Query 033979
Match_columns 107
No_of_seqs 124 out of 1064
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:08:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zdn_A Ubiquitin-conjugating e 100.0 3.6E-35 1.2E-39 200.1 11.9 93 8-101 6-99 (158)
2 1yrv_A Ubiquitin-conjugating l 100.0 4E-35 1.4E-39 201.9 11.0 99 3-101 11-110 (169)
3 2ucz_A UBC7, ubiquitin conjuga 100.0 2.5E-34 8.5E-39 197.0 12.2 90 12-102 1-92 (165)
4 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.3E-34 4.6E-39 199.3 10.9 90 12-102 1-91 (169)
5 2e2c_A Ubiquitin conjugating e 100.0 1.5E-34 5E-39 196.7 10.7 89 13-102 7-96 (156)
6 2a7l_A Hypothetical ubiquitin- 100.0 1.2E-34 4.2E-39 193.4 9.2 97 3-101 11-112 (136)
7 2aak_A UBC1, ubiquitin conjuga 100.0 2.7E-34 9.2E-39 194.6 10.8 90 12-102 1-91 (152)
8 2bep_A Ubiquitin-conjugating e 100.0 4.6E-34 1.6E-38 194.7 11.7 92 11-102 4-99 (159)
9 4gpr_A Ubiquitin-conjugating e 100.0 8.8E-34 3E-38 191.9 12.2 87 14-101 3-90 (151)
10 2h2y_A Ubiquitin-conjugating e 100.0 9E-34 3.1E-38 189.1 12.0 92 9-102 15-108 (136)
11 2fo3_A Ubiquitin-conjugating e 100.0 6.2E-34 2.1E-38 187.5 10.9 87 15-102 6-94 (125)
12 2ayv_A Ubiquitin-conjugating e 100.0 6.9E-34 2.4E-38 195.3 11.3 93 9-102 15-108 (166)
13 2pwq_A Ubiquitin conjugating e 100.0 7E-34 2.4E-38 202.3 11.5 91 11-101 19-110 (216)
14 2c2v_B Ubiquitin-conjugating e 100.0 3.3E-34 1.1E-38 194.6 9.2 88 13-101 3-91 (154)
15 1i7k_A Ubiquitin-conjugating e 100.0 4.4E-34 1.5E-38 198.4 9.6 89 12-101 27-116 (179)
16 2c4o_A Ubiquitin-conjugating e 100.0 1.8E-33 6.1E-38 193.0 12.3 92 10-102 14-106 (165)
17 1z2u_A Ubiquitin-conjugating e 100.0 1E-33 3.4E-38 191.4 10.9 88 14-102 3-91 (150)
18 1yh2_A HSPC150 protein similar 100.0 1.8E-33 6.2E-38 193.6 12.2 88 14-102 3-91 (169)
19 3h8k_A Ubiquitin-conjugating e 100.0 1.5E-33 5.1E-38 192.9 11.5 88 14-102 2-91 (164)
20 2grr_A Ubiquitin-conjugating e 100.0 1.1E-33 3.9E-38 193.2 10.7 92 10-102 2-99 (161)
21 2f4z_A Tgtwinscan_2721 - E2 do 100.0 8.9E-34 3E-38 198.8 10.4 90 13-102 30-133 (193)
22 3rcz_B SUMO-conjugating enzyme 100.0 1.3E-33 4.3E-38 193.5 10.4 91 11-102 6-102 (163)
23 1fxt_A Ubiquitin-conjugating e 100.0 1.4E-33 4.7E-38 190.6 10.0 86 16-101 2-89 (149)
24 2gjd_A Ubiquitin-conjugating e 100.0 1.6E-33 5.3E-38 191.9 10.1 90 12-102 1-96 (157)
25 3k9o_A Ubiquitin-conjugating e 100.0 1.4E-33 4.9E-38 198.6 9.8 91 12-102 2-96 (201)
26 2awf_A Ubiquitin-conjugating e 100.0 2.7E-33 9.2E-38 193.2 10.4 89 13-102 15-105 (172)
27 3rz3_A Ubiquitin-conjugating e 100.0 4E-33 1.4E-37 194.0 11.2 88 14-102 6-95 (183)
28 1jat_B Ubiquitin-conjugating e 100.0 3.3E-33 1.1E-37 186.7 9.9 84 15-98 6-94 (138)
29 1jat_A Ubiquitin-conjugating e 100.0 1.7E-33 5.9E-38 191.2 8.5 86 16-102 6-92 (155)
30 2r0j_A Ubiquitin carrier prote 100.0 6.4E-33 2.2E-37 187.3 11.0 85 17-102 3-88 (149)
31 3bzh_A Ubiquitin-conjugating e 100.0 1.1E-32 3.8E-37 193.4 12.2 88 14-102 47-135 (194)
32 2a4d_A Ubiquitin-conjugating e 100.0 1.4E-32 4.8E-37 187.8 12.1 90 12-101 22-116 (160)
33 3e46_A Ubiquitin-conjugating e 100.0 8.5E-33 2.9E-37 200.6 11.6 94 9-102 51-148 (253)
34 3fn1_B NEDD8-conjugating enzym 100.0 1E-32 3.4E-37 189.4 9.9 90 11-102 10-101 (167)
35 2y9m_A Ubiquitin-conjugating e 100.0 4.1E-32 1.4E-36 187.3 11.2 92 11-102 2-107 (172)
36 2q0v_A Ubiquitin-conjugating e 100.0 4.8E-32 1.6E-36 184.5 10.7 86 12-98 18-108 (156)
37 1wzv_A Ubiquitin-conjugating e 100.0 3.7E-32 1.3E-36 184.6 9.3 86 15-102 4-91 (155)
38 4ds2_A Ubiquitin-conjugating e 100.0 1.3E-32 4.5E-37 188.9 6.0 91 10-101 3-108 (167)
39 2hlw_A Ubiquitin-conjugating e 100.0 6.3E-32 2.2E-36 186.2 8.1 88 14-101 34-126 (170)
40 2z5d_A Ubiquitin-conjugating e 100.0 8.8E-32 3E-36 186.8 8.7 91 8-101 16-108 (179)
41 2onu_A Ubiquitin-conjugating e 100.0 4.2E-32 1.5E-36 184.0 6.5 83 16-101 3-86 (152)
42 1tte_A Ubiquitin-conjugating e 100.0 1.3E-32 4.5E-37 195.6 4.1 87 16-102 3-91 (215)
43 2f4w_A Ubiquitin-conjugating e 100.0 3.7E-31 1.3E-35 184.7 10.5 95 1-101 3-98 (187)
44 1yf9_A Ubiquitin carrier prote 100.0 4E-31 1.4E-35 182.2 9.1 84 15-101 12-95 (171)
45 1y8x_A Ubiquitin-conjugating e 100.0 6.4E-31 2.2E-35 179.5 9.5 85 14-102 5-91 (160)
46 2nvu_C NEDD8-conjugating enzym 100.0 7.2E-31 2.5E-35 182.3 9.4 87 12-102 23-111 (180)
47 1c4z_D UBCH7, ubiquitin conjug 100.0 4.4E-31 1.5E-35 179.1 6.7 85 16-102 3-89 (154)
48 4ddg_A Ubiquitin-conjugating e 100.0 4.3E-30 1.5E-34 196.3 11.6 88 14-102 2-90 (399)
49 1zuo_A Hypothetical protein LO 100.0 2E-30 7E-35 180.8 6.8 95 7-102 19-130 (186)
50 3o2u_A NEDD8-conjugating enzym 100.0 1.4E-29 4.8E-34 177.1 8.9 85 13-101 27-119 (190)
51 3ceg_A Baculoviral IAP repeat- 100.0 4.4E-29 1.5E-33 186.0 11.7 92 10-102 71-172 (323)
52 2z6o_A UFM1-conjugating enzyme 99.9 9.7E-26 3.3E-30 153.8 0.1 81 14-101 31-123 (172)
53 3kpa_A Probable ubiquitin fold 99.6 3.8E-17 1.3E-21 109.7 1.9 81 14-101 33-125 (168)
54 3r3q_A Suppressor protein STP2 99.5 1.5E-13 5.2E-18 93.6 7.3 84 18-102 31-132 (162)
55 3obq_A Tumor susceptibility ge 99.1 4E-10 1.4E-14 75.5 7.9 76 21-102 26-114 (146)
56 2ebm_A RWD domain-containing p 96.9 0.0064 2.2E-07 38.7 7.6 68 16-84 11-78 (128)
57 2yz0_A Serine/threonine-protei 96.3 0.08 2.7E-06 33.9 10.3 69 16-85 11-86 (138)
58 2day_A Ring finger protein 25; 96.3 0.046 1.6E-06 34.6 8.8 67 19-85 12-83 (128)
59 2daw_A RWD domain containing p 95.9 0.069 2.4E-06 35.2 8.4 69 13-85 12-99 (154)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 95.8 0.099 3.4E-06 33.3 8.8 68 16-84 11-86 (137)
61 2ebk_A RWD domain-containing p 94.1 0.11 3.8E-06 32.9 5.2 64 20-84 12-79 (128)
62 2dax_A Protein C21ORF6; RWD do 91.0 0.15 5.2E-06 33.3 2.8 24 62-85 74-97 (152)
63 3zqs_A E3 ubiquitin-protein li 91.0 0.69 2.4E-05 31.7 6.1 58 18-86 4-63 (186)
64 3u3c_B Paxillin LD2 peptide; 4 64.7 6.4 0.00022 17.8 2.3 20 16-35 6-25 (26)
65 1m46_B IQ4, IQ4 motif from MYO 43.7 22 0.00076 15.9 2.2 14 15-28 8-21 (26)
66 2rf4_B DNA-directed RNA polyme 42.7 13 0.00046 22.2 1.8 13 15-27 62-74 (87)
67 2bum_A Protocatechuate 3,4-dio 40.6 30 0.001 23.7 3.6 25 60-84 110-139 (209)
68 3g9r_A Fusion complex of HIV-1 30.5 42 0.0014 17.0 2.2 14 16-29 29-42 (42)
69 2ccv_A Helix pomatia agglutini 28.9 72 0.0025 19.1 3.6 27 60-87 28-54 (101)
70 3kxt_A Chromatin protein CREN7 27.0 45 0.0015 18.1 2.1 23 47-75 34-56 (56)
71 2bum_B Protocatechuate 3,4-dio 24.1 49 0.0017 23.2 2.5 25 60-84 135-166 (241)
72 3mxz_A Tubulin-specific chaper 23.7 59 0.002 20.2 2.6 16 14-29 14-29 (116)
73 1qsd_A Protein (beta-tubulin b 23.2 62 0.0021 19.8 2.6 18 12-29 8-25 (106)
74 3t63_M 3,4-PCD, protocatechuat 22.8 54 0.0018 23.0 2.5 25 60-84 134-165 (238)
75 2lw9_A Unconventionnal myosin- 22.1 62 0.0021 17.2 2.1 15 16-30 7-21 (51)
76 3zs9_C Golgi to ER traffic pro 22.1 75 0.0026 15.9 2.3 17 12-28 4-20 (38)
77 2xsu_A Catechol 1,2 dioxygenas 22.0 57 0.0019 23.8 2.5 25 60-84 188-230 (312)
78 1h7c_A Tubulin-specific chaper 21.9 68 0.0023 19.6 2.6 16 14-29 13-28 (108)
79 3t63_A 3,4-PCD, protocatechuat 21.7 62 0.0021 22.0 2.6 23 61-83 102-129 (200)
80 3twe_A Alpha4H; unknown functi 21.6 55 0.0019 14.7 1.5 11 19-29 5-15 (27)
81 2azq_A Catechol 1,2-dioxygenas 20.7 62 0.0021 23.6 2.5 24 60-83 184-225 (311)
82 1tmx_A Hydroxyquinol 1,2-dioxy 20.7 63 0.0021 23.4 2.5 25 60-84 184-226 (293)
No 1
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.6e-35 Score=200.13 Aligned_cols=93 Identities=20% Similarity=0.337 Sum_probs=87.2
Q ss_pred CcchhcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCc
Q 033979 8 SRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTII 86 (107)
Q Consensus 8 ~~~~ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 86 (107)
+...||..+.+||+||+++|+++++.|+++.+ ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|
T Consensus 6 ~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 85 (158)
T 1zdn_A 6 NVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI 85 (158)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred cccccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCc
Confidence 45678899999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCeeeec
Q 033979 87 FFLVLNSYSLAVWLP 101 (107)
Q Consensus 87 ~Hpnv~~~~g~v~~p 101 (107)
|||||+.. |.||+.
