Query 033987
Match_columns 106
No_of_seqs 100 out of 211
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 08:32:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04895 ACT_ACR_1 ACT domain-c 99.9 1.3E-23 2.8E-28 139.6 7.9 51 54-104 1-51 (72)
2 cd04897 ACT_ACR_3 ACT domain-c 99.9 9.6E-23 2.1E-27 136.5 7.8 51 54-104 1-51 (75)
3 PRK01759 glnD PII uridylyl-tra 99.8 1.4E-20 3E-25 167.0 9.2 67 37-104 767-833 (854)
4 PRK05007 PII uridylyl-transfer 99.8 2E-20 4.3E-25 166.5 9.5 67 37-104 792-858 (884)
5 cd04896 ACT_ACR-like_3 ACT dom 99.8 2.6E-20 5.5E-25 124.8 7.2 48 55-103 1-50 (75)
6 COG2844 GlnD UTP:GlnB (protein 99.7 2.2E-17 4.7E-22 148.2 7.9 67 37-104 775-841 (867)
7 TIGR01693 UTase_glnD [Protein- 99.7 8.5E-17 1.8E-21 141.9 9.8 67 37-104 763-829 (850)
8 PRK04374 PII uridylyl-transfer 99.7 1.1E-16 2.3E-21 143.1 9.8 67 37-104 780-846 (869)
9 PRK00275 glnD PII uridylyl-tra 99.7 3.3E-16 7.2E-21 140.0 9.8 67 37-104 798-864 (895)
10 cd04925 ACT_ACR_2 ACT domain-c 99.6 6.2E-16 1.3E-20 100.4 7.2 50 55-104 1-50 (74)
11 PRK03381 PII uridylyl-transfer 99.6 9.1E-16 2E-20 135.3 9.5 67 37-104 691-757 (774)
12 cd04927 ACT_ACR-like_2 Second 99.6 1.6E-15 3.4E-20 99.4 7.8 49 56-104 2-51 (76)
13 PRK05092 PII uridylyl-transfer 99.6 1.6E-15 3.4E-20 135.5 10.0 67 37-104 827-893 (931)
14 cd04900 ACT_UUR-like_1 ACT dom 99.6 4.1E-15 8.8E-20 95.5 7.5 51 54-104 1-52 (73)
15 PRK03059 PII uridylyl-transfer 99.6 3.5E-15 7.6E-20 133.0 9.5 66 37-103 770-835 (856)
16 TIGR01693 UTase_glnD [Protein- 99.4 9.7E-13 2.1E-17 116.4 9.6 63 42-104 656-719 (850)
17 PRK01759 glnD PII uridylyl-tra 99.4 1E-12 2.2E-17 117.3 9.5 63 42-104 665-728 (854)
18 cd04926 ACT_ACR_4 C-terminal 99.4 4.2E-12 9E-17 81.8 7.7 50 55-104 2-51 (72)
19 PRK05007 PII uridylyl-transfer 99.3 4.1E-12 8.9E-17 113.7 9.6 63 42-104 689-752 (884)
20 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 2E-11 4.3E-16 75.8 7.5 50 55-104 1-50 (70)
21 PRK05092 PII uridylyl-transfer 99.0 1.4E-09 3.1E-14 97.7 9.4 63 42-104 720-783 (931)
22 cd04928 ACT_TyrKc Uncharacteri 99.0 2.7E-09 5.8E-14 70.5 7.1 48 57-104 4-52 (68)
23 cd04873 ACT_UUR-ACR-like ACT d 98.9 5.6E-09 1.2E-13 63.8 7.4 50 55-104 1-50 (70)
24 PRK00275 glnD PII uridylyl-tra 98.9 1.1E-08 2.3E-13 92.3 9.3 63 42-104 689-755 (895)
25 PRK03381 PII uridylyl-transfer 98.8 1.5E-08 3.2E-13 90.0 9.4 64 40-104 586-649 (774)
26 PF01842 ACT: ACT domain; Int 98.8 3.5E-08 7.5E-13 59.6 6.8 49 55-103 1-51 (66)
27 PRK03059 PII uridylyl-transfer 98.6 2E-07 4.4E-12 83.8 8.9 63 42-104 666-729 (856)
28 PRK04374 PII uridylyl-transfer 98.5 9.3E-07 2E-11 79.9 9.5 63 42-104 677-741 (869)
29 PRK00227 glnD PII uridylyl-tra 98.4 2.3E-07 5E-12 82.5 4.0 54 40-103 623-676 (693)
30 PF13740 ACT_6: ACT domain; PD 98.3 4.5E-06 9.8E-11 54.1 6.8 47 55-101 3-49 (76)
31 cd04870 ACT_PSP_1 CT domains f 98.1 6.6E-06 1.4E-10 52.8 5.5 45 56-100 1-45 (75)
32 cd04894 ACT_ACR-like_1 ACT dom 98.1 7.9E-06 1.7E-10 54.8 4.7 49 55-103 1-49 (69)
33 cd04875 ACT_F4HF-DF N-terminal 98.0 1.2E-05 2.5E-10 51.2 5.2 43 56-100 1-43 (74)
34 cd04893 ACT_GcvR_1 ACT domains 97.9 2.9E-05 6.3E-10 50.5 5.7 40 55-94 2-41 (77)
35 cd04869 ACT_GcvR_2 ACT domains 97.9 3.3E-05 7.3E-10 49.1 5.6 45 56-100 1-47 (81)
36 PF13291 ACT_4: ACT domain; PD 97.9 9.6E-05 2.1E-09 47.3 7.0 39 53-91 5-43 (80)
37 cd04872 ACT_1ZPV ACT domain pr 97.7 8E-05 1.7E-09 49.0 4.7 41 55-95 2-42 (88)
38 PRK00194 hypothetical protein; 97.7 4.6E-05 1E-09 49.9 3.6 41 54-94 3-43 (90)
39 cd04877 ACT_TyrR N-terminal AC 97.6 0.00013 2.8E-09 46.5 5.0 34 57-90 3-36 (74)
40 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00042 9.2E-09 43.1 6.8 35 57-91 2-36 (74)
41 COG2844 GlnD UTP:GlnB (protein 97.5 0.0003 6.5E-09 64.6 7.5 63 42-104 672-735 (867)
42 cd04878 ACT_AHAS N-terminal AC 97.5 0.00094 2E-08 39.8 7.0 46 57-102 3-49 (72)
43 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.5 0.00086 1.9E-08 40.7 6.7 46 56-101 2-48 (79)
44 cd04886 ACT_ThrD-II-like C-ter 97.4 0.00078 1.7E-08 40.3 6.0 34 57-90 1-34 (73)
45 cd04879 ACT_3PGDH-like ACT_3PG 97.4 0.00087 1.9E-08 39.8 6.1 44 57-100 2-47 (71)
46 cd02116 ACT ACT domains are co 97.3 0.0017 3.7E-08 35.0 6.3 46 57-102 1-47 (60)
47 cd04889 ACT_PDH-BS-like C-term 97.2 0.0016 3.6E-08 38.9 6.1 46 57-102 1-47 (56)
48 PRK11589 gcvR glycine cleavage 97.2 0.00059 1.3E-08 52.3 4.9 46 55-100 96-143 (190)
49 cd04908 ACT_Bt0572_1 N-termina 97.2 0.0012 2.6E-08 41.1 5.5 38 56-93 3-40 (66)
50 PRK11589 gcvR glycine cleavage 97.2 0.00058 1.3E-08 52.3 4.8 50 51-100 5-54 (190)
51 cd04903 ACT_LSD C-terminal ACT 97.2 0.0031 6.7E-08 37.6 6.6 33 57-89 2-34 (71)
52 cd04874 ACT_Af1403 N-terminal 97.1 0.0039 8.4E-08 37.4 6.9 36 56-91 2-37 (72)
53 cd04876 ACT_RelA-SpoT ACT dom 97.1 0.004 8.6E-08 35.4 6.3 37 57-93 1-37 (71)
54 cd04888 ACT_PheB-BS C-terminal 97.0 0.0028 6.1E-08 39.3 5.4 34 57-90 3-36 (76)
55 cd04882 ACT_Bt0572_2 C-termina 97.0 0.0026 5.7E-08 38.1 5.1 36 56-91 1-36 (65)
56 PRK06027 purU formyltetrahydro 96.9 0.0031 6.8E-08 50.6 6.6 41 52-92 4-46 (286)
57 COG3830 ACT domain-containing 96.6 0.0026 5.7E-08 44.6 3.7 31 54-84 3-33 (90)
58 cd04909 ACT_PDH-BS C-terminal 96.6 0.01 2.2E-07 36.5 6.0 45 57-101 4-50 (69)
59 PRK08577 hypothetical protein; 96.5 0.023 5.1E-07 40.4 7.8 42 50-91 52-93 (136)
60 cd04884 ACT_CBS C-terminal ACT 96.4 0.019 4.1E-07 36.0 6.3 34 57-90 2-35 (72)
61 PRK13011 formyltetrahydrofolat 96.4 0.0096 2.1E-07 47.9 5.9 44 55-100 8-51 (286)
62 cd04905 ACT_CM-PDT C-terminal 96.3 0.032 7E-07 35.8 7.2 46 55-100 2-48 (80)
63 TIGR00655 PurU formyltetrahydr 96.3 0.01 2.2E-07 47.7 5.7 35 56-90 2-36 (280)
64 PRK13010 purU formyltetrahydro 96.3 0.0079 1.7E-07 48.6 5.1 35 54-88 9-43 (289)
65 cd04902 ACT_3PGDH-xct C-termin 96.1 0.02 4.4E-07 34.9 5.0 42 58-99 3-46 (73)
66 PRK04435 hypothetical protein; 96.0 0.032 7E-07 40.8 6.8 47 45-91 60-106 (147)
67 cd04901 ACT_3PGDH C-terminal A 96.0 0.0049 1.1E-07 37.6 2.1 36 58-93 3-38 (69)
68 PRK11092 bifunctional (p)ppGpp 96.0 0.024 5.3E-07 51.0 6.9 52 43-94 614-666 (702)
69 cd04883 ACT_AcuB C-terminal AC 95.8 0.068 1.5E-06 32.8 6.7 35 55-89 2-36 (72)
70 TIGR00119 acolac_sm acetolacta 95.8 0.057 1.2E-06 40.5 7.2 36 56-91 3-38 (157)
71 TIGR00691 spoT_relA (p)ppGpp s 95.7 0.037 8E-07 49.4 7.0 52 43-94 598-650 (683)
72 PRK07334 threonine dehydratase 95.7 0.045 9.8E-07 45.1 7.0 37 54-90 326-362 (403)
73 COG0317 SpoT Guanosine polypho 95.6 0.049 1.1E-06 49.5 7.3 56 43-98 615-671 (701)
74 PRK10872 relA (p)ppGpp synthet 95.5 0.068 1.5E-06 48.7 8.1 48 44-91 655-703 (743)
75 PRK00227 glnD PII uridylyl-tra 95.5 0.048 1.1E-06 49.1 6.9 47 55-102 547-594 (693)
76 COG2716 GcvR Glycine cleavage 95.3 0.0077 1.7E-07 46.7 1.1 50 51-100 2-51 (176)
77 CHL00100 ilvH acetohydroxyacid 95.3 0.069 1.5E-06 40.7 6.3 34 56-89 4-37 (174)
78 PRK11895 ilvH acetolactate syn 95.2 0.11 2.4E-06 39.1 7.1 36 56-91 4-39 (161)
79 PRK08178 acetolactate synthase 94.7 0.18 3.8E-06 35.6 6.7 44 48-92 3-46 (96)
80 COG2716 GcvR Glycine cleavage 94.5 0.035 7.6E-07 43.1 2.9 35 50-84 88-122 (176)
81 cd04904 ACT_AAAH ACT domain of 94.2 0.093 2E-06 33.7 4.0 28 57-84 3-30 (74)
82 cd04898 ACT_ACR-like_4 ACT dom 94.2 0.015 3.2E-07 40.0 0.2 32 57-88 3-34 (77)
83 PRK06737 acetolactate synthase 93.9 0.32 6.9E-06 32.7 6.2 33 56-88 4-36 (76)
84 cd04931 ACT_PAH ACT domain of 93.8 0.18 3.9E-06 34.4 5.0 54 47-100 7-61 (90)
85 PRK13562 acetolactate synthase 93.8 0.13 2.7E-06 35.6 4.2 35 56-90 4-38 (84)
86 cd04871 ACT_PSP_2 ACT domains 93.8 0.043 9.3E-07 36.5 1.8 29 56-84 1-30 (84)
87 cd04880 ACT_AAAH-PDT-like ACT 93.5 0.15 3.3E-06 32.1 3.9 41 60-100 5-46 (75)
88 PRK11152 ilvM acetolactate syn 93.1 0.17 3.7E-06 33.9 3.9 34 56-89 5-38 (76)
89 PRK08818 prephenate dehydrogen 92.0 0.51 1.1E-05 39.5 6.3 46 54-100 295-341 (370)
90 COG4747 ACT domain-containing 91.6 0.4 8.6E-06 36.1 4.7 39 56-94 5-43 (142)
91 PF13840 ACT_7: ACT domain ; P 91.3 0.51 1.1E-05 29.7 4.3 35 52-86 4-42 (65)
92 cd04929 ACT_TPH ACT domain of 91.2 0.41 8.9E-06 31.4 3.9 42 59-100 5-47 (74)
93 cd04891 ACT_AK-LysC-DapG-like_ 91.2 1.1 2.3E-05 25.6 5.4 28 61-88 8-35 (61)
94 cd04885 ACT_ThrD-I Tandem C-te 91.2 0.88 1.9E-05 28.4 5.3 30 58-88 2-31 (68)
95 COG0788 PurU Formyltetrahydrof 90.7 0.61 1.3E-05 38.7 5.4 37 53-89 6-42 (287)
96 PRK11899 prephenate dehydratas 90.5 0.56 1.2E-05 37.9 4.9 47 54-100 194-241 (279)
97 PRK06382 threonine dehydratase 90.3 0.49 1.1E-05 39.2 4.5 37 51-87 327-363 (406)
98 PF13710 ACT_5: ACT domain; PD 90.1 1.3 2.7E-05 28.1 5.4 27 63-89 1-27 (63)
99 TIGR00719 sda_beta L-serine de 90.0 1.1 2.4E-05 34.2 6.0 53 43-95 134-191 (208)
100 cd04906 ACT_ThrD-I_1 First of 89.8 1.9 4.1E-05 28.2 6.2 27 56-84 3-29 (85)
101 cd04913 ACT_AKii-LysC-BS-like_ 89.1 1.3 2.7E-05 26.4 4.6 26 62-87 10-35 (75)
102 COG4747 ACT domain-containing 89.0 1.4 3E-05 33.2 5.7 38 55-92 70-107 (142)
103 cd04930 ACT_TH ACT domain of t 88.7 1.1 2.3E-05 31.9 4.7 32 54-85 41-72 (115)
104 PRK06349 homoserine dehydrogen 88.7 1.6 3.5E-05 36.6 6.4 49 55-103 349-397 (426)
105 cd04868 ACT_AK-like ACT domain 88.0 1.1 2.5E-05 25.0 3.7 32 56-87 2-36 (60)
106 PRK11790 D-3-phosphoglycerate 86.9 1 2.2E-05 37.7 4.3 46 52-98 337-382 (409)
107 COG0077 PheA Prephenate dehydr 86.6 1.1 2.4E-05 36.7 4.3 48 53-100 193-241 (279)
108 PRK10622 pheA bifunctional cho 86.1 3.3 7.2E-05 34.8 6.9 47 54-100 297-344 (386)
109 TIGR01127 ilvA_1Cterm threonin 85.3 1.2 2.7E-05 36.1 3.9 34 53-86 304-337 (380)
110 cd04919 ACT_AK-Hom3_2 ACT doma 84.8 5.8 0.00013 23.7 5.9 35 55-89 2-39 (66)
111 COG1707 ACT domain-containing 84.0 2.3 5E-05 33.8 4.7 36 57-92 5-40 (218)
112 cd04922 ACT_AKi-HSDH-ThrA_2 AC 83.9 2.3 5E-05 25.2 3.8 33 55-87 2-37 (66)
113 COG2150 Predicted regulator of 83.7 2.3 5.1E-05 32.9 4.6 35 53-87 92-128 (167)
114 PRK08198 threonine dehydratase 81.0 3.2 6.9E-05 34.1 4.7 39 50-88 323-361 (404)
115 PRK06545 prephenate dehydrogen 80.2 2.8 6.2E-05 34.0 4.2 38 52-89 288-325 (359)
116 cd04892 ACT_AK-like_2 ACT doma 79.3 3.8 8.3E-05 23.3 3.5 32 56-87 2-36 (65)
117 PRK10820 DNA-binding transcrip 78.6 3 6.5E-05 35.8 4.0 35 57-91 3-37 (520)
118 cd04924 ACT_AK-Arch_2 ACT doma 77.0 6.1 0.00013 23.3 4.0 35 55-89 2-39 (66)
119 cd04890 ACT_AK-like_1 ACT doma 76.8 5.5 0.00012 23.8 3.8 24 62-85 11-34 (62)
120 cd04937 ACT_AKi-DapG-BS_2 ACT 75.2 6.9 0.00015 23.9 4.0 29 55-83 2-33 (64)
121 cd04932 ACT_AKiii-LysC-EC_1 AC 73.5 6.5 0.00014 25.5 3.7 31 55-85 2-35 (75)
122 cd04916 ACT_AKiii-YclM-BS_2 AC 71.5 18 0.00039 21.2 5.8 35 55-89 2-39 (66)
123 PRK11898 prephenate dehydratas 71.5 9.9 0.00022 30.5 5.1 45 54-100 196-244 (283)
124 cd04921 ACT_AKi-HSDH-ThrA-like 71.3 8.7 0.00019 23.8 3.8 35 55-89 2-39 (80)
125 TIGR01270 Trp_5_monoox tryptop 69.3 9.6 0.00021 33.5 4.8 35 50-84 27-61 (464)
126 cd04923 ACT_AK-LysC-DapG-like_ 67.9 13 0.00028 21.4 3.9 31 56-86 2-35 (63)
127 PRK13581 D-3-phosphoglycerate 67.6 11 0.00024 32.6 4.8 47 43-89 438-487 (526)
128 PLN02317 arogenate dehydratase 66.9 10 0.00022 32.4 4.4 33 54-86 283-315 (382)
129 PRK06635 aspartate kinase; Rev 64.0 12 0.00026 30.6 4.2 34 52-85 338-374 (404)
130 cd04912 ACT_AKiii-LysC-EC-like 63.9 15 0.00033 23.2 3.9 31 55-85 2-35 (75)
131 cd04936 ACT_AKii-LysC-BS-like_ 63.4 18 0.0004 20.8 3.9 25 62-86 11-35 (63)
132 cd04935 ACT_AKiii-DAPDC_1 ACT 63.2 9 0.0002 24.8 2.7 25 61-85 11-35 (75)
133 TIGR01268 Phe4hydrox_tetr phen 63.0 15 0.00032 32.1 4.7 45 54-100 16-63 (436)
134 PRK08526 threonine dehydratase 62.8 13 0.00029 31.1 4.4 37 51-87 323-359 (403)
135 COG4492 PheB ACT domain-contai 56.7 13 0.00028 28.4 2.9 31 56-86 74-104 (150)
