Query 033983
Match_columns 106
No_of_seqs 104 out of 253
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:13:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4agh_A Mosub1, transcription c 100.0 1.2E-35 4.3E-40 220.3 8.6 105 1-105 1-111 (158)
2 1pcf_A P15, transcriptional co 100.0 2.1E-33 7.1E-38 182.7 8.1 64 42-105 2-66 (66)
3 3pm7_A Uncharacterized protein 96.4 0.006 2E-07 40.6 5.1 47 48-97 24-71 (80)
4 4g06_A Uncharacterized protein 96.0 0.019 6.5E-07 38.1 6.0 46 48-96 31-77 (79)
5 2l3a_A Uncharacterized protein 95.9 0.025 8.6E-07 37.8 6.3 46 48-96 26-72 (82)
6 2ltd_A Uncharacterized protein 92.8 0.012 4E-07 39.2 0.0 47 48-97 24-71 (80)
7 2qfm_A Spermine synthase; sper 65.3 12 0.00042 30.1 5.7 54 38-105 42-98 (364)
8 3dmc_A NTF2-like protein; stru 59.9 11 0.00038 24.8 3.9 25 49-73 108-132 (134)
9 3trk_A Nonstructural polyprote 59.8 3.4 0.00012 33.3 1.5 14 79-92 23-36 (324)
10 3fs2_A 2-dehydro-3-deoxyphosph 42.0 10 0.00035 29.9 1.6 25 81-105 274-298 (298)
11 4gua_A Non-structural polyprot 41.7 9.6 0.00033 33.4 1.5 15 79-93 28-42 (670)
12 3o39_A Periplasmic protein rel 39.2 16 0.00053 24.7 2.0 21 77-97 12-32 (108)
13 3or1_C Sulfite reductase GAMA; 36.3 16 0.00054 24.7 1.6 19 77-95 35-54 (105)
14 4h51_A Aspartate aminotransfer 36.1 22 0.00074 28.2 2.7 21 75-97 201-221 (420)
15 1ojj_A Endoglucanase I; hydrol 34.9 36 0.0012 28.2 3.8 40 47-86 263-313 (402)
16 1sau_A Sulfite reductase, desu 34.3 18 0.00061 25.0 1.7 16 79-94 42-57 (115)
17 3g8r_A Probable spore coat pol 33.2 33 0.0011 27.5 3.3 25 80-104 237-261 (350)
18 1eg1_A Endoglucanase I; mutati 32.9 42 0.0014 27.5 3.9 32 47-78 246-283 (371)
19 2ovw_A Endoglucanase I; glycos 32.7 36 0.0012 28.3 3.5 40 47-86 263-313 (411)
20 2hwk_A Helicase NSP2; rossman 32.6 12 0.00041 30.2 0.6 13 79-91 22-34 (320)
21 2wqp_A Polysialic acid capsule 31.6 32 0.0011 27.5 3.0 26 79-104 248-273 (349)
22 1ji8_A Dissimilatory siroheme- 31.5 21 0.00071 24.5 1.6 17 77-93 41-58 (111)
23 1vr6_A Phospho-2-dehydro-3-deo 30.9 39 0.0013 26.9 3.4 25 80-104 323-347 (350)
24 1yx3_A Hypothetical protein DS 29.6 23 0.0008 25.0 1.7 18 77-94 56-73 (132)
25 1gpi_A Exoglucanase I; hydrola 29.5 44 0.0015 27.9 3.5 40 47-86 272-325 (431)
26 3sz8_A 2-dehydro-3-deoxyphosph 29.3 22 0.00075 27.8 1.6 25 81-105 255-279 (285)
27 2xsp_A Cellulose 1,4-beta-cell 29.3 44 0.0015 28.0 3.5 32 47-78 283-320 (440)
28 1o6z_A MDH, malate dehydrogena 29.1 1.8E+02 0.0061 21.7 7.0 57 48-106 241-303 (303)
29 2nvn_A Hypothetical protein; s 28.9 58 0.002 22.7 3.6 25 81-105 34-58 (122)
30 2jro_A Uncharacterized protein 28.4 36 0.0012 22.1 2.3 44 55-105 19-63 (78)
31 3tml_A 2-dehydro-3-deoxyphosph 28.1 24 0.00081 27.6 1.6 25 81-105 256-280 (288)
32 2jtq_A Phage shock protein E; 28.1 35 0.0012 20.2 2.1 30 59-90 2-31 (85)
33 3pfz_A Cellobiohydrolase 1 cat 26.6 53 0.0018 27.5 3.5 40 47-86 280-332 (437)
34 1zw0_A Type III secretion prot 26.3 66 0.0023 20.3 3.2 20 84-103 37-56 (66)
35 3c8i_A Putative membrane prote 24.8 29 0.00098 24.9 1.4 22 81-102 111-132 (141)
36 2ba3_A NIKA; dimer, bacterial 24.8 59 0.002 18.1 2.6 19 79-97 18-36 (51)
37 3p7m_A Malate dehydrogenase; p 24.8 2.3E+02 0.0079 21.6 7.2 42 60-104 273-314 (321)
38 3tl2_A Malate dehydrogenase; c 24.7 2.3E+02 0.008 21.5 7.7 44 60-105 271-314 (315)
39 2uwj_E Type III export protein 24.2 77 0.0026 20.2 3.2 21 83-103 42-62 (70)
40 1vli_A Spore coat polysacchari 23.7 59 0.002 26.4 3.2 20 80-99 261-280 (385)
41 2it9_A Hypothetical protein; s 23.7 59 0.002 22.8 2.8 24 81-104 32-55 (127)
42 1o60_A 2-dehydro-3-deoxyphosph 22.9 30 0.001 26.7 1.3 25 80-104 252-276 (292)
43 3en8_A Uncharacterized NTF-2 l 22.8 1.1E+02 0.0038 19.6 4.0 25 49-73 91-115 (128)
44 2nwr_A 2-dehydro-3-deoxyphosph 22.6 33 0.0011 26.3 1.5 25 80-104 235-259 (267)
45 2qkf_A 3-deoxy-D-manno-octulos 22.2 32 0.0011 26.3 1.4 25 80-104 249-273 (280)
46 3f4a_A Uncharacterized protein 21.9 78 0.0027 21.8 3.2 28 59-89 54-81 (169)
47 2rfw_A Cellulose 1,4-beta-cell 21.8 2.6E+02 0.009 23.3 6.8 37 47-86 283-327 (430)
48 2x0j_A Malate dehydrogenase; o 20.4 86 0.0029 24.0 3.4 25 81-105 268-292 (294)
No 1
>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}
Probab=100.00 E-value=1.2e-35 Score=220.27 Aligned_cols=105 Identities=33% Similarity=0.530 Sum_probs=66.4
