consensus 76 ~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~v----d~~~pF~ 123 (532)
T KOG1954|consen 76 RYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVV----DAKKPFR 123 (532)
T ss_pred HHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeee----cCCCchh
Confidence 34555566788888877777889999999987777766554 4567763
No 78
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=20.21 E-value=1.1e+02 Score=19.53 Aligned_cols=20 Identities=20% Similarity=0.637 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCCCCCCCEEEEE
Q 033979 45 RWIIEVNGAPGTLYANETFELQ 66 (107)
Q Consensus 45 ~w~~~i~gp~~tpy~gg~f~~~ 66 (107)
+|.+.|-| +.+|+|..|.|.
T Consensus 2 kWkC~iCg--~~I~~gqlFTF~ 21 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTFT 21 (101)
T ss_pred ceEEEecC--CeeeecceEEEe
Confidence 69999975 568999999874
No 79
>COG1343 CRISPR-associated protein Cas2 [Defense mechanisms]
Probab=20.12 E-value=2.3e+02 Score=17.53 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=29.6
Q ss_pred hcHHHHHHHHHHHHHHhhCCCCCeEEeeCCCcceEEEEEEcCCCC
Q 033979 12 LSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGT 56 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~t 56 (107)
++.....+|.+++..+.......+.+.+-.+-..-...+.|++.+
T Consensus 39 l~~~~~~~l~~~~~kii~~~~Dsi~iy~~~~~~~~~~~~iG~~~~ 83 (89)
T COG1343 39 LTPADLEKLKRRLKKIIDEDEDSIRIYPLRRRAARTREVIGPEKS 83 (89)
T ss_pred cCHHHHHHHHHHHHhhhccccceEEEEEccchhhccceeccCCCC
Confidence 455678889999999988877777777622222234456665554
Done!