136 TIGR01327 PGDH D-3-phosphoglyc 55.6 14 0.00031 31.9 3.4 46 51-96 448-495 (525)
137 TIGR00656 asp_kin_monofn aspar 55.5 23 0.00051 28.9 4.5 33 52-84 335-370 (401)
138 COG3283 TyrR Transcriptional r 54.0 13 0.00029 32.9 3.0 35 57-91 3-37 (511)
139 cd04933 ACT_AK1-AT_1 ACT domai 53.9 16 0.00035 24.2 2.8 25 61-85 11-35 (78)
140 TIGR02079 THD1 threonine dehyd 53.0 33 0.00071 28.7 5.1 36 51-86 322-357 (409)
141 COG2061 ACT-domain-containing 51.5 15 0.00033 28.5 2.7 32 57-88 8-39 (170)
142 PRK08639 threonine dehydratase 50.3 32 0.00069 28.7 4.6 35 51-85 333-367 (420)
143 PF05088 Bac_GDH: Bacterial NA 47.3 35 0.00077 34.1 5.0 36 50-85 13-48 (1528)
144 KOG2663 Acetolactate synthase, 46.8 20 0.00042 30.2 2.8 36 53-88 76-111 (309)
145 cd04920 ACT_AKiii-DAPDC_2 ACT 44.8 52 0.0011 20.2 3.9 27 56-82 2-31 (63)
146 COG3978 Acetolactate synthase 44.4 51 0.0011 23.1 4.2 39 56-94 5-45 (86)
147 PF05117 DUF695: Family of unk 44.3 51 0.0011 22.9 4.3 34 69-103 66-99 (136)
148 cd01423 MGS_CPS_I_III Methylgl 43.8 29 0.00063 23.5 2.9 27 56-83 4-30 (116)
149 COG0440 IlvH Acetolactate synt 43.7 24 0.00052 27.1 2.7 32 56-87 6-37 (163)
150 cd04934 ACT_AK-Hom3_1 CT domai 41.7 25 0.00055 22.6 2.2 23 63-85 13-35 (73)
151 cd04918 ACT_AK1-AT_2 ACT domai 41.0 83 0.0018 19.2 4.6 34 56-89 3-38 (65)
152 PRK08210 aspartate kinase I; R 40.9 57 0.0012 26.8 4.7 33 52-84 337-372 (403)
153 PRK06635 aspartate kinase; Rev 40.5 71 0.0015 26.1 5.1 34 54-87 262-296 (404)
154 PRK08210 aspartate kinase I; R 40.4 55 0.0012 26.9 4.5 37 52-88 269-306 (403)
155 cd04917 ACT_AKiii-LysC-EC_2 AC 37.2 93 0.002 18.6 4.4 27 55-81 2-31 (64)
156 TIGR00657 asp_kinases aspartat 37.1 65 0.0014 26.9 4.5 35 52-86 376-413 (441)
157 cd04914 ACT_AKi-DapG-BS_1 ACT 36.8 38 0.00083 21.1 2.4 24 63-86 11-34 (67)
158 COG2902 NAD-specific glutamate 36.4 63 0.0014 32.7 4.8 44 42-85 74-119 (1592)
159 cd01421 IMPCH Inosine monophos 36.1 59 0.0013 25.3 3.8 25 56-83 4-28 (187)
160 cd07247 SgaA_N_like N-terminal 34.4 1.2E+02 0.0026 19.0 6.2 47 52-104 60-106 (114)
161 TIGR00656 asp_kin_monofn aspar 34.3 73 0.0016 26.0 4.3 34 52-85 258-294 (401)
162 cd07253 Glo_EDI_BRP_like_2 Thi 33.5 1.2E+02 0.0026 18.9 4.8 37 68-104 79-116 (125)
163 PF03551 PadR: Transcriptional 33.3 1.2E+02 0.0027 18.8 5.1 39 64-103 30-68 (75)
164 PRK06291 aspartate kinase; Pro 32.9 76 0.0016 26.9 4.3 35 52-86 319-356 (465)
165 PRK09224 threonine dehydratase 31.3 2.7E+02 0.0057 24.2 7.4 32 51-84 325-356 (504)
166 PRK12483 threonine dehydratase 30.8 2.4E+02 0.0052 24.9 7.1 33 51-85 342-374 (521)
167 PRK08841 aspartate kinase; Val 29.3 97 0.0021 26.0 4.3 33 52-84 316-348 (392)
168 PRK07431 aspartate kinase; Pro 29.2 99 0.0021 26.9 4.5 35 52-86 517-554 (587)
169 PF14085 DUF4265: Domain of un 29.2 1.4E+02 0.003 20.9 4.5 36 50-85 49-84 (117)
170 PF02319 E2F_TDP: E2F/DP famil 28.7 47 0.001 21.4 1.9 16 68-83 46-61 (71)
171 PF14830 Haemocyan_bet_s: Haem 28.2 15 0.00032 26.3 -0.6 18 63-81 53-70 (103)
172 cd08357 Glo_EDI_BRP_like_18 Th 27.5 1.4E+02 0.003 18.9 4.0 39 66-104 76-116 (125)
173 PF07524 Bromo_TP: Bromodomain 27.3 32 0.00069 22.0 0.9 22 60-82 54-75 (77)
174 PF05088 Bac_GDH: Bacterial NA 27.0 1.9E+02 0.0041 29.2 6.4 55 49-103 484-543 (1528)
175 COG0813 DeoD Purine-nucleoside 26.2 1.6E+02 0.0034 24.1 4.8 56 42-102 102-164 (236)
176 PF07530 PRE_C2HC: Associated 26.1 1.3E+02 0.0028 19.5 3.6 31 70-100 3-35 (68)
177 PRK09034 aspartate kinase; Rev 25.5 1.1E+02 0.0024 26.0 4.1 34 52-85 306-342 (454)
178 cd04915 ACT_AK-Ectoine_2 ACT d 25.1 1.7E+02 0.0038 18.0 6.4 33 55-87 3-37 (66)
179 cd01424 MGS_CPS_II Methylglyox 24.9 1.1E+02 0.0025 20.3 3.3 27 56-83 4-30 (110)
180 PF00903 Glyoxalase: Glyoxalas 24.5 1.8E+02 0.004 18.0 5.6 37 67-104 86-122 (128)
181 COG3603 Uncharacterized conser 24.0 1E+02 0.0022 23.1 3.2 49 38-90 52-100 (128)
182 cd04910 ACT_AK-Ectoine_1 ACT d 23.7 1.9E+02 0.0041 19.0 4.1 31 55-85 2-35 (71)
183 PF12681 Glyoxalase_2: Glyoxal 23.4 1.9E+02 0.0041 17.8 5.7 37 66-104 65-101 (108)
184 cd04907 ACT_ThrD-I_2 Second of 23.4 2.2E+02 0.0048 18.6 5.6 30 56-86 3-32 (81)
185 cd00532 MGS-like MGS-like doma 23.4 1.3E+02 0.0027 20.4 3.3 27 56-83 3-29 (112)
186 cd07238 Glo_EDI_BRP_like_5 Thi 23.4 1.4E+02 0.0031 18.8 3.4 42 57-104 61-102 (112)
187 smart00596 PRE_C2HC PRE_C2HC d 23.1 1.8E+02 0.0038 19.5 3.9 31 70-100 3-35 (69)
188 cd07263 Glo_EDI_BRP_like_16 Th 23.0 1.9E+02 0.0042 17.7 4.0 34 68-104 78-111 (119)
189 cd07261 Glo_EDI_BRP_like_11 Th 22.9 1.6E+02 0.0034 18.6 3.6 48 53-104 59-106 (114)
190 TIGR01124 ilvA_2Cterm threonin 22.8 4.2E+02 0.0091 23.1 7.1 32 51-84 322-353 (499)
191 PF09904 HTH_43: Winged helix- 22.7 1E+02 0.0023 21.6 2.8 32 67-101 37-68 (90)
192 PF13399 LytR_C: LytR cell env 22.3 2.2E+02 0.0048 18.1 5.2 32 54-85 4-35 (90)
193 PRK09084 aspartate kinase III; 22.3 1.5E+02 0.0032 25.3 4.2 35 52-86 304-341 (448)
194 PRK00907 hypothetical protein; 22.0 1.8E+02 0.0039 20.1 3.9 38 56-93 19-60 (92)
195 TIGR03433 padR_acidobact trans 21.9 2.1E+02 0.0046 19.0 4.2 39 64-103 38-76 (100)
196 cd07240 ED_TypeI_classII_N N-t 21.8 1.8E+02 0.0039 18.1 3.7 36 67-104 70-105 (117)
197 PF09198 T4-Gluco-transf: Bact 20.8 93 0.002 18.7 1.9 14 70-83 25-38 (38)
198 PRK07431 aspartate kinase; Pro 20.7 1.8E+02 0.0039 25.3 4.5 35 52-86 346-383 (587)
199 cd07245 Glo_EDI_BRP_like_9 Thi 20.7 2.1E+02 0.0045 17.2 3.9 34 68-104 75-108 (114)
200 PTZ00324 glutamate dehydrogena 20.0 2.9E+02 0.0062 26.9 5.9 62 42-103 217-283 (1002)
No 1
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.90 E-value=1.3e-23 Score=139.62 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=49.7
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
+|||||.++||||||++|+++|+++||+|++|||+|+|||++|+|||+|.+
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~ 51 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQL 51 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCC
Confidence 699999999999999999999999999999999999999999999999875
No 2
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.88 E-value=9.6e-23 Score=136.50 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=49.7
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
+|||||.++||||||++|+++|.++||+|+.|+|+|+||+++|+|||+|.+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~ 51 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKD 51 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCC
Confidence 699999999999999999999999999999999999999999999999875
No 3
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.83 E-value=1.4e-20 Score=167.02 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=64.1
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..+| |+|.|||++|+++|+|||.+.||||||++|+++|.++|++|+.|||+|.||+++|+|||+|.+
T Consensus 767 ~~~~-~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~ 833 (854)
T PRK01759 767 FHVK-TEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQ 833 (854)
T ss_pred CCCC-CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCC
Confidence 3567 899999999999999999999999999999999999999999999999999999999999864
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.83 E-value=2e-20 Score=166.53 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=64.1
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..+| |+|.|||++|+++|+|||.+.||||||++|+++|.++||+|+.|||+|.||+++|+|||+|.+
T Consensus 792 ~~~~-~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~ 858 (884)
T PRK05007 792 FNVP-TEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATAD 858 (884)
T ss_pred CCCC-CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCC
Confidence 4567 899999999999999999999999999999999999999999999999999999999999864
No 5
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=2.6e-20 Score=124.78 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=46.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE--ecCCceeEEEEEeec
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF--LDSSGKHNKFAITKA 103 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is--T~Ger~~DvFYVTD~ 103 (106)
|++||.++|||||||+|+++|+++||+|+.|||+ |.||+++|+||| |.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~ 50 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS 50 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC
Confidence 7999999999999999999999999999999999 999999999999 44
No 6
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.2e-17 Score=148.15 Aligned_cols=67 Identities=28% Similarity=0.359 Sum_probs=64.6
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
.+|+ |+|.|.|+.+...|++||.+.||||||++++++|.++||+|+.|||+|.||+++|+|||||..
T Consensus 775 f~i~-p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~ 841 (867)
T COG2844 775 FPIP-PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDAD 841 (867)
T ss_pred eccC-CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccc
Confidence 5677 999999999999999999999999999999999999999999999999999999999999875
No 7
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.69 E-value=8.5e-17 Score=141.86 Aligned_cols=67 Identities=28% Similarity=0.385 Sum_probs=63.5
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..+| |+|.|||+.|+++|+|+|.+.||||||++|+++|.++|++|+.|+|+|.|++++|+|||++..
T Consensus 763 ~~~~-~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~ 829 (850)
T TIGR01693 763 FAVP-PRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLF 829 (850)
T ss_pred CCCC-CeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCC
Confidence 3456 899999999999999999999999999999999999999999999999999999999999754
No 8
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.69 E-value=1.1e-16 Score=143.12 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=64.3
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..+| |+|.|+|+.++.+|+|+|.+.||||||++|+++|.++||+|+.|+|+|.|++++|+|||+|.+
T Consensus 780 ~~~~-~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~ 846 (869)
T PRK04374 780 FRFA-PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEH 846 (869)
T ss_pred CCCC-CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence 5577 899999999999999999999999999999999999999999999999999999999999865
No 9
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.66 E-value=3.3e-16 Score=140.01 Aligned_cols=67 Identities=25% Similarity=0.272 Sum_probs=63.9
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..++ |+|.|+|+.+..+|+|+|.+.||||||++|+++|.++||+|+.|+|.|.|++++|+|||+|.+
T Consensus 798 ~~~~-~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~ 864 (895)
T PRK00275 798 FAFP-TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD 864 (895)
T ss_pred CCCC-CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCC
Confidence 3566 899999999999999999999999999999999999999999999999999999999999864
No 10
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.64 E-value=6.2e-16 Score=100.36 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=48.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
|||||.+.||||||++|+++|.++|++|+.|+|.|.|+++.|+|||+|.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~ 50 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEE 50 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCc
Confidence 79999999999999999999999999999999999999999999999854
No 11
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.63 E-value=9.1e-16 Score=135.32 Aligned_cols=67 Identities=31% Similarity=0.383 Sum_probs=63.7
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..+| |+|.++|+.+..+|+|+|.+.||||||++|+++|.++|++|+.|+|.|.|++++|+|||+|.+