Q ss_pred CCCCCcccccccccC-CCCCCCCCCCCCCCCCCC-----CCCCCCcEEEEcCCceEEEEeeeCCceEEEeEEEEecCCee
Q 033983 1 MSGKGKRKEEEEYDS-DGSVDGHAPPKKASKTDS-----SDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKK 74 (106)
Q Consensus 1 ~~~~~k~k~~~~~~s-d~~~~~~~~~Kk~~~~~~-----~~~~~~~~~~~Ls~~rrVtV~~FkG~~~VdIREyY~kdGe~ 74 (106)
|+.|.+.+.+...++ ++..+.++|.|+++.... ..+.++..+|+||++|||+|++|+|++||||||||+++|+|
T Consensus 1 Msskkr~~~~~~~~~~~~~~~~~~~~Kk~k~~~~~~~~~~~d~~g~~~~~Ls~~rrvtV~~fkG~~~vdIREyY~k~G~~ 80 (158)
T 4agh_A 1 MTSKKRARDEEAQSGGSEAETKPAPVKKAKSKASNPGGSQVDAEGNPFWEISDKRRVGISQFKKMDFINIREYYEAGGEM 80 (158)
T ss_dssp -------------------------------------CCEECTTSCEEEESSSSEEEEEEEETTEEEEEEEEEEEETTEE
T ss_pred CCcccccchhhccccccccccccCCccccccccCCCCCCccCCCCCEeEEcCCCcEEEEEeeCCCEEEEeEeEEcCCCcC
Confidence 777766665543333 344444444454443311 12344557999999999999999999999999999999999
Q ss_pred cCcccceecCHHHHHHHHHhHHHHHHHhhcC
Q 033983 75 FPGKKGISLSVDQWNTLRDHVEEINKALGDN 105 (106)
Q Consensus 75 ~PgKKGISL~~eqw~~L~~~~~~Id~ai~~~ 105 (106)
+||||||||+++||+.|+++++.|++||+++
T Consensus 81 ~PgkKGISLs~~qw~~L~~~~~~I~~ai~~~ 111 (158)
T 4agh_A 81 KPGKKGIGLTVDQYTAFLKAIPAINAELRSR 111 (158)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccceecCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999865
No 2
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=100.00 E-value=2.1e-33 Score=182.73 Aligned_cols=64 Identities=44% Similarity=0.819 Sum_probs=62.0
Q ss_pred EEEcCCceEEEEeeeCCceEEEeEEEE-ecCCeecCcccceecCHHHHHHHHHhHHHHHHHhhcC
Q 033983 42 VCEISKNRRVSVRNWQGKVWVDIREFY-VKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDN 105 (106)
Q Consensus 42 ~~~Ls~~rrVtV~~FkG~~~VdIREyY-~kdGe~~PgKKGISL~~eqw~~L~~~~~~Id~ai~~~ 105 (106)
+|+||++|||+|++|+|++|||||||| .+||+++||||||||+++||++|++++++|++||++|
T Consensus 2 ~~~ls~~rrvtv~~fkG~~~VdIRe~Y~~kdG~~~PgkKGIsL~~~qw~~l~~~~~~I~~ai~~~ 66 (66)
T 1pcf_A 2 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 66 (66)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEECCCCeEEEEEEeCCCEEEEEEEEEECCCCcCCCCccccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 789999999999999999999999999 5799999999999999999999999999999999876
No 3
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=96.38 E-value=0.006 Score=40.64 Aligned_cols=47 Identities=23% Similarity=0.559 Sum_probs=36.4
Q ss_pred ceEEEEeeeCCc-eEEEeEEEEecCCeecCcccceecCHHHHHHHHHhHHH
Q 033983 48 NRRVSVRNWQGK-VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEE 97 (106)
Q Consensus 48 ~rrVtV~~FkG~-~~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~~ 97 (106)
.+-+.+-.|+|. +-.|||.|=.+ -.+.| |||+||.++...|++++..
T Consensus 24 ~KELNlVSWN~~~pKyDIR~W~pd--h~kMg-KGITLT~eE~~~Lk~~L~~ 71 (80)
T 3pm7_A 24 RKELNLISWNGRPPKFDLREWAPD--HEKMG-KGITLTNEEFAELSKTIKS 71 (80)
T ss_dssp EEEEEEECGGGCCCEEEEEEECTT--SSSEE-EEEEECHHHHHHHHHHHHH
T ss_pred eEEEEEEEECCCCCCccccccCcc--hhhcc-CcceeCHHHHHHHHHHHHH
Confidence 456777788876 48999998443 22556 8999999999999988764
No 4
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=96.03 E-value=0.019 Score=38.13 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=36.5
Q ss_pred ceEEEEeeeCCce-EEEeEEEEecCCeecCcccceecCHHHHHHHHHhHH
Q 033983 48 NRRVSVRNWQGKV-WVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVE 96 (106)
Q Consensus 48 ~rrVtV~~FkG~~-~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~ 96 (106)
.+-+..-.|.|+. -.|||.|=.+. .+.| |||+||.++...|++++.
T Consensus 31 ~KELNlVSWN~~~pKyDIR~W~pdh--~kMg-KGITLT~eE~~~L~~~L~ 77 (79)
T 4g06_A 31 TKEINRVSFNGAPAKFDIRAWSPDH--TKMG-KGITLSNEEFQTMVDAFK 77 (79)
T ss_dssp EEEEEEEEETTCCCEEEEEEECTTS--SCBC-CCEEECHHHHHHHHHHHH
T ss_pred eEEEEEEEeCCCCCCccccccCccc--cccc-CccccCHHHHHHHHHHHc
Confidence 4667888898765 89999985442 3566 899999999999998775
No 5
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=95.93 E-value=0.025 Score=37.76 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=34.8
Q ss_pred ceEEEEeeeCCc-eEEEeEEEEecCCeecCcccceecCHHHHHHHHHhHH
Q 033983 48 NRRVSVRNWQGK-VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVE 96 (106)
Q Consensus 48 ~rrVtV~~FkG~-~~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~ 96 (106)
.+-+..-.|.|. +-.|||.|=-+- .+=| |||+||.+|...|++.+.
