BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033991
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TSQ|A Chain A, Crystal Structure Of E. Coli Hypf With Atp And Carbamoyl
           Phosphate
 pdb|3TTD|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Cpp And
           Carbamoyl Phosphate
          Length = 658

 Score = 27.7 bits (60), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 24  QYRGLLKIMEDEFSNPPMNVVIELLLGLVLCMWAA 58
           Q+R  L++M++ ++  P  VV +   G V C WA+
Sbjct: 341 QWREALRLMQNIYNFTPQYVVHDAHPGYVSCQWAS 375


>pdb|3TSP|A Chain A, Crystal Structure Of E. Coli Hypf
 pdb|3TSU|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Pnp And
           Carbamoyl Phosphate
 pdb|3TTC|A Chain A, Crystal Structure Of E. Coli Hypf With Adp And Carbamoyl
           Phosphate
 pdb|3TTF|A Chain A, Crystal Structure Of E. Coli Hypf With Amp And Carbamoyl
           Phosphate
          Length = 657

 Score = 27.7 bits (60), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 24  QYRGLLKIMEDEFSNPPMNVVIELLLGLVLCMWAA 58
           Q+R  L++M++ ++  P  VV +   G V C WA+
Sbjct: 341 QWREALRLMQNIYNFTPQYVVHDAHPGYVSCQWAS 375


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,068,473
Number of Sequences: 62578
Number of extensions: 107967
Number of successful extensions: 237
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 4
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)