T Consensus 691 ~~~~-~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~ 757 (774)
T PRK03381 691 PAAP-PRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAA 757 (774)
T ss_pred CCCC-cEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC
Confidence 4456 899999999999999999999999999999999999999999999999999999999999875
No 12
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.63 E-value=1.6e-15 Score=99.40 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=47.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe-cCCceeEEEEEeecc
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 104 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Ger~~DvFYVTD~~ 104 (106)
++||.+.||||||++++++|+++||+|+.|+|.| .|+++.|+|||+|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~ 51 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR 51 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCC
Confidence 6899999999999999999999999999999996 999999999999864
No 13
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.62 E-value=1.6e-15 Score=135.49 Aligned_cols=67 Identities=30% Similarity=0.458 Sum_probs=63.7
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..++ |+|.|||+.++.+|+|+|.+.||||||++|+++|.++|++|+.|+|.|.|++++|+|||+|.+
T Consensus 827 ~~~~-~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~ 893 (931)
T PRK05092 827 FHVP-PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLF 893 (931)
T ss_pred CCCC-CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCC
Confidence 4566 899999999999999999999999999999999999999999999999999999999999854
No 14
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=4.1e-15 Score=95.52 Aligned_cols=51 Identities=29% Similarity=0.373 Sum_probs=47.3
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec-CCceeEEEEEeecc
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITKAY 104 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Ger~~DvFYVTD~~ 104 (106)
++-|+|.+.||||||++++++|..+||+|+.|+|.|. +++++|+|||+|.+
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~ 52 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPD 52 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCC
Confidence 4678999999999999999999999999999999987 68999999999764
No 15
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.60 E-value=3.5e-15 Score=132.97 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=62.5
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeec
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 103 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~ 103 (106)
..+| |+|.|+|+.++.+|+|+|.+.||||||++|+++|..+||+|+.|+|.|.|++++|+|||++.
T Consensus 770 ~~~~-~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~ 835 (856)
T PRK03059 770 FPIT-PRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS 835 (856)
T ss_pred CCCC-ceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC
Confidence 4566 89999999999999999999999999999999999999999999999999999999999754
No 16
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.41 E-value=9.7e-13 Score=116.37 Aligned_cols=63 Identities=25% Similarity=0.268 Sum_probs=60.7
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE-ecCCceeEEEEEeecc
Q 033987 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Ger~~DvFYVTD~~ 104 (106)
|.|.++|..+..+|.|+|.+.||||||++|+.+|..+||+|+.|+|. |.|++++|+|||+|.+
T Consensus 656 ~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~ 719 (850)
T TIGR01693 656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF 719 (850)
T ss_pred CEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC
Confidence 79999999999999999999999999999999999999999999999 8999999999999865
No 17
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.41 E-value=1e-12 Score=117.29 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=61.0
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe-cCCceeEEEEEeecc
Q 033987 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Ger~~DvFYVTD~~ 104 (106)
|.|.|+|+.+..+|.|+|.+.||||||++|+.+|..+||+|+.|+|.| .+++++|+|||+|.+
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~ 728 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELN 728 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999988 999999999999875
No 18
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.36 E-value=4.2e-12 Score=81.80 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=47.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
|-|+|...||||+|++++++|+++|++|++|+|.|.++++.|+|||+|.+
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~ 51 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN 51 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCC
Confidence 56899999999999999999999999999999999989999999999864
No 19
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.34 E-value=4.1e-12 Score=113.75 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=60.8
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC-ceeEEEEEeecc
Q 033987 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge-r~~DvFYVTD~~ 104 (106)
|.|.|+|+.+..+|.|+|.+.||||||++|+.+|..+||+|+.|+|.|.++ ++.|+|||+|.+
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~ 752 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPD 752 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCC
Confidence 899999999999999999999999999999999999999999999999888 999999999875
No 20
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.29 E-value=2e-11 Score=75.77 Aligned_cols=50 Identities=34% Similarity=0.420 Sum_probs=47.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
|+++|.+.||||+|.+++++|.++|++|..+++.+.++++.|.|||.+.+
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~ 50 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDAD 50 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCC
Confidence 78999999999999999999999999999999999999999999998754
No 21
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.02 E-value=1.4e-09 Score=97.65 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=59.6
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe-cCCceeEEEEEeecc
Q 033987 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Ger~~DvFYVTD~~ 104 (106)
+.|.+.++.+..+|.|.|.+.||||||.+|+.+|..+|++|+.|+|.| .++.+.|+|||+|.+
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~ 783 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF 783 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCC
Confidence 799999999999999999999999999999999999999999999988 788899999998754
No 22
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.97 E-value=2.7e-09 Score=70.47 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=43.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec-CCceeEEEEEeecc
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITKAY 104 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Ger~~DvFYVTD~~ 104 (106)
|-|.++|||||+.+++.+|..+||+|+.|+|-|- .+++.|+|+|+|.+
T Consensus 4 I~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~ 52 (68)
T cd04928 4 ITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK 52 (68)
T ss_pred EEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC
Confidence 5688999999999999999999999999999964 56899999999875
No 23
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.95 E-value=5.6e-09 Score=63.78 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=46.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
+.+.|...||||+|++++++|+++|++|..+++.+.+++..++|+|.+.+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 46889999999999999999999999999999999988999999997654
No 24
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.87 E-value=1.1e-08 Score=92.29 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=56.0
Q ss_pred CEEEEeCCCC---CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE-ecCCceeEEEEEeecc
Q 033987 42 PKVIIDLDSD---PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss---~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Ger~~DvFYVTD~~ 104 (106)
|.|.+.+... ..+|.|-|.+.|||||+.+++.+|..+||+|+.|+|. |..+.+.|+|||+|.+
T Consensus 689 ~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~ 755 (895)
T PRK00275 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD 755 (895)
T ss_pred CeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC
Confidence 5677877775 5899999999999999999999999999999999995 5566899999999865
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.85 E-value=1.5e-08 Score=90.01 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=59.8
Q ss_pred CCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 40 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 40 p~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..|.|.+.++. ...|.|.|.+.|||||+.+|+.+|..+|+||..|+|.|.++++.|+|+|++.+
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~ 649 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRF 649 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence 34799999888 99999999999999999999999999999999999999888999999999753
No 26
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.78 E-value=3.5e-08 Score=59.61 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=42.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC--ceeEEEEEeec
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS--GKHNKFAITKA 103 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge--r~~DvFYVTD~ 103 (106)
|.|.|...||||+|.+++++|.++|+||..+++.+.++ +....+.+.|.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~ 51 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE 51 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC
Confidence 57899999999999999999999999999999999988 55555555543
No 27
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.60 E-value=2e-07 Score=83.80 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=57.5
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE-ecCCceeEEEEEeecc
Q 033987 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Ger~~DvFYVTD~~ 104 (106)
|.|.+.++.....|-|-|.+.|||||+..++.+|..+||+|..|+|. |..+.+.|+|+|+|.+
T Consensus 666 ~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~ 729 (856)
T PRK03059 666 PIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE 729 (856)
T ss_pred CeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC
Confidence 57779888888999999999999999999999999999999999995 5677899999998764
No 28
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.46 E-value=9.3e-07 Score=79.93 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=55.1
Q ss_pred CEEEE-eCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe-cCCceeEEEEEeecc
Q 033987 42 PKVII-DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 104 (106)
Q Consensus 42 prV~I-DN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Ger~~DvFYVTD~~ 104 (106)
|.|.+ ........|-|-|.+.|||||+..|+.+|..+||+|..|+|.| ..+.+.|+|+|+|.+
T Consensus 677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~ 741 (869)
T PRK04374 677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQD 741 (869)
T ss_pred CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCC
Confidence 44444 4466778999999999999999999999999999999999998 677899999999865
No 29
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=98.40 E-value=2.3e-07 Score=82.46 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=49.8
Q ss_pred CCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeec
Q 033987 40 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 103 (106)
Q Consensus 40 p~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~ 103 (106)
.+|+|.+.. +|+||.+.||+|+|+.++++|- +|..|+++|.|..++|+||++..
