Query 033991
Match_columns 106
No_of_seqs 101 out of 160
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:34:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3918 Predicted membrane pro 100.0 1.1E-35 2.3E-40 208.6 7.4 103 1-103 1-107 (129)
2 PF10270 MMgT: Membrane magnes 100.0 2.9E-35 6.2E-40 203.4 6.7 91 7-97 1-106 (106)
3 PF13999 MarB: MarB protein 50.0 27 0.00058 22.5 3.2 48 48-95 4-51 (66)
4 PF11119 DUF2633: Protein of u 48.1 56 0.0012 20.6 4.4 30 3-32 9-42 (59)
5 PF12263 DUF3611: Protein of u 47.8 1.2E+02 0.0026 22.9 8.3 58 3-60 57-117 (183)
6 PRK13553 fumarate reductase cy 43.8 1.6E+02 0.0034 23.6 7.4 55 4-62 78-143 (258)
7 PF13633 N_methyl_3: Prokaryot 43.2 47 0.001 17.1 2.9 18 44-61 3-20 (22)
8 PF07172 GRP: Glycine rich pro 41.8 66 0.0014 21.7 4.4 24 1-25 1-28 (95)
9 TIGR02523 type_IV_pilV type IV 40.7 29 0.00063 24.8 2.6 19 44-62 6-24 (139)
10 COG4967 PilV Tfp pilus assembl 39.0 21 0.00046 26.6 1.7 20 44-63 14-33 (162)
11 PF11309 DUF3112: Protein of u 23.3 1.1E+02 0.0023 22.5 3.1 47 41-90 93-139 (160)
12 PF12937 F-box-like: F-box-lik 22.3 70 0.0015 17.8 1.6 12 37-48 2-13 (47)
13 PF13544 N_methyl_2: Type IV p 20.8 1.2E+02 0.0025 16.2 2.2 12 44-55 18-29 (31)
14 PF13120 DUF3974: Domain of un 20.5 95 0.0021 21.8 2.3 17 1-17 1-18 (126)
No 1
>KOG3918 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=208.58 Aligned_cols=103 Identities=26% Similarity=0.437 Sum_probs=98.4
Q ss_pred Cc--hhhHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCceecCccccc--CC
Q 033991 1 MG--SGFIVGVLGVSILAHAAYSTVQYRGLLKIMEDEFSNPPMNVVIELLLGLVLCMWAALTVPGKFLSIHPDSEE--NR 76 (106)
Q Consensus 1 M~--~s~~l~~vG~llL~HA~YSa~e~r~~lk~~~~~~~~lP~DI~~E~l~~~~l~~~G~v~~a~~fk~I~~~~e~--~~ 76 (106)
|+ +.+.++.+|++.|+||||||.|||.|++++|+|+.+||.||++|+++++++.|+|++..+|+||.|++++++ ++
T Consensus 1 Mas~l~~~l~~i~lfaLaHaAfSAAqHR~YlRLTEqe~~sLP~DivlQTvisli~~iYgi~~iag~Fk~i~at~~~~~kt 80 (129)
T KOG3918|consen 1 MASTLYRLLTIISLFALAHAAFSAAQHRFYLRLTEQEFISLPSDIVLQTVISLIALIYGISFIAGPFKFIKATDQHHDKT 80 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcHHHHHHHHHHHHHHHHhHHHHcchHHhhhhHHHHhhhh
Confidence 66 889999999999999999999999999999999999999999999999999999999999999999998875 69
Q ss_pred cccCCCCCCceeecccccccccchhhh
Q 033991 77 MVSLPGNLDFMIFNHRAKVFRSEIDMK 103 (106)
Q Consensus 77 ~d~~~~r~~F~~fnhRg~~l~~~~~~~ 103 (106)
||++.|.|+|++||||||+++|++.|.
