BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033982
         (107 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B4S6K6|NADA_PROA2 Quinolinate synthase A OS=Prosthecochloris aestuarii (strain DSM
           271 / SK 413) GN=nadA PE=3 SV=1
          Length = 322

 Score = 32.3 bits (72), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 11  HYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPF----GYARLYSSALTTQGFVN 66
           H +  W  D ++ ++ +FP    +A P  + E +  A F    G    YS       F+ 
Sbjct: 188 HESYSW--DVIETAVRQFPDAQLIAHPECRREVLDHADFVGSTGALLAYSQKSPADAFIV 245

Query: 67  CAEE------KQRKLTLAFLQKVKDILSSQGVKAEM 96
             E       K+R    +F+   KDI+SSQ V ++M
Sbjct: 246 ATEPGILYEMKKRSPEKSFIAAPKDIVSSQSVCSQM 281


>sp|P94494|ALR2_BACSU Alanine racemase 2 OS=Bacillus subtilis (strain 168) GN=alr2 PE=3
           SV=1
          Length = 394

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)

Query: 33  FMAQPPTKSEFVFTAPFGYARLYSSALTTQGFV 65
           ++A+P   +E + T P GYA  YS AL+ +GFV
Sbjct: 276 YIAEP---NEVIATLPIGYADGYSRALSNRGFV 305


>sp|Q5DTK1|CHSS3_MOUSE Chondroitin sulfate synthase 3 OS=Mus musculus GN=Chsy3 PE=1 SV=3
          Length = 884

 Score = 30.8 bits (68), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 29  PLIIFMAQPPTKSEFVFTAPFGYARLYSSALT 60
           P +  M  PPT+ +FVF+   G+ R Y   +T
Sbjct: 754 PKVTHMRNPPTEGDFVFSKETGFWRDYGYGIT 785


>sp|Q8B115|GLYC_CPXVB Pre-glycoprotein polyprotein GP complex OS=Cupixi virus (isolate
           Rat/Brasil/BeAn 119303/1970) GN=GPC PE=3 SV=1
          Length = 480

 Score = 30.0 bits (66), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 7   SEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVF 45
           SE+ ++ L WVL  L+   S+ P+I    +  T +EF F
Sbjct: 133 SEEYNWVLDWVLRGLQHDFSRDPVICCEPKKKTNAEFQF 171


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.132    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,619,063
Number of Sequences: 539616
Number of extensions: 1142352
Number of successful extensions: 3456
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3453
Number of HSP's gapped (non-prelim): 7
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)