T Consensus 623 ~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~ 676 (693)
T PRK00227 623 GITATFWHG------NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG 676 (693)
T ss_pred CCCceEeeC------cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc
Confidence 448999886 8999999999999999999999 89999999999999999999753
No 30
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.27 E-value=4.5e-06 Score=54.07 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=40.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEe
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 101 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVT 101 (106)
-||.|.+.||||++++++++|.+.|.||...+.++-|+++.=.+-|.
T Consensus 3 ~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~ 49 (76)
T PF13740_consen 3 LVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVS 49 (76)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEE
Confidence 47999999999999999999999999999999999999988777663
No 31
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.14 E-value=6.6e-06 Score=52.83 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=39.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
+|.|.+.||||++++++++|+++|+||...+-.+.++++.=.|.|
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v 45 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILV 45 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEE
Confidence 578999999999999999999999999999888888776555555
No 32
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.06 E-value=7.9e-06 Score=54.82 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=46.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeec
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 103 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~ 103 (106)
|+|.|.-+|+.||=-|+.+++.+.||+|.++.++|+|.|..=+|.|.-.
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~ 49 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR 49 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC
Confidence 6899999999999999999999999999999999999999999999643
No 33
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.05 E-value=1.2e-05 Score=51.20 Aligned_cols=43 Identities=26% Similarity=0.467 Sum_probs=36.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
||.|.+.||||++.+|++.|+++|++|...+-.++-+ ...|++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~--~~~f~~ 43 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPD--SGRFFM 43 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCC--CCeEEE
Confidence 5889999999999999999999999999998886322 234665
No 34
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.94 E-value=2.9e-05 Score=50.48 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=36.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
-|+.+.+.||||+.+.|++.|+++|.||...+....++++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F 41 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEF 41 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEE
Confidence 3788999999999999999999999999999999977766
No 35
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.93 E-value=3.3e-05 Score=49.07 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=37.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCc--eeEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG--KHNKFAI 100 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger--~~DvFYV 100 (106)
+|.|.+.||||++.+|++.|.++|++|......+.+.. -...|+.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~ 47 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKA 47 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEE
Confidence 47899999999999999999999999999999988732 2345543
No 36
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.86 E-value=9.6e-05 Score=47.34 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=32.7
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
.-+-++|.+.||+|+|.+|+++|.+.|++|....+.+..
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~ 43 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNK 43 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEec
Confidence 446689999999999999999999999999999999953
No 37
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.70 E-value=8e-05 Score=48.97 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=36.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCcee
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKH 95 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~ 95 (106)
-++.+.+.||||+++++++.|++.|+||....-.+.++++.
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~ 42 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFT 42 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccE
Confidence 37899999999999999999999999999998888766543
No 38
>PRK00194 hypothetical protein; Validated
Probab=97.69 E-value=4.6e-05 Score=49.93 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=35.9
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
.-++.|.+.||||++.++++.|++.|+||....-.+.++++
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~ 43 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYF 43 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCee
Confidence 45899999999999999999999999999988877766543
No 39
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.64 E-value=0.00013 Score=46.53 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=32.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
++|.+.||+|+|.+|+++|++.|.+|....+.+.
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 7899999999999999999999999999999876
No 40
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.60 E-value=0.00042 Score=43.12 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=32.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
++|...||||+|.+|+++|++.|.+|.........
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~ 36 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG 36 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec
Confidence 68999999999999999999999999988887753
No 41
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0003 Score=64.60 Aligned_cols=63 Identities=25% Similarity=0.352 Sum_probs=57.9
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCc-eeEEEEEeecc
Q 033987 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG-KHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger-~~DvFYVTD~~ 104 (106)
|-|.+-+......|=|-|.+.|+|.|+..++.++...|++|+.|.|-|--+. +.|+|+|.|.+
T Consensus 672 ~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~ 735 (867)
T COG2844 672 PLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPD 735 (867)
T ss_pred cceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCC
Confidence 6788888888899999999999999999999999999999999999997775 99999999765
No 42
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.48 E-value=0.00094 Score=39.84 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=37.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec-CCceeEEEEEee
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITK 102 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Ger~~DvFYVTD 102 (106)
+.+...||+|+|.++++.|.+.|.+|.+....+. ++......+.++
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 6788999999999999999999999999998876 555455554444
No 43
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.46 E-value=0.00086 Score=40.69 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=36.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC-ceeEEEEEe
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAIT 101 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge-r~~DvFYVT 101 (106)
.+.|...||+|+|.+++++|.+.|.+|.+....+..+ ......+++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 4788999999999999999999999999998766532 333444443
No 44
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.41 E-value=0.00078 Score=40.30 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=29.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
+.|...||||+|.+++++|.+.|++|.+-.....
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3578899999999999999999999987776554
No 45
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.40 E-value=0.00087 Score=39.77 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=36.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC--CceeEEEEE
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS--SGKHNKFAI 100 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G--er~~DvFYV 100 (106)
+.|...||+|+|.+++++|.+.|++|....+...+ +...=.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 56889999999999999999999999999998865 343444444
No 46
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.34 E-value=0.0017 Score=34.95 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=36.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC-CceeEEEEEee
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITK 102 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G-er~~DvFYVTD 102 (106)
|.+...|++|+|.++.++|.+.|++|......... ......++..+
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD 47 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence 46788999999999999999999999999987754 33445554443
No 47
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.25 E-value=0.0016 Score=38.95 Aligned_cols=46 Identities=11% Similarity=0.196 Sum_probs=38.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC-CceeEEEEEee
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITK 102 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G-er~~DvFYVTD 102 (106)
++|.-.||||.|.++++.|.+.|+||...++...+ +...=.|-+-|
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999988755 67776665544
No 48
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.22 E-value=0.00059 Score=52.28 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=39.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC--ceeEEEEE
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS--GKHNKFAI 100 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge--r~~DvFYV 100 (106)
-.|+|.+.||||+++++++.|++.|+||..=+=.+++. +-.+.|..
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~ 143 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHI 143 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEE
Confidence 57899999999999999999999999999888888775 55666654
No 49
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.22 E-value=0.0012 Score=41.09 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=34.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCc
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 93 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger 93 (106)
-+.|.-.|+||.|.++++.|.+.|+||...++...++.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~ 40 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF 40 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence 46788999999999999999999999999999877664
No 50
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.21 E-value=0.00058 Score=52.32 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=44.4
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
..++-||.|.+.||||+.+.|+++|+++|+||...+.+.-|+.+.=.+-|
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv 54 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL 54 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE
Confidence 35788999999999999999999999999999999999999887655544
No 51
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.15 E-value=0.0031 Score=37.60 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
+.+...||+|.|.++++.|.+.|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 577899999999999999999999999888766
No 52
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.13 E-value=0.0039 Score=37.37 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=32.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
.+.+...|++|+|.++.+.|.+.|++|.+.......
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 467889999999999999999999999988887753
No 53
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.07 E-value=0.004 Score=35.40 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=32.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCc
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 93 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger 93 (106)
+.|...|++|+|.++.+.|.+.|++|....+...++.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~ 37 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDG 37 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCC
Confidence 4678899999999999999999999999998877633
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.97 E-value=0.0028 Score=39.32 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=30.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
++|...||||+|.++.++|++.|.+|..-...+.
T Consensus 3 l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~ 36 (76)
T cd04888 3 LSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP 36 (76)
T ss_pred EEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 6889999999999999999999999998876553
No 55
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.97 E-value=0.0026 Score=38.12 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=31.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
++.|.-.||||.|.++.+.|.+.|.+|........+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 467888999999999999999999999888765554
No 56
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.92 E-value=0.0031 Score=50.56 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=36.7
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe--cCC
Q 033987 52 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL--DSS 92 (106)
Q Consensus 52 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT--~Ge 92 (106)
-..-+|.|.+.||||+.++|+++|+++|+||....-.+ .++
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g 46 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG 46 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC
Confidence 34568999999999999999999999999999999988 444
No 57
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=96.64 E-value=0.0026 Score=44.59 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=28.8
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 84 (106)
..||.|.+.||||+-+.+.++|+++|+||..
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIld 33 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILD 33 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEE
Confidence 4589999999999999999999999999975
No 58
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.63 E-value=0.01 Score=36.52 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=35.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec--CCceeEEEEEe
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKHNKFAIT 101 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Ger~~DvFYVT 101 (106)
+.|.-.||||.|.++++.|.+.|++|........ +....-.|.+.
T Consensus 4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 6678899999999999999999999998877664 21333355553
No 59
>PRK08577 hypothetical protein; Provisional
Probab=96.47 E-value=0.023 Score=40.37 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=36.5
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 50 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 50 ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
......-+.|.+.||+|+|.+++++|++.|.+|......+..
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 334478899999999999999999999999999988877654
No 60
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.41 E-value=0.019 Score=36.02 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=29.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
+.|.-.||||-|.++++.|++.|.+|.+-...-.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 4678899999999999999999999987766554
No 61
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.36 E-value=0.0096 Score=47.95 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=35.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
-+|.|.+.||||+..++++.|+++|+||....-.+ +...+.|+.
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~--~~~~~~F~m 51 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFD--DRLSGRFFM 51 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeee--cCCCCeEEE
Confidence 57899999999999999999999999998766553 233445543
No 62
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.34 E-value=0.032 Score=35.80 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=34.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC-ceeEEEEE
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAI 100 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge-r~~DvFYV 100 (106)
|-+.+.-.|+||.|.++.+.|++.|+||.+-.....++ ...=.|||
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~v 48 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFI 48 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEE
Confidence 44666778999999999999999999998775544432 22345666
No 63
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=96.29 E-value=0.01 Score=47.71 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=32.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
+|.|.+.||||+.+.|++.|+++|+||....-..+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~ 36 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD 36 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc
Confidence 68899999999999999999999999999877664
No 64
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.29 E-value=0.0079 Score=48.63 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=31.9
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
.-||.|.+.||||+.+.|++.|+++|+||....=.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 34899999999999999999999999999987764
No 65
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.06 E-value=0.02 Score=34.93 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=32.5
Q ss_pred EEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe--cCCceeEEEE
Q 033987 58 EITFGDRLGALLDTMNALKNLGLNVVKANVFL--DSSGKHNKFA 99 (106)
Q Consensus 58 EV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT--~Ger~~DvFY 99 (106)
-+...|+||.|.++++.|++.|++|..-.... .++...=+|.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~ 46 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLS 46 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEE
Confidence 45789999999999999999999998877655 3444443333
No 66
>PRK04435 hypothetical protein; Provisional
Probab=96.04 E-value=0.032 Score=40.77 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=41.1
Q ss_pred EEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 45 IIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 45 ~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
-|+.....+..-+.+...||||+|.+|.++|++.|.||..-......
T Consensus 60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~ 106 (147)
T PRK04435 60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPL 106 (147)
T ss_pred CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCC
Confidence 36667889999999999999999999999999999999987765543
No 67
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.02 E-value=0.0049 Score=37.56 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=30.2
Q ss_pred EEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCc
Q 033987 58 EITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 93 (106)
Q Consensus 58 EV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger 93 (106)
=+.+.||||+|.+++++|.+.|.+|......+.++.
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~ 38 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEI 38 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCE
Confidence 357899999999999999999999988776655433
No 68
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.95 E-value=0.024 Score=50.96 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=42.9
Q ss_pred EEEEeCCCC-CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 43 KVIIDLDSD-PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 43 rV~IDN~ss-~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
.|.++.+.+ ...+-|+|.+.||+|+|.+|+++|++.|.+|.+....+..+..
T Consensus 614 ~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~ 666 (702)
T PRK11092 614 AVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRV 666 (702)
T ss_pred EeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCE
Confidence 367776533 3566799999999999999999999999999999988876433
No 69
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.85 E-value=0.068 Score=32.78 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=30.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
+-+.+.-.|+||.|..+.+.|.+.|++|.+....-
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~ 36 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYP 36 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEec
Confidence 35778899999999999999999999999776543
No 70
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=95.77 E-value=0.057 Score=40.46 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=32.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
++.|...|+||.|.+++..|++.|+||.+-.+...+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~ 38 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTE 38 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecC
Confidence 588999999999999999999999999888777655
No 71
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.71 E-value=0.037 Score=49.43 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=42.7
Q ss_pred EEEEeCCCC-CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 43 KVIIDLDSD-PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 43 rV~IDN~ss-~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
.|.++.+.. ..-+-|+|.+.||+|+|.+|+.+|.+.|.+|.+..+.+..+..