T Consensus 81 ~Dtl~N~PSFy~FnhRgral~P~~t~~ 107 (129)
T KOG3918|consen 81 CDTLLNCPSFYTFNHRGRALSPEFTML 107 (129)
T ss_pred HHHHhCCCceEeecccccccCcccccc
Confidence 999999999999999999999988764
No 2
>PF10270 MMgT: Membrane magnesium transporter; InterPro: IPR018937 This entry represents a novel family of membrane magnesium transporters (MMgT) []. The proteins, MMgT1 and MMgT2, are localised to the Golgi complex and post-Golgi vesicles, including the early endosomes, suggesting that they may provide regulated pathways for Mg2+ transport in the Golgi and post-Golgi organelles of epithelium-derived cells [].
Probab=100.00 E-value=2.9e-35 Score=203.43 Aligned_cols=91 Identities=38% Similarity=0.624 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhh-hcCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCceecCc---ccc---------
Q 033991 7 VGVLGVSILAHAAYSTVQYRGLLKI-MEDEFSNPPMNVVIELLLGLVLCMWAALTVPGKFLSIHP---DSE--------- 73 (106)
Q Consensus 7 l~~vG~llL~HA~YSa~e~r~~lk~-~~~~~~~lP~DI~~E~l~~~~l~~~G~v~~a~~fk~I~~---~~e--------- 73 (106)
++++|+++|+||||||+|||+++|. +++++.+||+||++|+++|+++++||+++.+++||||+| ..|
T Consensus 1 l~~iG~llL~HA~YSa~e~~~~lk~~~~~~~~~LP~DI~~E~lv~l~l~~~G~v~~~~~l~~I~~~~~~~~i~~~~~~~~ 80 (106)
T PF10270_consen 1 LTVIGLLLLLHAGYSAYEHRSLLKLNTEQEFSSLPLDIVLETLVSLILFVFGIVLSAGKLKPISWSEYASEIEMNKATNE 80 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHHHHHHHHHHHHHccCCCccccHHHhHHHHhhcccccc
Confidence 4689999999999999999999999 889999999999999999999999999999999999999 333
Q ss_pred --cCCcccCCCCCCceeecccccccc
Q 033991 74 --ENRMVSLPGNLDFMIFNHRAKVFR 97 (106)
Q Consensus 74 --~~~~d~~~~r~~F~~fnhRg~~l~ 97 (106)
.++||.+++||||++||||||.+.
T Consensus 81 ~g~~~~~~~~~rp~F~~~~~rrk~~~ 106 (106)
T PF10270_consen 81 IGNNPFDELESRPSFIDFNHRRKEFA 106 (106)
T ss_pred ccCCCHHHhcCCCChheehhhhhhcC
Confidence 579999999999999999999863
No 3
>PF13999 MarB: MarB protein
Probab=49.97 E-value=27 Score=22.55 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhcCCCceecCcccccCCcccCCCCCCceeecccccc
Q 033991 48 LLGLVLCMWAALTVPGKFLSIHPDSEENRMVSLPGNLDFMIFNHRAKV 95 (106)
Q Consensus 48 l~~~~l~~~G~v~~a~~fk~I~~~~e~~~~d~~~~r~~F~~fnhRg~~ 95 (106)
.+++++..-|....-.+-.|........-.......-+=.+|||+|..
T Consensus 4 a~~LL~L~SGqs~AEQTt~p~~~~~~d~~i~p~~~~~sp~D~nhm~ag 51 (66)
T PF13999_consen 4 ALALLLLFSGQSFAEQTTQPVVQNCRDVMIVPSSHEQSPFDFNHMGAG 51 (66)
T ss_pred HHHHHHHHhhhhhhhccCCccccCCCceEEecCcCCCCCcccccccCC
Confidence 344445555555544555555444332212222222222478999864
No 4
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=48.13 E-value=56 Score=20.63 Aligned_cols=30 Identities=20% Similarity=-0.036 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHH----HHHhHHHHHHHhhhh
Q 033991 3 SGFIVGVLGVSILAH----AAYSTVQYRGLLKIM 32 (106)
Q Consensus 3 ~s~~l~~vG~llL~H----A~YSa~e~r~~lk~~ 32 (106)
.-|.++++..+.|+- ++-.|+.||+..|..