T Consensus 86 ~HPnv~~~-G~iCl~ 99 (158)
T 1zdn_A 86 FHPNVGAN-GEICVN 99 (158)
T ss_dssp CCTTBCTT-SBBCHH
T ss_pred ccCCCCCC-CEEehh
Confidence 99999985 899874
No 2
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4e-35 Score=201.94 Aligned_cols=99 Identities=20% Similarity=0.350 Sum_probs=90.2
Q ss_pred CCCCCCcchhcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEE
Q 033979 3 SSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVI 81 (107)
Q Consensus 3 s~s~~~~~~ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~ 81 (107)
||.......|++.+.+||+||+++|+++++.|+++.+ ++|++.|+++|.||++|||+||+|+++|.||++||++||+|+
T Consensus 11 ~~~~~~~~~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~ 90 (169)
T 1yrv_A 11 SSGLVPRGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVK 90 (169)
T ss_dssp ----CCTTGGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEE
T ss_pred cccccccCccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcce
Confidence 4455567789988999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred EecCcceecccCCCCeeeec
Q 033979 82 NYTIIFFLVLNSYSLAVWLP 101 (107)
Q Consensus 82 f~t~i~Hpnv~~~~g~v~~p 101 (107)
|.|+||||||+..+|.||+.
T Consensus 91 F~T~i~HPNI~~~~G~ICL~ 110 (169)
T 1yrv_A 91 FITIPFHPNVDPHTGQPCID 110 (169)
T ss_dssp ESSCCCCTTBCTTTCCBCCH
T ss_pred ecCCCccCcccCCCCeEeeh
Confidence 99999999997678999875
No 3
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=2.5e-34 Score=197.05 Aligned_cols=90 Identities=28% Similarity=0.496 Sum_probs=84.5
Q ss_pred hcHHHHHHHHHHHHHHhhCCCCCeEEee-C-CCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCccee
Q 033979 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-T-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFL 89 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 89 (107)
|++.+.+||+||+++|+++++.|+++.+ + +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 80 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP 80 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence 6678899999999999999999999998 4 7999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeeeecc
Q 033979 90 VLNSYSLAVWLPR 102 (107)
Q Consensus 90 nv~~~~g~v~~p~ 102 (107)
||+. +|.||+.-
T Consensus 81 Nv~~-~G~iCl~i 92 (165)
T 2ucz_A 81 NIYP-NGEVCISI 92 (165)
T ss_dssp TBCT-TSBBCCGG
T ss_pred CCCC-CCcEeehh
Confidence 9998 69999864
No 4
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-34 Score=199.33 Aligned_cols=90 Identities=26% Similarity=0.440 Sum_probs=84.8
Q ss_pred hcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceec
Q 033979 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLV 90 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 90 (107)
||+.+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 80 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN 80 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence 4556889999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeecc
Q 033979 91 LNSYSLAVWLPR 102 (107)
Q Consensus 91 v~~~~g~v~~p~ 102 (107)
|+. +|.||+.-
T Consensus 81 I~~-~G~ICl~i 91 (169)
T 1ayz_A 81 VYA-NGEICLDI 91 (169)
T ss_dssp BCT-TSBBCCGG
T ss_pred CCC-CCeEeehh
Confidence 998 89998853
No 5
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-34 Score=196.70 Aligned_cols=89 Identities=27% Similarity=0.452 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecc
Q 033979 13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVL 91 (107)
Q Consensus 13 s~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 91 (107)
++.+.+||++|+++|+++++.|+++.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 7 ~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 86 (156)
T 2e2c_A 7 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV 86 (156)
T ss_dssp CCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCC
Confidence 344789999999999999999999998 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeecc
Q 033979 92 NSYSLAVWLPR 102 (107)
Q Consensus 92 ~~~~g~v~~p~ 102 (107)
+. +|.||+.-
T Consensus 87 ~~-~G~iCl~i 96 (156)
T 2e2c_A 87 DQ-SGNICLDI 96 (156)
T ss_dssp CT-TCBBCCGG
T ss_pred cc-CceEECcc
Confidence 98 79998753
No 6
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-34 Score=193.41 Aligned_cols=97 Identities=34% Similarity=0.634 Sum_probs=86.5
Q ss_pred CCCCCCcchhcHHHHHHHHHHHHHHhhCCCCCeEEe--e-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCe
Q 033979 3 SSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHK--V-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQ 79 (107)
Q Consensus 3 s~s~~~~~~ms~~~~~RL~kEl~~l~~~~~~~~~~~--~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~ 79 (107)
||.....+.|++. .+||+||++++++++++|+++. + ++|+++|+++|.||+||||+||.|+++|.||++||++||+
T Consensus 11 ~~~~~~~~~Ms~~-~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~ 89 (136)
T 2a7l_A 11 SSGLVPRGSMASM-QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQ 89 (136)
T ss_dssp ---CCCGGGGTTS-CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCE
T ss_pred ccccccchhccHH-HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCE
Confidence 3444566778764 4999999999999999999975 6 8899999999999999999999999999999999999999
Q ss_pred EEEecCcc--eecccCCCCeeeec
Q 033979 80 VINYTIIF--FLVLNSYSLAVWLP 101 (107)
Q Consensus 80 v~f~t~i~--Hpnv~~~~g~v~~p 101 (107)
|+|.|+|| |||||. +|.||+.
T Consensus 90 v~F~T~i~~~HPNV~~-~G~ICL~ 112 (136)
T 2a7l_A 90 VMFTGENIPVHPHVYS-NGHICLS 112 (136)
T ss_dssp EEEESSCCCCBTTBCT-TCBBCCG
T ss_pred EEEeCCCcCCCccCCC-CCeEEch
Confidence 99999999 999997 8999875
No 7
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=2.7e-34 Score=194.59 Aligned_cols=90 Identities=27% Similarity=0.455 Sum_probs=85.1
Q ss_pred hcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceec
Q 033979 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLV 90 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 90 (107)
||+.+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCC
Confidence 4556789999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeecc
Q 033979 91 LNSYSLAVWLPR 102 (107)
Q Consensus 91 v~~~~g~v~~p~ 102 (107)
|+. +|.||+.-
T Consensus 81 v~~-~G~iCl~i 91 (152)
T 2aak_A 81 IYA-DGSICLDI 91 (152)
T ss_dssp BCT-TSBBCCGG
T ss_pred CCC-CCEEechh
Confidence 998 89998853
No 8
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=4.6e-34 Score=194.74 Aligned_cols=92 Identities=27% Similarity=0.448 Sum_probs=86.5
Q ss_pred hhcHHHHHHHHHHHHHHhhC---CCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCc
Q 033979 11 ALSKIASNRLQKELVEWQVN---PPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTII 86 (107)
Q Consensus 11 ~ms~~~~~RL~kEl~~l~~~---~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 86 (107)
.|++.+.+||+||+++|+++ ++.|+++.+ ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|
T Consensus 4 ~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 83 (159)
T 2bep_A 4 AMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI 83 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCC
Confidence 57788999999999999985 578999999 88999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCeeeecc
Q 033979 87 FFLVLNSYSLAVWLPR 102 (107)
Q Consensus 87 ~Hpnv~~~~g~v~~p~ 102 (107)
|||||+..+|.||+.-
T Consensus 84 ~HPni~~~~G~iCl~i 99 (159)
T 2bep_A 84 WHPNISSVTGAICLDI 99 (159)
T ss_dssp CBTTBCTTTCBBCCGG
T ss_pred CccCCCCCCCEEeChh
Confidence 9999998789998753
No 9
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=8.8e-34 Score=191.95 Aligned_cols=87 Identities=31% Similarity=0.539 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceeccc
Q 033979 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLN 92 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 92 (107)
+.+.+||++|+++++++++.|+++.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 82 (151)
T 4gpr_A 3 AMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNIN 82 (151)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceEC
Confidence 56899999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeec
Q 033979 93 SYSLAVWLP 101 (107)
Q Consensus 93 ~~~g~v~~p 101 (107)
. +|.||+.