T Consensus 26 ~KELNlVSWNg~~pKyDIR~Wspdh--~kMG-KGITLT~eE~~~L~~~L~ 72 (82)
T 2l3a_A 26 TKEINRVSFNGAPAKFDIRAWSPDH--TKMG-KGITLSNEEFQTMVDAFK 72 (82)
T ss_dssp EEEEEEEEESSSCEEEEEEEECSTT--CCCC-CCEEECHHHHHHHHHHHH
T ss_pred eEEEEEEeECCCCCCccccccCcch--hhcc-CcccccHHHHHHHHHHHH
Confidence 566777888876 489999983332 2334 899999999999988764
No 6
>2ltd_A Uncharacterized protein YDBC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Lactococcus lactis subsp}
Probab=92.78 E-value=0.012 Score=39.20 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=33.6
Q ss_pred ceEEEEeeeCCc-eEEEeEEEEecCCeecCcccceecCHHHHHHHHHhHHH
Q 033983 48 NRRVSVRNWQGK-VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEE 97 (106)
Q Consensus 48 ~rrVtV~~FkG~-~~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~~ 97 (106)
.+-+..-.|.|. +-.|||.|=-+- .+=| |||+||.+|...|++.+..
T Consensus 24 ~KELNlVSWNg~~pKyDIR~Wspdh--~kMG-KGITLT~eE~~~L~~~Ln~ 71 (80)
T 2ltd_A 24 RKELNRVSWNDAEPKYDIRTWSPDH--EKMG-KGITLSEEEFGVLLKELGN 71 (80)
Confidence 344566677765 489999984332 2234 8999999999999887654
No 7
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=65.27 E-value=12 Score=30.08 Aligned_cols=54 Identities=11% Similarity=0.257 Sum_probs=30.8
Q ss_pred CCcEEEEcC--CceEEEEeee-CCceEEEeEEEEecCCeecCcccceecCHHHHHHHHHhHHHHHHHhhcC
Q 033983 38 DDIVVCEIS--KNRRVSVRNW-QGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDN 105 (106)
Q Consensus 38 ~~~~~~~Ls--~~rrVtV~~F-kG~~~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~~Id~ai~~~ 105 (106)
+..+.+-+. +...+++|-| .|-+.||| |||..|++-. +.+.+....++.-+++|
T Consensus 42 ~~g~l~~~~~~~~~~~~~r~~~~glv~~~~-~~~~~d~~~~-------------~~~~~~~~~~~~~~~~~ 98 (364)
T 2qfm_A 42 DHGYLATYTNKNGSFANLRIYPHGLVLLDL-QSYDGDAQGK-------------EEIDSILNKVEERMKEL 98 (364)
T ss_dssp TTEEEEEEECTTSCEEEEEECTTSEEEEEE-EEC--------------------CHHHHHHHHHHHHHHC-
T ss_pred CCceEEEEecCCCcEEEEEeeccceEEEeh-hhhcccccch-------------hHHHHHHHHHHHHHHHH
Confidence 334444453 5788999999 69999999 5777765543 34444455566666555
No 8
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=59.88 E-value=11 Score=24.80 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEEeeeCCceEEEeEEEEecCCe
Q 033983 49 RRVSVRNWQGKVWVDIREFYVKEGK 73 (106)
Q Consensus 49 rrVtV~~FkG~~~VdIREyY~kdGe 73 (106)
..|.+-++++-.-+.+|+||..+|+
T Consensus 108 ~~~~~f~v~dGkI~~~r~Y~d~~~~ 132 (134)
T 3dmc_A 108 RVAVSFDVRGDKICSYREYFGSDGK 132 (134)
T ss_dssp EEEEEEEEETTEEEEEEEEECSCSB
T ss_pred cEEEEEEEECCEEEEEEEEECCCCC
Confidence 3477888899999999999998876
No 9
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=59.82 E-value=3.4 Score=33.29 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=12.7
Q ss_pred cceecCHHHHHHHH
Q 033983 79 KGISLSVDQWNTLR 92 (106)
Q Consensus 79 KGISL~~eqw~~L~ 92 (106)
-||+||.+||+.|.
T Consensus 23 AGI~lT~~qW~~i~ 36 (324)
T 3trk_A 23 AGIKLNDRQWSQII 36 (324)
T ss_dssp TTCCCCHHHHHHHC
T ss_pred cCccccHHHHHHhh
Confidence 59999999999984
No 10
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=41.98 E-value=10 Score=29.90 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=22.7
Q ss_pred eecCHHHHHHHHHhHHHHHHHhhcC
Q 033983 81 ISLSVDQWNTLRDHVEEINKALGDN 105 (106)
Q Consensus 81 ISL~~eqw~~L~~~~~~Id~ai~~~ 105 (106)
-||+++++..|++.+..|+.+++.|
T Consensus 274 ~sl~p~el~~lv~~ir~i~~a~~~~ 298 (298)
T 3fs2_A 274 NMVPIDKMPALLEKLMAFDRIAKAL 298 (298)
T ss_dssp GCEEGGGHHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999865
No 11
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=41.69 E-value=9.6 Score=33.44 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.1
Q ss_pred cceecCHHHHHHHHH
Q 033983 79 KGISLSVDQWNTLRD 93 (106)
Q Consensus 79 KGISL~~eqw~~L~~ 93 (106)
-||+||.+||+.|.-
T Consensus 28 Agi~lt~~qw~~~~p 42 (670)
T 4gua_A 28 AGIVLTGCQWSELFP 42 (670)
T ss_dssp TTCCCCHHHHHHHCH
T ss_pred cCccccHHHHHHHhH
Confidence 599999999998853
No 12
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=39.18 E-value=16 Score=24.66 Aligned_cols=21 Identities=19% Similarity=0.261 Sum_probs=17.1
Q ss_pred cccceecCHHHHHHHHHhHHH
Q 033983 77 GKKGISLSVDQWNTLRDHVEE 97 (106)
Q Consensus 77 gKKGISL~~eqw~~L~~~~~~ 97 (106)
+-|||.||.+|=.+|+..+.+
T Consensus 12 ~~~~L~LTd~Qk~qir~L~~~ 32 (108)
T 3o39_A 12 SFKDLNLTDAQKQQIREIMKG 32 (108)
T ss_dssp -CCCSCCCHHHHHHHHHHHHT
T ss_pred CcCCCCCCHHHHHHHHHHHHH
Confidence 468999999999998877654
No 13
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=36.29 E-value=16 Score=24.72 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.2
Q ss_pred cccce-ecCHHHHHHHHHhH
Q 033983 77 GKKGI-SLSVDQWNTLRDHV 95 (106)
Q Consensus 77 gKKGI-SL~~eqw~~L~~~~ 95 (106)
-.-|| .||.++|+.+.-..