T Consensus 9 mtriVLLISfiIlfgRl~Y~~I~a~~hHq~k~~a 42 (59)
T PF11119_consen 9 MTRIVLLISFIILFGRLIYSAIGAWVHHQDKKQA 42 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 346677777766655 455567899998764
No 5
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=47.81 E-value=1.2e+02 Score=22.87 Aligned_cols=58 Identities=21% Similarity=0.409 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHhhhhc--CCCCCCC-hHHHHHHHHHHHHHHHHHhh
Q 033991 3 SGFIVGVLGVSILAHAAYSTVQYRGLLKIME--DEFSNPP-MNVVIELLLGLVLCMWAALT 60 (106)
Q Consensus 3 ~s~~l~~vG~llL~HA~YSa~e~r~~lk~~~--~~~~~lP-~DI~~E~l~~~~l~~~G~v~ 60 (106)
++..+.+.|++.++=+-|-++.|...-|.-. ++...+| .|+.-..=.|+.+-++|...
T Consensus 57 ~gl~~a~~gl~~l~~si~~~fry~Rlar~L~~~~~~~~P~k~~~~~~l~~Gl~~nl~Gmll 117 (183)
T PF12263_consen 57 IGLFLAICGLVALFFSIFWSFRYTRLARRLRSPNPAKRPSKADVVRLLRIGLIINLVGMLL 117 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999987766532 3333333 66766666666666655543
No 6
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=43.78 E-value=1.6e+02 Score=23.58 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHhHHH-------HHHHhhhh----cCCCCCCChHHHHHHHHHHHHHHHHHhhcC
Q 033991 4 GFIVGVLGVSILAHAAYSTVQ-------YRGLLKIM----EDEFSNPPMNVVIELLLGLVLCMWAALTVP 62 (106)
Q Consensus 4 s~~l~~vG~llL~HA~YSa~e-------~r~~lk~~----~~~~~~lP~DI~~E~l~~~~l~~~G~v~~a 62 (106)
|-...++-+++++||.|-..+ |+.+.+.. ..+. .--++|.+-|++++.++.+..-
T Consensus 78 sl~~~~I~l~~l~Ha~lalrk~P~n~~q~~~~r~h~~~m~H~DT----~lW~~Q~iTG~ilf~~~~~Hl~ 143 (258)
T PRK13553 78 SFVAAGVILIFVVHAFLAMRKFPINYRQYQIFRTHKHLMKHGDT----SLWFIQAFTGFAMFFLASVHLY 143 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhccCCcc----chHHHHHHHHHHHHHHHHHHHH
Confidence 345567888999999998763 33333321 1122 2368999999999999988765
No 7
>PF13633 N_methyl_3: Prokaryotic N-terminal methylation site
Probab=43.23 E-value=47 Score=17.06 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 033991 44 VIELLLGLVLCMWAALTV 61 (106)
Q Consensus 44 ~~E~l~~~~l~~~G~v~~ 61 (106)
.+|+++++++..+|....
T Consensus 3 LIEvlIa~~i~~i~~~g~ 20 (22)
T PF13633_consen 3 LIEVLIAIAILGILALGA 20 (22)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 479999999988887654
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=41.81 E-value=66 Score=21.70 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=13.8
Q ss_pred CchhhHHHHHHHH----HHHHHHHhHHHH
Q 033991 1 MGSGFIVGVLGVS----ILAHAAYSTVQY 25 (106)
Q Consensus 1 M~~s~~l~~vG~l----lL~HA~YSa~e~ 25 (106)
|+ ||.+++++++ ||+=|.-|+.|-
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 66 7777766654 455555555443
No 9
>TIGR02523 type_IV_pilV type IV pilus modification protein PilV. Pilus systems categorized as type IV pilins differ greatly from one another, with some showing greater similarty to type II or type III secretion systems than to each other. Members of this protein family represent the PilV protein of type IV pilus systems as found in Pseudomonas aeruginosa PAO1, Pseudomonas syringae DC3000, Neisseria meningitidis MC58, Xylella fastidiosa 9a5c, etc.
