BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033983
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O65154|KIWI_ARATH RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis
thaliana GN=KIWI PE=1 SV=1
Length = 107
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/107 (70%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 MSGKGKRKEEEEYDSDGSVDGHAPPKKASK-TDSSDDSDDIVVCEISKNRRVSVRNWQGK 59
MS +GKRK+E+ SD + HAP KK +K D SD SDDIVVC ISKNRRVSVRNW GK
Sbjct: 1 MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60
Query: 60 VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS 106
+W+DIREFYVK+GK PGKKGISLSVDQWNTLR+H E+I KAL D S
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107
>sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis
thaliana GN=KELP PE=1 SV=1
Length = 165
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 48/68 (70%)
Query: 35 DDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDH 94
DD D+++C +S RRV+++ ++GK V IRE+Y K+GK+ P KGISL+ +QW+T + +
Sbjct: 91 DDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKN 150
Query: 95 VEEINKAL 102
+ I A+
Sbjct: 151 MPAIENAV 158
>sp|Q5ZK63|TCP4_CHICK Activated RNA polymerase II transcriptional coactivator p15
OS=Gallus gallus GN=SUB1 PE=2 SV=1
Length = 126
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 56/76 (73%), Gaps = 4/76 (5%)
Query: 28 ASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVD 86
+SK S+ D + + +I K R VSVR+++GKV +DIRE+++ +EG+ PG+KGISL+ +
Sbjct: 51 SSKQSSNRDEN---MFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPE 107
Query: 87 QWNTLRDHVEEINKAL 102
QWN L++ + +I+ A+
Sbjct: 108 QWNQLKEQISDIDDAV 123
>sp|P11031|TCP4_MOUSE Activated RNA polymerase II transcriptional coactivator p15 OS=Mus
musculus GN=Sub1 PE=1 SV=3
Length = 127
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINK 100
+ +I K R VSVR+++GK+ +DIRE+++ EG+ PG+KGISL+++QW+ L++ + +I+
Sbjct: 63 MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDD 122
Query: 101 AL 102
A+
Sbjct: 123 AV 124
>sp|Q63396|TCP4_RAT Activated RNA polymerase II transcriptional coactivator p15
OS=Rattus norvegicus GN=Sub1 PE=2 SV=3
Length = 127
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINK 100
+ +I K R VSVR+++GK+ +DIRE+++ EG+ PG+KGISL+++QW+ L++ + +I+
Sbjct: 63 MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDD 122
Query: 101 AL 102
A+
Sbjct: 123 AV 124
>sp|Q5R6D0|TCP4_PONAB Activated RNA polymerase II transcriptional coactivator p15
OS=Pongo abelii GN=SUB1 PE=2 SV=1
Length = 127
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINK 100
+ +I K R VSVR+++GKV +DIRE+++ EG+ PG+KGISL+ +QW+ L++ + +I+
Sbjct: 63 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 122
Query: 101 AL 102
A+
Sbjct: 123 AV 124
>sp|Q4R947|TCP4_MACFA Activated RNA polymerase II transcriptional coactivator p15
OS=Macaca fascicularis GN=SUB1 PE=2 SV=1
Length = 127
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINK 100
+ +I K R VSVR+++GKV +DIRE+++ EG+ PG+KGISL+ +QW+ L++ + +I+
Sbjct: 63 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 122
Query: 101 AL 102
A+
Sbjct: 123 AV 124
>sp|P53999|TCP4_HUMAN Activated RNA polymerase II transcriptional coactivator p15 OS=Homo
sapiens GN=SUB1 PE=1 SV=3
Length = 127
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINK 100
+ +I K R VSVR+++GKV +DIRE+++ EG+ PG+KGISL+ +QW+ L++ + +I+
Sbjct: 63 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 122
Query: 101 AL 102
A+
Sbjct: 123 AV 124
>sp|Q9VLR5|TCP4_DROME RNA polymerase II transcriptional coactivator OS=Drosophila
melanogaster GN=Ssb-c31a PE=2 SV=1
Length = 110
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 49 RRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKAL 102
R+V + ++G+ VDIREFY K G+ PGKKGISLS+ QW L + EE+ +A+
Sbjct: 55 RQVRINEFRGRKSVDIREFYDKGGQILPGKKGISLSLIQWKKLLEVAEEVTRAI 108
>sp|P87294|TCP4_SCHPO Putative RNA polymerase II transcriptional coactivator
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16A10.02 PE=1 SV=1
