Query 033982
Match_columns 107
No_of_seqs 172 out of 1029
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.6 1.7E-15 5.9E-20 91.8 7.3 90 1-107 9-99 (146)
2 3idf_A USP-like protein; unive 99.6 3.8E-15 1.3E-19 89.5 7.2 89 1-107 5-95 (138)
3 3fg9_A Protein of universal st 99.5 2.3E-14 8E-19 87.8 7.2 88 1-107 19-110 (156)
4 3hgm_A Universal stress protei 99.5 1E-15 3.5E-20 92.8 0.8 94 1-107 6-102 (147)
5 1mjh_A Protein (ATP-binding do 99.5 2.5E-14 8.5E-19 88.1 6.4 98 1-107 9-112 (162)
6 2dum_A Hypothetical protein PH 99.4 1E-13 3.5E-18 86.0 4.4 98 1-107 9-109 (170)
7 1tq8_A Hypothetical protein RV 99.4 8.7E-14 3E-18 86.3 3.3 88 1-107 21-111 (163)
8 3dlo_A Universal stress protei 99.4 9.1E-13 3.1E-17 81.1 7.2 79 1-107 28-109 (155)
9 3fdx_A Putative filament prote 99.4 3.4E-13 1.2E-17 81.3 4.2 89 1-107 5-98 (143)
10 3ab8_A Putative uncharacterize 99.4 3E-13 1E-17 89.2 3.8 100 1-107 4-103 (268)
11 2z08_A Universal stress protei 99.4 3.7E-13 1.3E-17 80.8 3.8 85 1-107 6-91 (137)
12 2gm3_A Unknown protein; AT3G01 99.4 1.1E-12 3.7E-17 81.8 5.7 98 1-107 9-116 (175)
13 3olq_A Universal stress protei 99.3 1.9E-12 6.5E-17 87.2 6.9 91 1-106 11-102 (319)
14 3tnj_A Universal stress protei 99.3 5.2E-13 1.8E-17 81.1 2.4 91 1-107 10-101 (150)
15 3cis_A Uncharacterized protein 99.3 3.1E-12 1.1E-16 86.1 6.5 89 1-107 23-116 (309)
16 3loq_A Universal stress protei 99.3 3.5E-13 1.2E-17 90.1 1.1 90 1-107 26-117 (294)
17 1q77_A Hypothetical protein AQ 99.3 4E-12 1.4E-16 76.2 4.4 91 1-107 8-101 (138)
18 1jmv_A USPA, universal stress 99.2 5E-12 1.7E-16 76.0 2.9 88 1-107 6-94 (141)
19 3cis_A Uncharacterized protein 99.0 3.9E-10 1.3E-14 75.8 5.9 85 1-107 175-261 (309)
20 3mt0_A Uncharacterized protein 98.9 8.8E-10 3E-14 73.5 5.0 84 1-107 138-229 (290)
21 3ab8_A Putative uncharacterize 98.9 3.1E-09 1.1E-13 69.9 5.8 71 1-107 158-228 (268)
22 3mt0_A Uncharacterized protein 98.9 2.2E-09 7.5E-14 71.6 4.4 35 1-37 11-45 (290)
23 3olq_A Universal stress protei 98.8 8.4E-09 2.9E-13 69.3 6.2 89 1-107 160-258 (319)
24 3loq_A Universal stress protei 98.8 6E-09 2.1E-13 69.5 5.3 70 1-107 174-243 (294)
25 4aoy_A Isocitrate dehydrogenas 66.6 26 0.00088 24.6 6.7 26 8-35 185-210 (402)
26 1k77_A EC1530, hypothetical pr 63.4 25 0.00084 22.0 6.7 24 9-34 82-105 (260)
27 3umv_A Deoxyribodipyrimidine p 62.8 40 0.0014 24.3 8.3 28 10-39 52-79 (506)
28 3u0h_A Xylose isomerase domain 61.9 27 0.00093 22.0 6.5 57 12-96 84-140 (281)
29 3ngf_A AP endonuclease, family 61.4 28 0.00097 22.1 6.5 24 9-34 90-113 (269)
30 3qxb_A Putative xylose isomera 60.9 20 0.00069 23.4 5.2 23 10-34 112-134 (316)
31 3a2k_A TRNA(Ile)-lysidine synt 58.0 38 0.0013 23.9 6.4 35 1-37 22-56 (464)
32 2qfy_A Isocitrate dehydrogenas 57.4 42 0.0014 23.7 6.5 27 8-36 203-229 (427)
33 2uxq_A Isocitrate dehydrogenas 55.9 47 0.0016 23.3 6.5 27 8-36 184-210 (402)
34 1ni5_A Putative cell cycle pro 55.4 50 0.0017 23.1 7.2 35 1-37 17-52 (433)
35 3us8_A Isocitrate dehydrogenas 53.6 57 0.0019 23.1 6.7 26 8-35 208-233 (427)
36 3cqj_A L-ribulose-5-phosphate 53.4 42 0.0014 21.5 7.0 23 10-34 106-128 (295)
37 1lwd_A Isocitrate dehydrogenas 53.4 56 0.0019 23.0 6.7 27 8-36 187-213 (413)
38 3ayv_A Putative uncharacterize 51.9 41 0.0014 21.0 7.0 24 10-35 74-97 (254)
39 3tva_A Xylose isomerase domain 50.7 46 0.0016 21.2 6.2 25 9-35 99-123 (290)
40 1use_A VAsp, vasodilator-stimu 50.4 20 0.00069 17.0 4.5 29 64-92 16-44 (45)
41 2zds_A Putative DNA-binding pr 50.3 50 0.0017 21.5 6.4 24 10-35 109-132 (340)
42 3qc0_A Sugar isomerase; TIM ba 49.3 46 0.0016 20.9 7.1 24 10-35 81-104 (275)
43 2xry_A Deoxyribodipyrimidine p 47.5 55 0.0019 23.2 5.9 27 11-39 52-78 (482)
44 3dx5_A Uncharacterized protein 45.5 56 0.0019 20.7 7.3 24 9-34 81-104 (286)
45 3udu_A 3-isopropylmalate dehyd 45.0 17 0.00058 25.2 2.8 26 8-35 167-192 (361)
46 2dbs_A Hypothetical protein TT 44.0 9.7 0.00033 20.3 1.2 20 1-20 34-55 (90)
47 3vmk_A 3-isopropylmalate dehyd 43.3 20 0.00067 25.0 3.0 26 8-35 179-204 (375)
48 1zor_A Isocitrate dehydrogenas 42.8 19 0.00066 25.2 2.9 27 8-36 183-209 (399)
49 1cnz_A IPMDH, IMDH, protein (3 42.7 20 0.0007 24.8 3.0 26 8-35 170-195 (363)
50 1w0d_A 3-isopropylmalate dehyd 42.4 20 0.00068 24.5 2.8 26 8-35 154-179 (337)
51 3u1h_A 3-isopropylmalate dehyd 42.0 21 0.00072 25.0 3.0 26 8-35 186-211 (390)
52 3kws_A Putative sugar isomeras 41.7 66 0.0023 20.5 7.2 25 9-35 101-125 (287)
53 1wpw_A 3-isopropylmalate dehyd 40.7 23 0.00079 24.2 3.0 27 8-36 144-170 (336)
54 1vlc_A 3-isopropylmalate dehyd 40.2 24 0.00081 24.5 3.0 26 8-35 174-199 (366)
55 1a05_A IPMDH, IMDH, 3-isopropy 39.5 24 0.00084 24.3 3.0 26 8-35 165-190 (358)
56 2zqe_A MUTS2 protein; alpha/be 39.5 26 0.0009 18.6 2.6 27 8-35 15-41 (83)
57 1x92_A APC5045, phosphoheptose 39.4 29 0.001 21.0 3.1 33 1-36 117-149 (199)
58 2y3z_A 3-isopropylmalate dehyd 38.9 25 0.00087 24.3 3.0 26 8-35 163-188 (359)
59 2iel_A Hypothetical protein TT 38.7 46 0.0016 19.8 3.7 33 72-104 52-85 (138)
60 1wy5_A TILS, hypothetical UPF0 38.4 85 0.0029 20.8 6.8 35 1-37 28-63 (317)
61 1i60_A IOLI protein; beta barr 38.2 72 0.0025 19.9 8.2 23 10-34 82-104 (278)
62 1x0l_A Homoisocitrate dehydrog 37.3 29 0.00099 23.7 3.0 28 8-36 144-171 (333)
63 3flk_A Tartrate dehydrogenase/ 37.2 27 0.00092 24.2 2.9 27 8-35 166-192 (364)
64 3r8w_A 3-isopropylmalate dehyd 36.1 30 0.001 24.4 3.0 26 8-35 207-232 (405)
65 3blx_A Isocitrate dehydrogenas 35.9 32 0.0011 23.7 3.1 28 8-36 157-184 (349)
66 1tif_A IF3-N, translation init 35.7 10 0.00035 20.3 0.5 34 1-38 18-51 (78)
67 3blx_B Isocitrate dehydrogenas 34.1 32 0.0011 23.7 2.9 28 8-36 163-190 (354)
68 3dms_A Isocitrate dehydrogenas 33.1 36 0.0012 24.1 3.0 28 8-36 214-241 (427)
69 3l23_A Sugar phosphate isomera 33.0 1E+02 0.0034 20.0 7.7 25 8-34 104-128 (303)
70 1m3s_A Hypothetical protein YC 32.3 45 0.0015 19.8 3.1 33 1-36 83-115 (186)
71 3ty4_A Probable homoisocitrate 31.4 36 0.0012 23.6 2.8 27 8-35 162-200 (366)
72 3mf2_A BLL0957 protein; aminoa 31.4 1E+02 0.0036 21.2 5.0 31 73-104 207-237 (346)
73 2d4v_A Isocitrate dehydrogenas 31.3 40 0.0014 23.9 3.0 29 8-37 204-232 (429)
74 2e0c_A 409AA long hypothetical 30.6 43 0.0015 23.6 3.1 29 8-37 197-225 (409)
75 2yva_A DNAA initiator-associat 30.6 50 0.0017 19.8 3.1 33 1-36 113-145 (196)
76 2iv0_A Isocitrate dehydrogenas 30.5 42 0.0014 23.6 3.0 28 8-36 197-224 (412)
77 3obe_A Sugar phosphate isomera 29.9 1.2E+02 0.004 19.8 6.8 24 9-34 111-134 (305)
78 2y1q_A CLPC N-domain, negative 29.6 9.8 0.00033 22.1 -0.3 30 6-36 6-35 (150)
79 1tyo_A Isocitrate dehydrogenas 29.4 43 0.0015 23.8 2.9 28 9-37 208-235 (435)
80 1hqs_A Isocitrate dehydrogenas 29.2 42 0.0014 23.7 2.9 27 9-36 196-222 (423)
81 1o97_C Electron transferring f 29.2 54 0.0018 21.4 3.2 29 7-37 36-66 (264)
82 1k6k_A ATP-dependent CLP prote 28.2 8.7 0.0003 22.2 -0.7 30 6-36 2-31 (143)
83 3u7i_A FMN-dependent NADH-azor 27.9 74 0.0025 20.0 3.7 37 1-37 7-51 (223)
84 2auh_B Growth factor receptor- 27.7 21 0.00071 17.9 0.8 6 2-7 17-22 (59)
85 3fes_A ATP-dependent CLP endop 27.4 11 0.00039 21.9 -0.3 29 6-35 8-36 (145)
86 3p0r_A Azoreductase; structura 26.6 72 0.0025 19.7 3.4 37 1-37 7-49 (211)
87 1a0c_A Xylose isomerase; ketol 26.6 1.7E+02 0.0058 20.6 6.6 24 9-34 164-187 (438)
88 1khy_A CLPB protein; alpha hel 25.5 12 0.0004 21.7 -0.5 29 6-35 6-34 (148)
89 1vd2_A Protein kinase C, IOTA 25.0 90 0.0031 16.9 3.2 27 9-37 62-88 (89)
90 3aam_A Endonuclease IV, endoiv 24.7 50 0.0017 20.8 2.5 24 9-34 85-108 (270)
91 2i2w_A Phosphoheptose isomeras 24.4 68 0.0023 19.7 3.0 33 1-36 135-167 (212)
92 3k6r_A Putative transferase PH 24.4 82 0.0028 20.7 3.5 30 2-34 152-181 (278)
93 3fh2_A Probable ATP-dependent 24.3 12 0.00043 21.7 -0.5 29 6-35 7-35 (146)
94 2ki0_A DS119; beta-alpha-beta, 24.3 48 0.0016 14.3 1.5 7 88-94 25-31 (36)
95 2d1c_A Isocitrate dehydrogenas 24.3 60 0.0021 23.5 2.9 28 8-36 165-192 (496)
96 3cvj_A Putative phosphoheptose 24.0 70 0.0024 20.1 3.0 33 1-36 112-144 (243)
97 2lqo_A Putative glutaredoxin R 23.9 48 0.0017 17.7 2.0 6 90-95 27-32 (92)
98 2hw2_A Rifampin ADP-ribosyl tr 22.7 88 0.003 18.6 2.9 24 10-34 53-76 (143)
99 3aal_A Probable endonuclease 4 22.6 57 0.002 21.0 2.5 25 9-35 91-115 (303)
100 2fzv_A Putative arsenical resi 22.4 69 0.0024 21.1 2.8 35 1-37 61-99 (279)
101 1tk9_A Phosphoheptose isomeras 22.2 89 0.003 18.4 3.1 34 1-37 114-147 (188)
102 1jeo_A MJ1247, hypothetical pr 22.0 94 0.0032 18.2 3.2 33 1-36 86-118 (180)
103 1efp_B ETF, protein (electron 21.9 92 0.0031 20.1 3.3 28 7-37 36-65 (252)
104 2xbl_A Phosphoheptose isomeras 21.8 90 0.0031 18.6 3.1 33 1-36 120-152 (198)
105 2xhz_A KDSD, YRBH, arabinose 5 21.6 1E+02 0.0036 18.0 3.4 33 1-36 100-132 (183)
106 2q62_A ARSH; alpha/beta, flavo 21.1 77 0.0026 20.3 2.8 35 1-37 37-75 (247)
107 1efv_B Electron transfer flavo 20.9 99 0.0034 20.0 3.3 28 7-37 39-68 (255)
108 3zri_A CLPB protein, CLPV; cha 20.6 45 0.0015 20.2 1.5 30 6-36 25-54 (171)
109 2nly_A BH1492 protein, diverge 20.6 1.1E+02 0.0038 19.8 3.4 26 11-38 171-196 (245)
110 4gek_A TRNA (CMO5U34)-methyltr 20.4 1.1E+02 0.0038 19.5 3.4 31 2-35 100-130 (261)
111 3ih5_A Electron transfer flavo 20.2 1.1E+02 0.0036 19.3 3.2 30 7-38 18-47 (217)
112 4hc4_A Protein arginine N-meth 20.1 83 0.0028 21.7 2.9 31 1-35 109-139 (376)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.61 E-value=1.7e-15 Score=91.77 Aligned_cols=90 Identities=8% Similarity=0.070 Sum_probs=70.2
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFL 80 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (107)
|||+|+|+.|.+|++||+.+|++.+ ++|+++||+++..... ... ........+..++..++.+
T Consensus 9 Lv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~-----~~~----------~~~~~~~~~~~~~~~~~~l 71 (146)