T Consensus 598 ~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~ 650 (683)
T TIGR00691 598 EVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKRE 650 (683)
T ss_pred EEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCE
Confidence 366765433 4567799999999999999999999999999999998875433
No 72
>PRK07334 threonine dehydratase; Provisional
Probab=95.68 E-value=0.045 Score=45.13 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=34.4
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
.+-|+|.+.||+|+|.+|+++|++.+.+|.+....+.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence 4789999999999999999999999999999998765
No 73
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=95.57 E-value=0.049 Score=49.47 Aligned_cols=56 Identities=25% Similarity=0.159 Sum_probs=47.9
Q ss_pred EEEEeCC-CCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEE
Q 033987 43 KVIIDLD-SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 98 (106)
Q Consensus 43 rV~IDN~-ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvF 98 (106)
-|..+++ ....-.=|+|.+.||+|||.+|+++|.+.+.||.+....++++++.+..
T Consensus 615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~ 671 (701)
T COG0317 615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQ 671 (701)
T ss_pred EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEE
Confidence 4777877 4577788999999999999999999999999999999988866665544
No 74
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.52 E-value=0.068 Score=48.68 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=40.5
Q ss_pred EEEeCCCC-CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 44 VIIDLDSD-PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 44 V~IDN~ss-~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
|.+++..+ ....-|+|.+.||+|||.+|+.+|++.+++|....+.+..
T Consensus 655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~ 703 (743)
T PRK10872 655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDT 703 (743)
T ss_pred eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcC
Confidence 66765423 3556799999999999999999999999999999998764
No 75
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=95.45 E-value=0.048 Score=49.12 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=40.7
Q ss_pred EEEEEEe-CCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEee
Q 033987 55 TIVEITF-GDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 102 (106)
Q Consensus 55 TVVEV~a-~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD 102 (106)
-.+.|.. +|++|+|..++.+|+-.|++|++|.+.+ ++.++..|-|..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~ 594 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA 594 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec
Confidence 4666777 9999999999999999999999999999 555578998863
No 76
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=95.28 E-value=0.0077 Score=46.70 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=44.5
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
..+|-||.+.+.||||+...++|+..+.|.|+..++++..|+.+.=+--|
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li 51 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI 51 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE
Confidence 35778999999999999999999999999999999999999987655443
No 77
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=95.27 E-value=0.069 Score=40.74 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=31.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
.+.|...||||+|.+++..|++.|+||.+=.+..
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 6889999999999999999999999999888754
No 78
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=95.19 E-value=0.11 Score=39.08 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=31.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
++.|...|+||.|.+|+..|++.|.||.+-.+.-..
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te 39 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTE 39 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecC
Confidence 578999999999999999999999999887765543
No 79
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=94.74 E-value=0.18 Score=35.64 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=35.5
Q ss_pred CCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC
Q 033987 48 LDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 92 (106)
Q Consensus 48 N~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge 92 (106)
|.+...+| +.|...|+||+|..|+..|+.-|.||.+=.+.--++
T Consensus 3 ~~~~~~~t-isvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~ 46 (96)
T PRK08178 3 NTTHDNVI-LELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQD 46 (96)
T ss_pred CCCCCCEE-EEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCC
Confidence 34445555 799999999999999999999999999876654333
No 80
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=94.48 E-value=0.035 Score=43.11 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=30.2
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEE
Q 033987 50 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 50 ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 84 (106)
+...--.++|.+.||||++.++++.|..+|++|..
T Consensus 88 a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~ 122 (176)
T COG2716 88 ANPAPVWVYVDANDRPGIVEEFTALFDGHGINIEN 122 (176)
T ss_pred CCCceEEEEEEecCCccHHHHHHHHHHhcCCchhh
Confidence 33444578999999999999999999999999864
No 81
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=94.21 E-value=0.093 Score=33.74 Aligned_cols=28 Identities=18% Similarity=0.508 Sum_probs=23.9
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEE
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~ 84 (106)
+-+.-.|+||.|+++.+.|++.|+|+.+
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~ 30 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTH 30 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEE
Confidence 3344588999999999999999999875
No 82
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.15 E-value=0.015 Score=39.98 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=30.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
||+++.-||-.+||++-+|+.||..|-+|.|.
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIg 34 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIG 34 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhh
Confidence 79999999999999999999999999999995
No 83
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=93.87 E-value=0.32 Score=32.69 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=30.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
.+.+...|+||.|..++..|+.-|.||.+=.+.
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg 36 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLN 36 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEec
Confidence 478999999999999999999999999988776
No 84
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.80 E-value=0.18 Score=34.43 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=36.0
Q ss_pred eCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec-CCceeEEEEE
Q 033987 47 DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAI 100 (106)
Q Consensus 47 DN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Ger~~DvFYV 100 (106)
++......|-+-+.-.|+||.|+++.+.|++.|+|+.+=.=--- +....=.|||
T Consensus 7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV 61 (90)
T cd04931 7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI 61 (90)
T ss_pred cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE
Confidence 33344445666667799999999999999999999875322211 2222446666
No 85
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=93.79 E-value=0.13 Score=35.60 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=31.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
++.+...|+||.|..++..|...|.||.+=.++--
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~T 38 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHS 38 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEeccc
Confidence 57889999999999999999999999999887643
No 86
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.76 E-value=0.043 Score=36.51 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=26.5
Q ss_pred EEEEEeCC-cccHHHHHHHHHHhCCcEEEE
Q 033987 56 IVEITFGD-RLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 56 VVEV~a~D-RpGLL~di~~aL~dLgL~I~~ 84 (106)
||.|-++| +.|.++.|+++|+++|+||..
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~ 30 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR 30 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence 57789999 999999999999999999863
No 87
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.48 E-value=0.15 Score=32.09 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=28.9
Q ss_pred EeCCcccHHHHHHHHHHhCCcEEEEEEEEe-cCCceeEEEEE
Q 033987 60 TFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 100 (106)
Q Consensus 60 ~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Ger~~DvFYV 100 (106)
.-.|+||.|.++.+.|++.|+||.+-.=.- .++...=.|||
T Consensus 5 ~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~i 46 (75)
T cd04880 5 SLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFV 46 (75)
T ss_pred EeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE
Confidence 346999999999999999999998762221 23233345555
No 88
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=93.12 E-value=0.17 Score=33.91 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=31.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
.+.+...|+||.|..++..+..-|.||.+=.+.-
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~ 38 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ 38 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee
Confidence 5789999999999999999999999999887765
No 89
>PRK08818 prephenate dehydrogenase; Provisional
Probab=92.03 E-value=0.51 Score=39.53 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=35.5
Q ss_pred cEEEEEEeC-CcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 54 ATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 54 ~TVVEV~a~-DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
.+-+-+.-. |+||.|+++...|.+.|+||.+=.+ .......-.|||
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i 341 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRI 341 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEE
Confidence 444555554 9999999999999999999998888 444434555887
No 90
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=91.62 E-value=0.4 Score=36.08 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=35.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
-|.|+..||||=|..++.+|++.|+||+.=.|+--||--
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFG 43 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFG 43 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcc
Confidence 378999999999999999999999999999999888743
No 91
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.26 E-value=0.51 Score=29.74 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=28.7
Q ss_pred CCcEEEEEEeC----CcccHHHHHHHHHHhCCcEEEEEE
Q 033987 52 PDATIVEITFG----DRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 52 ~~~TVVEV~a~----DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
++...|.|.+. |.||.+..+.++|.+.|++|..-.
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 45667777777 899999999999999999997655
No 92
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.20 E-value=0.41 Score=31.40 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=29.3
Q ss_pred EEeCCcccHHHHHHHHHHhCCcEEEEEEEEec-CCceeEEEEE
Q 033987 59 ITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAI 100 (106)
Q Consensus 59 V~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Ger~~DvFYV 100 (106)
+.-.|+||.|+++.+.|++.|+++.+=.=--- ++...=.|||
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i 47 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV 47 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE
Confidence 44479999999999999999999875332221 2223446666
No 93
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.17 E-value=1.1 Score=25.55 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.4
Q ss_pred eCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 61 FGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 61 a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
..|++|.+.++.++|.+.|++|..-...
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 4788999999999999999999876553
No 94
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.17 E-value=0.88 Score=28.38 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=25.5
Q ss_pred EEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 58 EITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 58 EV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
.|.-.||||-|..+.+.|.. |.||..-+=.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~ 31 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYR 31 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE
Confidence 57789999999999999999 9998865443
No 95
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=90.74 E-value=0.61 Score=38.70 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=34.1
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
...++.|+..|++|+.+.|+..|.+.|+||..+.-.+
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~ 42 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD 42 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence 5689999999999999999999999999999887764
No 96
>PRK11899 prephenate dehydratase; Provisional
Probab=90.47 E-value=0.56 Score=37.88 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=35.3
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE-ecCCceeEEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI 100 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Ger~~DvFYV 100 (106)
.|-+-+.-.||||.|+++.++|++.|+|+.+=.=- +.++-..=.|||
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i 241 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA 241 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE
Confidence 56677777899999999999999999998763322 123334668887
No 97
>PRK06382 threonine dehydratase; Provisional
Probab=90.32 E-value=0.49 Score=39.18 Aligned_cols=37 Identities=30% Similarity=0.315 Sum_probs=33.3
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
..+.+-++|.-.||||.|.++++.|.+.|.||.+-..
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~ 363 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEV 363 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEE
Confidence 5678899999999999999999999999999976554
No 98
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=90.09 E-value=1.3 Score=28.08 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.6
Q ss_pred CcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 63 DRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 63 DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
|+||.|..|+..|..-|.+|.+=.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~ 27 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGP 27 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeee
Confidence 789999999999999999999988887
No 99
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=90.03 E-value=1.1 Score=34.24 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=42.4
Q ss_pred EEEEeC---CCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec--CCcee
Q 033987 43 KVIIDL---DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKH 95 (106)
Q Consensus 43 rV~IDN---~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Ger~~ 95 (106)
.|.||. +..+....+=+...||||.+-.++..|.+.|+||..-.+.-. |+.++
T Consensus 134 iv~idg~~vd~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai 191 (208)
T TIGR00719 134 ITEINGFAIEFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIAL 191 (208)
T ss_pred EEEECCEEEEecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEE
Confidence 566665 456666677788899999999999999999999999988764 44444
No 100
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.81 E-value=1.9 Score=28.21 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=22.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~ 84 (106)
++.|.-.||||-|..+.++|. |-+|..
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~ 29 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITE 29 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeE
Confidence 688999999999999999999 445543
No 101
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=89.06 E-value=1.3 Score=26.40 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 62 GDRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 62 ~DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
.|++|.+.++.++|.+.|++|..-.-
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 68999999999999999999985543
No 102
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=89.04 E-value=1.4 Score=33.20 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=32.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 92 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge 92 (106)
-|+-|.-.|+||-|..|+.+|.+.++|+.-++-.+.-.
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek 107 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK 107 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC
Confidence 46788889999999999999999999999887765444
No 103
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.74 E-value=1.1 Score=31.91 Aligned_cols=32 Identities=3% Similarity=0.178 Sum_probs=26.6
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
.|-+-+.-.|+||.|+++.+.|++.|+|+.+=
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~I 72 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHL 72 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEE
Confidence 35555666999999999999999999998753
No 104
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.69 E-value=1.6 Score=36.62 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=39.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeec
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 103 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~ 103 (106)
-.+.+...|+||.|.+++..|.+.|++|.+-.-....+.....++||+.
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 4788889999999999999999999999976554333356778888863
No 105
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=88.05 E-value=1.1 Score=24.98 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=25.4
Q ss_pred EEEEEeCC---cccHHHHHHHHHHhCCcEEEEEEE
Q 033987 56 IVEITFGD---RLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 56 VVEV~a~D---RpGLL~di~~aL~dLgL~I~~A~I 87 (106)
+|+|.+.+ .+|.+.++.++|.+.|++|..-.-
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 45555554 899999999999999999976543
No 106
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.91 E-value=1 Score=37.72 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=37.8
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEE
Q 033987 52 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 98 (106)
Q Consensus 52 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvF 98 (106)
..++++- .-.|+||.+..|+..|++.|+||..=++...|+.+.-+|
T Consensus 337 ~~~rlii-~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii 382 (409)
T PRK11790 337 GGHRLLH-IHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI 382 (409)
T ss_pred CCceEEE-EeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE
Confidence 4456554 779999999999999999999998888888886665444
No 107
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=86.58 E-value=1.1 Score=36.69 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=36.3
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe-cCCceeEEEEE
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 100 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Ger~~DvFYV 100 (106)
..|-+-+.-.|+||.|+++..+|+..|+|+.+=.=-= .+.-..=.|||
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i 241 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI 241 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE
Confidence 5788888888999999999999999999987633222 23333556766
No 108
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=86.13 E-value=3.3 Score=34.83 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=35.4
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE-ecCCceeEEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI 100 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Ger~~DvFYV 100 (106)
.|-+-+...|+||.|+++-+.|++.|+|+.+=.=- +.+.-..=.|||
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi 344 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL 344 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE
Confidence 55555777899999999999999999998763322 234545677877
No 109
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=85.26 E-value=1.2 Score=36.06 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=29.5
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEE
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
+.--+.|.-.||||.|.++.+.+.+.|.||..-.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~ 337 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKID 337 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 3337889999999999999999999999997653
No 110
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.78 E-value=5.8 Score=23.67 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=28.1
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 55 TIVEITFG---DRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 55 TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
++|.+.+. +++|.+.++.++|.+.|+++..-.-++
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 45666665 789999999999999999997665443
No 111
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=84.00 E-value=2.3 Score=33.83 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=31.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 92 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge 92 (106)
+.+.+.+|||.|.+++..++++|-||.-|.-..+++
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~ 40 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKD 40 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhcc
Confidence 567889999999999999999999999887665544
No 112
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=83.86 E-value=2.3 Score=25.22 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=27.0
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 55 TIVEITF---GDRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 55 TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
++|.|.+ .+++|++.++.++|.+.|+++..-.-
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4566666 48899999999999999999976543
No 113
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=83.70 E-value=2.3 Score=32.90 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=29.8
Q ss_pred CcEEEEEEe--CCcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 53 DATIVEITF--GDRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 53 ~~TVVEV~a--~DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
..-|||+.. ++.||.|..++..|++.|++|.-+..