T Consensus 83 ~-~G~iCl~ 90 (151)
T 4gpr_A 83 K-NGVICLD 90 (151)
T ss_dssp T-TCBBCCG
T ss_pred C-CCEEEcc
Confidence 7 8999875
No 10
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=9e-34 Score=189.13 Aligned_cols=92 Identities=30% Similarity=0.518 Sum_probs=84.5
Q ss_pred cchhcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCc-
Q 033979 9 RKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTII- 86 (107)
Q Consensus 9 ~~~ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i- 86 (107)
...|+ .+.+||++|+++++++++.|+++.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 15 ~~~~~-~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 93 (136)
T 2h2y_A 15 KYNLG-NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPP 93 (136)
T ss_dssp CCCTT-SHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCC
T ss_pred hccch-HHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCC
Confidence 33444 3789999999999999999999998 89999999999999999999999999999999999999999999997
Q ss_pred ceecccCCCCeeeecc
Q 033979 87 FFLVLNSYSLAVWLPR 102 (107)
Q Consensus 87 ~Hpnv~~~~g~v~~p~ 102 (107)
|||||+. +|.||+.-
T Consensus 94 ~HPnv~~-~G~ICl~i 108 (136)
T 2h2y_A 94 KHTHVYS-NGDICLSV 108 (136)
T ss_dssp CCTTBCT-TCCBCCGG
T ss_pred CCCcCCC-CCEEECcc
Confidence 9999998 88998753
No 11
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=6.2e-34 Score=187.45 Aligned_cols=87 Identities=32% Similarity=0.536 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCc-ceeccc
Q 033979 15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTII-FFLVLN 92 (107)
Q Consensus 15 ~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~ 92 (107)
.+.+||+||+++++++++.|+++.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+
T Consensus 6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~ 85 (125)
T 2fo3_A 6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY 85 (125)
T ss_dssp ---CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCC
Confidence 3679999999999999999999998 89999999999999999999999999999999999999999999997 999999
Q ss_pred CCCCeeeecc
Q 033979 93 SYSLAVWLPR 102 (107)
Q Consensus 93 ~~~g~v~~p~ 102 (107)
. +|.||+.-
T Consensus 86 ~-~G~iCl~i 94 (125)
T 2fo3_A 86 S-NGDICLSL 94 (125)
T ss_dssp T-TSBBCCGG
T ss_pred C-CCEEEchh
Confidence 7 89998753
No 12
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=6.9e-34 Score=195.27 Aligned_cols=93 Identities=27% Similarity=0.447 Sum_probs=84.2
Q ss_pred cchhcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcc
Q 033979 9 RKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIF 87 (107)
Q Consensus 9 ~~~ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 87 (107)
.....+.+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 15 ~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 94 (166)
T 2ayv_A 15 ENLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIY 94 (166)
T ss_dssp ----CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred ccccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCc
Confidence 3344456889999999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCeeeecc
Q 033979 88 FLVLNSYSLAVWLPR 102 (107)
Q Consensus 88 Hpnv~~~~g~v~~p~ 102 (107)
||||+. +|.||+.-
T Consensus 95 HPNI~~-~G~ICL~i 108 (166)
T 2ayv_A 95 HPNINS-QGAICLDI 108 (166)
T ss_dssp BTTBCT-TCBBCCGG
T ss_pred CCcCCC-CCeEEccc
Confidence 999997 78998753
No 13
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=7e-34 Score=202.29 Aligned_cols=91 Identities=25% Similarity=0.395 Sum_probs=86.0
Q ss_pred hhcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCccee
Q 033979 11 ALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFL 89 (107)
Q Consensus 11 ~ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 89 (107)
.+++.+.+||+||+++|+++++.|+++.+ ++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus 19 ~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HP 98 (216)
T 2pwq_A 19 FQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHP 98 (216)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCC
Confidence 34466899999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeeeec
Q 033979 90 VLNSYSLAVWLP 101 (107)
Q Consensus 90 nv~~~~g~v~~p 101 (107)
||+..+|.||+.
T Consensus 99 NI~~~~G~ICL~ 110 (216)
T 2pwq_A 99 NISSQTGAICLD 110 (216)
T ss_dssp TBCTTTCBBCCH
T ss_pred CCcCCCCEEEch
Confidence 999878999874
No 14
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.3e-34 Score=194.65 Aligned_cols=88 Identities=26% Similarity=0.392 Sum_probs=82.7
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecc
Q 033979 13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVL 91 (107)
Q Consensus 13 s~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 91 (107)
|..+.+||++|+++|+++++.|+++.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 3 s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 82 (154)
T 2c2v_B 3 SAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 82 (154)
T ss_dssp SCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcC
Confidence 334579999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeec
Q 033979 92 NSYSLAVWLP 101 (107)
Q Consensus 92 ~~~~g~v~~p 101 (107)
+. +|.||+.
T Consensus 83 ~~-~G~iCl~ 91 (154)
T 2c2v_B 83 DK-LGRICLD 91 (154)
T ss_dssp CT-TCBBCCH
T ss_pred cc-CCeEEch
Confidence 97 6899874
No 15
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.4e-34 Score=198.35 Aligned_cols=89 Identities=28% Similarity=0.497 Sum_probs=83.0
Q ss_pred hcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceec
Q 033979 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLV 90 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 90 (107)
|++.+.+||++|+++|+++++.||++.+ ++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 106 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN 106 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence 6778899999999999999999999998 889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeec
Q 033979 91 LNSYSLAVWLP 101 (107)
Q Consensus 91 v~~~~g~v~~p 101 (107)
|+. +|.||+.
T Consensus 107 V~~-~G~ICL~ 116 (179)
T 1i7k_A 107 VDT-QGNISLD 116 (179)
T ss_dssp BCT-TCBBCCG
T ss_pred ccc-CCeEEcc
Confidence 998 7999875
No 16
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.8e-33 Score=193.01 Aligned_cols=92 Identities=27% Similarity=0.465 Sum_probs=85.1
Q ss_pred chhcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcce
Q 033979 10 KALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFF 88 (107)
Q Consensus 10 ~~ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 88 (107)
+...+.+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 14 ~~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~H 93 (165)
T 2c4o_A 14 VPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 93 (165)
T ss_dssp --CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred ccCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcC
Confidence 334466899999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCeeeecc
Q 033979 89 LVLNSYSLAVWLPR 102 (107)
Q Consensus 89 pnv~~~~g~v~~p~ 102 (107)
|||+. +|.||+.-
T Consensus 94 PnV~~-~G~ICl~i 106 (165)
T 2c4o_A 94 PNINS-NGSICLDI 106 (165)
T ss_dssp TTBCT-TCBBCCGG
T ss_pred CcCCC-CCeEeehh
Confidence 99998 79998753
No 17
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=1e-33 Score=191.41 Aligned_cols=88 Identities=32% Similarity=0.539 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceeccc
Q 033979 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLN 92 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 92 (107)
..+.+||++|+++|+++++.|+++.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (150)
T 1z2u_A 3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC
Confidence 34789999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeecc
Q 033979 93 SYSLAVWLPR 102 (107)
Q Consensus 93 ~~~g~v~~p~ 102 (107)
. +|.||+.-
T Consensus 83 ~-~G~iCl~i 91 (150)
T 1z2u_A 83 S-NGSICLDI 91 (150)
T ss_dssp T-TCBBCCGG
T ss_pred C-CCeEeecc
Confidence 7 79998753
No 18
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-33 Score=193.56 Aligned_cols=88 Identities=28% Similarity=0.457 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceeccc
Q 033979 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLN 92 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 92 (107)
..+.+||++|+++|+++++.|+++.+ ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~ 82 (169)
T 1yh2_A 3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID 82 (169)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCC
Confidence 56789999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeecc
Q 033979 93 SYSLAVWLPR 102 (107)
Q Consensus 93 ~~~g~v~~p~ 102 (107)
. +|.||+.-
T Consensus 83 ~-~G~iCl~i 91 (169)
T 1yh2_A 83 S-AGRICLDV 91 (169)
T ss_dssp T-TCBBCCGG
T ss_pred c-CCeEeccc
Confidence 5 79999853
No 19
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.5e-33 Score=192.93 Aligned_cols=88 Identities=23% Similarity=0.376 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-CC-CcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecc
Q 033979 14 KIASNRLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVL 91 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 91 (107)
+.+.+||+||+++++++++.|+++.+ ++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 35789999999999999999999998 54 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeecc
Q 033979 92 NSYSLAVWLPR 102 (107)
Q Consensus 92 ~~~~g~v~~p~ 102 (107)
+. +|.||+.-
T Consensus 82 ~~-~G~iCl~i 91 (164)
T 3h8k_A 82 YP-DGRVCISI 91 (164)
T ss_dssp CT-TSBBCCGG
T ss_pred CC-CCcEeeec
Confidence 96 89998854
No 20
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.1e-33 Score=193.19 Aligned_cols=92 Identities=28% Similarity=0.438 Sum_probs=84.8
Q ss_pred chhcHHHHHHHHHHHHHHhhCCCCCeEEee-C-----CCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEe
Q 033979 10 KALSKIASNRLQKELVEWQVNPPAGFKHKV-T-----DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINY 83 (107)
Q Consensus 10 ~~ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~-----~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 83 (107)
+.|++.+.+||+||+++|+++++.|+.+.+ + +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.
T Consensus 2 ~~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 81 (161)
T 2grr_A 2 SHMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE 81 (161)
T ss_dssp --CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe
Confidence 347888999999999999999999999987 4 5899999999999999999999999999999999999999999
Q ss_pred cCcceecccCCCCeeeecc
Q 033979 84 TIIFFLVLNSYSLAVWLPR 102 (107)
Q Consensus 84 t~i~Hpnv~~~~g~v~~p~ 102 (107)
|+||||||+. +|.||+.-
T Consensus 82 t~i~HPnv~~-~G~iCl~i 99 (161)
T 2grr_A 82 PPLFHPNVYP-SGTVCLSI 99 (161)
T ss_dssp SCCCSTTBCT-TSBBCCGG
T ss_pred cCcccCCCCC-CCeEeehh
Confidence 9999999996 79998864
No 21
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=8.9e-34 Score=198.80 Aligned_cols=90 Identities=27% Similarity=0.409 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHHHhhCCC-------------CCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCC
Q 033979 13 SKIASNRLQKELVEWQVNPP-------------AGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAP 78 (107)
Q Consensus 13 s~~~~~RL~kEl~~l~~~~~-------------~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP 78 (107)
+..+.+||+||+++|+++++ .|+++.+ ++|++.|+++|.||++|||+||+|+++|.||++||++||
T Consensus 30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 109 (193)
T 2f4z_A 30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP 109 (193)
T ss_dssp --CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence 34578999999999999976 7999999 889999999999999999999999999999999999999
Q ss_pred eEEEecCcceecccCCCCeeeecc
Q 033979 79 QVINYTIIFFLVLNSYSLAVWLPR 102 (107)
Q Consensus 79 ~v~f~t~i~Hpnv~~~~g~v~~p~ 102 (107)
+|+|.|+||||||+..+|.||+.-
T Consensus 110 ~V~F~T~i~HPNI~~~~G~ICL~i 133 (193)
T 2f4z_A 110 KMKFVTKIWHPNISSQTGAICLDI 133 (193)
T ss_dssp EEEESSCCCBTTBCTTTCBBCCGG
T ss_pred eEEEecCCccCCCcCCCCEEECcc
Confidence 999999999999998789998753
No 22
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-33 Score=193.46 Aligned_cols=91 Identities=29% Similarity=0.519 Sum_probs=83.1
Q ss_pred hhcHHHHHHHHHHHHHHhhCCCCCeEEee-CC-----CcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033979 11 ALSKIASNRLQKELVEWQVNPPAGFKHKV-TD-----NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYT 84 (107)
Q Consensus 11 ~ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~-----~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 84 (107)
+-|..+.+||+||+++|+++++.|+++.+ ++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t 85 (163)
T 3rcz_B 6 HHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP 85 (163)
T ss_dssp ---CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence 34567899999999999999999999998 54 8999999999999999999999999999999999999999999
Q ss_pred CcceecccCCCCeeeecc
Q 033979 85 IIFFLVLNSYSLAVWLPR 102 (107)
Q Consensus 85 ~i~Hpnv~~~~g~v~~p~ 102 (107)
+||||||+. +|.||+.-
T Consensus 86 ~i~HPnV~~-~G~iCl~i 102 (163)
T 3rcz_B 86 PLFHPNVYP-SGTVCLSI 102 (163)
T ss_dssp CCCSTTBCT-TSBBCCGG
T ss_pred CCccCCCCC-CCcEeccc
Confidence 999999995 88998753
No 23
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1.4e-33 Score=190.56 Aligned_cols=86 Identities=22% Similarity=0.419 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-CC-CcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccC
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNS 93 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 93 (107)
+.+||++|+++|+++++.|+++.+ ++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 469999999999999999999999 65 9999999999999999999999999999999999999999999999999998
Q ss_pred CCCeeeec
Q 033979 94 YSLAVWLP 101 (107)
Q Consensus 94 ~~g~v~~p 101 (107)
.+|.||+.