T Consensus 35 ~~egI~eLTe~HW~vI~flR 54 (105)
T 3or1_C 35 GSEGIGAGSADHQKIIDFLQ 54 (105)
T ss_dssp GGGTCSSCCHHHHHHHHHHH
T ss_pred HHCCCccCCHHHHHHHHHHH
Confidence 46799 99999999876543
No 14
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=36.14 E-value=22 Score=28.21 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=17.7
Q ss_pred cCcccceecCHHHHHHHHHhHHH
Q 033983 75 FPGKKGISLSVDQWNTLRDHVEE 97 (106)
Q Consensus 75 ~PgKKGISL~~eqw~~L~~~~~~ 97 (106)
-|| |..++.+||.+|.+.+.+
T Consensus 201 NPt--G~~~~~~~~~~i~~~~~~ 221 (420)
T 4h51_A 201 NPT--GVDPSQEQWNEIASLMLA 221 (420)
T ss_dssp TTT--CCCCCHHHHHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHHh
Confidence 366 999999999999887754
No 15
>1ojj_A Endoglucanase I; hydrolase, cellulose degradation, glycosynthase; HET: BGC GAL GLC NAG; 1.4A {Humicola insolens} SCOP: b.29.1.10 PDB: 1oji_A* 1ojk_A* 1dym_A* 1a39_A* 2a39_A*
Probab=34.88 E-value=36 Score=28.22 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=28.9
Q ss_pred CceEEEEeeeCC---ceEEEeEEEEecCCeecCcc----cce----ecCHH
Q 033983 47 KNRRVSVRNWQG---KVWVDIREFYVKEGKKFPGK----KGI----SLSVD 86 (106)
Q Consensus 47 ~~rrVtV~~FkG---~~~VdIREyY~kdGe~~PgK----KGI----SL~~e 86 (106)
.+++-.|..|-+ -.|..||-||..+|+..|.. -|+ ||+.+
T Consensus 263 ~k~fTVVTQFit~~~G~L~EIrR~YVQ~GkvI~n~~~~~~g~~~~nSItd~ 313 (402)
T 1ojj_A 263 LKPFTVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTNKEGVPYTNMIDDE 313 (402)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEEEETTEEECCCCCCCTTSCCCSSBCHH
T ss_pred CCCeEEEeeeecCCCCCcceeeEEEEECCEEEeCCCcccCCCCCCCccCHH
Confidence 455556677864 48999999999999887644 233 67765
No 16
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=34.28 E-value=18 Score=24.96 Aligned_cols=16 Identities=25% Similarity=0.601 Sum_probs=13.5
Q ss_pred cceecCHHHHHHHHHh
Q 033983 79 KGISLSVDQWNTLRDH 94 (106)
Q Consensus 79 KGISL~~eqw~~L~~~ 94 (106)
-||.||.++|+.+.-.
T Consensus 42 egIeLTe~HW~VI~fl 57 (115)
T 1sau_A 42 QPIELTEEHWKIIRYL 57 (115)
T ss_dssp SCCCCCHHHHHHHHHH
T ss_pred CCceECHHHHHHHHHH
Confidence 7999999999887543
No 17
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=33.21 E-value=33 Score=27.52 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=22.7
Q ss_pred ceecCHHHHHHHHHhHHHHHHHhhc
Q 033983 80 GISLSVDQWNTLRDHVEEINKALGD 104 (106)
Q Consensus 80 GISL~~eqw~~L~~~~~~Id~ai~~ 104 (106)
--||+|+||..|+..+..|..|+..
T Consensus 237 ~~Sl~P~ef~~lv~~ir~i~~alG~ 261 (350)
T 3g8r_A 237 NYSANPEQVRRWLAAAARALAMLGD 261 (350)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCC
Confidence 4899999999999999999999864
No 18
>1eg1_A Endoglucanase I; mutation, cellulose degradation; HET: NAG; 3.60A {Hypocrea jecorina} SCOP: b.29.1.10
Probab=32.95 E-value=42 Score=27.52 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=24.8
Q ss_pred CceEEEEeeeCC------ceEEEeEEEEecCCeecCcc
Q 033983 47 KNRRVSVRNWQG------KVWVDIREFYVKEGKKFPGK 78 (106)
Q Consensus 47 ~~rrVtV~~FkG------~~~VdIREyY~kdGe~~PgK 78 (106)
.+++-.|..|-+ -.|..||-+|..+|+..|..