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 356788876 66799999999999999999998754
No 114
>PRK08198 threonine dehydratase; Provisional
Probab=81.02 E-value=3.2 Score=34.07 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=33.9
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 50 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 50 ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
...+..-+.|.-.||||.|.++.+.|.+.|.||..-...
T Consensus 323 ~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 323 AAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 356667899999999999999999999999999876654
No 115
>PRK06545 prephenate dehydrogenase; Validated
Probab=80.22 E-value=2.8 Score=34.02 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=33.1
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 52 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 52 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
+.+.-+-|.-.||||.|..++..|.+.|+||..-+|.-
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~ 325 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE 325 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence 45666778889999999999999999999999888843
No 116
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=79.35 E-value=3.8 Score=23.29 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=25.4
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 56 IVEITFG---DRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 56 VVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
+|++.+. +++|++.++.+.|.+.|+++..-.-
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566444 8899999999999999999965543
No 117
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=78.56 E-value=3 Score=35.84 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=32.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
+||...||.|+-.++...|...++++..-.|...|
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 79999999999999999999999999999987654
No 118
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.04 E-value=6.1 Score=23.26 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=27.7
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 55 TIVEITFG---DRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 55 TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
++|.+.+. +++|++.++.+.|.+.|+++..-..+.
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 45666664 789999999999999999997665443
No 119
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=76.75 E-value=5.5 Score=23.77 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.6
Q ss_pred CCcccHHHHHHHHHHhCCcEEEEE
Q 033987 62 GDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 62 ~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
.+++|.+.++-++|.+.|+++..-
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i 34 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI 34 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE
Confidence 478999999999999999999865
No 120
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=75.19 E-value=6.9 Score=23.91 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=24.8
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCcEEE
Q 033987 55 TIVEITFG---DRLGALLDTMNALKNLGLNVV 83 (106)
Q Consensus 55 TVVEV~a~---DRpGLL~di~~aL~dLgL~I~ 83 (106)
++|.|.+. ++||++.++.++|.+.|+++.
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 35666664 789999999999999999996
No 121
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.52 E-value=6.5 Score=25.48 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=25.2
Q ss_pred EEEEEE---eCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 55 TIVEIT---FGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 55 TVVEV~---a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
+.|.|. -.+++|++.+|-++|.+.|++|..=
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 345552 4688999999999999999999864
No 122
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.54 E-value=18 Score=21.23 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=27.9
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 55 TIVEITFG---DRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 55 TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
++|.+.+. +++|++..+.+.|++.|+++..-..+.
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 35666664 789999999999999999998765543
No 123
>PRK11898 prephenate dehydratase; Provisional
Probab=71.50 E-value=9.9 Score=30.48 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=31.0
Q ss_pred cEEEEEEeC-CcccHHHHHHHHHHhCCcEEEEEEEEec---CCceeEEEEE
Q 033987 54 ATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFLD---SSGKHNKFAI 100 (106)
Q Consensus 54 ~TVVEV~a~-DRpGLL~di~~aL~dLgL~I~~A~IsT~---Ger~~DvFYV 100 (106)
.|-+-+.-. ||||.|+++.+.|++.|+|+.+ |.+- ++...=.|||
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~--IeSRP~~~~~~~y~F~v 244 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTR--IESRPTKTGLGTYFFFI 244 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeee--EecccCCCCCccEEEEE
Confidence 455555554 5799999999999999999875 4332 2323446666
No 124
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=71.34 E-value=8.7 Score=23.83 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=27.2
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 55 TIVEITF---GDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 55 TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
++|+|.+ .+++|++.++.++|.+.|+++..-.-++
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 4566743 4789999999999999999997654433
No 125
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=69.29 E-value=9.6 Score=33.53 Aligned_cols=35 Identities=9% Similarity=0.267 Sum_probs=28.6
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEE
Q 033987 50 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 50 ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 84 (106)
.....|-|-+.-.|++|.|+++.+.|++.|+|+.+
T Consensus 27 ~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLTh 61 (464)
T TIGR01270 27 EGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILH 61 (464)
T ss_pred CCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEE
Confidence 34445666666789999999999999999999874
No 126
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.93 E-value=13 Score=21.41 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=24.6
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCcEEEEEE
Q 033987 56 IVEITF---GDRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 56 VVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
.|.|.+ .+.+|++.++.+.|.+.|+++..-.
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 345543 4679999999999999999996654
No 127
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=67.56 E-value=11 Score=32.56 Aligned_cols=47 Identities=26% Similarity=0.298 Sum_probs=36.4
Q ss_pred EEEEeC---CCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 43 KVIIDL---DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 43 rV~IDN---~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
.+.||. +.++....+=+...||||.+..++..|.+.|+||..-.++=
T Consensus 438 I~~ing~~v~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r 487 (526)
T PRK13581 438 IVEIDGYRVDAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGR 487 (526)
T ss_pred EEEECCEEEEeeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEecc
Confidence 445554 34555666666779999999999999999999998877754
No 128
>PLN02317 arogenate dehydratase
Probab=66.86 E-value=10 Score=32.38 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=28.6
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
.|-|-+.-.|+||.|+++..+|+..|+|+.+=.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIE 315 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIE 315 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 477777778999999999999999999987643
No 129
>PRK06635 aspartate kinase; Reviewed
Probab=64.03 E-value=12 Score=30.59 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=29.2
Q ss_pred CCcEEEEEEe---CCcccHHHHHHHHHHhCCcEEEEE
Q 033987 52 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 52 ~~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
++.+++.|.+ .++||.+.++.++|.+.|++|..-
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 3567788876 689999999999999999999774
No 130
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=63.90 E-value=15 Score=23.20 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.8
Q ss_pred EEEEEE---eCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 55 TIVEIT---FGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 55 TVVEV~---a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
++|.|. -.+.+|++.++.++|.+.|+++..-
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i 35 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI 35 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 456663 3677999999999999999999543
No 131
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=63.42 E-value=18 Score=20.77 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCcccHHHHHHHHHHhCCcEEEEEE
Q 033987 62 GDRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 62 ~DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
.+.+|++.++.+.|.+.|+++..-.
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEE
Confidence 4679999999999999999997664
No 132
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.17 E-value=9 Score=24.75 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.2
Q ss_pred eCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 61 FGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 61 a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
-.+.+|++.++-++|.+.|++|..=
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI 35 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLV 35 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 4588999999999999999999864
No 133
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=63.02 E-value=15 Score=32.10 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=32.8
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec---CCceeEEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD---SSGKHNKFAI 100 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~---Ger~~DvFYV 100 (106)
.|-|-+.-.|+||.|+++.+.|++.|+|+.+ |.+- +....=.|||
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLth--IESRPsk~~~~eY~FFV 63 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTH--IESRPSKTHPGEYEFFV 63 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeE--EecccCCCCCccEEEEE
Confidence 4666677799999999999999999999874 4442 2222335666
No 134
>PRK08526 threonine dehydratase; Provisional
Probab=62.79 E-value=13 Score=31.08 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=32.5
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
+.+.--+.|.-.||||-|.++.+.+.+.|.||..-.-
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~ 359 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDY 359 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEE
Confidence 5677889999999999999999999999999876443
No 135
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=56.68 E-value=13 Score=28.42 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=26.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
-+.++-.||.|.|.++-+++++.++||-.-+
T Consensus 74 TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~ 104 (150)
T COG4492 74 TLSLSLEDRVGILSDVLDVIAREEINVLTIH 104 (150)
T ss_pred EEEEEEhhhhhhHHHHHHHHHHhCCcEEEEe
Confidence 3567788999999999999999999986543
No 136
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=55.55 E-value=14 Score=31.88 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE--ecCCceeE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF--LDSSGKHN 96 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is--T~Ger~~D 96 (106)
++...++=+.-.||||.+..+++.|.+.++||..-.+. ..|+.++=
T Consensus 448 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~ 495 (525)
T TIGR01327 448 EPEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALM 495 (525)
T ss_pred ecCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEE
Confidence 34455555666999999999999999999999877665 33444443
No 137
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=55.48 E-value=23 Score=28.86 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=28.4
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCcEEEE
Q 033987 52 PDATIVEITFG---DRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 52 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~ 84 (106)
.+.++|.|.+. ++||++..+.++|.+.|++|..
T Consensus 335 ~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 335 EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 45677777774 7999999999999999999984
No 138
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=53.96 E-value=13 Score=32.90 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=31.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
+||...||.||..++-..|-.-|+++..-.|.--|
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 79999999999999999999999999998885333
No 139
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.92 E-value=16 Score=24.17 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.6
Q ss_pred eCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 61 FGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 61 a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
-.+.+|.+.++-++|.+.|++|..-
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 4688999999999999999999865
No 140
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=53.00 E-value=33 Score=28.69 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=29.7
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
+.+...+.|...||||-|.++.+.+...+-||..-+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~ 357 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFE 357 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 567789999999999999999996666766887433
No 141
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=51.55 E-value=15 Score=28.54 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=26.9
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
+.|.-.|+||.|+.+-+=|+..|-||..--=+
T Consensus 8 ldIEL~D~PGQLl~vLqPls~~g~NiItIiH~ 39 (170)
T COG2061 8 LDIELKDKPGQLLKVLQPLSKTGANIITIIHS 39 (170)
T ss_pred EEEEecCCCcchhhhhcchhhcCccEEEEEee
Confidence 45777999999999999999999998764433
No 142
>PRK08639 threonine dehydratase; Validated
Probab=50.33 E-value=32 Score=28.74 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=28.3
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
+.+.--+.|.-.||||.|.++.+.+...+-||..-
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~ 367 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRF 367 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 56778899999999999999999555555477654
No 143
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=47.29 E-value=35 Score=34.09 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=32.3
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 50 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 50 ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
.....|+|+|...|+|=|.--|...|.++|+.|+.-
T Consensus 13 w~~~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i 48 (1528)
T PF05088_consen 13 WESDHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLI 48 (1528)
T ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEE
Confidence 344599999999999999999999999999999863
No 144
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=46.79 E-value=20 Score=30.16 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=31.6
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
+.-+|.+.-+|-||.|..|+.+|+.-|.||.+--|-
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc 111 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVC 111 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeee
Confidence 455788999999999999999999999999876653
No 145
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.76 E-value=52 Score=20.16 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=21.5
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCcEE
Q 033987 56 IVEITFG---DRLGALLDTMNALKNLGLNV 82 (106)
Q Consensus 56 VVEV~a~---DRpGLL~di~~aL~dLgL~I 82 (106)
+|.|.+. +.+|++..+.++|.+.|+.+
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4556554 67999999999999987666
No 146
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=44.43 E-value=51 Score=23.12 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=32.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec--CCce
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGK 94 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Ger~ 94 (106)
-+.+.+.+|||+|..+-++-..-|..+-.-..++- ++++
T Consensus 5 qldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~ 45 (86)
T COG3978 5 QLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNA 45 (86)
T ss_pred EEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccc
Confidence 46789999999999999999999999877666654 4443
No 147
>PF05117 DUF695: Family of unknown function (DUF695) ; InterPro: IPR016097 This entry is found at the N terminus of a number of proteobacterial proteins of unknown function.
Probab=44.26 E-value=51 Score=22.95 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeec
Q 033987 69 LDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 103 (106)
Q Consensus 69 ~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~ 103 (106)
-.|...|.+.+..|..++++++|.| .=.||+.|.