T Consensus 82 ~~G~iCl~ 89 (149)
T 1fxt_A 82 VTGAICLD 89 (149)
T ss_dssp SSCCBCCH
T ss_pred CCCeEeCC
Confidence 78999874
No 24
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.6e-33 Score=191.85 Aligned_cols=90 Identities=28% Similarity=0.519 Sum_probs=82.6
Q ss_pred hcHHHHHHHHHHHHHHhhCCCCCeEEee-C-----CCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 033979 12 LSKIASNRLQKELVEWQVNPPAGFKHKV-T-----DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~-----~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
||+.+.+||++|+++|+++++.|+++.+ + +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 5566889999999999999999999988 4 389999999999999999999999999999999999999999999
Q ss_pred cceecccCCCCeeeecc
Q 033979 86 IFFLVLNSYSLAVWLPR 102 (107)
Q Consensus 86 i~Hpnv~~~~g~v~~p~ 102 (107)
||||||+. +|.||+.-
T Consensus 81 i~HPnv~~-~G~iCl~i 96 (157)
T 2gjd_A 81 FYHPNVYP-SGTICLSI 96 (157)
T ss_dssp CCCTTBCT-TSBBCCGG
T ss_pred CccCCCCC-CCcEeeec
Confidence 99999996 79998763
No 25
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=1.4e-33 Score=198.61 Aligned_cols=91 Identities=26% Similarity=0.444 Sum_probs=84.0
Q ss_pred hcHHHHHHHHHHHHHHhhC---CCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcc
Q 033979 12 LSKIASNRLQKELVEWQVN---PPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIF 87 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~---~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 87 (107)
||+.+.+||+||+++|+++ ++.|+++.+ ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 6667899999999999987 478999999 889999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCeeeecc
Q 033979 88 FLVLNSYSLAVWLPR 102 (107)
Q Consensus 88 Hpnv~~~~g~v~~p~ 102 (107)
||||+..+|.||+.-
T Consensus 82 HPnv~~~~G~iCl~i 96 (201)
T 3k9o_A 82 HPNISSVTGAICLDI 96 (201)
T ss_dssp BTTBCTTTCBBCCGG
T ss_pred cCCCcCCCCeeeCcc
Confidence 999998899999853
No 26
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=2.7e-33 Score=193.24 Aligned_cols=89 Identities=28% Similarity=0.528 Sum_probs=83.5
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEee-C-CCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceec
Q 033979 13 SKIASNRLQKELVEWQVNPPAGFKHKV-T-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLV 90 (107)
Q Consensus 13 s~~~~~RL~kEl~~l~~~~~~~~~~~~-~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 90 (107)
++.+.+||+||+++|+++++.||++.+ + +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPN 94 (172)
T 2awf_A 15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPN 94 (172)
T ss_dssp CCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCC
Confidence 456799999999999999999999998 4 79999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeecc
Q 033979 91 LNSYSLAVWLPR 102 (107)
Q Consensus 91 v~~~~g~v~~p~ 102 (107)
|+. +|.||+.-
T Consensus 95 V~~-~G~IClsi 105 (172)
T 2awf_A 95 VDK-NGDVCISI 105 (172)
T ss_dssp BCT-TCBBCCGG
T ss_pred CCC-CCcEehhh
Confidence 998 59999853
No 27
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=4e-33 Score=194.01 Aligned_cols=88 Identities=25% Similarity=0.439 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEe-e-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecc
Q 033979 14 KIASNRLQKELVEWQVNPPAGFKHK-V-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVL 91 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~~~~~~~~~-~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 91 (107)
+.+.+||++|+++|+++++.|+++. + ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 6 ~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV 85 (183)
T 3rz3_A 6 PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI 85 (183)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCC
Confidence 4579999999999999999999999 4 7899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeecc
Q 033979 92 NSYSLAVWLPR 102 (107)
Q Consensus 92 ~~~~g~v~~p~ 102 (107)
+. +|.||+.-
T Consensus 86 ~~-~G~iClsi 95 (183)
T 3rz3_A 86 YE-TGDVCISI 95 (183)
T ss_dssp CT-TSBBCCTT
T ss_pred CC-CCcEehhh
Confidence 98 89999854
No 28
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=3.3e-33 Score=186.73 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhhC-CCCCeEEee-C-C--CcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCccee
Q 033979 15 IASNRLQKELVEWQVN-PPAGFKHKV-T-D--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFL 89 (107)
Q Consensus 15 ~~~~RL~kEl~~l~~~-~~~~~~~~~-~-~--~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 89 (107)
.+.+||+||+++++++ ++.|+++.+ + + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 85 (138)
T 1jat_B 6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLP 85 (138)
T ss_dssp CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccC
Confidence 3569999999999998 789999988 3 4 489999999999999999999999999999999999999999999999
Q ss_pred cccCCCCee
Q 033979 90 VLNSYSLAV 98 (107)
Q Consensus 90 nv~~~~g~v 98 (107)
||+.++|.|
T Consensus 86 nv~~~~G~i 94 (138)
T 1jat_B 86 CVNPTTGEV 94 (138)
T ss_dssp TBCTTTCBB
T ss_pred CEeCCCCEE
Confidence 999988998
No 29
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.7e-33 Score=191.22 Aligned_cols=86 Identities=28% Similarity=0.470 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccCC
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSY 94 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 94 (107)
+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+ .
T Consensus 6 ~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 84 (155)
T 1jat_A 6 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID-R 84 (155)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC-C
Confidence 469999999999999999999999 88999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeeeecc
Q 033979 95 SLAVWLPR 102 (107)
Q Consensus 95 ~g~v~~p~ 102 (107)
+|.||+.-
T Consensus 85 ~G~iCl~i 92 (155)
T 1jat_A 85 LGRICLDV 92 (155)
T ss_dssp TCCBCCGG
T ss_pred CCEEEchh
Confidence 89998753
No 30
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=6.4e-33 Score=187.35 Aligned_cols=85 Identities=31% Similarity=0.507 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccCCC
Q 033979 17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSYS 95 (107)
Q Consensus 17 ~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~ 95 (107)
.+||+||+++|+++++.|+++.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+. +
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~ 81 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK-L 81 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-T
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC-C
Confidence 58999999999999999999999 899999999999999999999999999999999999999999999999999998 5
Q ss_pred Ceeeecc
Q 033979 96 LAVWLPR 102 (107)
Q Consensus 96 g~v~~p~ 102 (107)
|.||+.-
T Consensus 82 G~iCl~i 88 (149)
T 2r0j_A 82 GRICLDI 88 (149)
T ss_dssp CBBCCGG
T ss_pred CEEechh
Confidence 8998753
No 31
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.1e-32 Score=193.38 Aligned_cols=88 Identities=30% Similarity=0.559 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceeccc
Q 033979 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLN 92 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 92 (107)
+.+.+||++|+++|+++++.||++.+ ++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 45789999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeecc
Q 033979 93 SYSLAVWLPR 102 (107)
Q Consensus 93 ~~~g~v~~p~ 102 (107)
. +|.||+.-
T Consensus 127 ~-~G~ICL~i 135 (194)
T 3bzh_A 127 S-QGVICLDI 135 (194)
T ss_dssp T-TCBBCCGG
T ss_pred C-CCceechh
Confidence 7 69998753
No 32
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=1.4e-32 Score=187.81 Aligned_cols=90 Identities=28% Similarity=0.327 Sum_probs=82.0
Q ss_pred hcHHHHHHHHHHHHHHhhCCCCC-eEEee--CCC--cceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCc
Q 033979 12 LSKIASNRLQKELVEWQVNPPAG-FKHKV--TDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTII 86 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~~~~-~~~~~--~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 86 (107)
+...+.+||+||+++|++++++| +++.+ ++| +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|
T Consensus 22 v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i 101 (160)
T 2a4d_A 22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 101 (160)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred eechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCc
Confidence 44668899999999999998888 77776 444 89999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCeeeec
Q 033979 87 FFLVLNSYSLAVWLP 101 (107)
Q Consensus 87 ~Hpnv~~~~g~v~~p 101 (107)
|||||+..+|.||+.