T 3s3t_A 9 LVPVDSSDAAQAAFTEAVNIAQRHQ--ANLTALYVVDDSAYHT-----PAL----------DPVLSELLDAEAAHAKDAM 71 (146)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEEECCCCCC-----GGG----------HHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccc-----ccc----------ccccHHHHHHHHHHHHHHH
Confidence 6999999999999999999999876 9999999997654332 110 0022334455677788899
Q ss_pred HHHHHHHHhcCC-cEEEEEeecCCCCCC
Q 033982 81 QKVKDILSSQGV-KAEMIVEVWDPTMAI 107 (107)
Q Consensus 81 ~~~~~~~~~~~v-~~~~~v~~Gdp~~~I 107 (107)
+++.+.+...|+ +++..+..|+|.+.|
T Consensus 72 ~~~~~~~~~~g~~~~~~~~~~g~~~~~I 99 (146)
T 3s3t_A 72 RQRQQFVATTSAPNLKTEISYGIPKHTI 99 (146)
T ss_dssp HHHHHHHTTSSCCCCEEEEEEECHHHHH
T ss_pred HHHHHHHHhcCCcceEEEEecCChHHHH
Confidence 999988888899 999999999987653
No 2
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.59 E-value=3.8e-15 Score=89.53 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=68.8
Q ss_pred CeeecCCcchHHHHHHHHHhh-hcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHH-HHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNL-KESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQR-KLTLA 78 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a-~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 78 (107)
|||+|+|+.|.+|++||+.+| ++.+ ++|+++||+++..... ... .......+..+ +..++
T Consensus 5 Lv~~D~s~~s~~al~~a~~la~~~~~--a~l~ll~v~~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~ 66 (138)
T 3idf_A 5 LFAIDDTEACERAAQYILDMFGKDAD--CTLTLIHVKPEFMLYG-----EAV-----------LAAYDEIEMKEEEKAKL 66 (138)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTTCTT--EEEEEEEEECCCCCCH-----HHH-----------HHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHhccCCC--CEEEEEEEecCCCccc-----ccc-----------cCcHHHHHHHHHHHHHH
Confidence 699999999999999999999 8865 9999999997654322 100 01122334455 77888
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCCCCCC
Q 033982 79 FLQKVKDILSSQGVKAEMIVEVWDPTMAI 107 (107)
Q Consensus 79 ~l~~~~~~~~~~~v~~~~~v~~Gdp~~~I 107 (107)
.++++.+.+...|++++..+..|+|.+.|
T Consensus 67 ~l~~~~~~~~~~g~~~~~~v~~g~~~~~I 95 (138)
T 3idf_A 67 LTQKFSTFFTEKGINPFVVIKEGEPVEMV 95 (138)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHCCCCeEEEEecCChHHHH
Confidence 99999998888899999999999987653
No 3
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.53 E-value=2.3e-14 Score=87.83 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=67.9
Q ss_pred Ceeec--CCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHH
Q 033982 1 MVAID--ESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLA 78 (107)
Q Consensus 1 lVavD--gS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (107)
|||+| +|+.|.+|++||+++|++.+ ++|+++||+++..... +.. . . ....+..++.+++
T Consensus 19 Lv~vD~~~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~-----~~~-------~-~----~~~~~~~~~~~~~ 79 (156)
T 3fg9_A 19 LLTVDEDDNTSSERAFRYATTLAHDYD--VPLGICSVLESEDINI-----FDS-------L-T----PSKIQAKRKHVED 79 (156)
T ss_dssp EEECCSCCCHHHHHHHHHHHHHHHHHT--CCEEEEEEECCCCTTC-----CCS-------S-H----HHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEEeCCCccc-----ccc-------C-C----HHHHHHHHHHHHH
Confidence 68999 99999999999999999976 9999999997654321 110 0 1 1233445667788
Q ss_pred HHHHHHHHHHhcCC-cEEEEEee-cCCCCCC
Q 033982 79 FLQKVKDILSSQGV-KAEMIVEV-WDPTMAI 107 (107)
Q Consensus 79 ~l~~~~~~~~~~~v-~~~~~v~~-Gdp~~~I 107 (107)
.++++.+.+...|+ .+++.+.. |+|.++|
T Consensus 80 ~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I 110 (156)
T 3fg9_A 80 VVAEYVQLAEQRGVNQVEPLVYEGGDVDDVI 110 (156)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEECSCHHHHH
T ss_pred HHHHHHHHHHHcCCCceEEEEEeCCCHHHHH
Confidence 89988888888899 49999999 9997654
No 4
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.53 E-value=1e-15 Score=92.76 Aligned_cols=94 Identities=16% Similarity=0.067 Sum_probs=66.7
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFL 80 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (107)
|||+|+|+.|.+|++||+++|++.+ ++|+++||+++...... ... .......+...+..++..++.+
T Consensus 6 Lv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~l 72 (147)
T 3hgm_A 6 MVPVDGSKGAVKALEKGVGLQQLTG--AELYILCVFKHHSLLEA----SLS-------MARPEQLDIPDDALKDYATEIA 72 (147)
T ss_dssp EEECCSBHHHHHHHHHHHHHHHHHC--CEEEEEEEECCHHHHHH----TBS-------SCCCGGGCCCTTHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCcccccc----ccc-------ccChhhhhhHHHHHHHHHHHHH
Confidence 6999999999999999999999876 99999999976431110 000 0000010111233456677888
Q ss_pred HHHHHHHHhcCCcE---EEEEeecCCCCCC
Q 033982 81 QKVKDILSSQGVKA---EMIVEVWDPTMAI 107 (107)
Q Consensus 81 ~~~~~~~~~~~v~~---~~~v~~Gdp~~~I 107 (107)
+++.+.++..|+++ +..+..|+|.+.|
T Consensus 73 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I 102 (147)
T 3hgm_A 73 VQAKTRATELGVPADKVRAFVKGGRPSRTI 102 (147)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEEESCHHHHH
T ss_pred HHHHHHHHhcCCCccceEEEEecCCHHHHH
Confidence 88888888889988 9999999987653
No 5
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.52 E-value=2.5e-14 Score=88.14 Aligned_cols=98 Identities=18% Similarity=0.070 Sum_probs=67.2
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCC-----CCcccccccccchhhccCccchh-HHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPT-----KSEFVFTAPFGYARLYSSALTTQ-GFVNCAEEKQRK 74 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 74 (107)
|||+|+|+.|.+|++||+++|++.+ ++|+++||+++. .... +.... .+. .+.. .......+..++
T Consensus 9 Lv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~-----~~~~~-~~~-~~~~~~~~~~~~~~~~~ 79 (162)
T 1mjh_A 9 LYPTDFSETAEIALKHVKAFKTLKA--EEVILLHVIDEREIKKRDIFS-----LLLGV-AGL-NKSVEEFENELKNKLTE 79 (162)
T ss_dssp EEECCSCHHHHHHHHHHHHTCCSSC--CEEEEEEEEEGGGTC------------------------CHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHhhcC--CeEEEEEEecCcccccccccc-----ccccc-ccc-ccchhhhHHHHHHHHHH
Confidence 6899999999999999999999866 999999998653 1101 10000 000 0000 001234455667
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCC
Q 033982 75 LTLAFLQKVKDILSSQGVKAEMIVEVWDPTMAI 107 (107)
Q Consensus 75 ~~~~~l~~~~~~~~~~~v~~~~~v~~Gdp~~~I 107 (107)
.+++.++++.+.+...|+++++.+..|+|.+.|
T Consensus 80 ~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I 112 (162)
T 1mjh_A 80 EAKNKMENIKKELEDVGFKVKDIIVVGIPHEEI 112 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEcCCCHHHHH
Confidence 788889998888888899999999999997654
No 6
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.43 E-value=1e-13 Score=86.04 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=64.7
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchh-HHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQ-GFVNCAEEKQRKLTLAF 79 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (107)
|||+|+|+.|.+|++||+.+|++.+ ++|+++||+++....... ..+.. . +... .....+.+..++.+++.
T Consensus 9 Lv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~-~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T 2dum_A 9 LFPTDFSEGAYRAVEVFEKRNKMEV--GEVILLHVIDEGTLEELM-DGYSF--F----YDNAEIELKDIKEKLKEEASRK 79 (170)
T ss_dssp EEECCSSHHHHHHHHHHHHHCCSCC--SEEEEEEEEETTGGGCCC-------------------CCTTSHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccc-ccccc--c----cccccccHHHHHHHHHHHHHHH
Confidence 6899999999999999999999866 999999998654321100 00000 0 0000 00011223345667778
Q ss_pred HHHHHHHHHhcCCcEEE--EEeecCCCCCC
Q 033982 80 LQKVKDILSSQGVKAEM--IVEVWDPTMAI 107 (107)
Q Consensus 80 l~~~~~~~~~~~v~~~~--~v~~Gdp~~~I 107 (107)
++++.+.+...|++++. .+..|+|.+.|
T Consensus 80 l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I 109 (170)
T 2dum_A 80 LQEKAEEVKRAFRAKNVRTIIRFGIPWDEI 109 (170)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCceeeeeEEecCChHHHH
Confidence 88888887778999888 88899987643
No 7
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.41 E-value=8.7e-14 Score=86.33 Aligned_cols=88 Identities=19% Similarity=0.069 Sum_probs=60.0
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEE--EeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIF--MAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLA 78 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~ll--hV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (107)
|||+|+|+.|.+|++||+++|+ .+ ++|+++ ||+++..... ... .. ...+.+..++..++
T Consensus 21 Lv~vD~s~~s~~al~~A~~lA~-~~--a~l~ll~a~v~~~~~~~~----~~~--------~~----~~~~~~~~~~~~~~ 81 (163)
T 1tq8_A 21 VVGTDGSDSSMRAVDRAAQIAG-AD--AKLIIASAYLPQHEDARA----ADI--------LK----DESYKVTGTAPIYE 81 (163)
T ss_dssp EEECCSSHHHHHHHHHHHHHHT-TT--SEEEEEEECCC------------------------------------CCTHHH
T ss_pred EEEcCCCHHHHHHHHHHHHHhC-CC--CEEEEEEeeeccCccccc----ccc--------cc----cHHHHHHHHHHHHH
Confidence 6999999999999999999999 76 999999 8775432201 010 00 01122334566778
Q ss_pred HHHHHHHHHHhcCCc-EEEEEeecCCCCCC
Q 033982 79 FLQKVKDILSSQGVK-AEMIVEVWDPTMAI 107 (107)
Q Consensus 79 ~l~~~~~~~~~~~v~-~~~~v~~Gdp~~~I 107 (107)
.++++.+.+...|++ ++..+..|+|.++|
T Consensus 82 ~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I 111 (163)
T 1tq8_A 82 ILHDAKERAHNAGAKNVEERPIVGAPVDAL 111 (163)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEECSSHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEecCCHHHHH
Confidence 888888888888998 99999999987653
No 8
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.40 E-value=9.1e-13 Score=81.07 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=59.5
Q ss_pred CeeecC-CcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDE-SEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAF 79 (107)
Q Consensus 1 lVavDg-S~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (107)
|||+|+ |+.|.+|++||+.+|+..+ ++|+++||.++.... . +...+..++.