T Consensus 66 d~i~~~l~~~~~~i~vG~~t~~g~r-~~~fY~~d~ 99 (136)
T PF05117_consen 66 DAIIEALEADGNAIYVGRITGNGRR-EFYFYCKDP 99 (136)
T ss_pred HHHHHHhhcCCcceEEEEEEECCEE-EEEEEECCh
Confidence 3466778888999999999999986 557998775
No 148
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=43.75 E-value=29 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=21.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVV 83 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~ 83 (106)
++.+...|+.+++ ++++.|.++|+.|-
T Consensus 4 lisv~~~dk~~~~-~~a~~l~~~G~~i~ 30 (116)
T cd01423 4 LISIGSYSKPELL-PTAQKLSKLGYKLY 30 (116)
T ss_pred EEecCcccchhHH-HHHHHHHHCCCEEE
Confidence 4566667888777 88899999998884
No 149
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=43.69 E-value=24 Score=27.09 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
++.+-=.|.||.|..++..|+..|+||.+=.+
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv 37 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTV 37 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEE
Confidence 45677789999999999999999999987544
No 150
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=41.66 E-value=25 Score=22.61 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=20.6
Q ss_pred CcccHHHHHHHHHHhCCcEEEEE
Q 033987 63 DRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 63 DRpGLL~di~~aL~dLgL~I~~A 85 (106)
-++|++.++-++|.+.|+++..=
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I 35 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLI 35 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEE
Confidence 46999999999999999999754
No 151
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.04 E-value=83 Score=19.15 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=25.6
Q ss_pred EEEEEeC--CcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 56 IVEITFG--DRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 56 VVEV~a~--DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
+|.|.+. ..+|++.++-++|.+.|++|..-.-++
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3444443 468999999999999999997665543
No 152
>PRK08210 aspartate kinase I; Reviewed
Probab=40.86 E-value=57 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=28.5
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCcEEEE
Q 033987 52 PDATIVEITFG---DRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 52 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~ 84 (106)
++.++|.|.+. ++||++.++.++|.+.|++|..
T Consensus 337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 46677778775 7999999999999999999974
No 153
>PRK06635 aspartate kinase; Reviewed
Probab=40.50 E-value=71 Score=26.09 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=26.5
Q ss_pred cEEEEEE-eCCcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 54 ATIVEIT-FGDRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 54 ~TVVEV~-a~DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
..+|.|. -.+++|.|.++.++|.+.|++|..-.-
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~ 296 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQ 296 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEe
Confidence 3444443 467899999999999999999996433
No 154
>PRK08210 aspartate kinase I; Reviewed
Probab=40.42 E-value=55 Score=26.89 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=30.4
Q ss_pred CCcEEEEEEeCCc-ccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 52 PDATIVEITFGDR-LGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 52 ~~~TVVEV~a~DR-pGLL~di~~aL~dLgL~I~~A~Is 88 (106)
.+-..|+|...+. +|.|.+|..+|.+.|++|..-..+
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 4567788877665 999999999999999999976443
No 155
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.22 E-value=93 Score=18.58 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCcE
Q 033987 55 TIVEITFG---DRLGALLDTMNALKNLGLN 81 (106)
Q Consensus 55 TVVEV~a~---DRpGLL~di~~aL~dLgL~ 81 (106)
.+|.|.+. +++|++.++.++|.+.++.
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~i~i~ 31 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALEDINVR 31 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHhCCeE
Confidence 45666665 7899999999999874443
No 156
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=37.08 E-value=65 Score=26.88 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=29.3
Q ss_pred CCcEEEEEEe---CCcccHHHHHHHHHHhCCcEEEEEE
Q 033987 52 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 52 ~~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
++.++|.|.+ .++||++.++.++|++.|++|..-.
T Consensus 376 ~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 376 KGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 4667888865 3789999999999999999997654
No 157
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=36.75 E-value=38 Score=21.12 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.6
Q ss_pred CcccHHHHHHHHHHhCCcEEEEEE
Q 033987 63 DRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 63 DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
+.+|.+.++-+.|.+.|++|..=.
T Consensus 11 ~~~~~~a~if~~La~~~InvDmI~ 34 (67)
T cd04914 11 NENDLQQRVFKALANAGISVDLIN 34 (67)
T ss_pred CCccHHHHHHHHHHHcCCcEEEEE
Confidence 669999999999999999998773
No 158
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=36.45 E-value=63 Score=32.68 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=40.0
Q ss_pred CEEEEeCCCCCCc--EEEEEEeCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 42 PKVIIDLDSDPDA--TIVEITFGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 42 prV~IDN~ss~~~--TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
|.|.++....++- |+++|...|.|=|.--|+-.|+++|+.++..
T Consensus 74 ~~V~v~~~v~~~g~~~~l~Iv~~~~pfl~Dsv~~~l~~~~~~~~~~ 119 (1592)
T COG2902 74 PCVRVYPGVAEHGPVTALQIVLDNMPFLVDSVMGELTRLGLQIHLL 119 (1592)
T ss_pred ceEEecCCcccCCCceeEEEEcCCCCeeehhHHHHHHhcccceEEE
Confidence 7888887777776 9999999999999999999999999999865
No 159
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=36.11 E-value=59 Score=25.35 Aligned_cols=25 Identities=20% Similarity=0.614 Sum_probs=20.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVV 83 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~ 83 (106)
+|.|. ||.|++ ++++.|.++|..|.
T Consensus 4 LISVs--DK~~l~-~lAk~L~~lGf~I~ 28 (187)
T cd01421 4 LISVS--DKTGLV-EFAKELVELGVEIL 28 (187)
T ss_pred EEEEe--CcccHH-HHHHHHHHCCCEEE
Confidence 45555 688855 99999999999995
No 160
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=34.39 E-value=1.2e+02 Score=19.05 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=32.5
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 52 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 52 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
.....+-+...| +.+..+.|..+|.++........| -...||+.|.+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~DPd 106 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPG--VGRFAVFADPE 106 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCC--cEEEEEEECCC
Confidence 344445555566 778888999999999877544332 23589999976
No 161
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=34.27 E-value=73 Score=25.99 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=28.2
Q ss_pred CCcEEEEEE---eCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 52 PDATIVEIT---FGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 52 ~~~TVVEV~---a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
.+..+|.|. -.+++|.|.++.++|.+.|++|..-
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i 294 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLI 294 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 356777777 4678999999999999999999743
No 162
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=33.52 E-value=1.2e+02 Score=18.85 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCcEEEEEEEEecCC-ceeEEEEEeecc
Q 033987 68 LLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITKAY 104 (106)
Q Consensus 68 L~di~~aL~dLgL~I~~A~IsT~Ge-r~~DvFYVTD~~ 104 (106)
+.++.+.|.+.|+.+..+-....|. .....||++|.+
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPd 116 (125)
T cd07253 79 IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPD 116 (125)
T ss_pred HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCC
Confidence 7888999999999987665544332 345678999876
No 163
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=33.31 E-value=1.2e+02 Score=18.85 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeec
Q 033987 64 RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 103 (106)
Q Consensus 64 RpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~ 103 (106)
.+|-||.+-+.|.+.|+--..-... .+.+..-+|.||+.
T Consensus 30 ~~g~lY~~L~~Le~~gli~~~~~~~-~~~~~rk~Y~iT~~ 68 (75)
T PF03551_consen 30 SPGSLYPALKRLEEEGLIESRWEEE-GNGRPRKYYRITEK 68 (75)
T ss_dssp THHHHHHHHHHHHHTTSEEEEEEEE-TTSSEEEEEEESHH
T ss_pred ChhHHHHHHHHHHhCCCEEEeeecc-CCCCCCEEEEECHH
Confidence 4899999999999999977766665 56666777878864
No 164
>PRK06291 aspartate kinase; Provisional
Probab=32.87 E-value=76 Score=26.95 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=29.3
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCcEEEEEE
Q 033987 52 PDATIVEITFG---DRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 52 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
++.++|.|.+. +++|.+.++.++|.+.|++|..-.
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIs 356 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMIS 356 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 45678888764 789999999999999999998653
No 165
>PRK09224 threonine dehydratase; Reviewed
Probab=31.30 E-value=2.7e+02 Score=24.16 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=26.6
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 84 (106)
..+.-.+.|.-.||||-|.++.+.|. +-||..
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~--~~nIte 356 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLG--GRNVTE 356 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEE
Confidence 34677999999999999999999999 455554
No 166
>PRK12483 threonine dehydratase; Reviewed
Probab=30.77 E-value=2.4e+02 Score=24.86 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=28.1
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
..+.-.+.|.-.||||-|.++.+.|... ||..-
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~ 374 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEF 374 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEE
Confidence 5577889999999999999999999988 66543
No 167
>PRK08841 aspartate kinase; Validated
Probab=29.35 E-value=97 Score=26.02 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=30.0
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEE
Q 033987 52 PDATIVEITFGDRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 52 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 84 (106)
.+..+|.|.+...+|++..+.++|.+.|++|..
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~ 348 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQ 348 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEE
Confidence 567899999999999999999999999999954
No 168
>PRK07431 aspartate kinase; Provisional
Probab=29.25 E-value=99 Score=26.90 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCcEEEEEE
Q 033987 52 PDATIVEITFG---DRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 52 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
+..++|.|.+. .+||++.++.++|.+.|++|+...
T Consensus 517 ~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 517 PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 56788999886 899999999999999999996654
No 169
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=29.22 E-value=1.4e+02 Score=20.90 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=27.6
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 50 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 50 ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
.|.++||=-+.....+..+.++.+.|.+||+.+...
T Consensus 49 ~sGnsTiRv~~~~~~~~~~~~v~~~l~~lG~~~E~~ 84 (117)
T PF14085_consen 49 SSGNSTIRVIFDDPGPDDIEAVREELEALGCTVEGF 84 (117)
T ss_pred cCCCEEEEEEEcCCcchhHHHHHHHHHHcCCeEEcc
Confidence 477887765555555568999999999999987653
No 170
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=28.66 E-value=47 Score=21.35 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCcEEE
Q 033987 68 LLDTMNALKNLGLNVV 83 (106)
Q Consensus 68 L~di~~aL~dLgL~I~ 83 (106)
||||+.+|..+||--.
T Consensus 46 lYDI~NVLealgli~K 61 (71)
T PF02319_consen 46 LYDIINVLEALGLIEK 61 (71)
T ss_dssp HHHHHHHHHHCTSEEE
T ss_pred hhHHHHHHHHhCceee
Confidence 8999999999998543
No 171
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=28.25 E-value=15 Score=26.34 Aligned_cols=18 Identities=56% Similarity=0.759 Sum_probs=11.3
Q ss_pred CcccHHHHHHHHHHhCCcE
Q 033987 63 DRLGALLDTMNALKNLGLN 81 (106)
Q Consensus 63 DRpGLL~di~~aL~dLgL~ 81 (106)
||+ --|||+++|++|||+
T Consensus 53 dRl-ykydIT~~l~~l~l~ 70 (103)
T PF14830_consen 53 DRL-YKYDITDALKKLGLH 70 (103)
T ss_dssp SS--EEEE-HHHHHHCT--
T ss_pred Ccc-chhhHHHHHHHcCCC
Confidence 444 347999999999998
No 172
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.53 E-value=1.4e+02 Score=18.89 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHhCCcEEEEEEEEec-C-CceeEEEEEeecc
Q 033987 66 GALLDTMNALKNLGLNVVKANVFLD-S-SGKHNKFAITKAY 104 (106)
Q Consensus 66 GLL~di~~aL~dLgL~I~~A~IsT~-G-er~~DvFYVTD~~ 104 (106)
.-|.++.+-|.+.|+.+...-.... | .+....||++|.+
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPd 116 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPS 116 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCC
Confidence 4588999999999999886543322 1 1335679999876
No 173
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=27.27 E-value=32 Score=22.03 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=17.1
Q ss_pred EeCCcccHHHHHHHHHHhCCcEE
Q 033987 60 TFGDRLGALLDTMNALKNLGLNV 82 (106)
Q Consensus 60 ~a~DRpGLL~di~~aL~dLgL~I 82 (106)
.++..|- +.|+..+|.++|+++
T Consensus 54 ~gRt~~~-~~Dv~~al~~~gi~v 75 (77)
T PF07524_consen 54 AGRTEPN-LQDVEQALEEMGISV 75 (77)
T ss_pred cCCCCCC-HHHHHHHHHHhCCCC
Confidence 3444555 899999999999976
No 174
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=26.98 E-value=1.9e+02 Score=29.23 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=42.7
Q ss_pred CCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEE---EEe-cCC-ceeEEEEEeec
Q 033987 49 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKAN---VFL-DSS-GKHNKFAITKA 103 (106)
Q Consensus 49 ~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~---IsT-~Ge-r~~DvFYVTD~ 103 (106)
...+....+.++...++..|.++.-+|.+|||.|...+ |.. +|+ ..+.-|++...