T Consensus 102 ~HPNV~~~~G~ICl~ 116 (160)
T 2a4d_A 102 NMNGVNSSNGVVDPR 116 (160)
T ss_dssp CCTTBCTTTCBBCGG
T ss_pred eeCCEECCCCEEehh
Confidence 999999778999864
No 33
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=8.5e-33 Score=200.56 Aligned_cols=94 Identities=26% Similarity=0.418 Sum_probs=87.6
Q ss_pred cchhcHHHHHHHHHHHHHHhhC---CCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033979 9 RKALSKIASNRLQKELVEWQVN---PPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYT 84 (107)
Q Consensus 9 ~~~ms~~~~~RL~kEl~~l~~~---~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 84 (107)
...|++.+.+||+||+++|+++ ++.|+++.+ ++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 51 ~~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T 130 (253)
T 3e46_A 51 EFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT 130 (253)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred cccccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecC
Confidence 3568889999999999999987 478999999 899999999999999999999999999999999999999999999
Q ss_pred CcceecccCCCCeeeecc
Q 033979 85 IIFFLVLNSYSLAVWLPR 102 (107)
Q Consensus 85 ~i~Hpnv~~~~g~v~~p~ 102 (107)
+||||||+..+|.||+.-
T Consensus 131 ~i~HPNV~~~~G~ICL~i 148 (253)
T 3e46_A 131 KIWHPNISSVTGAICLDI 148 (253)
T ss_dssp CCCBTTBCTTTCBBCCGG
T ss_pred CCccCCccCCCCeeeccc
Confidence 999999998899999753
No 34
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=99.98 E-value=1e-32 Score=189.37 Aligned_cols=90 Identities=21% Similarity=0.344 Sum_probs=82.9
Q ss_pred hhcHHHHHHHHHHHHHHhhCCCCCeEEee--CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcce
Q 033979 11 ALSKIASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFF 88 (107)
Q Consensus 11 ~ms~~~~~RL~kEl~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 88 (107)
..++.+.+||+||+++|+++++.|+++.+ ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 10 ~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 88 (167)
T 3fn1_B 10 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWH 88 (167)
T ss_dssp CCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCC
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCccc
Confidence 34456899999999999999999999986 67899999988 8999999999999999999999999999999999999
Q ss_pred ecccCCCCeeeecc
Q 033979 89 LVLNSYSLAVWLPR 102 (107)
Q Consensus 89 pnv~~~~g~v~~p~ 102 (107)
|||+. +|.||+.-
T Consensus 89 Pnv~~-~G~iCl~i 101 (167)
T 3fn1_B 89 PNITE-TGEICLSL 101 (167)
T ss_dssp SSBCT-TCCBCCGG
T ss_pred CCCCC-CCEEechh
Confidence 99995 89998864
No 35
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=99.98 E-value=4.1e-32 Score=187.28 Aligned_cols=92 Identities=22% Similarity=0.344 Sum_probs=81.2
Q ss_pred hhcHHHHHHHHHHHHHHhh-C-C------CC---CeEEee--CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCC
Q 033979 11 ALSKIASNRLQKELVEWQV-N-P------PA---GFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77 (107)
Q Consensus 11 ~ms~~~~~RL~kEl~~l~~-~-~------~~---~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~p 77 (107)
.|++.+.+||+||+++|++ . + +. ++.+.+ ++|+++|+++|.||++|||+||+|+++|.||++||++|
T Consensus 2 ~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~P 81 (172)
T 2y9m_A 2 AMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP 81 (172)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred CCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCC
Confidence 5788899999999999998 4 3 33 456666 67999999999999999999999999999999999999
Q ss_pred CeEEEec-CcceecccCCCCeeeecc
Q 033979 78 PQVINYT-IIFFLVLNSYSLAVWLPR 102 (107)
Q Consensus 78 P~v~f~t-~i~Hpnv~~~~g~v~~p~ 102 (107)
|+|+|.| +||||||+..+|.||+.-
T Consensus 82 P~v~f~t~~i~HPni~~~~G~iCl~i 107 (172)
T 2y9m_A 82 PKISFMQNNILHCNVKSATGEICLNI 107 (172)
T ss_dssp CEEEECTTSCCCTTEETTTTEECCGG
T ss_pred CEEEEeeCCeecCCCcCCCCEEeccc
Confidence 9999999 999999987789999864
No 36
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=99.97 E-value=4.8e-32 Score=184.52 Aligned_cols=86 Identities=27% Similarity=0.351 Sum_probs=79.1
Q ss_pred hcHHHHHHHHHHHHHHhhC-CCCCeEEee-C-C--CcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCc
Q 033979 12 LSKIASNRLQKELVEWQVN-PPAGFKHKV-T-D--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTII 86 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~-~~~~~~~~~-~-~--~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 86 (107)
.+..+.+||+||+++++++ ++.|+++.+ . + |++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|
T Consensus 18 ~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i 97 (156)
T 2q0v_A 18 GIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI 97 (156)
T ss_dssp SCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred ccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccc
Confidence 3345789999999999999 888999988 3 3 499999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCee
Q 033979 87 FFLVLNSYSLAV 98 (107)
Q Consensus 87 ~Hpnv~~~~g~v 98 (107)
|||||+.. |.|
T Consensus 98 ~HPNV~~~-G~i 108 (156)
T 2q0v_A 98 EMSCVDNC-GRV 108 (156)
T ss_dssp CCTTBCTT-SBB
T ss_pred ccCCCccC-CeE
Confidence 99999985 888
No 37
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=99.97 E-value=3.7e-32 Score=184.56 Aligned_cols=86 Identities=27% Similarity=0.464 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEE-ee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceeccc
Q 033979 15 IASNRLQKELVEWQVNPPAGFKH-KV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLN 92 (107)
Q Consensus 15 ~~~~RL~kEl~~l~~~~~~~~~~-~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 92 (107)
.+.+||++|+++|+++++.|+.+ .+ ++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 82 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence 36899999999999999999999 56 889999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCeeeecc
Q 033979 93 SYSLAVWLPR 102 (107)
Q Consensus 93 ~~~g~v~~p~ 102 (107)
. +|.||+.-
T Consensus 83 ~-~G~iCl~i 91 (155)
T 1wzv_A 83 E-NGQICLPI 91 (155)
T ss_dssp T-TCBCCCGG
T ss_pred C-CCeEeecC
Confidence 8 89999864
No 38
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=99.97 E-value=1.3e-32 Score=188.88 Aligned_cols=91 Identities=23% Similarity=0.407 Sum_probs=83.2
Q ss_pred chhcHHHHHHHHHHHHHHhhCC------------CCCeEEee-CCCcceEEEEEEcCCCCCCC--CCEEEEEEECCCCCC
Q 033979 10 KALSKIASNRLQKELVEWQVNP------------PAGFKHKV-TDNLQRWIIEVNGAPGTLYA--NETFELQVDFPEHYP 74 (107)
Q Consensus 10 ~~ms~~~~~RL~kEl~~l~~~~------------~~~~~~~~-~~~~~~w~~~i~gp~~tpy~--gg~f~~~i~fp~~YP 74 (107)
..||+.+.+||+||+++|++++ ..++.+.+ ++|+++|+++|.||++|||+ ||.|+++|.||++||
T Consensus 3 ~~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP 82 (167)
T 4ds2_A 3 GSMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYP 82 (167)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTT
T ss_pred ccccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCC
Confidence 4566678899999999999977 77899988 89999999999999999999 999999999999999
Q ss_pred CCCCeEEEecCcceecccCCCCeeeec
Q 033979 75 MEAPQVINYTIIFFLVLNSYSLAVWLP 101 (107)
Q Consensus 75 ~~pP~v~f~t~i~Hpnv~~~~g~v~~p 101 (107)
++||+|+|.|+||||||+. +|.||+-
T Consensus 83 ~~pP~v~f~t~i~HPnv~~-~G~iCl~ 108 (167)
T 4ds2_A 83 HEPPTVRFVTPVYSPLVTG-EGGICDR 108 (167)
T ss_dssp TSCCEEEESSCCCCSSCCT-TSCCCTH
T ss_pred CCCCEEEEeCCcccccCCC-CCEEEcc
Confidence 9999999999999999995 8889863
No 39
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=99.97 E-value=6.3e-32 Score=186.16 Aligned_cols=88 Identities=28% Similarity=0.327 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCC-eEEee--CCC--cceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcce
Q 033979 14 KIASNRLQKELVEWQVNPPAG-FKHKV--TDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFF 88 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~~~~~-~~~~~--~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 88 (107)
..+.+||+||+++|+++++.| +++.+ ++| +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 346899999999999998888 66765 444 8999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCeeeec
Q 033979 89 LVLNSYSLAVWLP 101 (107)
Q Consensus 89 pnv~~~~g~v~~p 101 (107)
|||+..+|.||+.
T Consensus 114 PNV~~~~G~ICl~ 126 (170)
T 2hlw_A 114 NGVNSSNGVVDPR 126 (170)
T ss_dssp SSBCSSSCBBCTT
T ss_pred CCEeCCCCEEEhh
Confidence 9999778999864
No 40
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=99.97 E-value=8.8e-32 Score=186.75 Aligned_cols=91 Identities=21% Similarity=0.448 Sum_probs=77.6
Q ss_pred CcchhcH--HHHHHHHHHHHHHhhCCCCCeEEeeCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 033979 8 SRKALSK--IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 8 ~~~~ms~--~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
..+.|++ .+.+||+||+++|++ .|+++.+.+|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 16 ~~~~ms~~~~a~~RL~kEl~~l~~---~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~ 92 (179)
T 2z5d_A 16 PRGSMSSPSPGKRRMDTDVIKLIE---SKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNK 92 (179)
T ss_dssp -------CCHHHHHHHHHHHHHHH---SSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred ccccCCCchHHHHHHHHHHHhcCc---CCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecC
Confidence 4455665 478999999999985 47888775578999999999999999999999999999999999999999999
Q ss_pred cceecccCCCCeeeec
Q 033979 86 IFFLVLNSYSLAVWLP 101 (107)
Q Consensus 86 i~Hpnv~~~~g~v~~p 101 (107)
||||||+..+|.||+.
T Consensus 93 i~HPNV~~~~G~ICL~ 108 (179)
T 2z5d_A 93 IFHPNIDEASGTVCLD 108 (179)
T ss_dssp CCBTTBCTTTCBBCHH
T ss_pred CccCcCCCCCCeEecc
Confidence 9999999888999874
No 41
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=99.97 E-value=4.2e-32 Score=183.98 Aligned_cols=83 Identities=19% Similarity=0.386 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccCC
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSY 94 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 94 (107)
+.+||+||++++++. |+++.+ ++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+..
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~ 79 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA 79 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCc
Confidence 468999999999884 788888 8999999999999999999999999999999999999999999999999999987
Q ss_pred CCeeeec
Q 033979 95 SLAVWLP 101 (107)
Q Consensus 95 ~g~v~~p 101 (107)
+|.||+.