T Consensus 28 Lv~vD~~s~~s~~al~~A~~la~~~~--a~l~llhV~~~~~~~------------------~--------~~~~~~~~~~ 79 (155)
T 3dlo_A 28 VVAVDKKSDRAERVLRFAAEEARLRG--VPVYVVHSLPGGGRT------------------K--------DEDIIEAKET 79 (155)
T ss_dssp EEECCSSSHHHHHHHHHHHHHHHHHT--CCEEEEEEECCSTTS------------------C--------HHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEEcCCCcc------------------c--------HHHHHHHHHH
Confidence 699999 9999999999999999876 999999998743211 0 1123345677
Q ss_pred HHHHHHHHHhcCCcEEEE--EeecCCCCCC
Q 033982 80 LQKVKDILSSQGVKAEMI--VEVWDPTMAI 107 (107)
Q Consensus 80 l~~~~~~~~~~~v~~~~~--v~~Gdp~~~I 107 (107)
++++.+.++..|++++.. +..|+|.++|
T Consensus 80 l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I 109 (155)
T 3dlo_A 80 LSWAVSIIRKEGAEGEEHLLVRGKEPPDDI 109 (155)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESSSCHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEecCCCHHHHH
Confidence 777877778788887754 5569987653
No 9
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.38 E-value=3.4e-13 Score=81.29 Aligned_cols=89 Identities=17% Similarity=0.106 Sum_probs=57.3
Q ss_pred CeeecCCcc--hHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQ--SHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLA 78 (107)
Q Consensus 1 lVavDgS~~--S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (107)
|||+|+|+. |.+|++||+.+|++.+ ++|+++||+++...... +... + .. . .+...+..++
T Consensus 5 Lv~vD~s~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~----~~~~------~-~~-~----~~~~~~~~~~ 66 (143)
T 3fdx_A 5 LVPIDISDKEFTERIISHVESEARIDD--AEVHFLTVIPSLPYYAS----LGMA------Y-TA-E----LPGMDELREG 66 (143)
T ss_dssp EEECCTTCSSCCTTHHHHHHHHHHHHT--CEEEEEEEECC--------------------------------CHHHHHHH
T ss_pred EEEecCChHhhHHHHHHHHHHHHHhcC--CeEEEEEEecCCccccc----cccc------c-cc-h----hhhHHHHHHH
Confidence 699999999 9999999999999876 99999999976543221 1100 0 00 0 1112333445
Q ss_pred HHHHHHHHHHhcC---CcEEEEEeecCCCCCC
Q 033982 79 FLQKVKDILSSQG---VKAEMIVEVWDPTMAI 107 (107)
Q Consensus 79 ~l~~~~~~~~~~~---v~~~~~v~~Gdp~~~I 107 (107)
.++.+.+.+++.+ +.++..+..|+|.++|
T Consensus 67 ~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I 98 (143)
T 3fdx_A 67 SETQLKEIAKKFSIPEDRMHFHVAEGSPKDKI 98 (143)
T ss_dssp HHHHHHHHHTTSCCCGGGEEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCceEEEEEecChHHHH
Confidence 6666666666655 4578889999987653
No 10
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.37 E-value=3e-13 Score=89.25 Aligned_cols=100 Identities=19% Similarity=0.116 Sum_probs=66.7
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFL 80 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (107)
|||+|+|+.|.+|++||+.+|++.+ ++|+++||+++....... ..+..... ....+..+...+..++.+++.+
T Consensus 4 Lv~vD~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 76 (268)
T 3ab8_A 4 LLATDGSPQARGAEALAEWLAYKLS--APLTVLFVVDTRLARIPE--LLDFGALT---VPVPVLRTELERALALRGEAVL 76 (268)
T ss_dssp EEECCSCGGGHHHHHHHHHHHHHHT--CCEEEEEEEEHHHHTHHH--HC----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCccccc--ccCchHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999876 999999998643211000 00000000 0000011111334556678889
Q ss_pred HHHHHHHHhcCCcEEEEEeecCCCCCC
Q 033982 81 QKVKDILSSQGVKAEMIVEVWDPTMAI 107 (107)
Q Consensus 81 ~~~~~~~~~~~v~~~~~v~~Gdp~~~I 107 (107)
+++.+.+...|+++++.+..|+|.+.|
T Consensus 77 ~~~~~~~~~~g~~~~~~~~~g~~~~~I 103 (268)
T 3ab8_A 77 ERVRQSALAAGVAVEAVLEEGVPHEAI 103 (268)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEecCCHHHHH
Confidence 998888888899999999999987643
No 11
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.36 E-value=3.7e-13 Score=80.78 Aligned_cols=85 Identities=21% Similarity=0.222 Sum_probs=56.5
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFL 80 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (107)
|||+|+|+.|.+|++||+++|++++ ++|+++||.++... . +.. . .. +...+..++..++.+
T Consensus 6 Lv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~-~-----~~~-------~-~~---~~~~~~~~~~~~~~l 66 (137)
T 2z08_A 6 LLAYDGSEHARRAAEVAKAEAEAHG--ARLIVVHAYEPVPD-Y-----LGE-------P-FF---EEALRRRLERAEGVL 66 (137)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCCCc-c-----ccc-------c-ch---HHHHHHHHHHHHHHH
Confidence 6899999999999999999999876 99999999974321 1 100 0 00 111223344556666
Q ss_pred HHHHHHHHhcCC-cEEEEEeecCCCCCC
Q 033982 81 QKVKDILSSQGV-KAEMIVEVWDPTMAI 107 (107)
Q Consensus 81 ~~~~~~~~~~~v-~~~~~v~~Gdp~~~I 107 (107)
+++.+. .|+ +++..+..|+|.+.|
T Consensus 67 ~~~~~~---~g~~~~~~~~~~g~~~~~I 91 (137)
T 2z08_A 67 EEARAL---TGVPKEDALLLEGVPAEAI 91 (137)
T ss_dssp HHHHHH---HCCCGGGEEEEESSHHHHH
T ss_pred HHHHHH---cCCCccEEEEEecCHHHHH
Confidence 665443 688 888888899987643
No 12
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.36 E-value=1.1e-12 Score=81.78 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=62.7
Q ss_pred CeeecCCc---------chHHHHHHHHHhhhcc-cCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHH
Q 033982 1 MVAIDESE---------QSHYALMWVLDNLKES-ISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEE 70 (107)
Q Consensus 1 lVavDgS~---------~S~~Al~~A~~~a~~~-g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (107)
|||+|+|+ .|.+|++||++++.+. ..+++|+++||+++...... ..... +........+.+
T Consensus 9 Lv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~---~~~~~------~~~~~~~~~~~~ 79 (175)
T 2gm3_A 9 MVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFD---DVDSI------YASPEDFRDMRQ 79 (175)
T ss_dssp EEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-------------CC------CCSHHHHHHHTT
T ss_pred EEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccccccc---ccccc------cCCHHHHHHHHH
Confidence 69999999 9999999999987442 11389999999864321110 00000 001111222233
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCC
Q 033982 71 KQRKLTLAFLQKVKDILSSQGVKAEMIVEVWDPTMAI 107 (107)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~v~~~~~v~~Gdp~~~I 107 (107)
..++..++.++++.+.+...|++++..+..|+|.+.|
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I 116 (175)
T 2gm3_A 80 SNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVI 116 (175)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHH
Confidence 3445567788888888887899999999999987653
No 13
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.35 E-value=1.9e-12 Score=87.22 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=67.3
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFL 80 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (107)
||++|+|+.|..|++||+.+|++.+ ++|+++||+++.+... .. +........+.+...+.+++.+
T Consensus 11 Lv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~l 75 (319)
T 3olq_A 11 LVVIDPNQDDQPALRRAVYIVQRNG--GRIKAFLPVYDLSYDM------TT-------LLSPDERNAMRKGVINQKTAWI 75 (319)
T ss_dssp EEECCTTCSCCHHHHHHHHHHHHHC--CEEEEEEEECCGGGGC------TT-------TSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHHHcC--CeEEEEEEecccchhh------cc-------ccChhhHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999977 9999999986533211 00 0011222334445566677888
Q ss_pred HHHHHHHHhcCCcEEEEEe-ecCCCCC
Q 033982 81 QKVKDILSSQGVKAEMIVE-VWDPTMA 106 (107)
Q Consensus 81 ~~~~~~~~~~~v~~~~~v~-~Gdp~~~ 106 (107)
+++.+.+...|+++++.+. .|+|.+.
T Consensus 76 ~~~~~~~~~~~v~~~~~~~~~g~~~~~ 102 (319)
T 3olq_A 76 KQQARYYLEAGIQIDIKVIWHNRPYEA 102 (319)
T ss_dssp HHHHHHHHHTTCCEEEEEEECSCHHHH
T ss_pred HHHHHHHhhcCCeEEEEEEecCChHHH
Confidence 8888887788999999888 8998654
No 14
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.32 E-value=5.2e-13 Score=81.13 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=55.4
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFL 80 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (107)
|||+|+|+.|.+|++||+.+|++.+ ++|+++||+++...... .+.... +....+. .+...+.+++.+
T Consensus 10 Lv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~---~~~~~~----~~~~~~~----~~~~~~~~~~~l 76 (150)
T 3tnj_A 10 LLAVDFSSEDSQVVQKVRNLASQIG--ARLSLIHVLDNIPMPDT---PYGTAI----PLDTETT----YDAMLDVEKQKL 76 (150)
T ss_dssp EEECCCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEC-----------CTTCC----CSSSCCC----HHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEEcCcccccc---cccccc----CcCHHHH----HHHHHHHHHHHH
Confidence 6999999999999999999999976 99999999976432100 000000 0001111 122344455555
Q ss_pred HHHHHHHHhcCCc-EEEEEeecCCCCCC
Q 033982 81 QKVKDILSSQGVK-AEMIVEVWDPTMAI 107 (107)
Q Consensus 81 ~~~~~~~~~~~v~-~~~~v~~Gdp~~~I 107 (107)
+++.+ +.|++ ++..+..|+|.+.|
T Consensus 77 ~~~~~---~~~~~~~~~~~~~g~~~~~I 101 (150)
T 3tnj_A 77 SQIGN---TLGIDPAHRWLVWGEPREEI 101 (150)
T ss_dssp HHHHH---HHTCCGGGEEEEESCHHHHH
T ss_pred HHHHH---HcCCCcceEEEecCCHHHHH
Confidence 55433 34777 57788899987653
No 15
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.32 E-value=3.1e-12 Score=86.11 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=64.1
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFL 80 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (107)
||++|+|+.|..|++||+.+|++.+ ++|+++||+++..... .... . .. ...+..++.+++.+
T Consensus 23 Lv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~----~~~~-------~-~~----~~~~~~~~~~~~~l 84 (309)
T 3cis_A 23 IVGIDDSPAAQVAVRWAARDAELRK--IPLTLVHAVSPEVATW----LEVP-------L-PP----GVLRWQQDHGRHLI 84 (309)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHHHT--CCEEEEEECCCCCCCT----TCCC-------C-CH----HHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhcC--CcEEEEEEecCccccc----ccCC-------C-Cc----hhhHHHHHHHHHHH
Confidence 6999999999999999999999876 9999999987432110 0000 1 11 12233455667788
Q ss_pred HHHHHHHHhc-----CCcEEEEEeecCCCCCC
Q 033982 81 QKVKDILSSQ-----GVKAEMIVEVWDPTMAI 107 (107)
Q Consensus 81 ~~~~~~~~~~-----~v~~~~~v~~Gdp~~~I 107 (107)
+++.+.+... |++++..+..|+|.+.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I 116 (309)
T 3cis_A 85 DDALKVVEQASLRAGPPTVHSEIVPAAAVPTL 116 (309)
T ss_dssp HHHHHHHHHHCSSSCCSCEEEEEESSCHHHHH
T ss_pred HHHHHHHHHhcccCCCceEEEEEecCCHHHHH
Confidence 8887777765 89999999999987643
No 16
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.30 E-value=3.5e-13 Score=90.14 Aligned_cols=90 Identities=22% Similarity=0.206 Sum_probs=66.0
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFL 80 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (107)
|||+|+|+.|..|++||+.+|++.+ ++|+++||+++...... ... .... ...+..++.+++.+
T Consensus 26 Lv~vD~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~----~~~-------~~~~----~~~~~~~~~~~~~l 88 (294)
T 3loq_A 26 LLPTDLSENSFKVLEYLGDFKKVGV--EEIGVLFVINLTKLSTV----SGG-------IDID----HYIDEMSEKAEEVL 88 (294)
T ss_dssp EEECCSCTGGGGGGGGHHHHHHTTC--CEEEEECCEECTTC---------C-------CCTT----HHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCcccccc----ccc-------ccHH----HHHHHHHHHHHHHH
Confidence 6999999999999999999999866 99999999976543210 000 0011 22344556778888
Q ss_pred HHHHHHHHhcCCcEEE-EEe-ecCCCCCC
Q 033982 81 QKVKDILSSQGVKAEM-IVE-VWDPTMAI 107 (107)
Q Consensus 81 ~~~~~~~~~~~v~~~~-~v~-~Gdp~~~I 107 (107)
+++.+.+...|++++. .+. .|+|.+.|
T Consensus 89 ~~~~~~~~~~g~~~~~~~v~~~g~~~~~I 117 (294)
T 3loq_A 89 PEVAQKIEAAGIKAEVIKPFPAGDPVVEI 117 (294)
T ss_dssp HHHHHHHHHTTCEEEECSSCCEECHHHHH
T ss_pred HHHHHHHHHcCCCcceeEeeccCChhHhe
Confidence 8888888888999998 777 89987543
No 17
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.27 E-value=4e-12 Score=76.25 Aligned_cols=91 Identities=13% Similarity=-0.050 Sum_probs=59.1
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEee-CCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQ-PPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAF 79 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (107)
|||+|+|+.|.+|++||+++|++.+ ++|+++||+ +..+..... .... .+.. ....+...+..++.