T Consensus 484 ~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~ 543 (1528)
T PF05088_consen 484 GAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP 543 (1528)
T ss_pred CCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC
Confidence 33456789999999999999999999999999998774 554 233 34777777544
No 175
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=26.18 E-value=1.6e+02 Score=24.09 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=44.1
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCc-------ccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEee
Q 033987 42 PKVIIDLDSDPDATIVEITFGDR-------LGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 102 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DR-------pGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD 102 (106)
--|+|-..++++..+..+.+.+. ..||..+-++=+++|+.+|.+.+- ..|+||=.|
T Consensus 102 ~DvVia~~A~tds~~~~~~f~~~df~~~ad~~Ll~~a~~~A~e~gi~~hvgnv~-----ssD~FY~~~ 164 (236)
T COG0813 102 RDVVIAQGASTDSNVNRIRFKPHDFAPIADFELLEKAYETAKELGIDTHVGNVF-----SSDLFYNPD 164 (236)
T ss_pred ceEEEeccccCcchhhhcccCcccccccCCHHHHHHHHHHHHHhCCceeeeeee-----eeecccCCC
Confidence 46777777777777766655543 479999999999999999998886 589999654
No 176
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=26.12 E-value=1.3e+02 Score=19.47 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHHhCCcEEEEEEEEecC--CceeEEEEE
Q 033987 70 DTMNALKNLGLNVVKANVFLDS--SGKHNKFAI 100 (106)
Q Consensus 70 di~~aL~dLgL~I~~A~IsT~G--er~~DvFYV 100 (106)
+|.+.|.++|..|...+--..+ ..-..-|||
T Consensus 3 ~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~v 35 (68)
T PF07530_consen 3 EIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFV 35 (68)
T ss_pred HHHHHHHHcCCceEEEEccccCCCCCCceEEEE
Confidence 6889999999999988877776 445788887
No 177
>PRK09034 aspartate kinase; Reviewed
Probab=25.48 E-value=1.1e+02 Score=25.98 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=28.4
Q ss_pred CCcEEEEEEe---CCcccHHHHHHHHHHhCCcEEEEE
Q 033987 52 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 52 ~~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
.+-++|.|.. .+++|.+.++.++|.+.|++|..-
T Consensus 306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i 342 (454)
T PRK09034 306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM 342 (454)
T ss_pred CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 3457777775 578999999999999999999874
No 178
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=25.12 E-value=1.7e+02 Score=17.95 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=25.2
Q ss_pred EEEEEEeC--CcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 55 TIVEITFG--DRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 55 TVVEV~a~--DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
.+|.|.+. .++|++.++.++|.+.|+++..-.-
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~ 37 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQ 37 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEe
Confidence 45555553 3689999999999999999965443
No 179
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=24.91 E-value=1.1e+02 Score=20.25 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVV 83 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~ 83 (106)
++.+...|+.-++ .+++.|.++|..|.
T Consensus 4 l~s~~~~~k~~~~-~~~~~l~~~G~~l~ 30 (110)
T cd01424 4 FISVADRDKPEAV-EIAKRLAELGFKLV 30 (110)
T ss_pred EEEEEcCcHhHHH-HHHHHHHHCCCEEE
Confidence 5667777887555 88888888888884
No 180
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=24.46 E-value=1.8e+02 Score=17.96 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 67 ALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 67 LL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
=|.++.+.|++.|+.+....-....+ ..=.||++|.+
T Consensus 86 dl~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~y~~Dp~ 122 (128)
T PF00903_consen 86 DLDAAYERLKAQGVEIVEEPDRYYFG-SGYSFYFRDPD 122 (128)
T ss_dssp HHHHHHHHHHHTTGEEEEEEEEHSTT-CEEEEEEEETT
T ss_pred HHHHHHHHHhhcCccEEecCCCCCCC-CEEEEEEECCC
Confidence 35778899999999999886544443 34445888875
No 181
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=24.03 E-value=1e+02 Score=23.05 Aligned_cols=49 Identities=16% Similarity=0.061 Sum_probs=36.1
Q ss_pred CcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 38 TIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 38 ~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
++| -.|.++...+ -.++=....-|-+|+|..|.|.|++-|+-|-. |+|+
T Consensus 52 ~vp-~~V~~~~GW~-~lk~~gpf~FgltGilasV~~pLsd~gigIFa--vSty 100 (128)
T COG3603 52 RVP-DVVQIEKGWS-CLKFEGPFDFGLTGILASVSQPLSDNGIGIFA--VSTY 100 (128)
T ss_pred cCC-cceEecCCeE-EEEEeccccCCcchhhhhhhhhHhhCCccEEE--EEec
Confidence 666 6777776654 23444556679999999999999999998864 4543
No 182
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=23.72 E-value=1.9e+02 Score=18.98 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=24.3
Q ss_pred EEEEEEeCC---cccHHHHHHHHHHhCCcEEEEE
Q 033987 55 TIVEITFGD---RLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 55 TVVEV~a~D---RpGLL~di~~aL~dLgL~I~~A 85 (106)
+.+||+..| ++|.-++|.++|.+.+++|..=
T Consensus 2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K 35 (71)
T cd04910 2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAK 35 (71)
T ss_pred eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEE
Confidence 346676665 4778899999999999998654
No 183
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=23.44 E-value=1.9e+02 Score=17.78 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 66 GALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 66 GLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
-=|-++.+.|.++|+.+...-..... -.-.||+.|.+
T Consensus 65 ~dv~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~DPd 101 (108)
T PF12681_consen 65 EDVDALYERLKELGAEIVTEPRDDPW--GQRSFYFIDPD 101 (108)
T ss_dssp SHHHHHHHHHHHTTSEEEEEEEEETT--SEEEEEEE-TT
T ss_pred cCHHHHHHHHHHCCCeEeeCCEEcCC--CeEEEEEECCC
Confidence 34667778899999998776555433 34689999876
No 184
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.43 E-value=2.2e+02 Score=18.59 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=23.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
++.|..+.|||.|....+.|.. +-+|..=+
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~ 32 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELLP-KWNITLFH 32 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC-CCeEeEEE
Confidence 5778999999999999998853 55665433
No 185
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=23.43 E-value=1.3e+02 Score=20.42 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=19.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVV 83 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~ 83 (106)
.+.|.-.|+..++ ++++.|.++|..|-
T Consensus 3 ~isv~d~~K~~~~-~~a~~l~~~G~~i~ 29 (112)
T cd00532 3 FLSVSDHVKAMLV-DLAPKLSSDGFPLF 29 (112)
T ss_pred EEEEEcccHHHHH-HHHHHHHHCCCEEE
Confidence 4566666776666 88888888888874
No 186
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=23.37 E-value=1.4e+02 Score=18.77 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=28.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
+-+...| +.++.+.|...|+.+...... ..+..-.||+.|.+
T Consensus 61 i~~~v~d----~~~~~~~l~~~G~~~~~~~~~--~~~g~~~~~~~DP~ 102 (112)
T cd07238 61 LSIEVDD----VDAALARAVAAGFAIVYGPTD--EPWGVRRFFVRDPF 102 (112)
T ss_pred EEEEeCC----HHHHHHHHHhcCCeEecCCcc--CCCceEEEEEECCC
Confidence 4444445 567788899999998764432 23445679999875
No 187
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=23.11 E-value=1.8e+02 Score=19.54 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=25.5
Q ss_pred HHHHHHHhCCcEEEEEEEEecCCc--eeEEEEE
Q 033987 70 DTMNALKNLGLNVVKANVFLDSSG--KHNKFAI 100 (106)
Q Consensus 70 di~~aL~dLgL~I~~A~IsT~Ger--~~DvFYV 100 (106)
.|-+.|+++|+.+..++--..+++ -+.-|+|
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~v 35 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEV 35 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCcceeEEE
Confidence 678999999999999998887773 3677776
No 188
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.03 E-value=1.9e+02 Score=17.68 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 68 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 68 L~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
+.++.+.|.++|+.+..... ...+ ...||++|.+
T Consensus 78 i~~~~~~l~~~g~~~~~~~~--~~~~-~~~~~~~DP~ 111 (119)
T cd07263 78 IDATYEELKARGVEFSEEPR--EMPY-GTVAVFRDPD 111 (119)
T ss_pred HHHHHHHHHhCCCEEeeccc--cCCC-ceEEEEECCC
Confidence 78888999999998887552 2333 4689999876
No 189
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.88 E-value=1.6e+02 Score=18.58 Aligned_cols=48 Identities=8% Similarity=0.096 Sum_probs=30.1
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..+-+-+...|+..+ ..+.+.|.++|..+...-.....++ .||++|.+
T Consensus 59 ~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPd 106 (114)
T cd07261 59 GGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPD 106 (114)
T ss_pred CceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECCC
Confidence 345556666664444 5566677789999876543333233 58899876
No 190
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=22.84 E-value=4.2e+02 Score=23.06 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=27.0
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 84 (106)
..+--.+.|.-+||||-|.++.++|... ||..
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~~--nIte 353 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGNR--NITE 353 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--ceEE
Confidence 3577889999999999999999999984 5543
No 191
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=22.69 E-value=1e+02 Score=21.64 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEe
Q 033987 67 ALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 101 (106)
Q Consensus 67 LL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVT 101 (106)
-++++..+|.++|+.+.--. +|+|-.+-+|-.
T Consensus 37 T~Qd~i~aL~~~~I~~~Fvq---~G~R~~~GyY~i 68 (90)
T PF09904_consen 37 TIQDTIKALPELGIECEFVQ---DGERNNAGYYRI 68 (90)
T ss_dssp HHHHHHHGGGGGT-EEEEE-----TTS-S--EEEE
T ss_pred HHHHHHHHhhcCCeEEEEEe---cCccCCCCcEEe
Confidence 36889999999998887655 899988888853
No 192
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=22.35 E-value=2.2e+02 Score=18.14 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=25.0
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
.+|--+.+..+.||=.+++..|+..|..+...
T Consensus 4 v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~ 35 (90)
T PF13399_consen 4 VRVEVLNGTGVSGLAARVADALRNRGFTVVEV 35 (90)
T ss_pred eEEEEEECcCCcCHHHHHHHHHHHCCCceeec
Confidence 34555667778999999999999999988543
No 193
>PRK09084 aspartate kinase III; Validated
Probab=22.26 E-value=1.5e+02 Score=25.28 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=29.5
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCcEEEEEE
Q 033987 52 PDATIVEITFG---DRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 52 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
.+-++|.|... +.+|.+.++..+|.+.|++|..-.
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ 341 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT 341 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe
Confidence 45678888754 689999999999999999998654
No 194
>PRK00907 hypothetical protein; Provisional
Probab=22.03 E-value=1.8e+02 Score=20.06 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=29.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEE----EecCCc
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANV----FLDSSG 93 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~I----sT~Ger 93 (106)
-++|.+.++++|...|.+++....-......| |+.|..
T Consensus 19 piKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY 60 (92)
T PRK00907 19 ELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKY 60 (92)
T ss_pred eEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEE
Confidence 47899999999999999999988765555555 555553
No 195
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=21.87 E-value=2.1e+02 Score=19.03 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=28.6
Q ss_pred cccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeec
Q 033987 64 RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 103 (106)
Q Consensus 64 RpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~ 103 (106)
.+|-||-+.+-|.+.|+-... -....+++..-.|.+|+.
T Consensus 38 ~~gtlY~~L~rLe~~GlI~~~-~~~~~~~~~rk~y~iT~~ 76 (100)
T TIGR03433 38 EEGSLYPALHRLERRGWIAAE-WGESENNRRAKFYRLTAA 76 (100)
T ss_pred CCCcHHHHHHHHHHCCCeEEE-eeecCCCCCceEEEECHH
Confidence 468999999999999976553 334455565678888874
No 196
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=21.82 E-value=1.8e+02 Score=18.11 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 67 ALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 67 LL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
-|..+.+.|.++|+.+..... ...+..-.||+.|.+
T Consensus 70 ~v~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~DP~ 105 (117)
T cd07240 70 DLEALAAHLEAAGVAPEEASD--PEPGVGRGLRFQDPD 105 (117)
T ss_pred HHHHHHHHHHHcCCceEEcCc--cCCCCceEEEEECCC
Confidence 466788889999998865433 222334678998875
No 197
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=20.84 E-value=93 Score=18.70 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=10.3
Q ss_pred HHHHHHHhCCcEEE
Q 033987 70 DTMNALKNLGLNVV 83 (106)
Q Consensus 70 di~~aL~dLgL~I~ 83 (106)
.+.++|+++||++.
T Consensus 25 yl~~~~~~mgl~vd 38 (38)
T PF09198_consen 25 YLFKCISDMGLNVD 38 (38)
T ss_dssp HHHHHHHTTT-EEE
T ss_pred eHHHHHHHhCCCCC
Confidence 46788999999873
No 198
>PRK07431 aspartate kinase; Provisional
Probab=20.72 E-value=1.8e+02 Score=25.32 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCcEEEEEE
Q 033987 52 PDATIVEITFG---DRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 52 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
++.++|.|.+. +++|++..+.++|.+.|++|..-.
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~ 383 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS 383 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence 46788888886 799999999999999999997544
No 199
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=20.66 E-value=2.1e+02 Score=17.16 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 68 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 68 L~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
+.++.+.|.++|..+....-. .+-...||+.|.+
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~DP~ 108 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP---GDGVRQLFVRDPD 108 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC---CCCccEEEEECCC
Confidence 778899999999998765432 2334578898875
No 200
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=20.00 E-value=2.9e+02 Score=26.94 Aligned_cols=62 Identities=11% Similarity=-0.048 Sum_probs=43.9
Q ss_pred CEEEEeCCCCCCcEEEEE----EeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCc-eeEEEEEeec
Q 033987 42 PKVIIDLDSDPDATIVEI----TFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG-KHNKFAITKA 103 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV----~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger-~~DvFYVTD~ 103 (106)
|.+.+........++--+ ...-..|+|..++..+.-+||.+.++++.++... .+=.|||+-.
T Consensus 217 ~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~ 283 (1002)
T PTZ00324 217 PVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGL 283 (1002)
T ss_pred CeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecC
Confidence 566555444333443333 3445578999999999999999999999998665 4558888643
Done!