T Consensus 80 ~G~iCl~ 86 (152)
T 2onu_A 80 SGSVCLD 86 (152)
T ss_dssp TCBBCHH
T ss_pred CCeEecc
Confidence 8999874
No 42
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=99.97 E-value=1.3e-32 Score=195.60 Aligned_cols=87 Identities=22% Similarity=0.405 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-CC-CcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccC
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNS 93 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 93 (107)
+.+||++|+++|+++++.|+++.+ ++ +++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~ 82 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 82 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcC
Confidence 579999999999999999999998 55 5679999999999999999999999999999999999999999999999998
Q ss_pred CCCeeeecc
Q 033979 94 YSLAVWLPR 102 (107)
Q Consensus 94 ~~g~v~~p~ 102 (107)
.+|.||+.-
T Consensus 83 ~~G~ICL~i 91 (215)
T 1tte_A 83 VTGAICLDI 91 (215)
T ss_dssp SSSCCCSST
T ss_pred CCCEEECcc
Confidence 889998753
No 43
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=3.7e-31 Score=184.67 Aligned_cols=95 Identities=20% Similarity=0.334 Sum_probs=78.9
Q ss_pred CCCCCCCCcchhcHHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCe
Q 033979 1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQ 79 (107)
Q Consensus 1 ~~s~s~~~~~~ms~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~ 79 (107)
|+|+++. ..++.+.+||++|+++|++++++||.+.+ ++|+++|+++|.||++|||+||+|+++|.||++||++||+
T Consensus 3 mss~~~~---~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~ 79 (187)
T 2f4w_A 3 MSSTSSK---RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPS 79 (187)
T ss_dssp --------------CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCE
T ss_pred CCccCCC---CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCc
Confidence 6665543 34566899999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred EEEecCcceecccCCCCeeeec
Q 033979 80 VINYTIIFFLVLNSYSLAVWLP 101 (107)
Q Consensus 80 v~f~t~i~Hpnv~~~~g~v~~p 101 (107)
|+|.|+ |||++. +|.||+.
T Consensus 80 v~f~T~--~~~~~~-~G~ICL~ 98 (187)
T 2f4w_A 80 IYMITP--NGRFKC-NTRLCLS 98 (187)
T ss_dssp EEECSC--CSSBCT-TSCBC--
T ss_pred ccccCC--Cceecc-CCeEeee
Confidence 999999 899986 6888875
No 44
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=99.97 E-value=4e-31 Score=182.24 Aligned_cols=84 Identities=21% Similarity=0.359 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeeCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccCC
Q 033979 15 IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNSY 94 (107)
Q Consensus 15 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 94 (107)
.+.+||++|+++|++++. ++ ..++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+..
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v--~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~ 88 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV--YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDER 88 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE--EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTT
T ss_pred cHHHHHHHHHHHHHhCCC-CC--CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCccc
Confidence 467999999999999874 43 238899999999999999999999999999999999999999999999999999977
Q ss_pred CCeeeec
Q 033979 95 SLAVWLP 101 (107)
Q Consensus 95 ~g~v~~p 101 (107)
+|.||+.
T Consensus 89 ~G~iCl~ 95 (171)
T 1yf9_A 89 SGSVCLD 95 (171)
T ss_dssp TCBBCHH
T ss_pred CCeEecc
Confidence 8999874
No 45
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=6.4e-31 Score=179.48 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEe-e-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecc
Q 033979 14 KIASNRLQKELVEWQVNPPAGFKHK-V-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVL 91 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~~~~~~~~~-~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 91 (107)
+.+.+||+||+++| ++++|+++. + ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 81 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence 34789999999999 577899998 6 78999999988 9999999999999999999999999999999999999999
Q ss_pred cCCCCeeeecc
Q 033979 92 NSYSLAVWLPR 102 (107)
Q Consensus 92 ~~~~g~v~~p~ 102 (107)
+. +|.||+.-
T Consensus 82 ~~-~G~iCl~i 91 (160)
T 1y8x_A 82 DL-EGNVCLNI 91 (160)
T ss_dssp CT-TCBBCCGG
T ss_pred CC-CCeEEccc
Confidence 98 68998753
No 46
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=7.2e-31 Score=182.28 Aligned_cols=87 Identities=21% Similarity=0.306 Sum_probs=79.9
Q ss_pred hcHHHHHHHHHHHHHHhhCCCCCeEEe-e-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCccee
Q 033979 12 LSKIASNRLQKELVEWQVNPPAGFKHK-V-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFL 89 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~~~~~~~~~~-~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 89 (107)
.++.+.+||++|+++| ++++|+++. + ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus 23 ~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HP 99 (180)
T 2nvu_C 23 KASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHP 99 (180)
T ss_dssp SCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred CccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccC
Confidence 4456899999999999 577899998 6 88999999988 99999999999999999999999999999999999999
Q ss_pred cccCCCCeeeecc
Q 033979 90 VLNSYSLAVWLPR 102 (107)
Q Consensus 90 nv~~~~g~v~~p~ 102 (107)
||+. +|.||+.-
T Consensus 100 NV~~-~G~iCl~i 111 (180)
T 2nvu_C 100 NIDL-EGNVALNI 111 (180)
T ss_dssp TBCT-TSBBCCGG
T ss_pred CCCC-CCcEEccc
Confidence 9998 68998753
No 47
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=99.97 E-value=4.4e-31 Score=179.11 Aligned_cols=85 Identities=28% Similarity=0.459 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee--CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceecccC
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLNS 93 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 93 (107)
+.+||++|+++|+++++.|+.+.. ++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 81 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence 568999999999999999998665 679999999998 99999999999999999999999999999999999999997
Q ss_pred CCCeeeecc
Q 033979 94 YSLAVWLPR 102 (107)
Q Consensus 94 ~~g~v~~p~ 102 (107)
+|.||+.-
T Consensus 82 -~G~iCl~i 89 (154)
T 1c4z_D 82 -KGQVCLPV 89 (154)
T ss_dssp -TCBBCCTT
T ss_pred -CCEEECCC
Confidence 79998864
No 48
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.97 E-value=4.3e-30 Score=196.32 Aligned_cols=88 Identities=28% Similarity=0.488 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCcceeccc
Q 033979 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTIIFFLVLN 92 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 92 (107)
+.+.+||+||+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 46899999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeecc
Q 033979 93 SYSLAVWLPR 102 (107)
Q Consensus 93 ~~~g~v~~p~ 102 (107)
. +|.||+.-
T Consensus 82 ~-~G~iCl~i 90 (399)
T 4ddg_A 82 S-NGSISLDI 90 (399)
T ss_dssp T-TCBBCCGG
T ss_pred C-CCeEeCcc
Confidence 7 89998753
No 49
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.96 E-value=2e-30 Score=180.81 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=84.4
Q ss_pred CCcchhcHHHHHHHHHHHHHHhhCC---CCCeEEee-CCCcceEEEEEEcC-CCCCCCC-----------CEEEEEEECC
Q 033979 7 PSRKALSKIASNRLQKELVEWQVNP---PAGFKHKV-TDNLQRWIIEVNGA-PGTLYAN-----------ETFELQVDFP 70 (107)
Q Consensus 7 ~~~~~ms~~~~~RL~kEl~~l~~~~---~~~~~~~~-~~~~~~w~~~i~gp-~~tpy~g-----------g~f~~~i~fp 70 (107)
.+...|+..+.+||++|+++|++++ +.++++.+ ++|+++|+++|.|| ++|||+| |.|+++|.||
T Consensus 19 ~g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp 98 (186)
T 1zuo_A 19 SGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFK 98 (186)
T ss_dssp -----CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred CCcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECC
Confidence 4456788889999999999999997 68899998 89999999999997 8999998 8999999999
Q ss_pred CCCCCCCCeEEEecCccee-cccCCCCeeeecc
Q 033979 71 EHYPMEAPQVINYTIIFFL-VLNSYSLAVWLPR 102 (107)
Q Consensus 71 ~~YP~~pP~v~f~t~i~Hp-nv~~~~g~v~~p~ 102 (107)
++||++||+|+|.|++||| ||+. +|.||+.-
T Consensus 99 ~~YP~~PP~V~f~tpi~hPnnV~~-~G~ICL~i 130 (186)
T 1zuo_A 99 DNFPFDPPFVRVVLPVLSGGYVLG-GGALCMEL 130 (186)
T ss_dssp TTTTSSCCEEEEEESCEESTTBCG-GGBBCCGG
T ss_pred CCCCCCCCeEEEeCCccCCCccCC-CCcEEecc
Confidence 9999999999999999999 6996 89999864
No 50
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=99.96 E-value=1.4e-29 Score=177.07 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCeEEe----e-CCCcc---eEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033979 13 SKIASNRLQKELVEWQVNPPAGFKHK----V-TDNLQ---RWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYT 84 (107)
Q Consensus 13 s~~~~~RL~kEl~~l~~~~~~~~~~~----~-~~~~~---~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 84 (107)
++.+.+||+||+++|+ +++|+++. + ++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|
T Consensus 27 ~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 103 (190)
T 3o2u_A 27 LSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLK 103 (190)
T ss_dssp CCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECS
T ss_pred ccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEec
Confidence 3457999999999998 67899997 7 88999 9999997 78899999999999999999999999999999
Q ss_pred CcceecccCCCCeeeec
Q 033979 85 IIFFLVLNSYSLAVWLP 101 (107)
Q Consensus 85 ~i~Hpnv~~~~g~v~~p 101 (107)
+||||||+. +|.||+.
