BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033987
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2
Length = 283
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/94 (77%), Positives = 81/94 (86%), Gaps = 1/94 (1%)
Query: 9 FRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGAL 68
R SS A R+ PRA+S+ AVEDGS+ +TDT+PTPKVIID DSDPDATIVEIT GDRLG L
Sbjct: 45 LRLSSPAVRV-PRAASSAAVEDGSSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDL 103
Query: 69 LDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 102
LDTMNALKNLGLNVVKA+V LDS+GKH K AITK
Sbjct: 104 LDTMNALKNLGLNVVKASVCLDSTGKHIKLAITK 137
>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. indica GN=OsI_027381 PE=1 SV=2
Length = 283
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/94 (77%), Positives = 81/94 (86%), Gaps = 1/94 (1%)
Query: 9 FRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGAL 68
R SS A R+ PRA+S+ AVEDGS+ +TDT+PTPKVIID DSDPDATIVEIT GDRLG L
Sbjct: 45 LRLSSPAVRV-PRAASSAAVEDGSSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDL 103
Query: 69 LDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 102
LDTMNALKNLGLNVVKA+V LDS+GKH K AITK
Sbjct: 104 LDTMNALKNLGLNVVKASVCLDSTGKHIKLAITK 137
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 87
P+V+ID ++ T++E+ DR G L D AL NL L + A +
Sbjct: 845 PRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKI 890
>sp|Q1B3F3|MOAA_MYCSS Cyclic pyranopterin monophosphate synthase OS=Mycobacterium sp.
(strain MCS) GN=moaA PE=3 SV=1
Length = 350
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 25/48 (52%)
Query: 43 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90
+V + LDS A IT DRLG +L + A K GL VK N LD
Sbjct: 138 RVNVSLDSVDAAHFARITRRDRLGDVLAGLAAAKEAGLTPVKVNAVLD 185
>sp|A1ULP7|MOAA_MYCSK Cyclic pyranopterin monophosphate synthase OS=Mycobacterium sp.
(strain KMS) GN=moaA PE=3 SV=1
Length = 350
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 25/48 (52%)
Query: 43 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90
+V + LDS A IT DRLG +L + A K GL VK N LD
Sbjct: 138 RVNVSLDSVDAAHFARITRRDRLGDVLAGLAAAKEAGLTPVKVNAVLD 185
>sp|A3Q648|MOAA_MYCSJ Cyclic pyranopterin monophosphate synthase OS=Mycobacterium sp.
(strain JLS) GN=moaA PE=3 SV=1
Length = 350
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 25/48 (52%)
Query: 43 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90
+V + LDS A IT DRLG +L + A K GL VK N LD
Sbjct: 138 RVNVSLDSVDAAHFARITRRDRLGDVLAGLAAAKEAGLTPVKVNAVLD 185
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 27 AVEDGSNGDTDT------IPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGL 80
+ED S+ T +P P+V+ID + T++E+ DR G L D +AL + L
Sbjct: 836 GIEDASHHSTSRRMRAIHVP-PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASL 894
Query: 81 NVVKANV 87
+ A++
Sbjct: 895 QISSAHI 901
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 87
PKVI++ T++E++ DR G L A+ L LN+ A+V
Sbjct: 837 PKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHV 882
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 38 TIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 87
T+P P+VI+D + T++EI DR G L AL ++ + + A V
Sbjct: 823 TVP-PRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARV 871
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 87
P V ID D+ DAT+VE + DR G L L + L++ A++
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHI 879
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 87
P V ID D+ DAT+VE + DR G L L + L++ A++
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHI 879
>sp|B2HFA4|MOAA_MYCMM Cyclic pyranopterin monophosphate synthase OS=Mycobacterium marinum
(strain ATCC BAA-535 / M) GN=moaA PE=3 SV=1
Length = 360