T Consensus 8 Lv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~--~~~~-------~~~~---~~~~~~~~~~~~~~ 73 (138)
T 1q77_A 8 LVLTDAYSDCEKAITYAVNFSEKLG--AELDILAVLEDVYNLERAN--VTFG-------LPFP---PEIKEESKKRIERR 73 (138)
T ss_dssp EEEESTTCCCHHHHHHHHHHHTTTC--CEEEEEEECHHHHHHHHHH--HHHC-------CCCC---THHHHHHHHHHHHH
T ss_pred EEEccCCHhHHHHHHHHHHHHHHcC--CeEEEEEEecccccccccc--cccC-------CCCC---hHHHHHHHHHHHHH
Confidence 6899999999999999999999866 999999998 530100000 0000 0000 11223345556677
Q ss_pred HHHHHHHH--HhcCCcEEEEEeecCCCCCC
Q 033982 80 LQKVKDIL--SSQGVKAEMIVEVWDPTMAI 107 (107)
Q Consensus 80 l~~~~~~~--~~~~v~~~~~v~~Gdp~~~I 107 (107)
++++ +.+ ...| ++++.+..|+|.+.|
T Consensus 74 l~~~-~~~~~~~~~-~~~~~~~~g~~~~~I 101 (138)
T 1q77_A 74 LREV-WEKLTGSTE-IPGVEYRIGPLSEEV 101 (138)
T ss_dssp HHHH-HHHHHSCCC-CCCEEEECSCHHHHH
T ss_pred HHHH-HHHhhccCC-cceEEEEcCCHHHHH
Confidence 7777 653 4457 788888899987643
No 18
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.22 E-value=5e-12 Score=75.98 Aligned_cols=88 Identities=17% Similarity=0.053 Sum_probs=55.7
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFL 80 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (107)
|||+|+|+.|.+|++||+.+|++.+ ++|+++||.++.+.... .+.. . ......+..++..++.+
T Consensus 6 Lv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~---~~~~----------~-~~~~~~~~~~~~~~~~l 69 (141)
T 1jmv_A 6 LVAVDLSEESPILLKKAVGIAKRHD--AKLSIIHVDVNFSDLYT---GLID----------V-NMSSMQDRISTETQKAL 69 (141)
T ss_dssp EEEECCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEECCGGGCC---CCEE----------H-HHHHHTTCCCCHHHHHH
T ss_pred EEEecCchhhHHHHHHHHHHHHhcC--CEEEEEEEecCchhhhc---cccc----------c-chHHHHHHHHHHHHHHH
Confidence 6899999999999999999999876 99999999854221110 1110 0 11111122233444555
Q ss_pred HHHHHHHHhcCCcE-EEEEeecCCCCCC
Q 033982 81 QKVKDILSSQGVKA-EMIVEVWDPTMAI 107 (107)
Q Consensus 81 ~~~~~~~~~~~v~~-~~~v~~Gdp~~~I 107 (107)
+++ ++..|+++ +..+..|+|.+.|
T Consensus 70 ~~~---~~~~~~~~~~~~~~~g~~~~~I 94 (141)
T 1jmv_A 70 LDL---AESVDYPISEKLSGSGDLGQVL 94 (141)
T ss_dssp HHH---HHHSSSCCCCEEEEEECHHHHH
T ss_pred HHH---HHHcCCCceEEEEecCCHHHHH
Confidence 544 33457776 5778889987643
No 19
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.03 E-value=3.9e-10 Score=75.84 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=56.7
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFL 80 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (107)
|||+|+|+.|.+|++||+.+|+..+ ++|+++||+++..... ... ... .. ..+..++.+
T Consensus 175 lv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~-----~~~----------~~~-~~----~~~~~~~~l 232 (309)
T 3cis_A 175 LVGVDGSSASELATAIAFDEASRRN--VDLVALHAWSDVDVSE-----WPG----------IDW-PA----TQSMAEQVL 232 (309)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHHTT--CCEEEEEESCSSCCTT-----CSS----------CCH-HH----HHHHHHHHH
T ss_pred EEEeCCChHHHHHHHHHHHHHHhcC--CEEEEEEEeecccccC-----CCc----------ccH-HH----HHHHHHHHH
Confidence 6899999999999999999999866 9999999986543211 100 001 11 122333444
Q ss_pred HHHHHHHHh--cCCcEEEEEeecCCCCCC
Q 033982 81 QKVKDILSS--QGVKAEMIVEVWDPTMAI 107 (107)
Q Consensus 81 ~~~~~~~~~--~~v~~~~~v~~Gdp~~~I 107 (107)
+++.+.+.. .|++++..+..|+|.+.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I 261 (309)
T 3cis_A 233 AERLAGWQERYPNVAITRVVVRDQPARQL 261 (309)
T ss_dssp HHHHTTHHHHCTTSCEEEEEESSCHHHHH
T ss_pred HHHHHHHHhhCCCCcEEEEEEcCCHHHHH
Confidence 444433333 589999989999987643
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.94 E-value=8.8e-10 Score=73.50 Aligned_cols=84 Identities=13% Similarity=0.070 Sum_probs=53.5
Q ss_pred CeeecCCcc-------hHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHH
Q 033982 1 MVAIDESEQ-------SHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQR 73 (107)
Q Consensus 1 lVavDgS~~-------S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (107)
|||+|+|+. |.+|++||+++|+..+ ++|+++||+++..... .. .+. ...+..+
T Consensus 138 lva~D~s~~~~~~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~------~~----------~~~--~~~~~~~ 197 (290)
T 3mt0_A 138 LAAVDVGNNDGEHRSLHAGIISHAYDIAGLAK--ATLHVISAHPSPMLSS------AD----------PTF--QLSETIE 197 (290)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHHHHHHHHHTT--CEEEEEEEEC-------------------------CH--HHHHHHH
T ss_pred EEEECCCCcchhhhHHHHHHHHHHHHHHHHcC--CeEEEEEEecCccccc------cC----------chh--HHHHHHH
Confidence 689999998 9999999999999876 9999999997643221 00 001 1222233
Q ss_pred HHHHHHHHHHHHHHHhcCCc-EEEEEeecCCCCCC
Q 033982 74 KLTLAFLQKVKDILSSQGVK-AEMIVEVWDPTMAI 107 (107)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~v~-~~~~v~~Gdp~~~I 107 (107)
+..++.++++ +++.|++ ++..+..|+|.+.|
T Consensus 198 ~~~~~~l~~~---~~~~g~~~~~~~v~~g~~~~~I 229 (290)
T 3mt0_A 198 ARYREACRTF---QAEYGFSDEQLHIEEGPADVLI 229 (290)
T ss_dssp HHHHHHHHHH---HHHHTCCTTTEEEEESCHHHHH
T ss_pred HHHHHHHHHH---HHHcCCCcceEEEeccCHHHHH
Confidence 3444444443 3345774 66788889987643
No 21
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.88 E-value=3.1e-09 Score=69.91 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=53.4
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFL 80 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (107)
|||+|+|+.|.+|+++|.+++...+ ++|+++||.++. . ..++.+
T Consensus 158 lv~~d~s~~~~~al~~a~~la~~~~--a~l~ll~v~~~~----------------------~------------~~~~~l 201 (268)
T 3ab8_A 158 LLGYDASESAVRALHALAPLARALG--LGVRVVSVHEDP----------------------A------------RAEAWA 201 (268)
T ss_dssp EEECCSCHHHHHHHHHHHHHHHHHT--CCEEEEEECSSH----------------------H------------HHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHhhhcCC--CEEEEEEEcCcH----------------------H------------HHHHHH
Confidence 6899999999999999999999876 899999996421 0 012233
Q ss_pred HHHHHHHHhcCCcEEEEEeecCCCCCC
Q 033982 81 QKVKDILSSQGVKAEMIVEVWDPTMAI 107 (107)
Q Consensus 81 ~~~~~~~~~~~v~~~~~v~~Gdp~~~I 107 (107)
+++.+.+...|++++..+..|+|.+.|
T Consensus 202 ~~~~~~l~~~~~~~~~~~~~g~~~~~i 228 (268)
T 3ab8_A 202 LEAEAYLRDHGVEASALVLGGDAADHL 228 (268)
T ss_dssp HHHHHHHHHTTCCEEEEEECSCHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCChHHHH
Confidence 444455556799999888889987643
No 22
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.85 E-value=2.2e-09 Score=71.57 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=33.1
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeC
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQP 37 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~ 37 (107)
||++|+|+.|..|++||+.+|++.+ ++|+++||.+
T Consensus 11 Lv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~ 45 (290)
T 3mt0_A 11 LVVIEPDQLEGLALKRAQLIAGVTQ--SHLHLLVCEK 45 (290)
T ss_dssp EEECCSSCSCCHHHHHHHHHHHHHC--CEEEEEEECS
T ss_pred EEEeCCCccchHHHHHHHHHHHhcC--CeEEEEEeeC
Confidence 6899999999999999999999976 9999999986
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.81 E-value=8.4e-09 Score=69.32 Aligned_cols=89 Identities=13% Similarity=0.017 Sum_probs=56.4
Q ss_pred CeeecCCc-------chHHHHHHHHHhhhcc--cCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHH
Q 033982 1 MVAIDESE-------QSHYALMWVLDNLKES--ISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEK 71 (107)
Q Consensus 1 lVavDgS~-------~S~~Al~~A~~~a~~~--g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (107)
|||+|||+ .|.+|++||+.+++.. + ++|+++||+++...... ... +.. ......+.
T Consensus 160 lva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~--a~l~ll~v~~~~~~~~~----~~~--------~~~-~~~~~~~~ 224 (319)
T 3olq_A 160 VVAANLSNEESYHDALNLKLIELTNDLSHRIQKD--PDVHLLSAYPVAPINIA----IEL--------PDF-DPNLYNNA 224 (319)
T ss_dssp EEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSS--CCEEEEEEECCCSCSCC----TTC--------TTC-CHHHHHHH
T ss_pred EEEECCCCcchhHHHHHHHHHHHHHHHHHhccCC--CeEEEEEeecCcchhhh----ccC--------Ccc-cHHHHHHH
Confidence 68999999 5799999999999987 6 99999999976543220 000 000 11222333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc-EEEEEeecCCCCCC
Q 033982 72 QRKLTLAFLQKVKDILSSQGVK-AEMIVEVWDPTMAI 107 (107)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~v~-~~~~v~~Gdp~~~I 107 (107)
.++..++.++.+ +++.|+. ++..+..|+|.+.|
T Consensus 225 ~~~~~~~~l~~~---~~~~~~~~~~~~v~~g~~~~~I 258 (319)
T 3olq_A 225 LRGQHLIAMKEL---RQKFSIPEEKTHVKEGLPEQVI 258 (319)
T ss_dssp HHHHHHHHHHHH---HHHTTCCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHHHH---HHHhCCCcccEEEecCCcHHHH
Confidence 344445555443 3445664 56778889986543
No 24
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.81 E-value=6e-09 Score=69.49 Aligned_cols=70 Identities=23% Similarity=0.225 Sum_probs=52.5
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHH
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFL 80 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (107)
|||+|+|+.|.+|++||+.+++..+ ++|+++||.++.. . ++.+
T Consensus 174 lv~~d~s~~s~~al~~a~~la~~~~--~~l~ll~v~~~~~--~---------------------------------~~~l 216 (294)
T 3loq_A 174 LVAYDFSKWADRALEYAKFVVKKTG--GELHIIHVSEDGD--K---------------------------------TADL 216 (294)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEECSSSC--C---------------------------------HHHH
T ss_pred EEEECCCHHHHHHHHHHHHHhhhcC--CEEEEEEEccCch--H---------------------------------HHHH
Confidence 6899999999999999999999876 9999999975421 0 1223
Q ss_pred HHHHHHHHhcCCcEEEEEeecCCCCCC
Q 033982 81 QKVKDILSSQGVKAEMIVEVWDPTMAI 107 (107)
Q Consensus 81 ~~~~~~~~~~~v~~~~~v~~Gdp~~~I 107 (107)
+++.+.++..|++++..+..|+|.+.|
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~g~~~~~I 243 (294)
T 3loq_A 217 RVMEEVIGAEGIEVHVHIESGTPHKAI 243 (294)
T ss_dssp HHHHHHHHHTTCCEEEEEECSCHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEecCCHHHHH
Confidence 333344455788888888889886543
No 25
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=66.58 E-value=26 Score=24.64 Aligned_cols=26 Identities=4% Similarity=-0.207 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+++-.++|++.|.+++ .+|+++|=
T Consensus 185 ~~~eRiar~AF~~A~~~~--~~vt~v~K 210 (402)
T 4aoy_A 185 KSIRSFARACFNYALDMN--QDLWFSTK 210 (402)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CcEEEEEC
Confidence 457788888888887765 68888883
No 26
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=63.39 E-value=25 Score=22.04 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=19.3
Q ss_pred chHHHHHHHHHhhhcccCCCcEEEEE
Q 033982 9 QSHYALMWVLDNLKESISKFPLIIFM 34 (107)
Q Consensus 9 ~S~~Al~~A~~~a~~~g~~~~l~llh 34 (107)
.+...++.+++.|+..| ++.+++|
T Consensus 82 ~~~~~~~~~i~~a~~lG--~~~v~~~ 105 (260)
T 1k77_A 82 EAHADIDLALEYALALN--CEQVHVM 105 (260)
T ss_dssp HHHHHHHHHHHHHHHTT--CSEEECC
T ss_pred HHHHHHHHHHHHHHHcC--CCEEEEC
Confidence 45678899999999987 8877666
No 27
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=62.84 E-value=40 Score=24.28 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhhhcccCCCcEEEEEeeCCC
Q 033982 10 SHYALMWVLDNLKESISKFPLIIFMAQPPT 39 (107)
Q Consensus 10 S~~Al~~A~~~a~~~g~~~~l~llhV~~~~ 39 (107)
-..||..|++.|.+.| .+|+.|+|.++.
T Consensus 52 DN~AL~~A~~~a~~~~--~pVl~vfildp~ 79 (506)
T 3umv_A 52 DNWALLHAAGLAAASA--SPLAVAFALFPR 79 (506)
T ss_dssp TCHHHHHHHHHHHHHT--CCEEEEEECCCT
T ss_pred hcHHHHHHHHhhhhcC--CCEEEEEeccch
Confidence 3468889998887655 789999999764
No 28
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=61.92 E-value=27 Score=22.05 Aligned_cols=57 Identities=9% Similarity=-0.105 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhcccCCCcEEEEEeeCCCCCcccccccccchhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033982 12 YALMWVLDNLKESISKFPLIIFMAQPPTKSEFVFTAPFGYARLYSSALTTQGFVNCAEEKQRKLTLAFLQKVKDILSSQG 91 (107)
Q Consensus 12 ~Al~~A~~~a~~~g~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 91 (107)
..++.+++.|+..| ++.+++++.+.. . . .. +...+...+.+.++.+.+++.|
T Consensus 84 ~~~~~~i~~A~~lG--~~~v~~~~~p~~----------~--------~-~~-------~~~~~~~~~~l~~l~~~a~~~G 135 (281)
T 3u0h_A 84 SLLPDRARLCARLG--ARSVTAFLWPSM----------D--------E-EP-------VRYISQLARRIRQVAVELLPLG 135 (281)
T ss_dssp HTHHHHHHHHHHTT--CCEEEEECCSEE----------S--------S-CH-------HHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHcC--CCEEEEeecCCC----------C--------C-cc-------hhhHHHHHHHHHHHHHHHHHcC
Confidence 35677889999987 787776643210 0 0 00 0122334556677777777788
Q ss_pred CcEEE
Q 033982 92 VKAEM 96 (107)
Q Consensus 92 v~~~~ 96 (107)
|++-.