T Consensus 246 ~k~fTVVTQFit~d~t~~G~L~EIrR~YVQ~GkvI~n~ 283 (371)
T 1eg1_A 246 SKTFTIITQFNTDNGSPSGNLVSITRKYQQNGVDIPSA 283 (371)
T ss_dssp TSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEECCCS
T ss_pred CCCeEEEeeeecCCCCCCCccceeeEEEEECCEEEeCC
Confidence 344555677875 48999999999999988754
No 19
>2ovw_A Endoglucanase I; glycosyl hydrolase, complexed with cellobio glycosylated protein, hydrolase; HET: NAG CBI; 2.30A {Fusarium oxysporum} SCOP: b.29.1.10 PDB: 3ovw_A* 4ovw_A* 1ovw_A*
Probab=32.70 E-value=36 Score=28.25 Aligned_cols=40 Identities=8% Similarity=0.224 Sum_probs=28.5
Q ss_pred CceEEEEeeeCC---ceEEEeEEEEecCCeecCcc----cc----eecCHH
Q 033983 47 KNRRVSVRNWQG---KVWVDIREFYVKEGKKFPGK----KG----ISLSVD 86 (106)
Q Consensus 47 ~~rrVtV~~FkG---~~~VdIREyY~kdGe~~PgK----KG----ISL~~e 86 (106)
.+++-.|..|-+ -.|..||-+|..+|+..|.. -| =||+.+
T Consensus 263 ~k~fTVVTQFit~~~G~L~EIrR~YVQ~GkvI~n~~~~~~g~~~~nSItd~ 313 (411)
T 2ovw_A 263 TRKFTVTSQFVANKQGDLIELHRHYIQDNKVIESAVVNISGPPKINFINDK 313 (411)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEEEETTEEEECCCCCSSSSCSCSSBCHH
T ss_pred CCCeEEEeeeecCCCCCcceeeEEEEECCEEEeCCCcccCCCCCCCccCHH
Confidence 455556677864 48999999999999887543 23 367764
No 20
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=32.58 E-value=12 Score=30.16 Aligned_cols=13 Identities=46% Similarity=1.094 Sum_probs=11.7
Q ss_pred cceecCHHHHHHH
Q 033983 79 KGISLSVDQWNTL 91 (106)
Q Consensus 79 KGISL~~eqw~~L 91 (106)
-||+||.+||+.|
T Consensus 22 Agi~lt~~qw~~~ 34 (320)
T 2hwk_A 22 AGIDMTTEQWNTV 34 (320)
T ss_dssp TTCCCCHHHHTTS
T ss_pred cCccccHHHhccc
Confidence 5999999999984
No 21
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=31.55 E-value=32 Score=27.47 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.0
Q ss_pred cceecCHHHHHHHHHhHHHHHHHhhc
Q 033983 79 KGISLSVDQWNTLRDHVEEINKALGD 104 (106)
Q Consensus 79 KGISL~~eqw~~L~~~~~~Id~ai~~ 104 (106)
--.||+|+||..|++.+..|..|+..
T Consensus 248 ~~~SL~p~ef~~lv~~ir~~~~alG~ 273 (349)
T 2wqp_A 248 IVCSMNPDTFKELKQGAHALKLARGG 273 (349)
T ss_dssp GGGCBCHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHhCC
Confidence 35899999999999999999998863
No 22
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=31.54 E-value=21 Score=24.51 Aligned_cols=17 Identities=18% Similarity=0.603 Sum_probs=14.2
Q ss_pred cccce-ecCHHHHHHHHH
Q 033983 77 GKKGI-SLSVDQWNTLRD 93 (106)
Q Consensus 77 gKKGI-SL~~eqw~~L~~ 93 (106)
-.-|| .||.++|+.+.-
T Consensus 41 ~~egI~eLTe~HW~VI~f 58 (111)
T 1ji8_A 41 ELEGIQKMTEEHWKLVKY 58 (111)
T ss_dssp HHTCCSSCCHHHHHHHHH
T ss_pred hcCCchhcCHHHHHHHHH
Confidence 56799 999999998754
No 23
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=30.86 E-value=39 Score=26.95 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.5
Q ss_pred ceecCHHHHHHHHHhHHHHHHHhhc
Q 033983 80 GISLSVDQWNTLRDHVEEINKALGD 104 (106)
Q Consensus 80 GISL~~eqw~~L~~~~~~Id~ai~~ 104 (106)
--||+++++..|++.+..|..++..
T Consensus 323 ~~sL~p~e~~~lv~~ir~i~~alg~ 347 (350)
T 1vr6_A 323 KQSLDFELFKELVQEMKKLADALGV 347 (350)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcCCHHHHHHHHHHHHHHHHHhCc
Confidence 4689999999999999999999864
No 24
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=29.62 E-value=23 Score=24.99 Aligned_cols=18 Identities=11% Similarity=0.451 Sum_probs=14.7
Q ss_pred cccceecCHHHHHHHHHh
Q 033983 77 GKKGISLSVDQWNTLRDH 94 (106)
Q Consensus 77 gKKGISL~~eqw~~L~~~ 94 (106)
-.-||.||.+.|+.+.-.
T Consensus 56 ~~EgIeLTe~HWeVI~fl 73 (132)
T 1yx3_A 56 KQDNLELTEEHWDIINFL 73 (132)
T ss_dssp HTTTCCCCHHHHHHHHHH
T ss_pred HHcCCCcCHHHHHHHHHH
Confidence 468999999999887543
No 25
>1gpi_A Exoglucanase I; hydrolase, glycosidase, cellulase, beta-glucanase, glycoprotein, cellulose degradation, enzyme, reaction center; HET: NAG; 1.32A {Phanerochaete chrysosporium} SCOP: b.29.1.10 PDB: 1h46_X* 1z3t_A* 1z3v_A* 1z3w_A*
Probab=29.48 E-value=44 Score=27.92 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=29.0
Q ss_pred CceEEEEeeeCC------ceEEEeEEEEecCCeecCcc----cc----eecCHH
Q 033983 47 KNRRVSVRNWQG------KVWVDIREFYVKEGKKFPGK----KG----ISLSVD 86 (106)
Q Consensus 47 ~~rrVtV~~FkG------~~~VdIREyY~kdGe~~PgK----KG----ISL~~e 86 (106)
.+++-.|..|-+ -.|..||-||..+|+..|-. -| =||+.+
T Consensus 272 ~k~fTVVTQFit~d~t~~G~L~EIrR~YVQ~GkvI~n~~~~~~g~~~~nSItd~ 325 (431)
T 1gpi_A 272 SKPFTVVTQFLTNDNTSTGTLSEIRRIYIQNGKVIQNSVANIPGVDPVNSITDN 325 (431)
T ss_dssp TSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEEEECCCCCCTTSCCCSSBCHH
T ss_pred CCCeEEEEEeeccCCCCCCchheeeeeEEECCEEEeCCCcccCCCCCCCccCHH
Confidence 455566777875 48999999999999887543 23 367765
No 26
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=29.29 E-value=22 Score=27.76 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.9
Q ss_pred eecCHHHHHHHHHhHHHHHHHhhcC
Q 033983 81 ISLSVDQWNTLRDHVEEINKALGDN 105 (106)
Q Consensus 81 ISL~~eqw~~L~~~~~~Id~ai~~~ 105 (106)
-||+++++..|++.+..|+.++..+
T Consensus 255 ~sl~p~el~~lv~~i~~i~~~lg~~ 279 (285)
T 3sz8_A 255 SALPLHQLEGLLSQMKAIDDLVKRM 279 (285)
T ss_dssp CCEEGGGHHHHHHHHHHHHHHHTTC
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999999999754
No 27
>2xsp_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase; HET: NAG EPE XYS; 1.70A {Heterobasidion annosum} PDB: 2yg1_A*
Probab=29.29 E-value=44 Score=27.96 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=24.6
Q ss_pred CceEEEEeeeCC------ceEEEeEEEEecCCeecCcc
Q 033983 47 KNRRVSVRNWQG------KVWVDIREFYVKEGKKFPGK 78 (106)
Q Consensus 47 ~~rrVtV~~FkG------~~~VdIREyY~kdGe~~PgK 78 (106)
.+++-.|..|-+ -.|..||-||..+|+..|-.