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 43 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHN----- 96
+V + LD+ A IT DRL +LD + + GL VK N LD +G+ +
Sbjct: 144 RVNVSLDTVDRAHFAAITRRDRLTDVLDGLAGARAAGLTPVKVNAVLDPETGRQDVVELL 203
Query: 97 KFAITKAYVL 106
+F + + Y L
Sbjct: 204 RFCLEQGYQL 213
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 41 TPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 87
TP V++D ++ +T+VE + DR G L + + GL+++ A++
Sbjct: 830 TPAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHI 876
>sp|Q2UGQ2|EFGM_ASPOR Elongation factor G, mitochondrial OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=mef1 PE=3 SV=1
Length = 799
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-----DSSGKHNKF 98
I E+ GD++GA +D+M+ + G+ + A F D GK NK+
Sbjct: 129 IHEVRGGDKVGAKMDSMDLEREKGITIQSAATFCDWVKKDEDGKENKY 176
>sp|B8N9M2|EFGM_ASPFN Elongation factor G, mitochondrial OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=mef1 PE=3 SV=1
Length = 799
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-----DSSGKHNKF 98
I E+ GD++GA +D+M+ + G+ + A F D GK NK+
Sbjct: 129 IHEVRGGDKVGAKMDSMDLEREKGITIQSAATFCDWVKKDEDGKENKY 176
>sp|A0PKZ7|MOAA_MYCUA Cyclic pyranopterin monophosphate synthase OS=Mycobacterium
ulcerans (strain Agy99) GN=moaA PE=3 SV=1
Length = 360
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 43 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHN----- 96
+V + LD+ A +T DRL +LD + + GL VK N LD +G+ +
Sbjct: 144 RVNVSLDTVDRAHFAAVTRRDRLTDVLDGLAGARAAGLTPVKVNAVLDPETGRQDVVELL 203
Query: 97 KFAITKAYVL 106
+F + + Y L
Sbjct: 204 RFCLEQGYQL 213
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 87
PKV I+ T++E++ DR G L A+ L LN+ A+V
Sbjct: 835 PKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHV 880
>sp|Q2Y5Q1|GLND_NITMU [Protein-PII] uridylyltransferase OS=Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849) GN=glnD PE=3 SV=1
Length = 887
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 41 TPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100
TP+V I+ D ++ IT GD+ G L L GLNV A + + F +
Sbjct: 781 TPQVSIEPDDSGAYYVLSITAGDQSGLLSRIAQVLVRFGLNVHSARINTLGERAEDTFLV 840
Query: 101 T 101
T
Sbjct: 841 T 841
>sp|Q0CLP3|EFGM_ASPTN Elongation factor G, mitochondrial OS=Aspergillus terreus (strain
NIH 2624 / FGSC A1156) GN=mef1 PE=3 SV=1
Length = 802
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-----DSSGKHNKFAI 100
I E+ GD++GA +D+M+ + G+ + A F D GK +K+ I
Sbjct: 132 IHEVRGGDKVGAKMDSMDLEREKGITIQSAATFCDWVKKDKEGKEHKYHI 181
>sp|Q21WR0|GCP_RHOFD Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
BAA-621 / T118) GN=gcp PE=3 SV=2
Length = 354
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 9 FRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGAL 68
F F+ T ++ +A A +DGS + +P +V+ DL + A IVE+ + AL
Sbjct: 213 FSFAGLKTAVMVQAKKLAAAQDGS---VEALPV-QVLADLAASTQAAIVEVLVKKSMTAL 268
Query: 69 LDTMNALKNL 78
T +LK L
Sbjct: 269 SQT--SLKRL 276
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 87
P+V I+ T++E++ DR G L + A+ L LN+ A+V
Sbjct: 836 PEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHV 881
>sp|A4G6T3|PLSX_HERAR Phosphate acyltransferase OS=Herminiimonas arsenicoxydans GN=plsX
PE=3 SV=1
Length = 357
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 31 GSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKA 85
G +G TIP I ++S+PDA ++ + D+L A L A ++ L+VV A
Sbjct: 12 GDHGPAVTIPA--AISFVESEPDAELILVGLADQLWAELKKHKAGEHPRLSVVNA 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,975,793
Number of Sequences: 539616
Number of extensions: 1371020
Number of successful extensions: 3966
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3936
Number of HSP's gapped (non-prelim): 38
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)