T Consensus 104 ~i~HPnV~~-~G~iCl~ 119 (190)
T 3o2u_A 104 KIFHPNIDL-KGNVCLN 119 (190)
T ss_dssp CCCCTTBCT-TSBBCCG
T ss_pred CcccCCCCC-CCeEech
Confidence 999999997 8999875
No 51
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.96 E-value=4.4e-29 Score=186.05 Aligned_cols=92 Identities=29% Similarity=0.345 Sum_probs=83.7
Q ss_pred chhcHHHHHHHHHHHHHHhhCCCCC----eEEee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033979 10 KALSKIASNRLQKELVEWQVNPPAG----FKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYT 84 (107)
Q Consensus 10 ~~ms~~~~~RL~kEl~~l~~~~~~~----~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 84 (107)
..||+.+.+||++|+++|++++++| +.+.+ ++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|
T Consensus 71 ~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T 150 (323)
T 3ceg_A 71 DANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 150 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEec
Confidence 4577889999999999999997775 45556 889999999999999999999999999999999999999999999
Q ss_pred C-----cceecccCCCCeeeecc
Q 033979 85 I-----IFFLVLNSYSLAVWLPR 102 (107)
Q Consensus 85 ~-----i~Hpnv~~~~g~v~~p~ 102 (107)
+ ||||||+. +|.||+.-
T Consensus 151 ~~g~~~ifHPNV~~-~G~ICLsi 172 (323)
T 3ceg_A 151 TGGHSVRFNPNLYN-DGKVCLSI 172 (323)
T ss_dssp STTTTCCCBTTBCT-TCBBCCGG
T ss_pred cCCCcccccCCCCc-CCeEechh
Confidence 8 99999996 89998853
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.90 E-value=9.7e-26 Score=153.79 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEE
Q 033979 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANE----------TFELQVDFPEHYPMEAPQVIN 82 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f 82 (107)
..-.+||++|+++|++ ++.+ ++|++.|.+++.||+||+|+|| .|.++|.||++||.+||+|+|
T Consensus 31 ~~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F 104 (172)
T 2z6o_A 31 ELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAV 104 (172)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred HHHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeee
Confidence 3348999999999999 3455 7899999999999999999999 999999999999999999999
Q ss_pred ecC-cceecccCCCCeeeec
Q 033979 83 YTI-IFFLVLNSYSLAVWLP 101 (107)
Q Consensus 83 ~t~-i~Hpnv~~~~g~v~~p 101 (107)
.+. +|||||+. +|.|||-
T Consensus 105 ~~~~~~hpnmY~-~G~ICLd 123 (172)
T 2z6o_A 105 PELDGKTAKMYR-GGKICLT 123 (172)
T ss_dssp GGGTTTCSSBCT-TSBBCCC
T ss_pred CCCCCCCCCCCC-CCcEech
Confidence 998 99999998 7999974
No 53
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.64 E-value=3.8e-17 Score=109.65 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEee-CCCcceEEEEEEcCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEE
Q 033979 14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANE----------TFELQVDFPEHYPMEAPQVIN 82 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f 82 (107)
..=..||..|+..|-+- +.. +++-..|...+.||+||+|+|+ .|.++|.||.+||.+||+|+|
T Consensus 33 ~~w~~RlkeEy~alI~y------v~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F 106 (168)
T 3kpa_A 33 DKWTARLKEEYASLITY------VEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL 106 (168)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred HHHHHHHHHHHHHHHHH------HHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeec
Confidence 34578999999998543 222 3445689999999999999999 999999999999999999999
Q ss_pred ecC-cceecccCCCCeeeec
Q 033979 83 YTI-IFFLVLNSYSLAVWLP 101 (107)
Q Consensus 83 ~t~-i~Hpnv~~~~g~v~~p 101 (107)
.+. .+|+|++. +|.+||-
T Consensus 107 p~ldgkt~kmYr-~GkICLd 125 (168)
T 3kpa_A 107 PELEGKTVKMYR-GGKICMT 125 (168)
T ss_dssp GGGTTTCSSEET-TTEECCC
T ss_pred ccccCcCccccC-CCcEEec
Confidence 995 89999997 8999983
No 54
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.46 E-value=1.5e-13 Score=93.61 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhC-CCCCeE--Eee-CCCcceEEEEEEcCCCCCCCCCE---EEEEEECCCCCCCCCCeEEEec------
Q 033979 18 NRLQKELVEWQVN-PPAGFK--HKV-TDNLQRWIIEVNGAPGTLYANET---FELQVDFPEHYPMEAPQVINYT------ 84 (107)
Q Consensus 18 ~RL~kEl~~l~~~-~~~~~~--~~~-~~~~~~w~~~i~gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t------ 84 (107)
+|..+|+.++.+. +..-.. +.. +|...++-+.+.|....+|+|+. |.+.|-||.+||++||.|.|.+
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 4456677666543 322222 223 67777788888888889999998 8899999999999999998865
Q ss_pred -C---cc-eecccCCCCeeeecc
Q 033979 85 -I---IF-FLVLNSYSLAVWLPR 102 (107)
Q Consensus 85 -~---i~-Hpnv~~~~g~v~~p~ 102 (107)
+ |+ |||||. .|.||+|-
T Consensus 111 ~~~~~I~~hpnVD~-~G~I~lpy 132 (162)
T 3r3q_A 111 TISSSLPIQEYIDS-NGWIALPI 132 (162)
T ss_dssp TSCTTSTHHHHBCT-TSBBCCGG
T ss_pred ccccccCCCCCCCC-CCcEeCcc
Confidence 1 77 999998 78899884
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.09 E-value=4e-10 Score=75.51 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=57.0
Q ss_pred HHHHHHHhhC-CCCCeEEee----CCCcceEEEEEEcCCCCCCCCCEEEE--EEECCCCCCCCCCeEEEecC------cc
Q 033979 21 QKELVEWQVN-PPAGFKHKV----TDNLQRWIIEVNGAPGTLYANETFEL--QVDFPEHYPMEAPQVINYTI------IF 87 (107)
Q Consensus 21 ~kEl~~l~~~-~~~~~~~~~----~~~~~~w~~~i~gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i~ 87 (107)
.+|+.++.+. +........ ..++..|.++|. .+|+|+.|.+ .|-||++||++||.| |.++ ..
T Consensus 26 ~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~ 100 (146)
T 3obq_A 26 VRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKT 100 (146)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECC
T ss_pred HHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECC
Confidence 4466665444 322222222 468899999996 5799999995 888999999999999 7776 58
Q ss_pred eecccCCCCeeeecc
Q 033979 88 FLVLNSYSLAVWLPR 102 (107)
Q Consensus 88 Hpnv~~~~g~v~~p~ 102 (107)
|+|||. .|.||+|-
T Consensus 101 ~~~Vd~-~G~i~lpy 114 (146)
T 3obq_A 101 GKHVDA-NGKIYLPY 114 (146)
T ss_dssp BTTBCT-TCBBCCHH
T ss_pred CCCCCC-CCCEeccc
Confidence 999999 78888873
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.86 E-value=0.0064 Score=38.70 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeeCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYT 84 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 84 (107)
...+...|+..|+..-+..+.+. .+....+.+.+..-.+..-+.-.+.+.+.||.+||.+||.+.+..
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~~-~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTVL-SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEC-CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEEc-cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 35567789998887644444433 222345555554222222233478899999999999999998866
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.08 Score=33.92 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeeC-------CCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKVT-------DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~~-------~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
...+...|+..|+..-...+..... +....+.+.+....+ .-..-.+.+.+.+|.+||..+|.|.+...
T Consensus 11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 11 YYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp HHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred hHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 4556788999888764433332211 124566777763222 11234788999999999999999998764
No 58
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.29 E-value=0.046 Score=34.62 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhCCCCCeEEee-CC--CcceEEEEEEcCCCCCC--CCCEEEEEEECCCCCCCCCCeEEEecC
Q 033979 19 RLQKELVEWQVNPPAGFKHKV-TD--NLQRWIIEVNGAPGTLY--ANETFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 19 RL~kEl~~l~~~~~~~~~~~~-~~--~~~~w~~~i~gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
+...|+..|+..-..-+.+.. .. ....+.+.+..+.+..- ..-.+.+.+.||.+||..+|.|...+.
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 477899888876545555443 21 23344455542222111 124788999999999999999988764
No 59
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=95.86 E-value=0.069 Score=35.21 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHHHhhCCC--CCeEEee-C-------------CC-c--ceEEEEEEcCCCCCCCCCEEEEEEECCCCC
Q 033979 13 SKIASNRLQKELVEWQVNPP--AGFKHKV-T-------------DN-L--QRWIIEVNGAPGTLYANETFELQVDFPEHY 73 (107)
Q Consensus 13 s~~~~~RL~kEl~~l~~~~~--~~~~~~~-~-------------~~-~--~~w~~~i~gp~~tpy~gg~f~~~i~fp~~Y 73 (107)
......+...|+..|...-+ .-+.+.. . .+ . ....+.+.-. + + ...+.+.|.+|.+|
T Consensus 12 ~~~~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~-~-~--~~~i~L~v~lP~~Y 87 (154)
T 2daw_A 12 VKESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIE-E-P--KVKIDLQVTMPHSY 87 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEET-T-T--TEEEEEEEEECSST
T ss_pred hhhhHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecC-C-C--CceEEEEEEcCCCC
Confidence 34456667788888887643 4454431 0 01 1 2444444321 1 1 23799999999999
Q ss_pred CCCCCeEEEecC
Q 033979 74 PMEAPQVINYTI 85 (107)
Q Consensus 74 P~~pP~v~f~t~ 85 (107)
|..+|.|...+.
T Consensus 88 P~~~P~i~l~~~ 99 (154)
T 2daw_A 88 PYLALQLFGRSS 99 (154)
T ss_dssp TSSCCEEEEECS
T ss_pred CCCCCcEEEEeC
Confidence 999999987775
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=95.81 E-value=0.099 Score=33.35 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEee-CC-----CcceEEEEEEcCCC-C-CCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033979 16 ASNRLQKELVEWQVNPPAGFKHKV-TD-----NLQRWIIEVNGAPG-T-LYANETFELQVDFPEHYPMEAPQVINYT 84 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~~~~~-~~-----~~~~w~~~i~gp~~-t-py~gg~f~~~i~fp~~YP~~pP~v~f~t 84 (107)
...+...|+..|+..-...+.... .. ......+.+. +.+ + .-..-.+.|.|.||.+||..+|.|.+..
T Consensus 11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 11 YSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp HHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred hHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 455678899888766444444332 11 1234555554 221 1 0012468899999999999999998743
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.10 E-value=0.11 Score=32.87 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=39.6
Q ss_pred HHHHHHHHhhCCCC--CeEEee--CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 033979 20 LQKELVEWQVNPPA--GFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYT 84 (107)
Q Consensus 20 L~kEl~~l~~~~~~--~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 84 (107)
...|+..|+..-.. -+.+.. ..+...+.+.+...... =..-.+.+.+.+|.+||..+|.+...+
T Consensus 12 q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 12 VQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 56788887765221 333322 12245677777632210 012478999999999999999987664
No 62
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=91.04 E-value=0.15 Score=33.28 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.5
Q ss_pred EEEEEEECCCCCCCCCCeEEEecC
Q 033979 62 TFELQVDFPEHYPMEAPQVINYTI 85 (107)
Q Consensus 62 ~f~~~i~fp~~YP~~pP~v~f~t~ 85 (107)
.+.+.+.+|.+||..||.+.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 688999999999999999988764
No 63
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=90.95 E-value=0.69 Score=31.68 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhCCCCCeE-Eee-CCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCc
Q 033979 18 NRLQKELVEWQVNPPAGFK-HKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVINYTII 86 (107)
Q Consensus 18 ~RL~kEl~~l~~~~~~~~~-~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 86 (107)
++|.+|+.++ |.. +.. ++++....+.+..- .|....+++.++.+||.++|.+...-++
T Consensus 4 ~~li~Ei~~i------GW~~l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~ 63 (186)
T 3zqs_A 4 SSLIEEIGTL------GWDKLVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV 63 (186)
T ss_dssp CSHHHHHHHH------CGGGEEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS
T ss_pred HHHHHHHHHh------CCceeeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC
Confidence 3588899888 433 223 66777778877632 3789999999999999999988776664
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=64.70 E-value=6.4 Score=17.76 Aligned_cols=20 Identities=45% Similarity=0.594 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhCCCCCe
Q 033979 16 ASNRLQKELVEWQVNPPAGF 35 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~~~~~~ 35 (107)
.+.||.-|+...+.+|+.|.