T Consensus 283 ~k~fTVVTQFit~d~t~~G~L~EIrR~YVQ~GkvI~n~ 320 (440)
T 2xsp_A 283 NSKFTVVTQFLTSDNTTTGTLHEIRRLYVQNGKVIANS 320 (440)
T ss_dssp TSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEEEECC
T ss_pred CCCeEEEEEeeccCCCCCCchheeeeeEEECCEEEeCC
Confidence 455566777875 48999999999999887543
No 28
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Probab=29.12 E-value=1.8e+02 Score=21.69 Aligned_cols=57 Identities=11% Similarity=0.009 Sum_probs=39.0
Q ss_pred ceEEEEeeeC-Cc-----eEEEeEEEEecCCeecCcccceecCHHHHHHHHHhHHHHHHHhhcCC
Q 033983 48 NRRVSVRNWQ-GK-----VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS 106 (106)
Q Consensus 48 ~rrVtV~~Fk-G~-----~~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~~Id~ai~~~~ 106 (106)
++.+.|..|. |. .|+-+.-...++|-+.-- .+.|+.++-..|.+.++.|.+.++++|
T Consensus 241 ~~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~--~~~l~~~e~~~l~~s~~~l~~~~~~~~ 303 (303)
T 1o6z_A 241 GEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIV--EWDLDDYEQDLMADAAEKLSDQYDKIS 303 (303)
T ss_dssp CCEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEEC--CCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEecCCccCCcceEEEEEEEEeCCeeEEec--CCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445555553 43 345555544467755432 268999999999999999999998875
No 29
>2nvn_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 2.50A {Synechococcus elongatus} SCOP: d.18.1.3
Probab=28.89 E-value=58 Score=22.71 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=22.6
Q ss_pred eecCHHHHHHHHHhHHHHHHHhhcC
Q 033983 81 ISLSVDQWNTLRDHVEEINKALGDN 105 (106)
Q Consensus 81 ISL~~eqw~~L~~~~~~Id~ai~~~ 105 (106)
|-||..+|+.|...+..+.+.+..+
T Consensus 34 iELTe~E~~~f~~Ll~qL~~~~~~i 58 (122)
T 2nvn_A 34 VELTAAEMADFCRLVQQLAETIAAI 58 (122)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHTS
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999888754
No 30
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=28.36 E-value=36 Score=22.14 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=27.1
Q ss_pred eeCCceEEE-eEEEEecCCeecCcccceecCHHHHHHHHHhHHHHHHHhhcC
Q 033983 55 NWQGKVWVD-IREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDN 105 (106)
Q Consensus 55 ~FkG~~~Vd-IREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~~Id~ai~~~ 105 (106)
-|+|..||. |-.|=-++|..++-++ +..|+ ...+.+|+.+|..|
T Consensus 19 lF~Gri~I~g~G~FeFd~GkillP~~----~d~~~---~~~~sEIN~~I~~L 63 (78)
T 2jro_A 19 FLTGVIWVKDLGRLEFEKGRFLLPRK----SLPKV---KQAILELNELIEAQ 63 (78)
T ss_dssp HCSEEEEETTTEEEEEETTEECCCSS----CCHHH---HHHHHHHHHHHHHH
T ss_pred HccceEEEEecccEEEcCCEEeCCcc----ccHHH---HHHHHHHHHHHHHH
Confidence 388999885 4444338898875432 23333 44567777777654
No 31
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=28.13 E-value=24 Score=27.56 Aligned_cols=25 Identities=12% Similarity=0.310 Sum_probs=22.3
Q ss_pred eecCHHHHHHHHHhHHHHHHHhhcC
Q 033983 81 ISLSVDQWNTLRDHVEEINKALGDN 105 (106)
Q Consensus 81 ISL~~eqw~~L~~~~~~Id~ai~~~ 105 (106)
-||+++++..|++.+..|+.++..+
T Consensus 256 ~sl~p~el~~lv~~ir~i~~alg~~ 280 (288)
T 3tml_A 256 NAVPLNRMGALLETLVTLDQAVKRN 280 (288)
T ss_dssp GCEEGGGHHHHHHHHHHHHHHHHSS
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCC
Confidence 5799999999999999999998753
No 32
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=28.11 E-value=35 Score=20.23 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=20.1
Q ss_pred ceEEEeEEEEecCCeecCcccceecCHHHHHH
Q 033983 59 KVWVDIREFYVKEGKKFPGKKGISLSVDQWNT 90 (106)
Q Consensus 59 ~~~VdIREyY~kdGe~~PgKKGISL~~eqw~~ 90 (106)
.++||+|+-.+=..--.||. |+++.+++..