Probab=40.68 E-value=29 Score=24.78 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 033991 44 VIELLLGLVLCMWAALTVP 62 (106)
Q Consensus 44 ~~E~l~~~~l~~~G~v~~a 62 (106)
.+|++++++++.+|++-..
T Consensus 6 LIEvLVAl~Ilaigllg~~ 24 (139)
T TIGR02523 6 MIEVLVALLVLAIGVLGMA 24 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988766
No 10
>COG4967 PilV Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.98 E-value=21 Score=26.57 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 033991 44 VIELLLGLVLCMWAALTVPG 63 (106)
Q Consensus 44 ~~E~l~~~~l~~~G~v~~a~ 63 (106)
.+|++++++++.+|++-.++
T Consensus 14 LIEVLIA~lll~vglLgla~ 33 (162)
T COG4967 14 LIEVLIAMLLLSVGLLGLAG 33 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999998873
No 11
>PF11309 DUF3112: Protein of unknown function (DUF3112); InterPro: IPR021460 This eukaryotic family of proteins has no known function.
Probab=23.33 E-value=1.1e+02 Score=22.53 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCceecCcccccCCcccCCCCCCceeec
Q 033991 41 MNVVIELLLGLVLCMWAALTVPGKFLSIHPDSEENRMVSLPGNLDFMIFN 90 (106)
Q Consensus 41 ~DI~~E~l~~~~l~~~G~v~~a~~fk~I~~~~e~~~~d~~~~r~~F~~fn 90 (106)
..+.+=++.++++++-.++.....|.| +. .+++-....++.-||.||
T Consensus 93 ~k~~il~~ts~lL~~ga~~R~~~~f~~-~~--~~~~~~w~~ska~fYi~~ 139 (160)
T PF11309_consen 93 TKIIILIITSLLLTLGAIFRAGVAFQP-RP--VNNPSAWYHSKAAFYIFN 139 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEecc-cC--CCCCCcccccceeeeeec
Confidence 444444444444444444444445777 21 122334567788888876
No 12
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=22.32 E-value=70 Score=17.78 Aligned_cols=12 Identities=25% Similarity=0.622 Sum_probs=9.1
Q ss_pred CCCChHHHHHHH
Q 033991 37 SNPPMNVVIELL 48 (106)
Q Consensus 37 ~~lP~DI~~E~l 48 (106)
..||-||..+++
T Consensus 2 ~~LP~Eil~~If 13 (47)
T PF12937_consen 2 SSLPDEILLEIF 13 (47)
T ss_dssp CCS-HHHHHHHH
T ss_pred hHhHHHHHHHHH
Confidence 369999999987
No 13
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=20.84 E-value=1.2e+02 Score=16.24 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q 033991 44 VIELLLGLVLCM 55 (106)
Q Consensus 44 ~~E~l~~~~l~~ 55 (106)
.+|.++++++..
T Consensus 18 LiEllVa~~I~~ 29 (31)
T PF13544_consen 18 LIELLVAMAILA 29 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999988764
No 14
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=20.47 E-value=95 Score=21.84 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=12.4
Q ss_pred Cc-hhhHHHHHHHHHHHH
Q 033991 1 MG-SGFIVGVLGVSILAH 17 (106)
Q Consensus 1 M~-~s~~l~~vG~llL~H 17 (106)
|| +..++.++|.++|+-
T Consensus 1 mgf~~~vl~l~g~lllig 18 (126)
T PF13120_consen 1 MGFIKMVLLLIGTLLLIG 18 (126)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 77 677777888877763
Done!