T Consensus 136 v~l~l 140 (281)
T 3u0h_A 136 MRVGL 140 (281)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87543
No 29
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=61.38 E-value=28 Score=22.06 Aligned_cols=24 Identities=8% Similarity=-0.179 Sum_probs=18.9
Q ss_pred chHHHHHHHHHhhhcccCCCcEEEEE
Q 033982 9 QSHYALMWVLDNLKESISKFPLIIFM 34 (107)
Q Consensus 9 ~S~~Al~~A~~~a~~~g~~~~l~llh 34 (107)
.+...++.+++.|+..| ++.+++|
T Consensus 90 ~~~~~~~~~i~~A~~lG--a~~v~~~ 113 (269)
T 3ngf_A 90 EFRDNVDIALHYALALD--CRTLHAM 113 (269)
T ss_dssp HHHHHHHHHHHHHHHTT--CCEEECC
T ss_pred HHHHHHHHHHHHHHHcC--CCEEEEc
Confidence 35577889999999987 7877665
No 30
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=60.94 E-value=20 Score=23.43 Aligned_cols=23 Identities=13% Similarity=-0.042 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhhhcccCCCcEEEEE
Q 033982 10 SHYALMWVLDNLKESISKFPLIIFM 34 (107)
Q Consensus 10 S~~Al~~A~~~a~~~g~~~~l~llh 34 (107)
+...++.+++.|+..| ++.+++|
T Consensus 112 ~~~~~~~~i~~A~~lG--a~~v~~~ 134 (316)
T 3qxb_A 112 GYQHLKRAIDMTAAME--VPATGMP 134 (316)
T ss_dssp HHHHHHHHHHHHHHTT--CCEEEEC
T ss_pred HHHHHHHHHHHHHHcC--CCEEEec
Confidence 4567889999999988 8877655
No 31
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=58.03 E-value=38 Score=23.94 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=27.1
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeC
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQP 37 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~ 37 (107)
|||+-|-..|...+.+..++..+.| .++.++||-.
T Consensus 22 lVa~SGG~DS~~Ll~ll~~~~~~~~--~~v~avhvdh 56 (464)
T 3a2k_A 22 IVGVSGGPDSLALLHVFLSLRDEWK--LQVIAAHVDH 56 (464)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHTTT--CBCEEEEEEC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHcC--CeEEEEEEEC
Confidence 4778888888888888877766555 7899999953
No 32
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=57.42 E-value=42 Score=23.75 Aligned_cols=27 Identities=7% Similarity=-0.096 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+.+++..++|++.|++++ .+|+++|=.
T Consensus 203 ~~ieRIar~AFe~A~~r~--~kVt~v~Ka 229 (427)
T 2qfy_A 203 ESIEGFAHSSFKLAIDKK--LNLFLSTKN 229 (427)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCEEEEECT
T ss_pred HHHHHHHHHHHHHHHHhC--CceEEEECC
Confidence 567888888888888765 578888843
No 33
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=55.86 E-value=47 Score=23.29 Aligned_cols=27 Identities=0% Similarity=-0.225 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+.+++-.++|++.|++++ .+|+++|=.
T Consensus 184 ~~~eRiar~AFe~A~~r~--~kVt~v~Ka 210 (402)
T 2uxq_A 184 ASIGHFARACFEYSLDQK--IDCWFATKD 210 (402)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCEEEEECT
T ss_pred HHHHHHHHHHHHHHHHcC--CcEEEEECC
Confidence 567888888888888764 578888843
No 34
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=55.41 E-value=50 Score=23.08 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=25.1
Q ss_pred CeeecCCcchHHHHHHHHHhhhc-ccCCCcEEEEEeeC
Q 033982 1 MVAIDESEQSHYALMWVLDNLKE-SISKFPLIIFMAQP 37 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~-~g~~~~l~llhV~~ 37 (107)
+||+-|=..|...+....+...+ .| .++.++||-.
T Consensus 17 lVa~SGG~DS~~Ll~ll~~~~~~~~g--~~v~avhvdh 52 (433)
T 1ni5_A 17 LVAFSGGLDSTVLLHQLVQWRTENPG--VALRAIHVHH 52 (433)
T ss_dssp EEECCSBHHHHHHHHHHHHHHTTSTT--CEEEEEEECC
T ss_pred EEEEcchHHHHHHHHHHHHHHHhcCC--CeEEEEEEEC
Confidence 46777777788777777766554 44 7899999953
No 35
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=53.59 E-value=57 Score=23.11 Aligned_cols=26 Identities=8% Similarity=-0.091 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+++-.++|++.|++++ .+|+++|=
T Consensus 208 ~~~eRiar~AFe~A~~r~--kkVt~v~K 233 (427)
T 3us8_A 208 ESITEFARASFNYGLQRK--VPVYLSTK 233 (427)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CcEEEEEC
Confidence 356788888888887765 68888884
No 36
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=53.42 E-value=42 Score=21.52 Aligned_cols=23 Identities=4% Similarity=-0.054 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhhhcccCCCcEEEEE
Q 033982 10 SHYALMWVLDNLKESISKFPLIIFM 34 (107)
Q Consensus 10 S~~Al~~A~~~a~~~g~~~~l~llh 34 (107)
+...++.+++.|+..| ++.+++|
T Consensus 106 ~~~~~~~~i~~A~~lG--~~~v~~~ 128 (295)
T 3cqj_A 106 GLEIMRKAIQFAQDVG--IRVIQLA 128 (295)
T ss_dssp HHHHHHHHHHHHHHHT--CCEEEEC
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEC
Confidence 4567899999999988 8887776
No 37
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=53.36 E-value=56 Score=22.98 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=20.3
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+.+++-+++|++.|++++ .+|+++|=.
T Consensus 187 ~~~eRiar~AFe~A~~r~--~kVt~v~Ka 213 (413)
T 1lwd_A 187 ESISGFAHSCFQYAIQKK--WPLYMSTKN 213 (413)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCEEEEECT
T ss_pred HHHHHHHHHHHHHHHHhC--CceEEEECC
Confidence 567778888888887764 578888843
No 38
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=51.92 E-value=41 Score=21.01 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 10 SHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 10 S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+...++.+++.|+..| ++.+++|.
T Consensus 74 ~~~~~~~~i~~A~~lG--a~~v~~~~ 97 (254)
T 3ayv_A 74 TLRRLLFGLDRAAELG--ADRAVFHS 97 (254)
T ss_dssp HHHHHHHHHHHHHHTT--CSEEEEEC
T ss_pred HHHHHHHHHHHHHHhC--CCEEEECC
Confidence 4567889999999987 88888873
No 39
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=50.68 E-value=46 Score=21.21 Aligned_cols=25 Identities=12% Similarity=-0.136 Sum_probs=20.6
Q ss_pred chHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 9 QSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 9 ~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
.+...++.+++.|+..| ++.+++|.
T Consensus 99 ~~~~~~~~~i~~a~~lG--~~~v~~~~ 123 (290)
T 3tva_A 99 SRVAEMKEISDFASWVG--CPAIGLHI 123 (290)
T ss_dssp HHHHHHHHHHHHHHHHT--CSEEEECC
T ss_pred HHHHHHHHHHHHHHHcC--CCEEEEcC
Confidence 45678899999999988 88888873
No 40
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=50.40 E-value=20 Score=17.00 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 033982 64 FVNCAEEKQRKLTLAFLQKVKDILSSQGV 92 (107)
Q Consensus 64 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 92 (107)
....++.++.+..+++++.....+++.|+
T Consensus 16 IL~E~RkElqK~K~EIIeAi~~El~~~~~ 44 (45)
T 1use_A 16 LLEEVKKELQKVKEEIIEAFVQELRKRGS 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44455556666666777766666555443
No 41
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=50.29 E-value=50 Score=21.53 Aligned_cols=24 Identities=4% Similarity=-0.179 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 10 SHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 10 S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+...++.+++.|+..| ++.+++|.
T Consensus 109 ~~~~~~~~i~~A~~lG--a~~v~~~~ 132 (340)
T 2zds_A 109 AAAEIKDTARAAARLG--VDTVIGFT 132 (340)
T ss_dssp HHHHHHHHHHHHHHHT--CSEEEECC
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEec
Confidence 4577889999999988 88888874
No 42
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=49.34 E-value=46 Score=20.86 Aligned_cols=24 Identities=13% Similarity=-0.000 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 10 SHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 10 S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+...++.+++.|+..| ++.+++|.
T Consensus 81 ~~~~~~~~i~~a~~lG--~~~v~~~~ 104 (275)
T 3qc0_A 81 AIDDNRRAVDEAAELG--ADCLVLVA 104 (275)
T ss_dssp HHHHHHHHHHHHHHTT--CSCEEEEC
T ss_pred HHHHHHHHHHHHHHhC--CCEEEEee
Confidence 4567889999999987 88888874
No 43
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=47.50 E-value=55 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhcccCCCcEEEEEeeCCC
Q 033982 11 HYALMWVLDNLKESISKFPLIIFMAQPPT 39 (107)
Q Consensus 11 ~~Al~~A~~~a~~~g~~~~l~llhV~~~~ 39 (107)
..||..|++.+.+.+ .++..|++.++.
T Consensus 52 N~aL~~A~~~a~~~~--~~v~~vfi~dp~ 78 (482)
T 2xry_A 52 NWALLFSRAIAKEAN--VPVVVVFCLTDE 78 (482)
T ss_dssp CHHHHHHHHHHHHHT--SCEEEEEEECTT
T ss_pred cHHHHHHHHHHHHcC--CcEEEEEEeChh
Confidence 468888888776654 689999998764
No 44
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=45.46 E-value=56 Score=20.71 Aligned_cols=24 Identities=4% Similarity=-0.392 Sum_probs=18.1
Q ss_pred chHHHHHHHHHhhhcccCCCcEEEEE
Q 033982 9 QSHYALMWVLDNLKESISKFPLIIFM 34 (107)
Q Consensus 9 ~S~~Al~~A~~~a~~~g~~~~l~llh 34 (107)
.+...++.+++.|+..| ++.+.+|
T Consensus 81 ~~~~~~~~~i~~A~~lG--~~~v~~~ 104 (286)
T 3dx5_A 81 KTIEKCEQLAILANWFK--TNKIRTF 104 (286)
T ss_dssp HHHHHHHHHHHHHHHHT--CCEEEEC
T ss_pred HHHHHHHHHHHHHHHhC--CCEEEEc
Confidence 45567788888888887 7777665
No 45
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=44.98 E-value=17 Score=25.15 Aligned_cols=26 Identities=0% Similarity=-0.093 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+++..++|++.|+++. .+|+++|=
T Consensus 167 ~~~eRIar~AFe~A~~rr--kkVT~v~K 192 (361)
T 3udu_A 167 KEIERIARIAFESARIRK--KKVHLIDK 192 (361)
T ss_dssp HHHHHHHHHHHHHHHHTT--SEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CcEEEEEC
Confidence 356788888888887764 68998884
No 46
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=43.98 E-value=9.7 Score=20.30 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=14.1
Q ss_pred CeeecCC--cchHHHHHHHHHh
Q 033982 1 MVAIDES--EQSHYALMWVLDN 20 (107)
Q Consensus 1 lVavDgS--~~S~~Al~~A~~~ 20 (107)
||+.|-| +-+.+|+.||.+-
T Consensus 34 LV~L~~dePEvaa~AL~~A~ea 55 (90)
T 2dbs_A 34 LVLLPLDEPEVAAQALAWAMEA 55 (90)
T ss_dssp EEEEETTCHHHHHHHHHHHHSC
T ss_pred EEecCCCCHHHHHHHHHHHHhC
Confidence 3555555 5788899999764
No 47
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=43.32 E-value=20 Score=24.99 Aligned_cols=26 Identities=0% Similarity=-0.132 Sum_probs=20.2
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+++..++|++.|+++. .+|+++|=
T Consensus 179 ~~~eRIar~AFe~A~~rr--kkVT~v~K 204 (375)
T 3vmk_A 179 KEIRRIAKIAFESAQGRR--KKVTSVDK 204 (375)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CcEEEEEC
Confidence 357788888888888764 68888884
No 48
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=42.85 E-value=19 Score=25.18 Aligned_cols=27 Identities=0% Similarity=-0.144 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+.+++-.++|++.|++++ .+|+++|=.
T Consensus 183 ~~~eRiar~AFe~A~~r~--~kVt~v~Ka 209 (399)
T 1zor_A 183 KSIRSFAQSCINYAISEK--VDIWFATKD 209 (399)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCEEEEECT
T ss_pred HHHHHHHHHHHHHHHHhC--CeEEEEECc
Confidence 567888889999988765 578888843
No 49
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=42.68 E-value=20 Score=24.76 Aligned_cols=26 Identities=0% Similarity=-0.150 Sum_probs=20.2
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+++.+++|++.|+++. .+|+++|=
T Consensus 170 ~~~eRiar~AFe~A~~rr--kkVt~v~K 195 (363)
T 1cnz_A 170 FEIERIARIAFESARKRR--RKVTSIDK 195 (363)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcC--CeEEEEEC
Confidence 456788888888888764 67999884
No 50
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=42.44 E-value=20 Score=24.55 Aligned_cols=26 Identities=4% Similarity=-0.081 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+++-.++|.+.|+++. .+|+++|=
T Consensus 154 ~~~eRiar~AFe~A~~rr--kkVt~v~K 179 (337)
T 1w0d_A 154 FGVRRVVADAFERARRRR--KHLTLVHK 179 (337)
T ss_dssp HHHHHHHHHHHHHHHHTT--SEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CeEEEEEC
Confidence 356788888888888764 67999884
No 51
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=42.02 E-value=21 Score=24.99 Aligned_cols=26 Identities=4% Similarity=-0.161 Sum_probs=20.4
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+++..++|++.|+++. .+|+++|=
T Consensus 186 ~~~eRIar~AFe~A~~rr--kkVT~v~K 211 (390)
T 3u1h_A 186 EEIERIIRKAFELALTRK--KKVTSVDK 211 (390)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEEC
T ss_pred HHHhHHHHHHHHHHHHcC--CceEEEEC
Confidence 367788888999988764 68998884
No 52
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=41.71 E-value=66 Score=20.45 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=19.8
Q ss_pred chHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 9 QSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 9 ~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
.+...++.+++.|+..| ++.+++|.