T Consensus 2 ~~liDvR~~~e~~~ghIpgA--~~ip~~~l~~ 31 (85)
T 2jtq_A 2 EHWIDVRVPEQYQQEHVQGA--INIPLKEVKE 31 (85)
T ss_dssp EEEEECSCHHHHTTEEETTC--EECCHHHHHH
T ss_pred CEEEECCCHHHHHhCCCCCC--EEcCHHHHHH
Confidence 46899998544344567884 7888766543
No 33
>3pfz_A Cellobiohydrolase 1 catalytic domain; cellulose; HET: PCA NAG BMA MAN CTT CBI; 1.10A {Talaromyces emersonii} SCOP: b.29.1.10 PDB: 1q9h_A* 3pfj_A* 3pfx_A* 3pl3_A*
Probab=26.57 E-value=53 Score=27.47 Aligned_cols=40 Identities=18% Similarity=0.397 Sum_probs=28.1
Q ss_pred CceEEEEeeeCC------ceEEEeEEEEecCCeecCcc-------cceecCHH
Q 033983 47 KNRRVSVRNWQG------KVWVDIREFYVKEGKKFPGK-------KGISLSVD 86 (106)
Q Consensus 47 ~~rrVtV~~FkG------~~~VdIREyY~kdGe~~PgK-------KGISL~~e 86 (106)
.+++-.|..|-. -.|.-||-||..+|+..|.. .+=||+.+
T Consensus 280 tk~fTVVTQFit~dgt~~G~L~EIrR~YVQnGkvI~n~~~~~~g~~~nSItd~ 332 (437)
T 3pfz_A 280 TKPFTVVTQFLTDDGTDTGTLSEIKRFYIQNSNVIPQPNSDISGVTGNSITTE 332 (437)
T ss_dssp TSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEEEECCCCCSTTCCSSSBCHH
T ss_pred CCCeEEEEEeecCCCCCCCchhheeEEEEECCEEEeCCCccCCCCCCCccCHH
Confidence 445556678842 48999999999999866533 34567765
No 34
>1zw0_A Type III secretion protein; chaperone, translocation, export; 1.80A {Yersinia pestis} PDB: 2p58_A
Probab=26.25 E-value=66 Score=20.30 Aligned_cols=20 Identities=10% Similarity=0.322 Sum_probs=18.0
Q ss_pred CHHHHHHHHHhHHHHHHHhh
Q 033983 84 SVDQWNTLRDHVEEINKALG 103 (106)
Q Consensus 84 ~~eqw~~L~~~~~~Id~ai~ 103 (106)
+|.||..+....+.|++||.
T Consensus 37 ~pqqYQ~~q~q~~A~eaal~ 56 (66)
T 1zw0_A 37 DAKQYQVWQRESKALESAIA 56 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999875
No 35
>3c8i_A Putative membrane protein; STRU genomics, PSI, MCSG, protein structure initiative; 1.95A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=24.85 E-value=29 Score=24.92 Aligned_cols=22 Identities=18% Similarity=0.581 Sum_probs=18.6
Q ss_pred eecCHHHHHHHHHhHHHHHHHh
Q 033983 81 ISLSVDQWNTLRDHVEEINKAL 102 (106)
Q Consensus 81 ISL~~eqw~~L~~~~~~Id~ai 102 (106)
=+++.+||+.|..+++.+++.-
T Consensus 111 ~aIp~~eW~~L~~~~~r~~eV~ 132 (141)
T 3c8i_A 111 STIPSEQWTTLSKNLNKLDQVR 132 (141)
T ss_dssp HHSCHHHHHHHHHTGGGHHHHH
T ss_pred HhCCHHHHHHHHHHhhhHHHHH
Confidence 3588999999999999888754
No 36
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=24.84 E-value=59 Score=18.06 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.0
Q ss_pred cceecCHHHHHHHHHhHHH
Q 033983 79 KGISLSVDQWNTLRDHVEE 97 (106)
Q Consensus 79 KGISL~~eqw~~L~~~~~~ 97 (106)
-.|.|+++++..|.+.+..
T Consensus 18 i~vRlt~eE~~~l~~~A~~ 36 (51)
T 2ba3_A 18 RTLRFSPVEDETIRKKAED 36 (51)
T ss_dssp EEEEECHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHH
Confidence 4688999999999988764
No 37
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=24.83 E-value=2.3e+02 Score=21.57 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=31.7
Q ss_pred eEEEeEEEEecCCeecCcccceecCHHHHHHHHHhHHHHHHHhhc
Q 033983 60 VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGD 104 (106)
Q Consensus 60 ~~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~~Id~ai~~ 104 (106)
+|+.+.--..++|-+.- ++.|++++-+.|...+..|.+.++.
T Consensus 273 v~~s~P~~~g~~Gv~~v---~l~L~~~E~~~l~~s~~~l~~~~~~ 314 (321)
T 3p7m_A 273 LFVGVPTEISANGVRPI---EVEISDKEREQLQVSINAIKDLNKA 314 (321)
T ss_dssp EEEEEEEEEETTEEEEC---CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEcCCEEEEe---CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35666555556676555 7899999999999999988877654
No 38
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=24.70 E-value=2.3e+02 Score=21.54 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=32.8
Q ss_pred eEEEeEEEEecCCeecCcccceecCHHHHHHHHHhHHHHHHHhhcC
Q 033983 60 VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDN 105 (106)
Q Consensus 60 ~~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~~Id~ai~~~ 105 (106)
+|+.+.--..++|-+.- -++.|+.++-+.|...+..|.+.+++|
T Consensus 271 ~~~s~P~~~g~~Gv~~v--~~l~L~~~E~~~l~~s~~~l~~~~~~~ 314 (315)
T 3tl2_A 271 LYLGVPVILGGNGIEKI--IELELLADEKEALDRSVESVRNVMKVL 314 (315)
T ss_dssp EEEEEEEEEETTEEEEE--CCCCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEEEEeCCEEEEE--cCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444445676554 258899999999999999999998876
No 39
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=24.20 E-value=77 Score=20.19 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=18.9
Q ss_pred cCHHHHHHHHHhHHHHHHHhh
Q 033983 83 LSVDQWNTLRDHVEEINKALG 103 (106)
Q Consensus 83 L~~eqw~~L~~~~~~Id~ai~ 103 (106)
.+|.||..+....+.|.++|.
T Consensus 42 ~~pqqyQ~~~qQ~~AieAal~ 62 (70)
T 2uwj_E 42 ACPERFQFLQQQARALEGGLG 62 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999885
No 40
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=23.69 E-value=59 Score=26.39 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=18.9
Q ss_pred ceecCHHHHHHHHHhHHHHH
Q 033983 80 GISLSVDQWNTLRDHVEEIN 99 (106)
Q Consensus 80 GISL~~eqw~~L~~~~~~Id 99 (106)
-.||+|+||..|++.+..|.