T Consensus 6 eldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 6 ELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHhhhccCCCCCC
Confidence 47899999999999988764
No 65
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=43.74 E-value=22 Score=15.92 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHh
Q 033979 15 IASNRLQKELVEWQ 28 (107)
Q Consensus 15 ~~~~RL~kEl~~l~ 28 (107)
..++.|++|+++-+
T Consensus 8 nlqkkirkelkqrq 21 (26)
T 1m46_B 8 NLQKKIRKELKQRQ 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45788999988643
No 66
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=42.75 E-value=13 Score=22.17 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 033979 15 IASNRLQKELVEW 27 (107)
Q Consensus 15 ~~~~RL~kEl~~l 27 (107)
..+||+++||+-|
T Consensus 62 sQLKRvQRdlrGL 74 (87)
T 2rf4_B 62 SQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCC
Confidence 3689999999876
No 67
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=40.58 E-value=30 Score=23.74 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=21.9
Q ss_pred CCEEEEEEECCCCCCC-----CCCeEEEec
Q 033979 60 NETFELQVDFPEHYPM-----EAPQVINYT 84 (107)
Q Consensus 60 gg~f~~~i~fp~~YP~-----~pP~v~f~t 84 (107)
.|.|.|+-.+|--||. .||.|+|.-
T Consensus 110 ~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 110 TGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 6899999999999998 788888764
No 68
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=30.45 E-value=42 Score=17.01 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhh
Q 033979 16 ASNRLQKELVEWQV 29 (107)
Q Consensus 16 ~~~RL~kEl~~l~~ 29 (107)
..+||..|++.+.+
T Consensus 29 ~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 29 KIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 57999999998753
No 69
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=28.94 E-value=72 Score=19.09 Aligned_cols=27 Identities=15% Similarity=0.280 Sum_probs=21.1
Q ss_pred CCEEEEEEECCCCCCCCCCeEEEecCcc
Q 033979 60 NETFELQVDFPEHYPMEAPQVINYTIIF 87 (107)
Q Consensus 60 gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 87 (107)
+..+...+.|+..|. .+|+|.+--..+
T Consensus 28 ~R~~~~~V~F~~~F~-~~P~V~v~l~~l 54 (101)
T 2ccv_A 28 TRELAKNITFASPYC-RPPVVLLSITQL 54 (101)
T ss_dssp CEEEEEEEECSSCCS-SCCEEEEEEEEE
T ss_pred ceEEEEEeEeCcccC-CCCEEEEEeEEE
Confidence 347888899999999 599998765433
No 70
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=27.01 E-value=45 Score=18.13 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=13.6
Q ss_pred EEEEEcCCCCCCCCCEEEEEEECCCCCCC
Q 033979 47 IIEVNGAPGTLYANETFELQVDFPEHYPM 75 (107)
Q Consensus 47 ~~~i~gp~~tpy~gg~f~~~i~fp~~YP~ 75 (107)
.+++.-|++ |-.| +-.+|+|||.
T Consensus 34 IgLFk~P~t----Gk~f--R~k~pddy~~ 56 (56)
T 3kxt_A 34 IGLFKDPET----GKYF--RHKLPDDYPI 56 (56)
T ss_dssp EEEEECTTT----CCEE--EEECCTTCCC
T ss_pred EEEEECCCC----CcEe--eeeCcCcCCC
Confidence 344554433 4444 5678999984
No 71
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=24.07 E-value=49 Score=23.22 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.6
Q ss_pred CCEEEEEEECCCCCC-------CCCCeEEEec
Q 033979 60 NETFELQVDFPEHYP-------MEAPQVINYT 84 (107)
Q Consensus 60 gg~f~~~i~fp~~YP-------~~pP~v~f~t 84 (107)
.|.|.|+-.+|--|| ..||.|+|.-
T Consensus 135 ~G~y~F~TI~Pg~Yp~~~~~~~~RpaHIH~~V 166 (241)
T 2bum_B 135 NGYYVFRTIKPGPYPWRNRINEWRPAHIHFSL 166 (241)
T ss_dssp TSEEEEEEECCCCEEESSSTTEEECSEEEEEE
T ss_pred CceEEEEEecCCccccCCCCCCCcCceEEEEE
Confidence 499999999999998 4799988864
No 72
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=23.65 E-value=59 Score=20.23 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 033979 14 KIASNRLQKELVEWQV 29 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~ 29 (107)
+.+.+||.||.....+
T Consensus 14 tg~vkRL~KE~~~Y~k 29 (116)
T 3mxz_A 14 TSTCKRIVKELHSYEK 29 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678999999887654
No 73
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=23.17 E-value=62 Score=19.76 Aligned_cols=18 Identities=33% Similarity=0.228 Sum_probs=13.7
Q ss_pred hcHHHHHHHHHHHHHHhh
Q 033979 12 LSKIASNRLQKELVEWQV 29 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~~ 29 (107)
..+.+.+||.||.....+
T Consensus 8 Iktg~vkRL~KE~~~Y~k 25 (106)
T 1qsd_A 8 IKVKALKRLTKEEGYYQQ 25 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346789999999887654
No 74
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=22.82 E-value=54 Score=23.01 Aligned_cols=25 Identities=8% Similarity=0.112 Sum_probs=21.9
Q ss_pred CCEEEEEEECCCCCCC-------CCCeEEEec
Q 033979 60 NETFELQVDFPEHYPM-------EAPQVINYT 84 (107)
Q Consensus 60 gg~f~~~i~fp~~YP~-------~pP~v~f~t 84 (107)
.|.|.|+=.+|--||. .||.|+|.-
T Consensus 134 ~G~y~F~TI~Pg~Yp~p~~~~~~Rp~HIHf~V 165 (238)
T 3t63_M 134 DGYYSFRTIKPGPAPWRNGPNDWRPAHIYFGI 165 (238)
T ss_dssp TSEEEEEEECCCCEEESSSTTEEECSEEEEEE
T ss_pred CceEEEEEECCcCccCCCCCCCCcCCeEEEEE
Confidence 4999999999999986 789998873
No 75
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=22.11 E-value=62 Score=17.17 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhC
Q 033979 16 ASNRLQKELVEWQVN 30 (107)
Q Consensus 16 ~~~RL~kEl~~l~~~ 30 (107)
-+.||.+|+..|++.
T Consensus 7 EILRLErEIE~Lqrq 21 (51)
T 2lw9_A 7 EILRLEKEIEDLQRM 21 (51)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468999999998865
No 76
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=22.08 E-value=75 Score=15.89 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=12.6
Q ss_pred hcHHHHHHHHHHHHHHh
Q 033979 12 LSKIASNRLQKELVEWQ 28 (107)
Q Consensus 12 ms~~~~~RL~kEl~~l~ 28 (107)
+|..-.+||.+|-++-+
T Consensus 4 ls~~ekaRlrRERR~aK 20 (38)
T 3zs9_C 4 LTEAEKRRLLRERRQKK 20 (38)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 45667889999988754
No 77
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=21.97 E-value=57 Score=23.85 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.0
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 033979 60 NETFELQVDFPEHYP------------------MEAPQVINYT 84 (107)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (107)
.|.|.|+-.+|--|| ..||.|+|.-
T Consensus 188 ~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~~grh~~RpaHIH~~V 230 (312)
T 2xsu_A 188 NGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYFV 230 (312)
T ss_dssp TSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEEE
T ss_pred CceEEEEEECcCcccCCCCCcHHHHHHHhhccCCCCceEEEEE
Confidence 589999999999998 5688888763
No 78
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=21.94 E-value=68 Score=19.61 Aligned_cols=16 Identities=31% Similarity=0.258 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 033979 14 KIASNRLQKELVEWQV 29 (107)
Q Consensus 14 ~~~~~RL~kEl~~l~~ 29 (107)
+.+.+||.||.....+
T Consensus 13 t~~vkRL~KE~~~Y~k 28 (108)
T 1h7c_A 13 TGVVRRLVKERVMYEK 28 (108)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5689999999887654
No 79
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=21.73 E-value=62 Score=21.99 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=20.4
Q ss_pred CEEEEEEECCCCCCCC-----CCeEEEe
Q 033979 61 ETFELQVDFPEHYPME-----APQVINY 83 (107)
Q Consensus 61 g~f~~~i~fp~~YP~~-----pP~v~f~ 83 (107)
|.|.|+=.+|--||.. ||.|+|.
T Consensus 102 G~~~F~TI~Pg~Y~~~~g~~rp~HIH~~ 129 (200)
T 3t63_A 102 GEWTLHTVKPGVVNNAAGVPMAPHINIS 129 (200)
T ss_dssp CSEEEEEECCCCEECTTSCEECSCEEEE
T ss_pred CEEEEEEECCcCcCCCCCCccCCEEEEE
Confidence 8999999999999986 7888776
No 80
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.62 E-value=55 Score=14.73 Aligned_cols=11 Identities=45% Similarity=0.437 Sum_probs=7.2
Q ss_pred HHHHHHHHHhh
Q 033979 19 RLQKELVEWQV 29 (107)
Q Consensus 19 RL~kEl~~l~~ 29 (107)
.|.||+++++.
T Consensus 5 elykeledlqe 15 (27)
T 3twe_A 5 ELYKELEDLQE 15 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46677777664
No 81
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=20.72 E-value=62 Score=23.62 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=20.9
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEe
Q 033979 60 NETFELQVDFPEHYP------------------MEAPQVINY 83 (107)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 83 (107)
.|.|.|+-.+|--|| ..||.|+|.
T Consensus 184 ~G~y~F~TI~Pg~Y~~p~dGp~g~lL~~~grh~~RpaHIHf~ 225 (311)
T 2azq_A 184 EGRYRARSIVPSGYGCDPQGPTQECLDLLGRHGQRPAHVHFF 225 (311)
T ss_dssp TCEEEEEEECCCCEECCTTSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CceEEEEEEcCCCcCCCCCCcHHHHHHhhhccCCCCceEEEE
Confidence 499999999999998 458999886
No 82
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=20.71 E-value=63 Score=23.39 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCEEEEEEECCCCCC------------------CCCCeEEEec
Q 033979 60 NETFELQVDFPEHYP------------------MEAPQVINYT 84 (107)
Q Consensus 60 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 84 (107)
.|.|.|+=.+|--|| ..||.|+|.-
T Consensus 184 ~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~V 226 (293)
T 1tmx_A 184 DGGYAFWAITPTPYPIPHDGPVGRMLAATGRSPMRASHLHFMV 226 (293)
T ss_dssp TSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECCEEEEEE
T ss_pred CceEEEEEECCCcccCCCCCchHHHHHhcccCCCCCceEEEEE
Confidence 589999999999998 4588888763
Done!