Length = 136
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%)
Query: 21 GHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKG 80
G K KT+ D + ++ +R+++ ++G +V IRE+Y K+G PGKKG
Sbjct: 10 GDKASSKKPKTEKQSDHELHWALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKG 69
Query: 81 ISLSVDQWNTLRDHVEEINKALG 103
I+L++++W L+ + E++ +LG
Sbjct: 70 IALNINEWKKLKQLIHEVDDSLG 92
>sp|Q872F4|TCP4_NEUCR Putative RNA polymerase II transcriptional coactivator
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=80A10.210 PE=3 SV=1
Length = 172
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 21 GHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKG 80
G A P++ +K D D E+ NRR+S ++ V+IRE+Y GK PGKKG
Sbjct: 27 GKAQPQELTK---GSDQDGNTFWELGNNRRISSSVFRNTTLVNIREYYDAGGKLMPGKKG 83
Query: 81 ISLSVDQWNTLRDHVEEINKAL 102
ISLS+ Q+ L + ++N L
Sbjct: 84 ISLSLAQYQNLLKVIPQLNADL 105
>sp|P54000|SUB1_YEAST RNA polymerase II transcriptional coactivator SUB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUB1 PE=1
SV=1
Length = 292
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 41 VVCEISKNRRVSVRNWQGKVWVDIREFYV--KEGKKFPGKKGISLSVDQWNTLRDHVEEI 98
+ ++ KN+RV+VR ++ +DIRE+Y+ G+ PGKKGISL+ D ++ L H I
Sbjct: 39 AIFDLGKNKRVTVRQFRNINLIDIREYYLDSSTGEMKPGKKGISLTEDLYDELLKHRLNI 98
Query: 99 NKAL 102
++AL
Sbjct: 99 DEAL 102
>sp|Q94045|TCP4_CAEEL Putative RNA polymerase II transcriptional coactivator
OS=Caenorhabditis elegans GN=T13F2.2 PE=3 SV=1
Length = 124
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 36 DSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKE--GKKFPGKKGISLSVDQWNTLRD 93
DSD + EI R +V ++GK +V+IRE+Y+ K P +KGISLS QW L+D
Sbjct: 56 DSDGNEMFEIGNLRYATVSKFKGKEYVNIREYYIDRDSQKMMPSRKGISLSKAQWANLKD 115
Query: 94 HVEEINKAL 102
+ EI+K
Sbjct: 116 LIPEIDKKF 124
>sp|Q3A4F1|MUTS_PELCD DNA mismatch repair protein MutS OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=mutS PE=3 SV=1
Length = 870
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 20 DGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
+GH K T + +D I+ CE KN ++VR W ++
Sbjct: 724 NGHVAAKTLFATHYHELTDLILTCERVKNLNIAVREWNEQI 764
>sp|Q7MPS3|FPG_VIBVY Formamidopyrimidine-DNA glycosylase OS=Vibrio vulnificus (strain
YJ016) GN=mutM PE=3 SV=3
Length = 269
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 34 SDDSDDIVVCEISKNRRVSVRNW--QGKVWVDIREFYVKEG----KKFPGKKGISLSVDQ 87
+D D + E ++ +RV+V+ + K+ V + Y E + P + +SLS ++
Sbjct: 135 TDAFDGQYMFEKAQGKRVAVKQFIMDNKIVVGVGNIYASESLFRSRILPTRATMSLSAEE 194
Query: 88 WNTLRDHVEE 97
W L H+++
Sbjct: 195 WQRLVSHIKQ 204
>sp|Q7V606|PNP_PROMM Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain MIT 9313) GN=pnp PE=3 SV=1
Length = 723
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 6 KRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIR 65
K+ E+ + + D +D A K ++ S DD V ++ N +V N++ +R
Sbjct: 259 KQFEQTKAERDSKLD--AIKAKTAEAIDSLKEDDAVRKSVNANSKVLSNNFKALTKKLMR 316
Query: 66 EFYVKEGKKFPGKK 79
E +K+GK+ G+K
Sbjct: 317 EQIIKQGKRVDGRK 330
>sp|A2C794|PNP_PROM3 Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain MIT 9303) GN=pnp PE=3 SV=1
Length = 721
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 6 KRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIR 65
K+ E+ + + D +D A K ++ S DD V ++ N +V N++ +R
Sbjct: 257 KQFEQTKAERDSKLD--AIKAKTAEAIDSLKEDDAVRKSVNANSKVLSNNFKALTKKLMR 314
Query: 66 EFYVKEGKKFPGKK 79
E +K+GK+ G+K
Sbjct: 315 EQIIKQGKRVDGRK 328
>sp|Q3YSV8|SYA_EHRCJ Alanine--tRNA ligase OS=Ehrlichia canis (strain Jake) GN=alaS PE=3
SV=2
Length = 887
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 52 SVRNWQGKVWVDIREFYVKEGKKFPG 77
SV+ +GK+WVDI+E Y G KF G
Sbjct: 442 SVQQLKGKLWVDIKEHY--GGTKFVG 465
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,410,673
Number of Sequences: 539616
Number of extensions: 1652490
Number of successful extensions: 9532
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 9472
Number of HSP's gapped (non-prelim): 83
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)