T Consensus 261 ~~SL~P~ef~~lv~~ir~i~ 280 (385)
T 1vli_A 261 SFALNPDELKEMVDGIRKTE 280 (385)
T ss_dssp TTSBCHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999
No 41
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=23.66 E-value=59 Score=22.83 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.3
Q ss_pred eecCHHHHHHHHHhHHHHHHHhhc
Q 033983 81 ISLSVDQWNTLRDHVEEINKALGD 104 (106)
Q Consensus 81 ISL~~eqw~~L~~~~~~Id~ai~~ 104 (106)
|-||..+|+.|...+..+.+.+..
T Consensus 32 iELTe~E~~~f~~Ll~qL~~~~~~ 55 (127)
T 2it9_A 32 IELDKSEWKILVEVVMELCDQYKL 55 (127)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998887754
No 42
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=22.91 E-value=30 Score=26.73 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=22.6
Q ss_pred ceecCHHHHHHHHHhHHHHHHHhhc
Q 033983 80 GISLSVDQWNTLRDHVEEINKALGD 104 (106)
Q Consensus 80 GISL~~eqw~~L~~~~~~Id~ai~~ 104 (106)
--||+++++..|++.+..|+.++..
T Consensus 252 ~~sl~p~~l~~lv~~ir~i~~a~g~ 276 (292)
T 1o60_A 252 PSALPLSALEGFVSQMKAIDDLVKS 276 (292)
T ss_dssp TTCEEGGGHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4688999999999999999999875
No 43
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=22.77 E-value=1.1e+02 Score=19.56 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=20.9
Q ss_pred eEEEEeeeCCceEEEeEEEEecCCe
Q 033983 49 RRVSVRNWQGKVWVDIREFYVKEGK 73 (106)
Q Consensus 49 rrVtV~~FkG~~~VdIREyY~kdGe 73 (106)
..|.|-+|++-.-+.+|+||.+.++
T Consensus 91 ~~~~v~~v~dGkI~~~~~y~~~~~~ 115 (128)
T 3en8_A 91 YTVSIMEFRNGKVVHETQYFSDPFE 115 (128)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCC
T ss_pred EEEEEEEEcCCEEEEEEEeCCCCCC
Confidence 4578888899999999999997654
No 44
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=22.59 E-value=33 Score=26.25 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=22.3
Q ss_pred ceecCHHHHHHHHHhHHHHHHHhhc
Q 033983 80 GISLSVDQWNTLRDHVEEINKALGD 104 (106)
Q Consensus 80 GISL~~eqw~~L~~~~~~Id~ai~~ 104 (106)
--||+++++..|++.+..|+.++..
T Consensus 235 ~qsl~p~~l~~l~~~i~~~~~~~g~ 259 (267)
T 2nwr_A 235 STQLPLSQLEGIIEAILEIREVASK 259 (267)
T ss_dssp TTCEEGGGHHHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4578999999999999999999874
No 45
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=22.25 E-value=32 Score=26.31 Aligned_cols=25 Identities=4% Similarity=0.139 Sum_probs=18.6
Q ss_pred ceecCHHHHHHHHHhHHHHHHHhhc
Q 033983 80 GISLSVDQWNTLRDHVEEINKALGD 104 (106)
Q Consensus 80 GISL~~eqw~~L~~~~~~Id~ai~~ 104 (106)
--||+++++..|++.+..|+.++..
T Consensus 249 ~~sl~p~~l~~lv~~i~~~~~~~g~ 273 (280)
T 2qkf_A 249 PSALPLHLLEDFLIRIKALDDLIKS 273 (280)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4679999999999999999999874
No 46
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*
Probab=21.88 E-value=78 Score=21.77 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=19.0
Q ss_pred ceEEEeEEEEecCCeecCcccceecCHHHHH
Q 033983 59 KVWVDIREFYVKEGKKFPGKKGISLSVDQWN 89 (106)
Q Consensus 59 ~~~VdIREyY~kdGe~~PgKKGISL~~eqw~ 89 (106)
.++||+|+ ++=.+--.||. |.++..++.
T Consensus 54 ~~iIDVR~-~Ey~~GHIpGA--iniP~~~l~ 81 (169)
T 3f4a_A 54 FQVVDVRG-SDYMGGHIKDG--WHYAYSRLK 81 (169)
T ss_dssp EEEEECCS-TTCTTCEETTC--EECCHHHHH
T ss_pred EEEEECCc-hHHccCcCCCC--EECCHHHhh
Confidence 67999998 55344456884 777766543
No 47
>2rfw_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycosidase; 1.60A {Melanocarpus albomyces} PDB: 2rfy_A* 2rfz_A* 2rg0_A*
Probab=21.77 E-value=2.6e+02 Score=23.26 Aligned_cols=37 Identities=11% Similarity=0.457 Sum_probs=27.3
Q ss_pred CceEEEEeeeCCceEEEeEEEEecCCeecCcc----cce----ecCHH
Q 033983 47 KNRRVSVRNWQGKVWVDIREFYVKEGKKFPGK----KGI----SLSVD 86 (106)
Q Consensus 47 ~~rrVtV~~FkG~~~VdIREyY~kdGe~~PgK----KGI----SL~~e 86 (106)
.+++-.|..|-+ ..||-||..+|+..|-. -|+ ||+.+
T Consensus 283 ~k~fTVVTQFit---~EIrR~YVQ~GkvI~n~~~~~~g~~~~nSItd~ 327 (430)
T 2rfw_A 283 SRKFTVVSRFEE---NKLSQYFIQDGRKIEIPPPTWEGMPNSSEITPE 327 (430)
T ss_dssp SSEEEEEEEECS---SCEEEEEEETTEEEECCCCCSTTSCSSSSBSHH
T ss_pred CCCeEEEeeccc---ceeEEEEEECCEEEeCCCcccCCCCCCCccCHH
Confidence 455566777988 89999999999877543 243 78775
No 48
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=20.39 E-value=86 Score=23.97 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=23.4
Q ss_pred eecCHHHHHHHHHhHHHHHHHhhcC
Q 033983 81 ISLSVDQWNTLRDHVEEINKALGDN 105 (106)
Q Consensus 81 ISL~~eqw~~L~~~~~~Id~ai~~~ 105 (106)
+.|+.+|-+.|...++.|.+.|++|
T Consensus 268 l~L~~~E~~~l~~s~~~lk~~i~~l 292 (294)
T 2x0j_A 268 IKLSDEEIEKLRNSAKILRERLEEL 292 (294)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999887
Done!