T Consensus 101 ~~~~~~~~~i~~a~~lG--a~~v~~~~ 125 (287)
T 3kws_A 101 ECMDTMKEIIAAAGELG--STGVIIVP 125 (287)
T ss_dssp HHHHHHHHHHHHHHHTT--CSEEEECS
T ss_pred HHHHHHHHHHHHHHHcC--CCEEEEec
Confidence 34567888999999987 88887773
No 53
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=40.74 E-value=23 Score=24.23 Aligned_cols=27 Identities=7% Similarity=-0.251 Sum_probs=20.6
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+.+++-.++|.+.|+++. .+|+++|=.
T Consensus 144 ~~~eRiar~AF~~A~~rr--kkvt~v~Ka 170 (336)
T 1wpw_A 144 FASERIAKVGLNFALRRR--KKVTCVHKA 170 (336)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHhC--CeEEEEECC
Confidence 457788888888888764 679998843
No 54
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=40.19 E-value=24 Score=24.51 Aligned_cols=26 Identities=4% Similarity=-0.175 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+++.+++|++.|+++. .+|+++|=
T Consensus 174 ~~~eRIar~AFe~A~~rr--kkVt~v~K 199 (366)
T 1vlc_A 174 KTVERIARTAFEIAKNRR--KKVTSVDK 199 (366)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CeEEEEEC
Confidence 467888889999988764 67999884
No 55
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=39.52 E-value=24 Score=24.31 Aligned_cols=26 Identities=4% Similarity=-0.148 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+++..++|++.|+++. .+|+++|=
T Consensus 165 ~~~eRiar~AFe~A~~rr--kkVt~v~K 190 (358)
T 1a05_A 165 DEIRRIAHVAFRAAQGRR--KQLCSVDK 190 (358)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcC--CeEEEEEC
Confidence 356788888888887754 67999884
No 56
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=39.52 E-value=26 Score=18.59 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+..+|+..++.|...| -..+.|+|=
T Consensus 15 ~eA~~~l~~fl~~a~~~g-~~~v~IIHG 41 (83)
T 2zqe_A 15 AEALLEVDQALEEARALG-LSTLRLLHG 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHTT-CSEEEEECC
T ss_pred HHHHHHHHHHHHHHHHCC-CCEEEEEEC
Confidence 578889999999998765 357888873
No 57
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=39.42 E-value=29 Score=20.99 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=24.9
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
++++..|-.+...++ +++.|++.| ++++.+.-.
T Consensus 117 vI~iS~SG~t~~~i~-~~~~ak~~g--~~vI~IT~~ 149 (199)
T 1x92_A 117 LLAISTSGNSANVIQ-AIQAAHDRE--MLVVALTGR 149 (199)
T ss_dssp EEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEECT
T ss_pred EEEEeCCCCCHHHHH-HHHHHHHCC--CEEEEEECC
Confidence 467888888888876 557888876 888777653
No 58
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=38.91 E-value=25 Score=24.27 Aligned_cols=26 Identities=0% Similarity=-0.082 Sum_probs=20.3
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+++..++|++.|+++. .+|+++|=
T Consensus 163 ~~~eRIar~AFe~A~~rr--kkVt~v~K 188 (359)
T 2y3z_A 163 PEVERVARVAFEAARKRR--KHVVSVDK 188 (359)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CeEEEEEC
Confidence 456788888999988764 67999884
No 59
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=38.70 E-value=46 Score=19.76 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEE-EEEeecCCC
Q 033982 72 QRKLTLAFLQKVKDILSSQGVKAE-MIVEVWDPT 104 (107)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~v~~~-~~v~~Gdp~ 104 (107)
.++.+++.|+.....++..|+.++ ..+..++|-
T Consensus 52 a~~~A~~~l~~sl~aL~~~G~~a~~G~v~d~~Pl 85 (138)
T 2iel_A 52 VRRRAEEEAAAAKRALEAQGIPVEEAKAGDISPL 85 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCSEEEEEESSHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccCCCChH
Confidence 345566677777777788999998 888888874
No 60
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=38.37 E-value=85 Score=20.75 Aligned_cols=35 Identities=9% Similarity=-0.064 Sum_probs=24.2
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCc-EEEEEeeC
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFP-LIIFMAQP 37 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~-l~llhV~~ 37 (107)
+|++-|=..|...+..+.+.....| .+ +.++||-.
T Consensus 28 lva~SGG~DS~~Ll~ll~~~~~~~g--~~~v~av~vd~ 63 (317)
T 1wy5_A 28 LIAFSGGVDSVVLTDVLLKLKNYFS--LKEVALAHFNH 63 (317)
T ss_dssp EEECCSSHHHHHHHHHHHHSTTTTT--CSEEEEEEEEC
T ss_pred EEEecchHHHHHHHHHHHHHHHHcC--CCEEEEEEEEC
Confidence 3666676777777777766655444 67 99999853
No 61
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=38.22 E-value=72 Score=19.91 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhhhcccCCCcEEEEE
Q 033982 10 SHYALMWVLDNLKESISKFPLIIFM 34 (107)
Q Consensus 10 S~~Al~~A~~~a~~~g~~~~l~llh 34 (107)
+...++.+++.|+..| ++.+++|
T Consensus 82 ~~~~~~~~i~~a~~lG--~~~v~~~ 104 (278)
T 1i60_A 82 IITEFKGMMETCKTLG--VKYVVAV 104 (278)
T ss_dssp HHHHHHHHHHHHHHHT--CCEEEEE
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEe
Confidence 4667888999999987 7877775
No 62
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=37.30 E-value=29 Score=23.72 Aligned_cols=28 Identities=14% Similarity=-0.119 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+.+++..++|.+.|++++ ..+|+++|=.
T Consensus 144 ~~~eRiar~AF~~A~~r~-rkkvt~v~Ka 171 (333)
T 1x0l_A 144 KASERIGRAALRIAEGRP-RKTLHIAHKA 171 (333)
T ss_dssp HHHHHHHHHHHHHHHTST-TCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEecC
Confidence 457888899999998863 2579998843
No 63
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=37.22 E-value=27 Score=24.19 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+++..++|++.|++++ ..+|+++|=
T Consensus 166 ~~~eRIar~AFe~A~~r~-~kkVt~v~K 192 (364)
T 3flk_A 166 RGVDRILKYAFDLAEKRE-RKHVTSATK 192 (364)
T ss_dssp HHHHHHHHHHHHHHHHSS-SCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEEC
Confidence 467788889999998865 236999984
No 64
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=36.08 E-value=30 Score=24.38 Aligned_cols=26 Identities=4% Similarity=-0.125 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+.+++..++|++.|+++. .+|+++|=
T Consensus 207 ~~~eRIar~AFe~A~~rr--kkVT~v~K 232 (405)
T 3r8w_A 207 HEIDRIARVAFETARKRR--GKLCSVDK 232 (405)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CeEEEEEC
Confidence 356788888888887654 68888883
No 65
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=35.86 E-value=32 Score=23.68 Aligned_cols=28 Identities=7% Similarity=0.021 Sum_probs=20.9
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+.+++-.++|++.|++++ ..+|+++|=.
T Consensus 157 ~~~eRiar~AF~~A~~r~-rkkVt~v~Ka 184 (349)
T 3blx_A 157 PKTERIARFAFDFAKKYN-RKSVTAVHKA 184 (349)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHhcC-CCcEEEEeCC
Confidence 456788889999988764 2579988843
No 66
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=35.72 E-value=10 Score=20.27 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=23.2
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeCC
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQPP 38 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~ 38 (107)
||.-||....-.-++-|+.+|... .|.||-|.+.
T Consensus 18 li~~~Ge~lGv~~~~eAl~~A~e~----~LDLVevsp~ 51 (78)
T 1tif_A 18 LIDQNGDQLGIKSKQEALEIAARR----NLDLVLVAPN 51 (78)
T ss_dssp EECTTSCEEEEEEHHHHHHHHHHT----TCEEEEEETT
T ss_pred EECCCCcCCCcccHHHHHHHHHHc----CCCEEEECCC
Confidence 345566666666677888888874 4777777654
No 67
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=34.11 E-value=32 Score=23.70 Aligned_cols=28 Identities=7% Similarity=0.153 Sum_probs=20.9
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+.+++-.++|++.|++++ ..+|+++|=.
T Consensus 163 ~~~eRiar~AFe~A~~r~-rkkVt~v~Ka 190 (354)
T 3blx_B 163 DASERVIRYAFEYARAIG-RPRVIVVHKS 190 (354)
T ss_dssp HHHHHHHHHHHHHHHHTT-CSEEEEEESC
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEECC
Confidence 456788888999988763 2579999843
No 68
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=33.08 E-value=36 Score=24.12 Aligned_cols=28 Identities=4% Similarity=-0.019 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+.+++..++|++.|++++ ..+|+++|=.
T Consensus 214 ~~~eRIar~AFe~A~~r~-rkkVT~V~Ka 241 (427)
T 3dms_A 214 EGTERLVRKAIQYAIDND-RKSVTLVHKG 241 (427)
T ss_dssp HHHHHHHHHHHHHHHHTT-CSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEECC
Confidence 357788889999997763 2579998843
No 69
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=32.97 E-value=1e+02 Score=20.01 Aligned_cols=25 Identities=4% Similarity=-0.254 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEE
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFM 34 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llh 34 (107)
+.+...++.+++.|+..| ++.++++
T Consensus 104 ~~~~~~~~~~i~~A~~lG--~~~v~~~ 128 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLG--CKYLIQP 128 (303)
T ss_dssp HHHHHHHHHHHHHHHHTT--CSEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CCEEEEC
Confidence 455778999999999988 8877665
No 70
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=32.35 E-value=45 Score=19.83 Aligned_cols=33 Identities=6% Similarity=-0.062 Sum_probs=24.1
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
++++..|..+...++ +++.|++.| ++++.+.-.
T Consensus 83 vI~iS~sG~t~~~~~-~~~~ak~~g--~~vi~IT~~ 115 (186)
T 1m3s_A 83 VIIGSGSGETKSLIH-TAAKAKSLH--GIVAALTIN 115 (186)
T ss_dssp EEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEESC
T ss_pred EEEEcCCCCcHHHHH-HHHHHHHCC--CEEEEEECC
Confidence 467888888877665 557788876 888877754
No 71
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=31.43 E-value=36 Score=23.57 Aligned_cols=27 Identities=19% Similarity=-0.009 Sum_probs=18.5
Q ss_pred cchHHHHHHHHHhhhcc------------cCCCcEEEEEe
Q 033982 8 EQSHYALMWVLDNLKES------------ISKFPLIIFMA 35 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~------------g~~~~l~llhV 35 (107)
+.+++..++|.+.|+++ + ..+|+++|=
T Consensus 162 ~~~eRIar~AFe~A~~r~~~~~~~~~~~~~-rkkVt~v~K 200 (366)
T 3ty4_A 162 EASTKIGKMAFEIAKSRQKIRESGTYSIHK-KPLVTIIHK 200 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSCS-SCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCccccccccccCC-CCeEEEEEC
Confidence 35667777777777765 2 257888884
No 72
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=31.40 E-value=1e+02 Score=21.16 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeecCCC
Q 033982 73 RKLTLAFLQKVKDILSSQGVKAEMIVEVWDPT 104 (107)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~v~~~~~v~~Gdp~ 104 (107)
.+..+++++.+.++.+.-|+++..+.. |||.
T Consensus 207 ~~e~e~l~~~ae~il~~LgLpyrv~~~-~D~~ 237 (346)
T 3mf2_A 207 SDFRERWMVRAQAIARDLGLTFRVDYA-SDPF 237 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEC-CCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEc-cCCC
Confidence 344567777777887878998887765 7775
No 73
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=31.28 E-value=40 Score=23.91 Aligned_cols=29 Identities=14% Similarity=-0.012 Sum_probs=21.9
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEeeC
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQP 37 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~~ 37 (107)
+.+++-+++|++.|.+++ ..+|+++|=.+
T Consensus 204 ~~~eRIar~AFe~A~~r~-rkkVT~v~KaN 232 (429)
T 2d4v_A 204 EGSERLIRRTIQYALEHG-KPSVSLVHKGN 232 (429)
T ss_dssp HHHHHHHHHHHHHHHHTT-CSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEECCc
Confidence 457888999999998764 24699999543
No 74
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=30.60 E-value=43 Score=23.57 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEeeC
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQP 37 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~~ 37 (107)
+.+++-+++|++.|.+++ ..+|+++|=.+
T Consensus 197 ~~~eRiar~AFe~A~~r~-rkkVt~v~KaN 225 (409)
T 2e0c_A 197 YKTQRITRLAIQYAIEHK-RKKVTIMHKGN 225 (409)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcC-CCcEEEEECcc
Confidence 357888899999997764 24699998543
No 75
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=30.60 E-value=50 Score=19.83 Aligned_cols=33 Identities=9% Similarity=0.154 Sum_probs=24.2
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
++++..|-.+...++ +++.|++.| ++++.+.-.
T Consensus 113 vI~iS~SG~t~~~i~-~~~~ak~~g--~~vI~IT~~ 145 (196)
T 2yva_A 113 LLAISTRGNSRDIVK-AVEAAVTRD--MTIVALTGY 145 (196)
T ss_dssp EEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEECT
T ss_pred EEEEeCCCCCHHHHH-HHHHHHHCC--CEEEEEeCC
Confidence 467888888888776 446788876 787777654
No 76
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=30.51 E-value=42 Score=23.65 Aligned_cols=28 Identities=4% Similarity=-0.058 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+.+++-+++|++.|.+++ ..+|+++|=.
T Consensus 197 ~~~eRiar~AFe~A~~r~-rkkVt~v~Ka 224 (412)
T 2iv0_A 197 FATKRLVRMAIRYAIENN-RKSVTLVHKG 224 (412)
T ss_dssp HHHHHHHHHHHHHHHHTT-CSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHhcC-CCcEEEEECc
Confidence 357888999999997764 2469999843
No 77
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=29.86 E-value=1.2e+02 Score=19.76 Aligned_cols=24 Identities=8% Similarity=-0.226 Sum_probs=17.3
Q ss_pred chHHHHHHHHHhhhcccCCCcEEEEE
Q 033982 9 QSHYALMWVLDNLKESISKFPLIIFM 34 (107)
Q Consensus 9 ~S~~Al~~A~~~a~~~g~~~~l~llh 34 (107)
.+...++.+++.|+..| ++.++++
T Consensus 111 ~~~~~~~~~i~~A~~lG--~~~v~~~ 134 (305)
T 3obe_A 111 KFDEFWKKATDIHAELG--VSCMVQP 134 (305)
T ss_dssp HHHHHHHHHHHHHHHHT--CSEEEEC
T ss_pred HHHHHHHHHHHHHHHcC--CCEEEeC
Confidence 34567888888888887 7766653
No 78
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=29.60 E-value=9.8 Score=22.12 Aligned_cols=30 Identities=7% Similarity=-0.165 Sum_probs=24.7
Q ss_pred CCcchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 6 ESEQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 6 gS~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+|+.+..||..|.+.|.+.| +..|..-|..
T Consensus 6 ~t~~~~~al~~A~~~A~~~~-h~~i~~eHlL 35 (150)
T 2y1q_A 6 FTERAQKVLALAQEEALRLG-HNNIGTEHIL 35 (150)
T ss_dssp BCHHHHHHHHHHHHHHHHTT-CSEECHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHcC-CCCccHHHHH
Confidence 57899999999999999986 4667666663
No 79
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=29.44 E-value=43 Score=23.80 Aligned_cols=28 Identities=7% Similarity=-0.059 Sum_probs=20.7
Q ss_pred chHHHHHHHHHhhhcccCCCcEEEEEeeC
Q 033982 9 QSHYALMWVLDNLKESISKFPLIIFMAQP 37 (107)
Q Consensus 9 ~S~~Al~~A~~~a~~~g~~~~l~llhV~~ 37 (107)
.+++-+++|++.|.+++ ..+|+++|=.+
T Consensus 208 ~~eRIar~AFe~A~~r~-rkkVT~v~KaN 235 (435)
T 1tyo_A 208 ATRRLMERALEWALRNG-NTVVTIMHKGN 235 (435)
T ss_dssp HHHHHHHHHHHHHHHHT-CCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHhcC-CCcEEEEECCc
Confidence 47788888888887763 25799998433
No 80
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=29.23 E-value=42 Score=23.71 Aligned_cols=27 Identities=7% Similarity=-0.037 Sum_probs=20.4
Q ss_pred chHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 9 QSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 9 ~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
.+++-+++|++.|.+++ ..+|+++|=.
T Consensus 196 ~~eRiar~AFe~A~~r~-rkkVt~v~Ka 222 (423)
T 1hqs_A 196 GTSRLVRAAIDYAIEHG-RKSVTLVHKG 222 (423)
T ss_dssp HHHHHHHHHHHHHHHHT-CSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHcC-CCcEEEEECC
Confidence 47788888888888763 2579999943
No 81
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=29.19 E-value=54 Score=21.40 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=22.8
Q ss_pred CcchHHHHHHHHHhhhcccCCC--cEEEEEeeC
Q 033982 7 SEQSHYALMWVLDNLKESISKF--PLIIFMAQP 37 (107)
Q Consensus 7 S~~S~~Al~~A~~~a~~~g~~~--~l~llhV~~ 37 (107)
++.+..|++.|..+..+.| . +++++.+=+
T Consensus 36 np~d~~ale~A~~Lke~~g--~~~~V~av~~G~ 66 (264)
T 1o97_C 36 NEWDDFSLEEAMKIKESSD--TDVEVVVVSVGP 66 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCS--SCCEEEEEEESC
T ss_pred CHHHHHHHHHHHHHHHhcC--CCceEEEEEeCc
Confidence 5678999999999977655 5 888887753
No 82
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=28.19 E-value=8.7 Score=22.15 Aligned_cols=30 Identities=7% Similarity=-0.036 Sum_probs=24.0
Q ss_pred CCcchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 6 ESEQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 6 gS~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+|+.+.++|..|.+.|++.| +..|..-|..
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~-~~~i~~eHlL 31 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHR-HEFMTVEHLL 31 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHT-BSEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcC-CCCcCHHHHH
Confidence 57889999999999999986 4566666653
No 83
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=27.87 E-value=74 Score=19.96 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=26.7
Q ss_pred CeeecCCcc-------hHHHHHHHHHhhhcccCCC-cEEEEEeeC
Q 033982 1 MVAIDESEQ-------SHYALMWVLDNLKESISKF-PLIIFMAQP 37 (107)
Q Consensus 1 lVavDgS~~-------S~~Al~~A~~~a~~~g~~~-~l~llhV~~ 37 (107)
++.|+||.. |.+.+++.++.++..+.+. ++.++....
T Consensus 7 IL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~ 51 (223)
T 3u7i_A 7 TLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYD 51 (223)
T ss_dssp EEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTT
T ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcC
Confidence 357888865 6778888888887653346 788888764
No 84
>2auh_B Growth factor receptor-bound protein 14; tyrosine kinase, BPS region, transferase/signaling protein complex; HET: PTR; 3.20A {Homo sapiens}
Probab=27.74 E-value=21 Score=17.92 Aligned_cols=6 Identities=67% Similarity=0.628 Sum_probs=2.5
Q ss_pred eeecCC
Q 033982 2 VAIDES 7 (107)
Q Consensus 2 VavDgS 7 (107)
||.|+|
T Consensus 17 VAMDFs 22 (59)
T 2auh_B 17 VAMDFS 22 (59)
T ss_dssp EEEECS
T ss_pred EEEeec
Confidence 344443
No 85
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=27.36 E-value=11 Score=21.93 Aligned_cols=29 Identities=7% Similarity=-0.140 Sum_probs=23.7
Q ss_pred CCcchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 6 ESEQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 6 gS~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+|+.+.++|..|.+.|++.+ +..|..-|.
T Consensus 8 ~T~~a~~~l~~A~~~A~~~~-~~~i~~eHL 36 (145)
T 3fes_A 8 FTQRAKKAIDLAFESAKSLG-HNIVGSEHI 36 (145)
T ss_dssp BCHHHHHHHHHHHHHHHHTT-CSEECHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcC-CCCccHHHH
Confidence 57889999999999999986 456666665
No 86
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=26.63 E-value=72 Score=19.69 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=27.5
Q ss_pred CeeecCCcc------hHHHHHHHHHhhhcccCCCcEEEEEeeC
Q 033982 1 MVAIDESEQ------SHYALMWVLDNLKESISKFPLIIFMAQP 37 (107)
Q Consensus 1 lVavDgS~~------S~~Al~~A~~~a~~~g~~~~l~llhV~~ 37 (107)
++.|+||.. +.+.+++.++.++..+.+.++.++....
T Consensus 7 iLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~ 49 (211)
T 3p0r_A 7 VLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYK 49 (211)
T ss_dssp EEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGG
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 357888876 7788888888887652247898888764
No 87
>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A
Probab=26.57 E-value=1.7e+02 Score=20.58 Aligned_cols=24 Identities=21% Similarity=-0.042 Sum_probs=19.5
Q ss_pred chHHHHHHHHHhhhcccCCCcEEEEE
Q 033982 9 QSHYALMWVLDNLKESISKFPLIIFM 34 (107)
Q Consensus 9 ~S~~Al~~A~~~a~~~g~~~~l~llh 34 (107)
.+...++.+++.|+..| ++.+++|
T Consensus 164 ~ai~~lk~aId~A~~LG--a~~vv~~ 187 (438)
T 1a0c_A 164 YSAAQVKKALEITKELG--GENYVFW 187 (438)
T ss_dssp HHHHHHHHHHHHHHHTT--CSEEEEC
T ss_pred HHHHHHHHHHHHHHHcC--CCEEEEc
Confidence 45678999999999988 8876666
No 88
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=25.46 E-value=12 Score=21.70 Aligned_cols=29 Identities=7% Similarity=-0.235 Sum_probs=23.8
Q ss_pred CCcchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 6 ESEQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 6 gS~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+|+.+..+|..|...|++.| +..|..-|.
T Consensus 6 ~t~~~~~~l~~A~~~A~~~~-~~~i~~eHl 34 (148)
T 1khy_A 6 LTNKFQLALADAQSLALGHD-NQFIEPLHL 34 (148)
T ss_dssp BCHHHHHHHHHHHHHHHHTT-CSSBCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcC-CCccCHHHH
Confidence 57889999999999999986 466666665
No 89
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=24.98 E-value=90 Score=16.90 Aligned_cols=27 Identities=11% Similarity=0.012 Sum_probs=19.8
Q ss_pred chHHHHHHHHHhhhcccCCCcEEEEEeeC
Q 033982 9 QSHYALMWVLDNLKESISKFPLIIFMAQP 37 (107)
Q Consensus 9 ~S~~Al~~A~~~a~~~g~~~~l~llhV~~ 37 (107)
.|..=|+.|+.+....+ ..-..+||.+
T Consensus 62 sSd~EL~eAl~l~~~n~--~~~l~ihvf~ 88 (89)
T 1vd2_A 62 SSQLELEEAFRLYELNK--DSELLIHVFP 88 (89)
T ss_dssp CSHHHHHHHHHHHHHTS--CCCEEEEEEE
T ss_pred cCHHHHHHHHHHHHccC--CCCEEEEEcc
Confidence 56777888998888754 5566678864
No 90
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=24.73 E-value=50 Score=20.81 Aligned_cols=24 Identities=13% Similarity=-0.040 Sum_probs=20.0
Q ss_pred chHHHHHHHHHhhhcccCCCcEEEEE
Q 033982 9 QSHYALMWVLDNLKESISKFPLIIFM 34 (107)
Q Consensus 9 ~S~~Al~~A~~~a~~~g~~~~l~llh 34 (107)
.+...++.+++.|...| ++.+++|
T Consensus 85 ~~~~~~~~~i~~a~~lG--a~~vv~h 108 (270)
T 3aam_A 85 KSVASLADDLEKAALLG--VEYVVVH 108 (270)
T ss_dssp HHHHHHHHHHHHHHHHT--CCEEEEC
T ss_pred HHHHHHHHHHHHHHHcC--CCEEEEC
Confidence 46778899999999988 8888777
No 91
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=24.44 E-value=68 Score=19.67 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=24.0
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+|++..|..+...++ +++.|++.| ++++.+.-.
T Consensus 135 vI~iS~SG~t~~~i~-~~~~ak~~G--~~vIaIT~~ 167 (212)
T 2i2w_A 135 LLGISTSGNSANVIK-AIAAAREKG--MKVITLTGK 167 (212)
T ss_dssp EEEECSSSCCHHHHH-HHHHHHHHT--CEEEEEEET
T ss_pred EEEEECCCCCHHHHH-HHHHHHHCC--CeEEEEECC
Confidence 467788888877665 556788877 888888764
No 92
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=24.40 E-value=82 Score=20.67 Aligned_cols=30 Identities=13% Similarity=0.372 Sum_probs=19.3
Q ss_pred eeecCCcchHHHHHHHHHhhhcccCCCcEEEEE
Q 033982 2 VAIDESEQSHYALMWVLDNLKESISKFPLIIFM 34 (107)
Q Consensus 2 VavDgS~~S~~Al~~A~~~a~~~g~~~~l~llh 34 (107)
+++|-|+ .|++++.++++..|-...+.+++
T Consensus 152 ~avD~np---~a~~~~~~N~~~N~v~~~v~~~~ 181 (278)
T 3k6r_A 152 IAIEKDP---YTFKFLVENIHLNKVEDRMSAYN 181 (278)
T ss_dssp EEECCCH---HHHHHHHHHHHHTTCTTTEEEEC
T ss_pred EEEECCH---HHHHHHHHHHHHcCCCCcEEEEe
Confidence 5677664 56777777777755445566655
No 93
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=24.34 E-value=12 Score=21.73 Aligned_cols=29 Identities=0% Similarity=-0.132 Sum_probs=23.7
Q ss_pred CCcchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 6 ESEQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 6 gS~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
+|+.+.++|..|.+.|++.+ +..|..-|.
T Consensus 7 ~t~~~~~~l~~A~~~A~~~~-~~~i~~eHL 35 (146)
T 3fh2_A 7 FTDRARRVIVLAQEEARMLN-HNYIGTEHI 35 (146)
T ss_dssp BCHHHHHHHHHHHHHHHHTT-CSSBCHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcC-CCCchHHHH
Confidence 68899999999999999986 456666665
No 94
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=24.32 E-value=48 Score=14.27 Aligned_cols=7 Identities=0% Similarity=0.302 Sum_probs=3.3
Q ss_pred HhcCCcE
Q 033982 88 SSQGVKA 94 (107)
Q Consensus 88 ~~~~v~~ 94 (107)
++.+|.+
T Consensus 25 kkanirv 31 (36)
T 2ki0_A 25 KKANIRV 31 (36)
T ss_dssp HHHCCCC
T ss_pred HhccEEE
Confidence 3445554
No 95
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=24.26 E-value=60 Score=23.52 Aligned_cols=28 Identities=4% Similarity=-0.035 Sum_probs=21.4
Q ss_pred cchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 8 EQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 8 ~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+.+++-+++|.+.|++++ ..+|+++|=.
T Consensus 165 ~~ieRIar~AFe~A~~r~-rkkVT~V~Ka 192 (496)
T 2d1c_A 165 KGSEKIVRFAFELARAEG-RKKVHCATKS 192 (496)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHhcC-CCcEEEEECC
Confidence 567888899999998763 2579988843
No 96
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=24.00 E-value=70 Score=20.08 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=24.8
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+|++..|-.+...++.+ +.|++.| ++++.+.-.
T Consensus 112 ~I~iS~SG~t~~~i~~~-~~Ak~~G--~~vI~IT~~ 144 (243)
T 3cvj_A 112 IMIISNSGRNTVPVEMA-IESRNIG--AKVIAMTSM 144 (243)
T ss_dssp EEEECSSCCSHHHHHHH-HHHHHHT--CEEEEEECH
T ss_pred EEEEeCCCCCHHHHHHH-HHHHHCC--CEEEEEeCC
Confidence 46788888888877644 6788877 888888765
No 97
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=23.93 E-value=48 Score=17.75 Aligned_cols=6 Identities=0% Similarity=0.163 Sum_probs=2.4
Q ss_pred cCCcEE
Q 033982 90 QGVKAE 95 (107)
Q Consensus 90 ~~v~~~ 95 (107)
.||+++
T Consensus 27 ~gi~y~ 32 (92)
T 2lqo_A 27 NRIAYD 32 (92)
T ss_dssp TTCCCE
T ss_pred cCCceE
Confidence 344433
No 98
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=22.66 E-value=88 Score=18.57 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhhhcccCCCcEEEEE
Q 033982 10 SHYALMWVLDNLKESISKFPLIIFM 34 (107)
Q Consensus 10 S~~Al~~A~~~a~~~g~~~~l~llh 34 (107)
...+.-|++++|+..| ..+|.+|-
T Consensus 53 tld~A~wgAELA~Geg-~~RIYiVE 76 (143)
T 2hw2_A 53 TLDAAVWGAELAAGEG-RGRIFIVE 76 (143)
T ss_dssp BHHHHHHHHHHSCSSS-CCEEEEEE
T ss_pred ccchhHHHHHHhcCCC-CCeEEEEc
Confidence 3567889999999876 35565554
No 99
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=22.59 E-value=57 Score=21.04 Aligned_cols=25 Identities=4% Similarity=-0.126 Sum_probs=20.5
Q ss_pred chHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 9 QSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 9 ~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
.+...++.+++.|+..| ++.+++|.
T Consensus 91 ~~~~~~~~~i~~A~~lG--a~~vv~h~ 115 (303)
T 3aal_A 91 LGVDFLRAEIERTEAIG--AKQLVLHP 115 (303)
T ss_dssp HHHHHHHHHHHHHHHHT--CSEEEECC
T ss_pred HHHHHHHHHHHHHHHcC--CCEEEECC
Confidence 45778889999999988 88888874
No 100
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=22.41 E-value=69 Score=21.13 Aligned_cols=35 Identities=17% Similarity=-0.083 Sum_probs=27.3
Q ss_pred CeeecCCc----chHHHHHHHHHhhhcccCCCcEEEEEeeC
Q 033982 1 MVAIDESE----QSHYALMWVLDNLKESISKFPLIIFMAQP 37 (107)
Q Consensus 1 lVavDgS~----~S~~Al~~A~~~a~~~g~~~~l~llhV~~ 37 (107)
++.|-||. ++...++|+++.++..| .++.++.+..
T Consensus 61 ILiI~GS~R~~S~T~~La~~~~~~l~~~G--~eveiidL~d 99 (279)
T 2fzv_A 61 ILLLYGSLRARSFSRLAVEEAARLLQFFG--AETRIFDPSD 99 (279)
T ss_dssp EEEEESCCSSSCHHHHHHHHHHHHHHHTT--CEEEEBCCTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhhCC--CEEEEEehhc
Confidence 36778886 47889999999888755 8888888754
No 101
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=22.19 E-value=89 Score=18.44 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=23.8
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEeeC
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQP 37 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~~ 37 (107)
++++..|..+...++ +++.|++.| ++++.+.-.+
T Consensus 114 vi~iS~sG~t~~~~~-~~~~ak~~g--~~vi~iT~~~ 147 (188)
T 1tk9_A 114 LIGISTSGKSPNVLE-ALKKAKELN--MLCLGLSGKG 147 (188)
T ss_dssp EEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEEEGG
T ss_pred EEEEeCCCCCHHHHH-HHHHHHHCC--CEEEEEeCCC
Confidence 467778877877664 456778866 8888887643
No 102
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=21.97 E-value=94 Score=18.24 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=23.7
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
++++..|..+...++ +++.|++.| ++++.+.-.
T Consensus 86 vi~iS~sG~t~~~~~-~~~~ak~~g--~~vi~IT~~ 118 (180)
T 1jeo_A 86 LILISGSGRTESVLT-VAKKAKNIN--NNIIAIVCE 118 (180)
T ss_dssp EEEEESSSCCHHHHH-HHHHHHTTC--SCEEEEESS
T ss_pred EEEEeCCCCcHHHHH-HHHHHHHCC--CcEEEEeCC
Confidence 467778888877665 446788866 888888764
No 103
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=21.93 E-value=92 Score=20.12 Aligned_cols=28 Identities=7% Similarity=-0.124 Sum_probs=21.9
Q ss_pred CcchHHHHHHHHHhhhcccCCC--cEEEEEeeC
Q 033982 7 SEQSHYALMWVLDNLKESISKF--PLIIFMAQP 37 (107)
Q Consensus 7 S~~S~~Al~~A~~~a~~~g~~~--~l~llhV~~ 37 (107)
++.+..|++.|..+..+ | . +++++.+=+
T Consensus 36 np~d~~Ale~A~~Lke~-g--~~~~V~av~~G~ 65 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-G--QAEEIIAVSIGV 65 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-T--SCSEEEEEEEES
T ss_pred CHHHHHHHHHHHHHHhc-C--CCceEEEEEeCC
Confidence 46789999999998765 4 4 888887754
No 104
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=21.82 E-value=90 Score=18.59 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=23.4
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
++++-.|..+...++ +++.|++.| ++++.+.-.
T Consensus 120 vI~iS~SG~t~~~~~-~~~~ak~~g--~~vI~IT~~ 152 (198)
T 2xbl_A 120 LIGYSTSGKSPNILA-AFREAKAKG--MTCVGFTGN 152 (198)
T ss_dssp EEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEECS
T ss_pred EEEEeCCCCCHHHHH-HHHHHHHCC--CeEEEEECC
Confidence 467778888877664 556788866 788777754
No 105
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=21.65 E-value=1e+02 Score=18.05 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=23.4
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
++++-.|-.+...++. ++.|++.| ++++.+.-.
T Consensus 100 vI~iS~sG~t~~~~~~-~~~ak~~g--~~vi~IT~~ 132 (183)
T 2xhz_A 100 VIAISNSGESSEITAL-IPVLKRLH--VPLICITGR 132 (183)
T ss_dssp EEEECSSSCCHHHHHH-HHHHHTTT--CCEEEEESC
T ss_pred EEEEeCCCCCHHHHHH-HHHHHHCC--CCEEEEECC
Confidence 4677778777776644 46778766 888888764
No 106
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=21.07 E-value=77 Score=20.34 Aligned_cols=35 Identities=11% Similarity=-0.130 Sum_probs=26.6
Q ss_pred CeeecCCc----chHHHHHHHHHhhhcccCCCcEEEEEeeC
Q 033982 1 MVAIDESE----QSHYALMWVLDNLKESISKFPLIIFMAQP 37 (107)
Q Consensus 1 lVavDgS~----~S~~Al~~A~~~a~~~g~~~~l~llhV~~ 37 (107)
++.|-||. ++.+.++++++.+...| .++.++.+..
T Consensus 37 IliI~GS~r~~s~t~~La~~~~~~l~~~g--~eve~idL~~ 75 (247)
T 2q62_A 37 ILILYGSLRTVSYSRLLAEEARRLLEFFG--AEVKVFDPSG 75 (247)
T ss_dssp EEEEECCCCSSCHHHHHHHHHHHHHHHTT--CEEEECCCTT
T ss_pred EEEEEccCCCCCHHHHHHHHHHHHHhhCC--CEEEEEEhhc
Confidence 36788886 47788899998887655 7888888754
No 107
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=20.88 E-value=99 Score=20.05 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=22.2
Q ss_pred CcchHHHHHHHHHhhhcccCCC--cEEEEEeeC
Q 033982 7 SEQSHYALMWVLDNLKESISKF--PLIIFMAQP 37 (107)
Q Consensus 7 S~~S~~Al~~A~~~a~~~g~~~--~l~llhV~~ 37 (107)
++.+..|++.|..+..+ | . +++++.+=+
T Consensus 39 np~d~~Ale~A~~Lke~-g--~~~~V~av~~G~ 68 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-K--LVKEVIAVSCGP 68 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-T--SCSEEEEEEEES
T ss_pred CHHHHHHHHHHHHHHhc-C--CCceEEEEEeCC
Confidence 46789999999998765 5 4 888888764
No 108
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=20.60 E-value=45 Score=20.19 Aligned_cols=30 Identities=17% Similarity=-0.098 Sum_probs=24.4
Q ss_pred CCcchHHHHHHHHHhhhcccCCCcEEEEEee
Q 033982 6 ESEQSHYALMWVLDNLKESISKFPLIIFMAQ 36 (107)
Q Consensus 6 gS~~S~~Al~~A~~~a~~~g~~~~l~llhV~ 36 (107)
+|+.+++||..|.+.|++.| +..|..-|..
T Consensus 25 fT~~a~~aL~~A~~~A~~~~-h~~I~~EHLL 54 (171)
T 3zri_A 25 LNAQSKLALEQAASLCIERQ-HPEVTLEHYL 54 (171)
T ss_dssp BCHHHHHHHHHHHHHHHHHT-CSEECHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcC-CCcccHHHHH
Confidence 58899999999999999987 4666666663
No 109
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=20.56 E-value=1.1e+02 Score=19.78 Aligned_cols=26 Identities=12% Similarity=-0.086 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhcccCCCcEEEEEeeCC
Q 033982 11 HYALMWVLDNLKESISKFPLIIFMAQPP 38 (107)
Q Consensus 11 ~~Al~~A~~~a~~~g~~~~l~llhV~~~ 38 (107)
++-|+.+..+|++.| .-|.|-|..+.
T Consensus 171 ~~ql~~a~~~A~~~G--~aIaIGhp~p~ 196 (245)
T 2nly_A 171 IKNMRKLAKKAKQGS--EPIGIGHVGVR 196 (245)
T ss_dssp HHHHHHHHHHHHTTS--CCEEEEECSTT
T ss_pred HHHHHHHHHHHhhcC--cEEEEECCCCC
Confidence 456778888999877 78999997653
No 110
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=20.43 E-value=1.1e+02 Score=19.55 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=18.1
Q ss_pred eeecCCcchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 2 VAIDESEQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 2 VavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
++||.|+ ..++.|-+.+...+....+.+++.
T Consensus 100 ~gvD~s~---~ml~~A~~~~~~~~~~~~v~~~~~ 130 (261)
T 4gek_A 100 IAIDNSP---AMIERCRRHIDAYKAPTPVDVIEG 130 (261)
T ss_dssp EEEESCH---HHHHHHHHHHHTSCCSSCEEEEES
T ss_pred EEEECCH---HHHHHHHHHHHhhccCceEEEeec
Confidence 5777765 456666666555443345666654
No 111
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=20.21 E-value=1.1e+02 Score=19.29 Aligned_cols=30 Identities=17% Similarity=-0.108 Sum_probs=24.2
Q ss_pred CcchHHHHHHHHHhhhcccCCCcEEEEEeeCC
Q 033982 7 SEQSHYALMWVLDNLKESISKFPLIIFMAQPP 38 (107)
Q Consensus 7 S~~S~~Al~~A~~~a~~~g~~~~l~llhV~~~ 38 (107)
++.+..+|..|.+++.+.| .+++++-+=+.
T Consensus 18 ~~~s~ell~~A~~La~~~g--~~v~av~~G~~ 47 (217)
T 3ih5_A 18 ADVSLELLTKGRSLANELN--CQLEAVVAGTG 47 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHT--CCEEEEEEESC
T ss_pred CHHHHHHHHHHHHHHHhcC--CeEEEEEECCC
Confidence 4678999999999998876 78888877543
No 112
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=20.09 E-value=83 Score=21.67 Aligned_cols=31 Identities=6% Similarity=-0.063 Sum_probs=20.7
Q ss_pred CeeecCCcchHHHHHHHHHhhhcccCCCcEEEEEe
Q 033982 1 MVAIDESEQSHYALMWVLDNLKESISKFPLIIFMA 35 (107)
Q Consensus 1 lVavDgS~~S~~Al~~A~~~a~~~g~~~~l~llhV 35 (107)
++|||.|+.. +.|.++++..|-...+.+++.
T Consensus 109 V~ave~s~~~----~~a~~~~~~n~~~~~i~~i~~ 139 (376)
T 4hc4_A 109 VYAVEASAIW----QQAREVVRFNGLEDRVHVLPG 139 (376)
T ss_dssp EEEEECSTTH----HHHHHHHHHTTCTTTEEEEES
T ss_pred EEEEeChHHH----HHHHHHHHHcCCCceEEEEee
Confidence 4789988644 445555555544467888886
Done!